source: trunk/src/MSWriter.cpp @ 3068

Last change on this file since 3068 was 3064, checked in by Takeshi Nakazato, 8 years ago

Fix for failure of sdsave unit test and FLS3a HI regression.

File size: 82.3 KB
Line 
1//
2// C++ Interface: MSWriter
3//
4// Description:
5//
6// This class is specific writer for MS format
7//
8// Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2010
9//
10// Copyright: See COPYING file that comes with this distribution
11//
12//
13#include <assert.h>
14
15#include <set>
16
17#include <casa/OS/File.h>
18#include <casa/OS/RegularFile.h>
19#include <casa/OS/Directory.h>
20#include <casa/OS/SymLink.h>
21#include <casa/BasicSL/String.h>
22#include <casa/Arrays/Cube.h>
23#include <casa/Containers/RecordField.h>
24
25#include <tables/Tables/ExprNode.h>
26#include <tables/Tables/TableDesc.h>
27#include <tables/Tables/SetupNewTab.h>
28#include <tables/Tables/TableIter.h>
29#include <tables/Tables/RefRows.h>
30#include <tables/Tables/TableRow.h>
31
32#include <ms/MeasurementSets/MeasurementSet.h>
33#include <ms/MeasurementSets/MSColumns.h>
34#include <ms/MSSel/MSPolIndex.h>
35#include <ms/MSSel/MSDataDescIndex.h>
36#include <ms/MSSel/MSSourceIndex.h>
37
38#include "MSWriter.h"
39#include "STHeader.h"
40#include "STFrequencies.h"
41#include "STMolecules.h"
42#include "STTcal.h"
43#include "MathUtils.h"
44#include "TableTraverse.h"
45
46using namespace casa ;
47using namespace std ;
48
49namespace asap {
50
51class CorrTypeHandler {
52public:
53  CorrTypeHandler()
54  {}
55  virtual ~CorrTypeHandler() {}
56  virtual Vector<Stokes::StokesTypes> corrType() = 0 ;
57  virtual void reset()
58  {
59    npol = 0 ;
60  }
61  void append( uInt polno )
62  {
63    polnos[npol] = polno ;
64    npol++ ;
65  }
66  uInt nPol() { return npol ; }
67protected:
68  Vector<Stokes::StokesTypes> polmap ;
69  uInt polnos[4] ;
70  uInt npol ;
71};
72
73class LinearHandler : public CorrTypeHandler {
74public:
75  LinearHandler()
76    : CorrTypeHandler()
77  {
78    initMap() ;
79  }
80  virtual ~LinearHandler() {}
81  virtual Vector<Stokes::StokesTypes> corrType()
82  {
83    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
84    if ( npol < 4 ) {
85      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
86        ret[ipol] = polmap[polnos[ipol]] ;
87    }
88    else if ( npol == 4 ) {
89      ret[0] = polmap[0] ;
90      ret[1] = polmap[2] ;
91      ret[2] = polmap[3] ;
92      ret[3] = polmap[1] ;
93    }
94    else {
95      throw( AipsError("npol > 4") ) ;
96    }
97    return ret ;
98  }
99protected:
100  void initMap()
101  {
102    polmap.resize( 4 ) ;
103    polmap[0] = Stokes::XX ;
104    polmap[1] = Stokes::YY ;
105    polmap[2] = Stokes::XY ;
106    polmap[3] = Stokes::YX ;
107  }
108};
109class CircularHandler : public CorrTypeHandler {
110public:
111  CircularHandler()
112    : CorrTypeHandler()
113  {
114    initMap() ;
115  }
116  virtual ~CircularHandler() {}
117  virtual Vector<Stokes::StokesTypes> corrType()
118  {
119    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
120    if ( npol < 4 ) {
121      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
122        ret[ipol] = polmap[polnos[ipol]] ;
123    }
124    else if ( npol == 4 ) {
125      ret[0] = polmap[0] ;
126      ret[1] = polmap[2] ;
127      ret[2] = polmap[3] ;
128      ret[3] = polmap[1] ;
129    }
130    else {
131      throw( AipsError("npol > 4") ) ;
132    }
133    return ret ;
134  }
135private:
136  void initMap()
137  {
138    polmap.resize( 4 ) ;
139    polmap[0] = Stokes::RR ;
140    polmap[1] = Stokes::LL ;
141    polmap[2] = Stokes::RL ;
142    polmap[3] = Stokes::LR ;
143  }
144};
145class StokesHandler : public CorrTypeHandler {
146public:
147  StokesHandler()
148    : CorrTypeHandler()
149  {
150    initMap() ;
151  }
152  virtual ~StokesHandler() {}
153  virtual Vector<Stokes::StokesTypes> corrType()
154  {
155    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
156    if ( npol <= 4 ) {
157      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
158        ret[ipol] = polmap[polnos[ipol]] ;
159    }
160    else {
161      throw( AipsError("npol > 4") ) ;
162    }
163    return ret ;
164  }
165private:
166  void initMap()
167  {
168    polmap.resize( 4 ) ;
169    polmap[0] = Stokes::I ;
170    polmap[1] = Stokes::Q ;
171    polmap[2] = Stokes::U ;
172    polmap[3] = Stokes::V ;
173  }
174};
175class LinPolHandler : public CorrTypeHandler {
176public:
177  LinPolHandler()
178    : CorrTypeHandler()
179  {
180    initMap() ;
181  }
182  virtual ~LinPolHandler() {}
183  virtual Vector<Stokes::StokesTypes> corrType()
184  {
185    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
186    if ( npol <= 2 ) {
187      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
188        ret[ipol] = polmap[polnos[ipol]] ;
189    }
190    else {
191      throw( AipsError("npol > 4") ) ;
192    }
193    return ret ;
194  }
195private:
196  void initMap()
197  {
198    polmap.resize( 2 ) ;
199    polmap[0] = Stokes::Plinear ;
200    polmap[1] = Stokes::Pangle ;
201  }
202};
203
204class DataHolder {
205public:
206  DataHolder( TableRow &tableRow, String polType )
207    : row( tableRow )
208  {
209    nchan = 0 ;
210    npol = 0 ;
211    makeCorrTypeHandler( polType ) ;
212    attach() ;
213    flagRow.resize( 4 ) ;
214    reset() ;
215    sigmaTemplate.resize( 4 ) ;
216    sigmaTemplate = 1.0 ;
217  }
218  virtual ~DataHolder() {}
219  void post()
220  {
221    postData() ;
222    postFlag() ;
223    postFlagRow() ;
224    postAuxiliary() ;
225  }
226  virtual void reset()
227  {
228    corr->reset() ;
229    flagRow = False ;
230    npol = 0 ;
231    for ( uInt i = 0 ; i < 4 ; i++ )
232      isFilled[i] = False ;   
233  }
234  virtual void accumulate( uInt id, Vector<Float> &sp, Vector<Bool> &fl, Bool &flr )
235  {
236    accumulateCorrType( id ) ;
237    accumulateData( id, sp ) ;
238    accumulateFlag( id, fl ) ;
239    accumulateFlagRow( id, flr ) ;
240    isFilled[id] = True;
241  }
242  uInt nPol() { return npol ; }
243  uInt nChan() { return nchan ; }
244  Vector<Int> corrTypeInt()
245  {
246    Vector<Int> v( npol ) ;
247    convertArray( v, corr->corrType() ) ;
248    return v ;
249  }
250  Vector<Stokes::StokesTypes> corrType() { return corr->corrType() ; }
251  void setNchan( uInt num )
252  {
253    nchan = num ;
254    resize() ;
255  }
256protected:
257  void postAuxiliary()
258  {
259    Vector<Float> w = sigmaTemplate( IPosition(1,0), IPosition(1,npol-1) ) ;
260    sigmaRF.define( w ) ;
261    weightRF.define( w ) ;
262    Cube<Bool> c( npol, nchan, 1, False ) ;
263    flagCategoryRF.define( c ) ;
264  }
265  inline void accumulateCorrType( uInt &id )
266  {
267    corr->append( id ) ;
268    npol = corr->nPol() ;
269  }
270  inline void accumulateFlagRow( uInt &id, Bool &flr )
271  {
272    flagRow[id] = flr ;
273  }
274  void postFlagRow()
275  {
276    // CAS-5545 FLAG_ROW must always be set False
277    //*flagRowRF = anyEQ( flagRow, True ) ;
278    *flagRowRF = False;
279  }
280  inline void accumulateFlag( uInt &id, Vector<Bool> &fl )
281  {
282    flag.row( id ) = fl ;
283  }
284  virtual void postFlag() = 0 ;
285  inline void accumulateData( uInt &id, Vector<Float> &sp )
286  {
287    data.row( id ) = sp ;
288  }
289  uInt filledIndex()
290  {
291    uInt idx = 0;
292    while( idx < 4 && !isFilled[idx] ) ++idx;
293    return idx;
294  }
295  virtual void postData() = 0 ;
296  TableRow &row ;
297  uInt nchan ;
298  uInt npol ;
299  CountedPtr<CorrTypeHandler> corr;
300  RecordFieldPtr< Vector<Float> > sigmaRF ;
301  RecordFieldPtr< Vector<Float> > weightRF ;
302  RecordFieldPtr< Array<Bool> > flagRF ;
303  RecordFieldPtr<Bool> flagRowRF ;
304  RecordFieldPtr< Cube<Bool> > flagCategoryRF ;
305  Vector<Bool> flagRow ;
306  Matrix<Bool> flag ;
307  Matrix<Float> data ;
308  Vector<Float> sigmaTemplate ;
309  Bool isFilled[4] ;
310private:
311  void makeCorrTypeHandler( String &polType )
312  {
313    if ( polType == "linear" )
314      corr = new LinearHandler() ;
315    else if ( polType == "circular" )
316      corr = new CircularHandler() ;
317    else if ( polType == "stokes" )
318      corr = new StokesHandler() ;
319    else if ( polType == "linpol" )
320      corr = new LinPolHandler() ;
321    else
322      throw( AipsError("Invalid polarization type") ) ;
323  }
324  void attach()
325  {
326    TableRecord &rec = row.record() ;
327    sigmaRF.attachToRecord( rec, "SIGMA" ) ;
328    weightRF.attachToRecord( rec, "WEIGHT" ) ;
329    flagRF.attachToRecord( rec, "FLAG" ) ;
330    flagRowRF.attachToRecord( rec, "FLAG_ROW" ) ;
331    flagCategoryRF.attachToRecord( rec, "FLAG_CATEGORY" ) ;
332  }
333  void resize()
334  {
335    flag.resize( 4, nchan ) ;
336    data.resize( 4, nchan ) ;
337  }
338};
339
340class FloatDataHolder : public DataHolder {
341public:
342  FloatDataHolder( TableRow &tableRow, String polType )
343    : DataHolder( tableRow, polType )
344  {
345    attachData() ;
346  }
347  virtual ~FloatDataHolder() {}
348protected:
349  virtual void postFlag()
350  {
351    // CAS-5545 FLAG must all be set True if FLAG_ROW is True
352    for (uInt ipol = 0; ipol < 4; ++ipol) {
353      if (isFilled[ipol] and flagRow[ipol]) {
354        flag(IPosition(2, ipol, 0), IPosition(2, ipol, nchan-1)) = True;
355      }
356    }
357   
358    if ( npol == 2 ) {
359      flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
360    }
361    else {
362      // should be npol == 1
363      uInt idx = filledIndex() ;
364      flagRF.define( flag( IPosition( 2, idx, 0 ), IPosition( 2, idx, nchan-1 ) ) ) ;
365    }
366  }
367  virtual void postData()
368  {
369    if ( npol == 2 ) {
370      dataRF.define( data( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
371    }
372    else {
373      // should be npol == 1
374      uInt idx = filledIndex() ;
375      dataRF.define( data( IPosition( 2, idx, 0 ), IPosition( 2, idx, nchan-1 ) ) ) ;
376    }
377  }
378private:
379  void attachData()
380  {
381    dataRF.attachToRecord( row.record(), "FLOAT_DATA" ) ;
382  }
383  RecordFieldPtr< Matrix<Float> > dataRF;
384};
385
386class ComplexDataHolder : public DataHolder {
387public:
388  ComplexDataHolder( TableRow &tableRow, String polType )
389    : DataHolder( tableRow, polType )
390  {
391    attachData() ;
392  }
393  virtual ~ComplexDataHolder() {}
394protected:
395  virtual void postFlag()
396  {
397    // CAS-5545 FLAG must all be set True if FLAG_ROW is True
398    for (uInt ipol = 0; ipol < 4; ++ipol) {
399      if (isFilled[ipol] and flagRow[ipol]) {
400        flag(IPosition(2, ipol, 0), IPosition(2, ipol, nchan-1)) = True;
401      }
402    }
403   
404    if ( npol == 4 ) {
405      Vector<Bool> tmp = flag.row( 3 ) ;
406      flag.row( 3 ) = flag.row( 1 ) ;
407      flag.row( 2 ) = flag.row( 2 ) || tmp ;
408      flag.row( 1 ) = flag.row( 2 ) ;
409      flagRF.define( flag ) ;
410    }
411    else if ( npol == 2 ) {
412      flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
413    }
414    else {
415      // should be npol == 1
416      uInt idx = filledIndex() ;
417      flagRF.define( flag( IPosition( 2, idx, 0 ), IPosition( 2, idx, nchan-1 ) ) ) ;
418    }
419  }
420  virtual void postData()
421  {
422    Matrix<Float> tmp( 2, nchan, 0.0 ) ;
423    Matrix<Complex> v( npol, nchan ) ;
424    if ( isFilled[0] ) {
425      tmp.row( 0 ) = data.row( 0 ) ;
426      v.row( 0 ) = RealToComplex( tmp ) ;
427    }
428    if ( isFilled[1] ) {
429      tmp.row( 0 ) = data.row( 1 ) ;
430      v.row( npol-1 ) = RealToComplex( tmp ) ;
431    }
432    if ( isFilled[2] && isFilled[3] ) {
433      tmp.row( 0 ) = data.row( 2 ) ;
434      tmp.row( 1 ) = data.row( 3 ) ;
435      v.row( 1 ) = RealToComplex( tmp ) ;
436      v.row( 2 ) = conj( v.row( 1 ) ) ;
437    }
438    dataRF.define( v ) ;
439  }
440private:
441  void attachData()
442  {
443    dataRF.attachToRecord( row.record(), "DATA" ) ;
444  }
445  RecordFieldPtr< Matrix<Complex> > dataRF;
446};
447
448class BaseMSWriterVisitor: public TableVisitor {
449  const String *lastFieldName;
450  uInt lastRecordNo;
451  uInt lastBeamNo, lastScanNo, lastIfNo, lastPolNo;
452  Int lastSrcType;
453  uInt lastCycleNo;
454  Double lastTime;
455protected:
456  const Table &table;
457  uInt count;
458public:
459  BaseMSWriterVisitor(const Table &table)
460    : table(table)
461  {
462    static const String dummy;
463    lastFieldName = &dummy;
464    count = 0;
465  }
466 
467  virtual void enterFieldName(const uInt /*recordNo*/, const String &/*columnValue*/) {
468  }
469  virtual void leaveFieldName(const uInt /*recordNo*/, const String &/*columnValue*/) {
470  }
471  virtual void enterBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
472  virtual void leaveBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
473  virtual void enterScanNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
474  virtual void leaveScanNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
475  virtual void enterIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
476  virtual void leaveIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
477  virtual void enterSrcType(const uInt /*recordNo*/, Int /*columnValue*/) { }
478  virtual void leaveSrcType(const uInt /*recordNo*/, Int /*columnValue*/) { }
479  virtual void enterCycleNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
480  virtual void leaveCycleNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
481  virtual void enterTime(const uInt /*recordNo*/, Double /*columnValue*/) { }
482  virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) { }
483  virtual void enterPolNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
484  virtual void leavePolNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
485
486  virtual Bool visitRecord(const uInt /*recordNo*/,
487                           const String &/*fieldName*/,
488                           const uInt /*beamNo*/,
489                           const uInt /*scanNo*/,
490                           const uInt /*ifNo*/,
491                           const Int /*srcType*/,
492                           const uInt /*cycleNo*/,
493                           const Double /*time*/,
494                           const uInt /*polNo*/) { return True ;}
495
496  virtual Bool visit(Bool isFirst, const uInt recordNo,
497                     const uInt nCols, void const *const colValues[]) {
498    const String *fieldName = NULL;
499    uInt beamNo, scanNo, ifNo;
500    Int srcType;
501    uInt cycleNo;
502    Double time;
503    uInt polNo;
504    { // prologue
505      uInt i = 0;
506      {
507        const String *col = (const String*)colValues[i++];
508        fieldName = &col[recordNo];
509      }
510      {
511        const uInt *col = (const uInt *)colValues[i++];
512        beamNo = col[recordNo];
513      }
514      {
515        const uInt *col = (const uInt *)colValues[i++];
516        scanNo = col[recordNo];
517      }
518      {
519        const uInt *col = (const uInt *)colValues[i++];
520        ifNo = col[recordNo];
521      }
522      {
523        const Int *col = (const Int *)colValues[i++];
524        srcType = col[recordNo];
525      }
526      {
527        const uInt *col = (const uInt *)colValues[i++];
528        cycleNo = col[recordNo];
529      }
530      {
531        const Double *col = (const Double *)colValues[i++];
532        time = col[recordNo];
533      }
534      {
535        const Int *col = (const Int *)colValues[i++];
536        polNo = col[recordNo];
537      }
538      assert(nCols == i);
539    }
540
541    if (isFirst) {
542      enterFieldName(recordNo, *fieldName);
543      enterBeamNo(recordNo, beamNo);
544      enterScanNo(recordNo, scanNo);
545      enterIfNo(recordNo, ifNo);
546      enterSrcType(recordNo, srcType);
547      enterCycleNo(recordNo, cycleNo);
548      enterTime(recordNo, time);
549      enterPolNo(recordNo, polNo);
550    } else {
551      if (lastFieldName->compare(*fieldName) != 0) {
552        leavePolNo(lastRecordNo, lastPolNo);
553        leaveTime(lastRecordNo, lastTime);
554        leaveCycleNo(lastRecordNo, lastCycleNo);
555        leaveSrcType(lastRecordNo, lastSrcType);
556        leaveIfNo(lastRecordNo, lastIfNo);
557        leaveScanNo(lastRecordNo, lastScanNo);
558        leaveBeamNo(lastRecordNo, lastBeamNo);
559        leaveFieldName(lastRecordNo, *lastFieldName);
560
561        enterFieldName(recordNo, *fieldName);
562        enterBeamNo(recordNo, beamNo);
563        enterScanNo(recordNo, scanNo);
564        enterIfNo(recordNo, ifNo);
565        enterSrcType(recordNo, srcType);
566        enterCycleNo(recordNo, cycleNo);
567        enterTime(recordNo, time);
568        enterPolNo(recordNo, polNo);
569      } else if (lastBeamNo != beamNo) {
570        leavePolNo(lastRecordNo, lastPolNo);
571        leaveTime(lastRecordNo, lastTime);
572        leaveCycleNo(lastRecordNo, lastCycleNo);
573        leaveSrcType(lastRecordNo, lastSrcType);
574        leaveIfNo(lastRecordNo, lastIfNo);
575        leaveScanNo(lastRecordNo, lastScanNo);
576        leaveBeamNo(lastRecordNo, lastBeamNo);
577
578        enterBeamNo(recordNo, beamNo);
579        enterScanNo(recordNo, scanNo);
580        enterIfNo(recordNo, ifNo);
581        enterSrcType(recordNo, srcType);
582        enterCycleNo(recordNo, cycleNo);
583        enterTime(recordNo, time);
584        enterPolNo(recordNo, polNo);
585      } else if (lastScanNo != scanNo) {
586        leavePolNo(lastRecordNo, lastPolNo);
587        leaveTime(lastRecordNo, lastTime);
588        leaveCycleNo(lastRecordNo, lastCycleNo);
589        leaveSrcType(lastRecordNo, lastSrcType);
590        leaveIfNo(lastRecordNo, lastIfNo);
591        leaveScanNo(lastRecordNo, lastScanNo);
592
593        enterScanNo(recordNo, scanNo);
594        enterIfNo(recordNo, ifNo);
595        enterSrcType(recordNo, srcType);
596        enterCycleNo(recordNo, cycleNo);
597        enterTime(recordNo, time);
598        enterPolNo(recordNo, polNo);
599      } else if (lastIfNo != ifNo) {
600        leavePolNo(lastRecordNo, lastPolNo);
601        leaveTime(lastRecordNo, lastTime);
602        leaveCycleNo(lastRecordNo, lastCycleNo);
603        leaveSrcType(lastRecordNo, lastSrcType);
604        leaveIfNo(lastRecordNo, lastIfNo);
605
606        enterIfNo(recordNo, ifNo);
607        enterSrcType(recordNo, srcType);
608        enterCycleNo(recordNo, cycleNo);
609        enterTime(recordNo, time);
610        enterPolNo(recordNo, polNo);
611      } else if (lastSrcType != srcType) {
612        leavePolNo(lastRecordNo, lastPolNo);
613        leaveTime(lastRecordNo, lastTime);
614        leaveCycleNo(lastRecordNo, lastCycleNo);
615        leaveSrcType(lastRecordNo, lastSrcType);
616
617        enterSrcType(recordNo, srcType);
618        enterCycleNo(recordNo, cycleNo);
619        enterTime(recordNo, time);
620        enterPolNo(recordNo, polNo);
621      } else if (lastCycleNo != cycleNo) {
622        leavePolNo(lastRecordNo, lastPolNo);
623        leaveTime(lastRecordNo, lastTime);
624        leaveCycleNo(lastRecordNo, lastCycleNo);
625
626        enterCycleNo(recordNo, cycleNo);
627        enterTime(recordNo, time);
628        enterPolNo(recordNo, polNo);
629      } else if (lastTime != time) {
630        leavePolNo(lastRecordNo, lastPolNo);
631        leaveTime(lastRecordNo, lastTime);
632
633        enterTime(recordNo, time);
634        enterPolNo(recordNo, polNo);
635      } else if (lastPolNo != polNo) {
636        leavePolNo(lastRecordNo, lastPolNo);
637        enterPolNo(recordNo, polNo);
638      }
639    }
640    count++;
641    Bool result = visitRecord(recordNo, *fieldName, beamNo, scanNo, ifNo, srcType,
642                              cycleNo, time, polNo);
643
644    { // epilogue
645      lastRecordNo = recordNo;
646
647      lastFieldName = fieldName;
648      lastBeamNo = beamNo;
649      lastScanNo = scanNo;
650      lastIfNo = ifNo;
651      lastSrcType = srcType;
652      lastCycleNo = cycleNo;
653      lastTime = time;
654      lastPolNo = polNo;
655    }
656    return result ;
657  }
658
659  virtual void finish() {
660    if (count > 0) {
661      leavePolNo(lastRecordNo, lastPolNo);
662      leaveTime(lastRecordNo, lastTime);
663      leaveCycleNo(lastRecordNo, lastCycleNo);
664      leaveSrcType(lastRecordNo, lastSrcType);
665      leaveIfNo(lastRecordNo, lastIfNo);
666      leaveScanNo(lastRecordNo, lastScanNo);
667      leaveBeamNo(lastRecordNo, lastBeamNo);
668      leaveFieldName(lastRecordNo, *lastFieldName);
669    }
670  }
671};
672
673class MSWriterVisitor: public BaseMSWriterVisitor, public MSWriterUtils {
674public:
675  MSWriterVisitor(const Table &table, Table &mstable)
676    : BaseMSWriterVisitor(table),
677      ms(mstable),
678      addScanrate_(False),
679      pointingTimeList_(table.nrow(), -1.0),
680      referenceBeam_(-1)
681  {
682    rowidx = 0 ;
683    fieldName = "" ;
684    defaultFieldId = 0 ;
685    spwId = -1 ;
686    subscan = 1 ;
687    ptName = "" ;
688    srcId = 0 ;
689   
690    row = TableRow( ms ) ;
691
692    initPolarization() ;
693    initFrequencies() ;
694
695    //
696    // add rows to MS
697    //
698    uInt addrow = table.nrow() ;
699    ms.addRow( addrow ) ;
700
701    // attach to Scantable columns
702    spectraCol.attach( table, "SPECTRA" ) ;
703    flagtraCol.attach( table, "FLAGTRA" ) ;
704    flagRowCol.attach( table, "FLAGROW" ) ;
705    tcalIdCol.attach( table, "TCAL_ID" ) ;
706    intervalCol.attach( table, "INTERVAL" ) ;
707    directionCol.attach( table, "DIRECTION" ) ;
708    scanRateCol.attach( table, "SCANRATE" ) ;
709    timeCol.attach( table, "TIME" ) ;
710    freqIdCol.attach( table, "FREQ_ID" ) ;
711    sourceNameCol.attach( table, "SRCNAME" ) ;
712    sourceDirectionCol.attach( table, "SRCDIRECTION" ) ;
713    fieldNameCol.attach( table, "FIELDNAME" ) ;
714
715    // MS subtables
716    attachSubtables() ;
717
718    // attach to MS columns
719    attachMain() ;
720    attachPointing() ;
721
722    // decide whether put SCANRATE to MS POINTING column
723    if (anyNE(scanRateCol.getColumn(), (Double)0.0)) {
724      addScanrate_ = True;
725    }
726  }
727 
728  virtual void enterFieldName(const uInt recordNo, const String &/*columnValue*/) {
729    //printf("%u: FieldName: %s\n", recordNo, columnValue.c_str());
730    fieldName = fieldNameCol.asString( recordNo ) ;
731    String::size_type pos = fieldName.find( "__" ) ;
732    if ( pos != String::npos ) {
733      fieldId = String::toInt( fieldName.substr( pos+2 ) ) ;
734      fieldName = fieldName.substr( 0, pos ) ;
735    }
736    else {
737      fieldId = defaultFieldId ;
738      defaultFieldId++ ;
739    }
740    Double tSec = timeCol.asdouble( recordNo ) * 86400.0 ;
741    Vector<Double> srcDir = sourceDirectionCol( recordNo ) ;
742    Vector<Double> srate = scanRateCol( recordNo ) ;
743    String srcName = sourceNameCol.asString( recordNo ) ;
744
745    addField( fieldId, fieldName, srcName, srcDir, srate, tSec ) ;
746
747    // put value
748    *fieldIdRF = fieldId ;
749  }
750  virtual void leaveFieldName(const uInt /*recordNo*/, const String &/*columnValue*/) {
751  }
752  virtual void enterBeamNo(const uInt /*recordNo*/, uInt columnValue) {
753    //printf("%u: BeamNo: %u\n", recordNo, columnValue);
754   
755    feedId = (Int)columnValue ;
756    if (referenceBeam_ < 0) {
757      referenceBeam_ = feedId;
758      LogIO os;
759      os << "Reference beam is " << referenceBeam_ << LogIO::POST;
760    }
761
762    // put value
763    *feed1RF = feedId ;
764    *feed2RF = feedId ;
765  }
766  virtual void leaveBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
767  }
768  virtual void enterScanNo(const uInt /*recordNo*/, uInt columnValue) {
769    //printf("%u: ScanNo: %u\n", recordNo, columnValue);
770
771    // put value
772    // CAS-5841: SCANNO should be consistent with MS SCAN_NUMBER
773    *scanNumberRF = (Int)columnValue ;
774  }
775  virtual void leaveScanNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
776    subscan = 1 ;
777  }
778  virtual void enterIfNo(const uInt recordNo, uInt columnValue) {
779    //printf("%u: IfNo: %u\n", recordNo, columnValue);
780
781    spwId = (Int)columnValue ;
782    uInt freqId = freqIdCol.asuInt( recordNo ) ;
783
784    Vector<Float> sp = spectraCol( recordNo ) ;
785    uInt nchan = sp.nelements() ;
786    holder->setNchan( nchan ) ;
787
788    addSpectralWindow( spwId, freqId ) ;
789
790    addFeed( feedId, spwId ) ;
791  }
792  virtual void leaveIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
793  }
794  virtual void enterSrcType(const uInt /*recordNo*/, Int columnValue) {
795    //printf("%u: SrcType: %d\n", recordNo, columnValue);
796
797    Int stateId = addState( columnValue ) ;
798
799    // put value
800    *stateIdRF = stateId ;
801  }
802  virtual void leaveSrcType(const uInt /*recordNo*/, Int /*columnValue*/) {
803  }
804  virtual void enterCycleNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
805    //printf("%u: CycleNo: %u\n", recordNo, columnValue);
806  }
807  virtual void leaveCycleNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
808  }
809  virtual void enterTime(const uInt recordNo, Double columnValue) {
810    //printf("%u: Time: %f\n", recordNo, columnValue);
811
812    Double timeSec = columnValue * 86400.0 ;
813    Double interval = intervalCol.asdouble( recordNo ) ;
814
815    // add POINTING row only when 1) BEAMNO is 0 and
816    // 2) there is no row corresponding to the current timestamp
817    //LogIO os;
818    //os << "feedId = " << feedId << LogIO::POST;
819    if ( ptName.empty() && feedId == referenceBeam_ &&
820        (potab.nrow() == 0 || allNE(pointingTimeList_(Slice(0, potab.nrow())), timeSec))) {
821      LogIO os;
822      os << LogIO::DEBUGGING << "ROW " << recordNo << " Beam " << feedId
823          << ": adding pointing row, potab.nrow() = " << potab.nrow() << LogIO::POST;
824      pointingTimeList_[potab.nrow()] = timeSec;
825      Vector<Double> dir = directionCol( recordNo ) ;
826      Vector<Double> rate = scanRateCol( recordNo ) ;
827//      if (feedId != referenceBeam_) {
828//        os << LogIO::DEBUGGING << "TODO: Need to store pointing direction of reference beam"
829//            << " if only non-reference beam row is available for certain timestamp" << LogIO::POST;
830//      }
831      //if ( anyNE( rate, 0.0 ) ) {
832      if (addScanrate_) {
833        Matrix<Double> msdir( 2, 2 ) ;
834        msdir.column( 0 ) = dir ;
835        msdir.column( 1 ) = rate ;
836        addPointing( timeSec, interval, msdir ) ;
837      }
838      else {
839        Matrix<Double> msdir( 2, 1 ) ;
840        msdir.column( 0 ) = dir ;
841        addPointing( timeSec, interval, msdir ) ;
842      }
843    }
844
845    // put value
846    *timeRF = timeSec ;
847    *timeCentroidRF = timeSec ;
848    *intervalRF = interval ;
849    *exposureRF = interval ;
850  }
851  virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) {
852    if ( holder->nPol() > 0 ) {
853      Int polId = addPolarization() ;
854      Int ddId = addDataDescription( polId, spwId ) ;
855       
856      // put field
857      *dataDescIdRF = ddId ;
858      holder->post() ;
859     
860      // commit row
861      row.put( rowidx ) ;
862      rowidx++ ;
863
864      // reset holder
865      holder->reset() ;
866    }
867  }
868  virtual void enterPolNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
869    //printf("%u: PolNo: %d\n", recordNo, columnValue);
870  }
871  virtual void leavePolNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
872  }
873
874  virtual Bool visitRecord(const uInt recordNo,
875                           const String &/*fieldName*/,
876                           const uInt /*beamNo*/,
877                           const uInt /*scanNo*/,
878                           const uInt /*ifNo*/,
879                           const Int /*srcType*/,
880                           const uInt /*cycleNo*/,
881                           const Double /*time*/,
882                           const uInt polNo) {
883    //printf("%u: %s, %u, %u, %u, %d, %u, %f, %d\n", recordNo,
884    //       fieldName.c_str(), beamNo, scanNo, ifNo, srcType, cycleNo, time, polNo);
885
886    Vector<Float> sp = spectraCol( recordNo ) ;
887    Vector<uChar> tmp = flagtraCol( recordNo ) ;
888    Vector<Bool> fl( tmp.shape() ) ;
889    convertArray( fl, tmp ) ;
890    Bool flr = (Bool)flagRowCol.asuInt( recordNo ) ;
891    holder->accumulate( polNo, sp, fl, flr ) ;
892
893    return True ;
894  }
895
896  virtual void finish() {
897    BaseMSWriterVisitor::finish();
898    //printf("Total: %u\n", count);
899
900    // remove rows
901    if ( ms.nrow() > rowidx ) {
902      uInt numRemove = ms.nrow() - rowidx ;
903      //cout << "numRemove = " << numRemove << endl ;
904      Vector<uInt> rows( numRemove ) ;
905      indgen( rows, rowidx ) ;
906      ms.removeRow( rows ) ;
907    }
908
909    // fill empty SPECTRAL_WINDOW rows
910    infillSpectralWindow() ;
911
912    // fill empty FIELD rows
913    infillField() ;
914
915    // sort POINTING rows
916    if (ptName.empty()) {
917      sortPointing();
918    }
919  }
920
921  void dataColumnName( String name )
922  {
923    if ( name == "DATA" )
924      holder = new ComplexDataHolder( row, poltype ) ;
925    else if ( name == "FLOAT_DATA" )
926      holder = new FloatDataHolder( row, poltype ) ;
927  }
928  void pointingTableName( String name ) {
929    ptName = name ;
930  }
931  void setSourceRecord( Record &r ) {
932    srcRec = r ;
933  }
934private:
935  void addField( Int &fid, String &fname, String &srcName,
936                 Vector<Double> &sdir, Vector<Double> &srate,
937                 Double &tSec )
938  {
939    uInt nrow = fieldtab.nrow() ;
940    while( (Int)nrow <= fid ) {
941      fieldtab.addRow( 1, True ) ;
942      nrow++ ;
943    }
944
945    Matrix<Double> dir ;
946    Int numPoly = 0 ;
947    if ( anyNE( srate, 0.0 ) ) {
948      dir.resize( 2, 2 ) ;
949      dir.column( 0 ) = sdir ;
950      dir.column( 1 ) = srate ;
951      numPoly = 1 ;
952    }
953    else {
954      dir.resize( 2, 1 ) ;
955      dir.column( 0 ) = sdir ;
956    }
957    srcId = srcRec.asInt( srcName ) ;
958
959    TableRow tr( fieldtab ) ;
960    TableRecord &r = tr.record() ;
961    putField( "NAME", r, fname ) ;
962    putField( "NUM_POLY", r, numPoly ) ;
963    putField( "TIME", r, tSec ) ;
964    putField( "SOURCE_ID", r, srcId ) ;
965    defineField( "DELAY_DIR", r, dir ) ;
966    defineField( "REFERENCE_DIR", r, dir ) ;
967    defineField( "PHASE_DIR", r, dir ) ;
968    tr.put( fid ) ;
969
970    // for POINTING table
971    *poNameRF = fname ;
972  }
973  Int addState( Int &id )
974  {
975    String obsMode ;
976    Bool isSignal ;
977    Double tnoise ;
978    Double tload ;
979    queryType( id, obsMode, isSignal, tnoise, tload ) ;
980
981    String key = obsMode+"_"+String::toString( subscan ) ;
982    Int idx = -1 ;
983    uInt nEntry = stateEntry.nelements() ;
984    for ( uInt i = 0 ; i < nEntry ; i++ ) {
985      if ( stateEntry[i] == key ) {
986        idx = i ;
987        break ;
988      }
989    }
990    if ( idx == -1 ) {
991      uInt nrow = statetab.nrow() ;
992      statetab.addRow( 1, True ) ;
993      TableRow tr( statetab ) ;
994      TableRecord &r = tr.record() ;
995      putField( "OBS_MODE", r, obsMode ) ;
996      putField( "SIG", r, isSignal ) ;
997      isSignal = !isSignal ;
998      putField( "REF", r, isSignal ) ;
999      putField( "CAL", r, tnoise ) ;
1000      putField( "LOAD", r, tload ) ;
1001      tr.put( nrow ) ;
1002      idx = nrow ;
1003
1004      stateEntry.resize( nEntry+1, True ) ;
1005      stateEntry[nEntry] = key ;
1006    }
1007    subscan++ ;
1008
1009    return idx ;
1010  }
1011  void addPointing( Double &tSec, Double &interval, Matrix<Double> &dir )
1012  {
1013    uInt nrow = potab.nrow() ;
1014    potab.addRow() ;
1015
1016    *poNumPolyRF = dir.ncolumn() - 1 ;
1017    *poTimeRF = tSec ;
1018    *poTimeOriginRF = tSec ;
1019    *poIntervalRF = interval ;
1020    poDirectionRF.define( dir ) ;
1021    poTargetRF.define( dir ) ;
1022    porow.put( nrow ) ;
1023  }
1024
1025  void sortPointing()
1026  {
1027    ScalarColumn<Double> timeCol(potab, "TIME");
1028    Vector<Double> originalTime = timeCol.getColumn();
1029    Sort sort;
1030    sort.sortKey(&originalTime[0], TpDouble, 0, Sort::Ascending);
1031    Vector<uInt> sortIndex;
1032    sort.sort(sortIndex, originalTime.nelements());
1033
1034    sortPointingTime(sortIndex);
1035    sortPointingNumPoly(sortIndex);
1036    sortPointingInterval(sortIndex);
1037    sortPointingName(sortIndex);
1038    sortPointingDirection(sortIndex);
1039  }
1040
1041  void sortPointingTime(const Vector<uInt> &sortIndex)
1042  {
1043    sortScalarColumn<Double>("TIME", sortIndex, "TIME_ORIGIN");
1044  }
1045
1046  void sortPointingNumPoly(const Vector<uInt> &sortIndex)
1047  {
1048    sortScalarColumn<Int>("NUM_POLY", sortIndex);
1049  }
1050
1051  void sortPointingInterval(const Vector<uInt> &sortIndex)
1052  {
1053    sortScalarColumn<Double>("INTERVAL", sortIndex);
1054  }
1055
1056  void sortPointingName(const Vector<uInt> &sortIndex)
1057  {
1058    sortScalarColumn<String>("NAME", sortIndex);
1059  }
1060
1061  void sortPointingDirection(const Vector<uInt> &sortIndex)
1062  {
1063    ArrayColumn<Double> col(potab, "DIRECTION");
1064    Cube<Double> data = col.getColumn();
1065    Cube<Double> sortedData(data.shape());
1066    for (size_t i = 0; i < sortIndex.nelements(); ++i) {
1067      sortedData.xyPlane(i) = data.xyPlane(sortIndex[i]);
1068    }
1069
1070    col.putColumn(sortedData);
1071    col.attach(potab, "TARGET");
1072    col.putColumn(sortedData);
1073  }
1074
1075  template<class T>
1076  void sortScalarColumn(const String &columnName, const Vector<uInt> &sortIndex, const String &copyColumnName="")
1077  {
1078    ScalarColumn<T> col(potab, columnName);
1079    Vector<T> data = col.getColumn();
1080    Vector<T> sortedData(data.shape());
1081    for (size_t i = 0; i < sortIndex.nelements(); ++i) {
1082      sortedData[i] = data[sortIndex[i]];
1083    }
1084    col.putColumn(sortedData);
1085    if (copyColumnName.size() > 0) {
1086      col.attach(potab, copyColumnName);
1087      col.putColumn(sortedData);
1088    }
1089  }
1090
1091  Int addPolarization()
1092  {
1093    Int idx = -1 ;
1094    Vector<Int> corrType = holder->corrTypeInt() ;
1095    uInt nEntry = polEntry.size() ;
1096    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1097      if ( polEntry[i].conform( corrType ) && allEQ( polEntry[i], corrType ) ) {
1098        idx = i ;
1099        break ;
1100      }
1101    }
1102   
1103    Int numCorr = holder->nPol() ;
1104    Matrix<Int> corrProduct = corrProductTemplate[numCorr].copy() ;
1105    if ( numCorr == 1 && (corrType[0] == Stokes::YY || corrType[0] == Stokes::LL ) ) {
1106      corrProduct = 1;
1107    }
1108
1109    if ( idx == -1 ) {
1110      uInt nrow = poltab.nrow() ;
1111      poltab.addRow( 1, True ) ;
1112      TableRow tr( poltab ) ;
1113      TableRecord &r = tr.record() ;
1114      putField( "NUM_CORR", r, numCorr ) ;
1115      defineField( "CORR_TYPE", r, corrType ) ;
1116      defineField( "CORR_PRODUCT", r, corrProduct ) ;
1117      tr.put( nrow ) ;
1118      idx = nrow ;
1119
1120      polEntry.resize( nEntry+1 ) ;
1121      polEntry[nEntry] = corrType ;
1122    }
1123
1124    return idx ;
1125  }
1126  Int addDataDescription( Int pid, Int sid )
1127  {
1128    Int idx = -1 ;
1129    uInt nItem = 2 ;
1130    uInt len = ddEntry.nelements() ;
1131    uInt nEntry = len / nItem ;
1132    const Int *dd_p = ddEntry.storage() ;
1133    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1134      Int pol = *dd_p ;
1135      dd_p++ ;
1136      Int spw = *dd_p ;
1137      dd_p++ ;
1138      if ( pid == pol && sid == spw ) {
1139        idx = i ;
1140        break ;
1141      }
1142    }
1143
1144    if ( idx == -1 ) {
1145      uInt nrow = ddtab.nrow() ;
1146      ddtab.addRow( 1, True ) ;
1147      TableRow tr( ddtab ) ;
1148      TableRecord &r = tr.record() ;
1149      putField( "POLARIZATION_ID", r, pid ) ;
1150      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1151      tr.put( nrow ) ;
1152      idx = nrow ;
1153
1154      ddEntry.resize( len+nItem ) ;
1155      ddEntry[len] = pid ;
1156      ddEntry[len+1] = sid ;
1157    }
1158
1159    return idx ;
1160  }
1161  void infillSpectralWindow()
1162  {
1163    ROScalarColumn<Int> nchanCol( spwtab, "NUM_CHAN" ) ;
1164    Vector<Int> nchan = nchanCol.getColumn() ;
1165    TableRow tr( spwtab ) ;
1166    TableRecord &r = tr.record() ;
1167    Int mfr = freqframe ;
1168    Int oneChan = 1 ;
1169    Vector<Double> dummy( 1, 0.0 ) ;
1170    putField( "MEAS_FREQ_REF", r, mfr ) ;
1171    defineField( "CHAN_FREQ", r, dummy ) ;
1172    defineField( "CHAN_WIDTH", r, dummy ) ;
1173    defineField( "EFFECTIVE_BW", r, dummy ) ;
1174    defineField( "RESOLUTION", r, dummy ) ;
1175    putField( "NUM_CHAN", r, oneChan ) ;
1176
1177    for ( uInt i = 0 ; i < spwtab.nrow() ; i++ ) {
1178      if ( nchan[i] == 0 )
1179        tr.put( i ) ;
1180    }
1181  }
1182  void infillField()
1183  {
1184    ScalarColumn<Int> sourceIdCol(fieldtab, "SOURCE_ID");
1185    ArrayColumn<Double> delayDirCol(fieldtab, "DELAY_DIR");
1186    ArrayColumn<Double> phaseDirCol(fieldtab, "PHASE_DIR");
1187    ArrayColumn<Double> referenceDirCol(fieldtab, "REFERENCE_DIR");
1188    uInt nrow = fieldtab.nrow();
1189    Matrix<Double> dummy(IPosition(2, 2, 1), 0.0);
1190    for (uInt irow = 0; irow < nrow; ++irow) {
1191      if (!phaseDirCol.isDefined(irow)) {
1192        delayDirCol.put(irow, dummy);
1193        phaseDirCol.put(irow, dummy);
1194        referenceDirCol.put(irow, dummy);
1195        sourceIdCol.put(irow, -1);
1196      }
1197    }
1198  }
1199  void addSpectralWindow( Int sid, uInt fid )
1200  {
1201    if (processedFreqId.find((uInt)fid) == processedFreqId.end()
1202        || processedIFNO.find((uInt)sid) == processedIFNO.end() ) {
1203      uInt nrow = spwtab.nrow() ;
1204      while( (Int)nrow <= sid ) {
1205        spwtab.addRow( 1, True ) ;
1206        nrow++ ;
1207      }
1208      processedFreqId.insert((uInt)fid);
1209      processedIFNO.insert((uInt)sid);
1210    }
1211    else {
1212      return ;
1213    }
1214     
1215
1216    Double rp = refpix[fid] ;
1217    Double rv = refval[fid] ;
1218    Double ic = increment[fid] ;
1219
1220    Int mfrInt = (Int)freqframe ;
1221    Int nchan = holder->nChan() ;
1222    Double bw = nchan * abs( ic ) ;
1223    Double reffreq = rv - rp * ic ;
1224    Int netsb = 0 ; // USB->0, LSB->1
1225    if ( ic < 0 )
1226      netsb = 1 ;
1227    Vector<Double> res( nchan, abs(ic) ) ;
1228    Vector<Double> cw( nchan, ic ) ;
1229    Vector<Double> chanf( nchan ) ;
1230    indgen( chanf, reffreq, ic ) ;
1231
1232    TableRow tr( spwtab ) ;
1233    TableRecord &r = tr.record() ;
1234    putField( "MEAS_FREQ_REF", r, mfrInt ) ;
1235    putField( "NUM_CHAN", r, nchan ) ;
1236    putField( "TOTAL_BANDWIDTH", r, bw ) ;
1237    putField( "REF_FREQUENCY", r, reffreq ) ;
1238    putField( "NET_SIDEBAND", r, netsb ) ;
1239    defineField( "RESOLUTION", r, res ) ;
1240//     defineField( "CHAN_WIDTH", r, res ) ;
1241    defineField( "CHAN_WIDTH", r, cw ) ;
1242    defineField( "EFFECTIVE_BW", r, res ) ;
1243    defineField( "CHAN_FREQ", r, chanf ) ;
1244    tr.put( sid ) ;
1245  }
1246  void addFeed( Int fid, Int sid )
1247  {
1248    Int idx = -1 ;
1249    uInt nItem = 2 ;
1250    uInt len = feedEntry.nelements() ;
1251    uInt nEntry = len / nItem ;
1252    const Int *fe_p = feedEntry.storage() ;
1253    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1254      Int feed = *fe_p ;
1255      fe_p++ ;
1256      Int spw = *fe_p ;
1257      fe_p++ ;
1258      if ( fid == feed && sid == spw ) {
1259        idx = i ;
1260        break ;
1261      }
1262    }
1263
1264
1265    if ( idx == -1 ) {
1266      uInt nrow = feedtab.nrow() ;
1267      feedtab.addRow( 1, True ) ;
1268      Int numReceptors = 2 ;
1269      Vector<String> polType( numReceptors ) ;
1270      Matrix<Double> beamOffset( 2, numReceptors, 0.0 ) ;
1271      Vector<Double> receptorAngle( numReceptors, 0.0 ) ;
1272      if ( poltype == "linear" ) {
1273        polType[0] = "X" ;
1274        polType[1] = "Y" ;
1275      }
1276      else if ( poltype == "circular" ) {
1277        polType[0] = "R" ;
1278        polType[1] = "L" ;
1279      }
1280      else {
1281        polType[0] = "X" ;
1282        polType[1] = "Y" ;
1283      }
1284      Matrix<Complex> polResponse( numReceptors, numReceptors, 0.0 ) ;
1285     
1286      TableRow tr( feedtab ) ;
1287      TableRecord &r = tr.record() ;
1288      putField( "FEED_ID", r, fid ) ;
1289      putField( "BEAM_ID", r, fid ) ;
1290      Int tmp = 0 ;
1291      putField( "ANTENNA_ID", r, tmp ) ;
1292      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1293      putField( "NUM_RECEPTORS", r, numReceptors ) ;
1294      defineField( "POLARIZATION_TYPE", r, polType ) ;
1295      defineField( "BEAM_OFFSET", r, beamOffset ) ;
1296      defineField( "RECEPTOR_ANGLE", r, receptorAngle ) ;
1297      defineField( "POL_RESPONSE", r, polResponse ) ;
1298      tr.put( nrow ) ;
1299
1300      feedEntry.resize( len+nItem ) ;
1301      feedEntry[len] = fid ;
1302      feedEntry[len+1] = sid ;
1303    }
1304  }
1305  void initPolarization()
1306  {
1307    const TableRecord &keys = table.keywordSet() ;
1308    poltype = keys.asString( "POLTYPE" ) ;
1309
1310    initCorrProductTemplate() ;
1311  }
1312  void initFrequencies()
1313  {
1314    const TableRecord &keys = table.keywordSet() ;
1315    Table tab = keys.asTable( "FREQUENCIES" ) ;
1316    ROScalarColumn<uInt> idcol( tab, "ID" ) ;
1317    ROScalarColumn<Double> rpcol( tab, "REFPIX" ) ;
1318    ROScalarColumn<Double> rvcol( tab, "REFVAL" ) ;
1319    ROScalarColumn<Double> iccol( tab, "INCREMENT" ) ;
1320    Vector<uInt> id = idcol.getColumn() ;
1321    Vector<Double> rp = rpcol.getColumn() ;
1322    Vector<Double> rv = rvcol.getColumn() ;
1323    Vector<Double> ic = iccol.getColumn() ;
1324    for ( uInt i = 0 ; i < id.nelements() ; i++ ) {
1325      refpix.insert( pair<uInt,Double>( id[i], rp[i] ) ) ;
1326      refval.insert( pair<uInt,Double>( id[i], rv[i] ) ) ;
1327      increment.insert( pair<uInt,Double>( id[i], ic[i] ) ) ;
1328    }
1329    String frameStr = tab.keywordSet().asString( "BASEFRAME" ) ;
1330    MFrequency::getType( freqframe, frameStr ) ;
1331  }
1332  void attachSubtables()
1333  {
1334    //const TableRecord &keys = table.keywordSet() ;
1335    TableRecord &mskeys = ms.rwKeywordSet() ;
1336
1337    // FIELD table
1338    fieldtab = mskeys.asTable( "FIELD" ) ;
1339
1340    // SPECTRAL_WINDOW table
1341    spwtab = mskeys.asTable( "SPECTRAL_WINDOW" ) ;
1342
1343    // POINTING table
1344    potab = mskeys.asTable( "POINTING" ) ;
1345
1346    // POLARIZATION table
1347    poltab = mskeys.asTable( "POLARIZATION" ) ;
1348
1349    // DATA_DESCRIPTION table
1350    ddtab = mskeys.asTable( "DATA_DESCRIPTION" ) ;
1351
1352    // STATE table
1353    statetab = mskeys.asTable( "STATE" ) ;
1354
1355    // FEED table
1356    feedtab = mskeys.asTable( "FEED" ) ;
1357  }
1358  void attachMain()
1359  {
1360    TableRecord &r = row.record() ;
1361    dataDescIdRF.attachToRecord( r, "DATA_DESC_ID" ) ;
1362    timeRF.attachToRecord( r, "TIME" ) ;
1363    timeCentroidRF.attachToRecord( r, "TIME_CENTROID" ) ;
1364    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1365    exposureRF.attachToRecord( r, "EXPOSURE" ) ;
1366    fieldIdRF.attachToRecord( r, "FIELD_ID" ) ;
1367    feed1RF.attachToRecord( r, "FEED1" ) ;
1368    feed2RF.attachToRecord( r, "FEED2" ) ;
1369    scanNumberRF.attachToRecord( r, "SCAN_NUMBER" ) ;
1370    stateIdRF.attachToRecord( r, "STATE_ID" ) ;
1371
1372    // constant values
1373    //Int id = 0 ;
1374    RecordFieldPtr<Int> intRF( r, "OBSERVATION_ID" ) ;
1375    *intRF = 0 ;
1376    intRF.attachToRecord( r, "ANTENNA1" ) ;
1377    *intRF = 0 ;
1378    intRF.attachToRecord( r, "ANTENNA2" ) ;
1379    *intRF = 0 ;
1380    intRF.attachToRecord( r, "ARRAY_ID" ) ;
1381    *intRF = 0 ;
1382    intRF.attachToRecord( r, "PROCESSOR_ID" ) ;
1383    *intRF = 0 ;
1384    RecordFieldPtr< Vector<Double> > arrayRF( r, "UVW" ) ;
1385    arrayRF.define( Vector<Double>( 3, 0.0 ) ) ;
1386  }
1387  void attachPointing()
1388  {
1389    porow = TableRow( potab ) ;
1390    TableRecord &r = porow.record() ;
1391    poNumPolyRF.attachToRecord( r, "NUM_POLY" ) ;
1392    poTimeRF.attachToRecord( r, "TIME" ) ;
1393    poTimeOriginRF.attachToRecord( r, "TIME_ORIGIN" ) ;
1394    poIntervalRF.attachToRecord( r, "INTERVAL" ) ;
1395    poNameRF.attachToRecord( r, "NAME" ) ;
1396    poDirectionRF.attachToRecord( r, "DIRECTION" ) ;
1397    poTargetRF.attachToRecord( r, "TARGET" ) ;
1398   
1399    // constant values
1400    RecordFieldPtr<Int> antIdRF( r, "ANTENNA_ID" ) ;
1401    *antIdRF = 0 ;
1402    RecordFieldPtr<Bool> trackingRF( r, "TRACKING" ) ;
1403    *trackingRF = True ;
1404  }
1405  void queryType( Int type, String &stype, Bool &b, Double &t, Double &l )
1406  {
1407    t = 0.0 ;
1408    l = 0.0 ;
1409
1410    String sep1="#" ;
1411    String sep2="," ;
1412    String target="OBSERVE_TARGET" ;
1413    String atmcal="CALIBRATE_TEMPERATURE" ;
1414    String onstr="ON_SOURCE" ;
1415    String offstr="OFF_SOURCE" ;
1416    String pswitch="POSITION_SWITCH" ;
1417    String nod="NOD" ;
1418    String fswitch="FREQUENCY_SWITCH" ;
1419    String sigstr="SIG" ;
1420    String refstr="REF" ;
1421    String unspecified="UNSPECIFIED" ;
1422    String ftlow="LOWER" ;
1423    String fthigh="HIGHER" ;
1424    switch ( type ) {
1425    case SrcType::PSON:
1426      stype = target+sep1+onstr+sep2+pswitch ;
1427      b = True ;
1428      break ;
1429    case SrcType::PSOFF:
1430      stype = target+sep1+offstr+sep2+pswitch ;
1431      b = False ;
1432      break ;
1433    case SrcType::NOD:
1434      stype = target+sep1+onstr+sep2+nod ;
1435      b = True ;
1436      break ;
1437    case SrcType::FSON:
1438      stype = target+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1439      b = True ;
1440      break ;
1441    case SrcType::FSOFF:
1442      stype = target+sep1+onstr+sep2+fswitch+sep1+refstr ;
1443      b = False ;
1444      break ;
1445    case SrcType::SKY:
1446      stype = atmcal+sep1+offstr+sep2+unspecified ;
1447      b = False ;
1448      break ;
1449    case SrcType::HOT:
1450      stype = atmcal+sep1+offstr+sep2+unspecified ;
1451      b = False ;
1452      break ;
1453    case SrcType::WARM:
1454      stype = atmcal+sep1+offstr+sep2+unspecified ;
1455      b = False ;
1456      break ;
1457    case SrcType::COLD:
1458      stype = atmcal+sep1+offstr+sep2+unspecified ;
1459      b = False ;
1460      break ;
1461    case SrcType::PONCAL:
1462      stype = atmcal+sep1+onstr+sep2+pswitch ;
1463      b = True ;
1464      break ;
1465    case SrcType::POFFCAL:
1466      stype = atmcal+sep1+offstr+sep2+pswitch ;
1467      b = False ;
1468      break ;
1469    case SrcType::NODCAL:
1470      stype = atmcal+sep1+onstr+sep2+nod ;
1471      b = True ;
1472      break ;
1473    case SrcType::FONCAL:
1474      stype = atmcal+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1475      b = True ;
1476      break ;
1477    case SrcType::FOFFCAL:
1478      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+refstr ;
1479      b = False ;
1480      break ;
1481    case SrcType::FSLO:
1482      stype = target+sep1+onstr+sep2+fswitch+sep1+ftlow ;
1483      b = True ;
1484      break ;
1485    case SrcType::FLOOFF:
1486      stype = target+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1487      b = False ;
1488      break ;
1489    case SrcType::FLOSKY:
1490      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1491      b = False ;
1492      break ;
1493    case SrcType::FLOHOT:
1494      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1495      b = False ;
1496      break ;
1497    case SrcType::FLOWARM:
1498      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1499      b = False ;
1500      break ;
1501    case SrcType::FLOCOLD:
1502      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1503      b = False ;
1504      break ;
1505    case SrcType::FSHI:
1506      stype = target+sep1+onstr+sep2+fswitch+sep1+fthigh ;
1507      b = True ;
1508      break ;
1509    case SrcType::FHIOFF:
1510      stype = target+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1511      b = False ;
1512      break ;
1513    case SrcType::FHISKY:
1514      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1515      b = False ;
1516      break ;
1517    case SrcType::FHIHOT:
1518      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1519      b = False ;
1520      break ;
1521    case SrcType::FHIWARM:
1522      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1523      b = False ;
1524      break ;
1525    case SrcType::FHICOLD:
1526      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1527      b = False ;
1528      break ;
1529    case SrcType::SIG:
1530      stype = target+sep1+onstr+sep2+unspecified ;
1531      b = True ;
1532      break ;
1533    case SrcType::REF:
1534      stype = target+sep1+offstr+sep2+unspecified ;
1535      b = False ;
1536      break ;
1537    default:
1538      stype = unspecified ;
1539      b = True ;
1540      break ;
1541    }
1542  }
1543  void initCorrProductTemplate()
1544  {
1545    Int n = 1 ;
1546    {
1547      Matrix<Int> c( 2, n, 0 ) ;
1548      corrProductTemplate[n] = c ;
1549    }
1550    n = 2 ;
1551    {
1552      Matrix<Int> c( 2, n, 0 ) ;
1553      c.column( 1 ) = 1 ;
1554      corrProductTemplate[n] = c ;
1555    }
1556    n = 4 ;
1557    {
1558      Matrix<Int> c( 2, n, 0 ) ;
1559      c( 0, 2 ) = 1 ;
1560      c( 0, 3 ) = 1 ;
1561      c( 1, 1 ) = 1 ;
1562      c( 1, 3 ) = 1 ;
1563      corrProductTemplate[n] = c ;
1564    }
1565  }
1566
1567  Table &ms;
1568  TableRow row;
1569  uInt rowidx;
1570  String fieldName;
1571  Int fieldId;
1572  Int srcId;
1573  Int defaultFieldId;
1574  Int spwId;
1575  Int feedId;
1576  Int subscan;
1577  CountedPtr<DataHolder> holder;
1578  String ptName;
1579  Bool useFloat;
1580  String poltype;
1581  Bool addScanrate_;
1582
1583  // MS subtables
1584  Table spwtab;
1585  Table statetab;
1586  Table ddtab;
1587  Table poltab;
1588  Table fieldtab;
1589  Table feedtab;
1590  Table potab;
1591
1592  // Scantable MAIN columns
1593  ROArrayColumn<Float> spectraCol;
1594  ROArrayColumn<Double> directionCol,scanRateCol,sourceDirectionCol;
1595  ROArrayColumn<uChar> flagtraCol;
1596  ROTableColumn tcalIdCol,intervalCol,flagRowCol,timeCol,freqIdCol,
1597    sourceNameCol,fieldNameCol;
1598
1599  // MS MAIN columns
1600  RecordFieldPtr<Int> dataDescIdRF,fieldIdRF,feed1RF,feed2RF,
1601    scanNumberRF,stateIdRF;
1602  RecordFieldPtr<Double> timeRF,timeCentroidRF,intervalRF,exposureRF;
1603
1604  // MS POINTING columns
1605  TableRow porow;
1606  RecordFieldPtr<Int> poNumPolyRF ;
1607  RecordFieldPtr<Double> poTimeRF,
1608    poTimeOriginRF,
1609    poIntervalRF ;
1610  RecordFieldPtr<String> poNameRF ;
1611  RecordFieldPtr< Matrix<Double> > poDirectionRF,
1612    poTargetRF ;
1613
1614  Vector<String> stateEntry;
1615  Block<Int> ddEntry;
1616  Block<Int> feedEntry;
1617  vector< Vector<Int> > polEntry;
1618  set<uInt> processedFreqId;
1619  set<uInt> processedIFNO;
1620  map<uInt,Double> refpix;
1621  map<uInt,Double> refval;
1622  map<uInt,Double> increment;
1623  MFrequency::Types freqframe;
1624  Record srcRec;
1625  map< Int, Matrix<Int> > corrProductTemplate;
1626  Vector<Double> pointingTimeList_;
1627  Int referenceBeam_;
1628};
1629
1630class BaseMSSysCalVisitor: public TableVisitor {
1631  uInt lastRecordNo;
1632  uInt lastBeamNo, lastIfNo, lastPolNo;
1633  Double lastTime;
1634protected:
1635  const Table &table;
1636  uInt count;
1637public:
1638  BaseMSSysCalVisitor(const Table &table)
1639    : table(table)
1640  {
1641    count = 0;
1642  }
1643 
1644  virtual void enterBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1645  virtual void leaveBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1646  virtual void enterIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1647  virtual void leaveIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1648  virtual void enterPolNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1649  virtual void leavePolNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1650  virtual void enterTime(const uInt /*recordNo*/, Double /*columnValue*/) { }
1651  virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) { }
1652
1653  virtual Bool visitRecord(const uInt /*recordNo*/,
1654                           const uInt /*beamNo*/,
1655                           const uInt /*ifNo*/,
1656                           const uInt /*polNo*/,
1657                           const Double /*time*/) { return True ;}
1658
1659  virtual Bool visit(Bool isFirst, const uInt recordNo,
1660                     const uInt nCols, void const *const colValues[]) {
1661    uInt beamNo, ifNo, polNo;
1662    Double time;
1663    { // prologue
1664      uInt i = 0;
1665      {
1666        const uInt *col = (const uInt *)colValues[i++];
1667        beamNo = col[recordNo];
1668      }
1669      {
1670        const uInt *col = (const uInt *)colValues[i++];
1671        ifNo = col[recordNo];
1672      }
1673      {
1674        const Double *col = (const Double *)colValues[i++];
1675        time = col[recordNo];
1676      }
1677      {
1678        const uInt *col = (const uInt *)colValues[i++];
1679        polNo = col[recordNo];
1680      }
1681      assert(nCols == i);
1682    }
1683
1684    if (isFirst) {
1685      enterBeamNo(recordNo, beamNo);
1686      enterIfNo(recordNo, ifNo);
1687      enterTime(recordNo, time);
1688      enterPolNo(recordNo, polNo);
1689    } else {
1690      if (lastBeamNo != beamNo) {
1691        leavePolNo(lastRecordNo, lastPolNo);
1692        leaveTime(lastRecordNo, lastTime);
1693        leaveIfNo(lastRecordNo, lastIfNo);
1694        leaveBeamNo(lastRecordNo, lastBeamNo);
1695
1696        enterBeamNo(recordNo, beamNo);
1697        enterIfNo(recordNo, ifNo);
1698        enterTime(recordNo, time);
1699        enterPolNo(recordNo, polNo);
1700      } else if (lastIfNo != ifNo) {
1701        leavePolNo(lastRecordNo, lastPolNo);
1702        leaveTime(lastRecordNo, lastTime);
1703        leaveIfNo(lastRecordNo, lastIfNo);
1704       
1705        enterIfNo(recordNo, ifNo);
1706        enterTime(recordNo, time);
1707        enterPolNo(recordNo, polNo);
1708      } else if (lastTime != time) {
1709        leavePolNo(lastRecordNo, lastPolNo);
1710        leaveTime(lastRecordNo, lastTime);
1711
1712        enterTime(recordNo, time);
1713        enterPolNo(recordNo, polNo);
1714      } else if (lastPolNo != polNo) {
1715        leavePolNo(lastRecordNo, lastPolNo);
1716        enterPolNo(recordNo, polNo);
1717      }
1718    }
1719    count++;
1720    Bool result = visitRecord(recordNo, beamNo, ifNo, polNo, time);
1721
1722    { // epilogue
1723      lastRecordNo = recordNo;
1724
1725      lastBeamNo = beamNo;
1726      lastIfNo = ifNo;
1727      lastPolNo = polNo;
1728      lastTime = time;
1729    }
1730    return result ;
1731  }
1732
1733  virtual void finish() {
1734    if (count > 0) {
1735      leavePolNo(lastRecordNo, lastPolNo);
1736      leaveTime(lastRecordNo, lastTime);
1737      leaveIfNo(lastRecordNo, lastIfNo);
1738      leaveBeamNo(lastRecordNo, lastBeamNo);
1739    }
1740  }
1741};
1742
1743class BaseTsysHolder
1744{
1745public:
1746  BaseTsysHolder( ROArrayColumn<Float> &tsysCol )
1747    : col( tsysCol ),
1748      nchan(0)
1749  {
1750    reset() ;
1751  }
1752  virtual ~BaseTsysHolder() {}
1753  virtual Array<Float> getTsys() = 0 ;
1754  void setNchan( uInt n ) { nchan = n ; }
1755  void appendTsys( uInt row )
1756  {
1757    Vector<Float> v = col( row ) ;
1758    uInt len = tsys.nrow() ;
1759    tsys.resize( len+1, nchan, True ) ;
1760    if ( v.nelements() == nchan )
1761      tsys.row( len ) = v ;
1762    else
1763      tsys.row( len ) = v[0] ;
1764  }
1765  void setTsys( uInt row, uInt idx )
1766  {
1767    if ( idx >= nrow() )
1768      appendTsys( row ) ;
1769    else {
1770      Vector<Float> v = col( row ) ;
1771      if ( v.nelements() == nchan )
1772        tsys.row( idx ) = v ;
1773      else
1774        tsys.row( idx ) = v[0] ;
1775    }
1776  }
1777  void reset()
1778  {
1779    tsys.resize() ;
1780  }
1781  uInt nrow() { return tsys.nrow() ; }
1782  Bool isEffective()
1783  {
1784    return ( !(tsys.empty()) && anyNE( tsys, (Float)1.0 ) ) ;
1785  }
1786  BaseTsysHolder &operator= ( const BaseTsysHolder &v )
1787  {
1788    if ( this != &v )
1789      tsys.assign( v.tsys ) ;
1790    return *this ;
1791  }
1792protected:
1793  ROArrayColumn<Float> col ;
1794  Matrix<Float> tsys ;
1795  uInt nchan ;
1796};
1797
1798class TsysHolder : public BaseTsysHolder
1799{
1800public:
1801  TsysHolder( ROArrayColumn<Float> &tsysCol )
1802    : BaseTsysHolder( tsysCol )
1803  {}
1804  virtual ~TsysHolder() {}
1805  virtual Array<Float> getTsys()
1806  {
1807    return tsys.column( 0 ) ;
1808  }
1809};
1810
1811class TsysSpectrumHolder : public BaseTsysHolder
1812{
1813public:
1814  TsysSpectrumHolder( ROArrayColumn<Float> &tsysCol )
1815    : BaseTsysHolder( tsysCol )
1816  {}
1817  virtual ~TsysSpectrumHolder() {}
1818  virtual Array<Float> getTsys()
1819  {
1820    return tsys ;
1821  }
1822};
1823
1824class BaseTcalProcessor
1825{
1826public:
1827  BaseTcalProcessor( ROArrayColumn<Float> &tcalCol )
1828    : col_( tcalCol )
1829  {}
1830  virtual ~BaseTcalProcessor() {}
1831  void setTcalId( Vector<uInt> &tcalId ) { id_.assign( tcalId ) ; }
1832  virtual Array<Float> getTcal() = 0 ;
1833protected:
1834  ROArrayColumn<Float> col_ ;
1835  Vector<uInt> id_ ;
1836};
1837
1838class TcalProcessor : public BaseTcalProcessor
1839{
1840public:
1841  TcalProcessor( ROArrayColumn<Float> &tcalCol )
1842    : BaseTcalProcessor( tcalCol )
1843  {}
1844  virtual ~TcalProcessor() {}
1845  virtual Array<Float> getTcal()
1846  {
1847    uInt npol = id_.nelements() ;
1848    Vector<Float> tcal( npol ) ;
1849    for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
1850      tcal[ipol] = col_( id_[ipol] ).data()[0] ;
1851    //cout << "TcalProcessor: tcal = " << tcal << endl ;
1852    return tcal ;
1853  }
1854};
1855
1856class TcalSpectrumProcessor : public BaseTcalProcessor
1857{
1858public:
1859  TcalSpectrumProcessor( ROArrayColumn<Float> &tcalCol )
1860    : BaseTcalProcessor( tcalCol )
1861  {}
1862  virtual ~TcalSpectrumProcessor() {}
1863  virtual Array<Float> getTcal()
1864  {
1865    uInt npol = id_.nelements() ;
1866    //Vector<Float> tcal0 = col_( 0 ) ;
1867    Vector<Float> tcal0 = col_( id_[0] ) ;
1868    uInt nchan = tcal0.nelements() ;
1869    Matrix<Float> tcal( npol, nchan ) ;
1870    tcal.row( 0 ) = tcal0 ;
1871    for ( uInt ipol = 1 ; ipol < npol ; ipol++ )
1872      tcal.row( ipol ) = col_( id_[ipol] ) ;
1873    return tcal ;
1874  }
1875};
1876
1877class MSSysCalVisitor : public BaseMSSysCalVisitor
1878{
1879public:
1880  MSSysCalVisitor( const Table &from, Table &to )
1881    : BaseMSSysCalVisitor( from ),
1882      sctab( to ),
1883      rowidx( 0 ),
1884      polno_()
1885  {
1886    scrow = TableRow( sctab ) ;
1887
1888    lastTcalId.resize() ;
1889    theTcalId.resize() ;
1890    startTime = 0.0 ;
1891    endTime = 0.0 ;
1892
1893    const TableRecord &keys = table.keywordSet() ;
1894    Table tcalTable = keys.asTable( "TCAL" ) ;
1895    tcalCol.attach( tcalTable, "TCAL" ) ;
1896    tsysCol.attach( table, "TSYS" ) ;
1897    tcalIdCol.attach( table, "TCAL_ID" ) ;
1898    intervalCol.attach( table, "INTERVAL" ) ;
1899    effectiveTcal.resize( tcalTable.nrow() ) ;
1900    for ( uInt irow = 0 ; irow < tcalTable.nrow() ; irow++ ) {
1901      if ( allEQ( tcalCol( irow ), (Float)1.0 ) )
1902        effectiveTcal[irow] = False ;
1903      else
1904        effectiveTcal[irow] = True ;
1905    }
1906   
1907    TableRecord &r = scrow.record() ;
1908    RecordFieldPtr<Int> antennaIdRF( r, "ANTENNA_ID" ) ;
1909    *antennaIdRF = 0 ;
1910    feedIdRF.attachToRecord( r, "FEED_ID" ) ;
1911    specWinIdRF.attachToRecord( r, "SPECTRAL_WINDOW_ID" ) ;
1912    timeRF.attachToRecord( r, "TIME" ) ;
1913    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1914    if ( r.isDefined( "TCAL" ) ) {
1915      tcalRF.attachToRecord( r, "TCAL" ) ;
1916      tcalProcessor = new TcalProcessor( tcalCol ) ;
1917    }
1918    else if ( r.isDefined( "TCAL_SPECTRUM" ) ) {
1919      tcalRF.attachToRecord( r, "TCAL_SPECTRUM" ) ;
1920      tcalProcessor = new TcalSpectrumProcessor( tcalCol ) ;
1921    }
1922    if ( r.isDefined( "TSYS" ) ) {
1923      tsysRF.attachToRecord( r, "TSYS" ) ;
1924      theTsys = new TsysHolder( tsysCol ) ;
1925      lastTsys = new TsysHolder( tsysCol ) ;
1926    }
1927    else {
1928      tsysRF.attachToRecord( r, "TSYS_SPECTRUM" ) ;
1929      theTsys = new TsysSpectrumHolder( tsysCol ) ;
1930      lastTsys = new TsysSpectrumHolder( tsysCol ) ;
1931    }
1932
1933  }
1934
1935  virtual void enterBeamNo(const uInt /*recordNo*/, uInt columnValue)
1936  {
1937    *feedIdRF = (Int)columnValue ;
1938  }
1939  virtual void leaveBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/)
1940  {
1941  }
1942  virtual void enterIfNo(const uInt recordNo, uInt columnValue)
1943  {
1944    //cout << "enterIfNo" << endl ;
1945    ROArrayColumn<Float> sp( table, "SPECTRA" ) ;
1946    uInt nchan = sp( recordNo ).nelements() ;
1947    theTsys->setNchan( nchan ) ;
1948    lastTsys->setNchan( nchan ) ;
1949
1950    *specWinIdRF = (Int)columnValue ;
1951  }
1952  virtual void leaveIfNo(const uInt /*recordNo*/, uInt /*columnValue*/)
1953  {
1954    //cout << "leaveIfNo" << endl ;
1955    post() ;
1956    reset(true);
1957    startTime = 0.0 ;
1958    endTime = 0.0 ;
1959  }
1960  virtual void enterTime(const uInt recordNo, Double columnValue)
1961  {
1962    //cout << "enterTime" << endl ;
1963    interval = intervalCol.asdouble( recordNo ) ;
1964    // start time and end time
1965    if ( startTime == 0.0 ) {
1966      startTime = columnValue * 86400.0 - 0.5 * interval ;
1967      endTime = columnValue * 86400.0 + 0.5 * interval ;
1968    }
1969  }
1970  virtual void leaveTime(const uInt /*recordNo*/, Double columnValue)
1971  {
1972    //cout << "leaveTime" << endl ;
1973    if ( isUpdated() ) {
1974      post() ;
1975      *lastTsys = *theTsys ;
1976      lastTcalId = theTcalId ;
1977      reset(false);
1978      startTime = columnValue * 86400.0 - 0.5 * interval ;
1979      endTime = columnValue * 86400.0 + 0.5 * interval ;
1980    }
1981    else {
1982      endTime = columnValue * 86400.0 + 0.5 * interval ;
1983    }
1984  }
1985  virtual void enterPolNo(const uInt recordNo, uInt columnValue)
1986  {
1987    //cout << "enterPolNo" << endl ;
1988    Vector<Float> tsys = tsysCol( recordNo ) ;
1989    uInt tcalId = tcalIdCol.asuInt( recordNo ) ;
1990    polno_.insert( columnValue ) ;
1991    uInt numPol = polno_.size() ;
1992    if ( lastTsys->nrow() < numPol )
1993      lastTsys->appendTsys( recordNo ) ;
1994    if ( lastTcalId.nelements() <= numPol )
1995      appendTcalId( lastTcalId, tcalId, numPol-1 ) ;
1996    if ( theTsys->nrow() < numPol )
1997      theTsys->appendTsys( recordNo ) ;
1998    else {
1999      theTsys->setTsys( recordNo, numPol-1 ) ;
2000    }
2001    if ( theTcalId.nelements() < numPol )
2002      appendTcalId( theTcalId, tcalId, numPol-1 ) ;
2003    else
2004      setTcalId( theTcalId, tcalId, numPol-1 ) ;
2005  }
2006  virtual void leavePolNo( const uInt /*recordNo*/, uInt /*columnValue*/ )
2007  {
2008  }
2009   
2010private:
2011  void reset(bool completely)
2012  {
2013    if (completely) {
2014      lastTsys->reset() ;
2015      lastTcalId.resize() ;
2016    }
2017    theTsys->reset() ;
2018    theTcalId.resize() ;
2019    polno_.clear();
2020  }
2021  void appendTcalId( Vector<uInt> &v, uInt &elem, uInt polId )
2022  {
2023    v.resize( polId+1, True ) ;
2024    v[polId] = elem ;
2025  }
2026  void setTcalId( Vector<uInt> &v, uInt &elem, uInt polId )
2027  {
2028    v[polId] = elem ;
2029  }
2030  void post()
2031  {
2032    // check if given Tcal and Tsys is effective
2033    Bool isEffective = False ;
2034    for ( uInt ipol = 0 ; ipol < lastTcalId.nelements() ; ipol++ ) {
2035      if ( effectiveTcal[lastTcalId[ipol]] ) {
2036        isEffective = True ;
2037        break ;
2038      }
2039    }
2040    if ( !isEffective ) {
2041      if ( !(lastTsys->isEffective()) )
2042        return ;
2043    }
2044
2045    //cout << " interval: " << (endTime-startTime) << " lastTcalId = " << lastTcalId << endl ;
2046    Double midTime = 0.5 * ( startTime + endTime ) ;
2047    Double interval = endTime - startTime ;
2048    *timeRF = midTime ;
2049    *intervalRF = interval ;
2050    tcalProcessor->setTcalId( lastTcalId ) ;
2051    Array<Float> tcal = tcalProcessor->getTcal() ;
2052    Array<Float> tsys = lastTsys->getTsys() ;
2053    tcalRF.define( tcal ) ;
2054    tsysRF.define( tsys ) ;
2055    sctab.addRow( 1, True ) ;
2056    scrow.put( rowidx ) ;
2057    rowidx++ ;
2058  }
2059 
2060  Bool isUpdated()
2061  {
2062    Bool ret = (anyNE( theTcalId, lastTcalId ) || anyNE( theTsys->getTsys(), lastTsys->getTsys() )) ;
2063    return ret ;
2064  }
2065
2066  Table &sctab;
2067  TableRow scrow;
2068  uInt rowidx;
2069
2070  Double startTime,endTime,interval;
2071 
2072  CountedPtr<BaseTsysHolder> lastTsys,theTsys;
2073  Vector<uInt> lastTcalId,theTcalId;
2074  set<uInt> polno_;
2075  CountedPtr<BaseTcalProcessor> tcalProcessor ;
2076  Vector<Bool> effectiveTcal;
2077
2078  RecordFieldPtr<Int> feedIdRF,specWinIdRF;
2079  RecordFieldPtr<Double> timeRF,intervalRF;
2080  RecordFieldPtr< Array<Float> > tcalRF,tsysRF;
2081
2082  ROArrayColumn<Float> tsysCol,tcalCol;
2083  ROTableColumn tcalIdCol,intervalCol;
2084};
2085
2086MSWriter::MSWriter(CountedPtr<Scantable> stable)
2087  : table_(stable),
2088    mstable_(NULL),
2089    isWeather_(False),
2090    tcalSpec_(False),
2091    tsysSpec_(False),
2092    ptTabName_("")
2093{
2094  os_ = LogIO() ;
2095  os_.origin( LogOrigin( "MSWriter", "MSWriter()", WHERE ) ) ;
2096//   os_ << "MSWriter::MSWriter()" << LogIO::POST ;
2097
2098  // initialize writer
2099  init() ;
2100}
2101
2102MSWriter::~MSWriter()
2103{
2104  os_.origin( LogOrigin( "MSWriter", "~MSWriter()", WHERE ) ) ;
2105//   os_ << "MSWriter::~MSWriter()" << LogIO::POST ;
2106
2107  if ( mstable_ != 0 )
2108    delete mstable_ ;
2109}
2110
2111bool MSWriter::write(const string& filename, const Record& rec)
2112{
2113  os_.origin( LogOrigin( "MSWriter", "write()", WHERE ) ) ;
2114  //double startSec = mathutil::gettimeofday_sec() ;
2115  //os_ << "start MSWriter::write() startSec=" << startSec << LogIO::POST ;
2116
2117  filename_ = filename ;
2118
2119  // parsing MS options
2120  Bool overwrite = False ;
2121  if ( rec.isDefined( "ms" ) ) {
2122    Record msrec = rec.asRecord( "ms" ) ;
2123    if ( msrec.isDefined( "overwrite" ) ) {
2124      overwrite = msrec.asBool( "overwrite" ) ;
2125    }
2126  }
2127
2128  os_ << "Parsing MS options" << endl ;
2129  os_ << "   overwrite = " << overwrite << LogIO::POST ;
2130
2131  File file( filename_ ) ;
2132  if ( file.exists() ) {
2133    if ( overwrite ) {
2134      os_ << filename_ << " exists. Overwrite existing data... " << LogIO::POST ;
2135      if ( file.isRegular() ) RegularFile(file).remove() ;
2136      else if ( file.isDirectory() ) Directory(file).removeRecursive() ;
2137      else SymLink(file).remove() ;
2138    }
2139    else {
2140      os_ << LogIO::SEVERE << "ERROR: " << filename_ << " exists..." << LogIO::POST ;
2141      return False ;
2142    }
2143  }
2144
2145  // set up MS
2146  setupMS() ;
2147 
2148  // subtables
2149  // OBSERVATION
2150  fillObservation() ;
2151
2152  // ANTENNA
2153  fillAntenna() ;
2154
2155  // PROCESSOR
2156  fillProcessor() ;
2157
2158  // SOURCE
2159  fillSource() ;
2160
2161  // WEATHER
2162  if ( isWeather_ )
2163    fillWeather() ;
2164
2165  // SYSCAL
2166  fillSysCal() ;
2167
2168  /***
2169   * Start iteration using TableVisitor
2170   ***/
2171  {
2172    static const char *cols[] = {
2173      "FIELDNAME", "BEAMNO", "SCANNO", "IFNO", "SRCTYPE", "CYCLENO", "TIME",
2174      "POLNO",
2175      NULL
2176    };
2177    static const TypeManagerImpl<uInt> tmUInt;
2178    static const TypeManagerImpl<Int> tmInt;
2179    static const TypeManagerImpl<Double> tmDouble;
2180    static const TypeManagerImpl<String> tmString;
2181    static const TypeManager *const tms[] = {
2182      &tmString, &tmUInt, &tmUInt, &tmUInt, &tmInt, &tmUInt, &tmDouble, &tmUInt, NULL
2183    };
2184    //double t0 = mathutil::gettimeofday_sec() ;
2185    MSWriterVisitor myVisitor(table_->table(),*mstable_);
2186    //double t1 = mathutil::gettimeofday_sec() ;
2187    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2188    String dataColName = "FLOAT_DATA" ;
2189    if ( useData_ )
2190      dataColName = "DATA" ;
2191    myVisitor.dataColumnName( dataColName ) ;
2192    myVisitor.pointingTableName( ptTabName_ ) ;
2193    myVisitor.setSourceRecord( srcRec_ ) ;
2194    //double t2 = mathutil::gettimeofday_sec() ;
2195    traverseTable(table_->table(), cols, tms, &myVisitor);
2196    //double t3 = mathutil::gettimeofday_sec() ;
2197    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2198  }
2199  /***
2200   * End iteration using TableVisitor
2201   ***/
2202
2203  // ASDM tables
2204  const TableRecord &stKeys = table_->table().keywordSet() ;
2205  TableRecord &msKeys = mstable_->rwKeywordSet() ;
2206  uInt nfields = stKeys.nfields() ;
2207  for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) {
2208    String kname = stKeys.name( ifield ) ;
2209    if ( kname.find( "ASDM" ) != String::npos ) {
2210      String asdmpath = stKeys.asString( ifield ) ;
2211      os_ << "found ASDM table: " << asdmpath << LogIO::POST ;
2212      if ( Table::isReadable( asdmpath ) ) {
2213        Table newAsdmTab( asdmpath, Table::Old ) ;
2214        newAsdmTab.copy( filename_+"/"+kname, Table::New ) ;
2215        os_ << "add subtable: " << kname << LogIO::POST ;
2216        msKeys.defineTable( kname, Table( filename_+"/"+kname, Table::Old ) ) ;
2217      }
2218    }
2219  }
2220
2221  // replace POINTING table with original one if exists
2222  if ( ptTabName_ != "" ) {
2223    delete mstable_ ;
2224    mstable_ = 0 ;
2225    Table newPtTab( ptTabName_, Table::Old ) ;
2226    newPtTab.copy( filename_+"/POINTING", Table::New ) ;
2227  }
2228
2229  //double endSec = mathutil::gettimeofday_sec() ;
2230  //os_ << "end MSWriter::write() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2231
2232  os_ << "Exported data as MS" << LogIO::POST ;
2233
2234  return True ;
2235}
2236
2237void MSWriter::init()
2238{
2239//   os_.origin( LogOrigin( "MSWriter", "init()", WHERE ) ) ;
2240//   double startSec = mathutil::gettimeofday_sec() ;
2241//   os_ << "start MSWriter::init() startSec=" << startSec << LogIO::POST ;
2242 
2243  // access to scantable
2244  header_ = table_->getHeader() ;
2245
2246  // FLOAT_DATA? or DATA?
2247  if ( header_.npol > 2 ) {
2248    useFloatData_ = False ;
2249    useData_ = True ;
2250  }
2251  else {
2252    useFloatData_ = True ;
2253    useData_ = False ;
2254  }
2255
2256  // polarization type
2257  polType_ = header_.poltype ;
2258  if ( polType_ == "" )
2259    polType_ = "stokes" ;
2260  else if ( polType_.find( "linear" ) != String::npos )
2261    polType_ = "linear" ;
2262  else if ( polType_.find( "circular" ) != String::npos )
2263    polType_ = "circular" ;
2264  else if ( polType_.find( "stokes" ) != String::npos )
2265    polType_ = "stokes" ;
2266  else if ( polType_.find( "linpol" ) != String::npos )
2267    polType_ = "linpol" ;
2268  else
2269    polType_ = "notype" ;
2270
2271  // Check if some subtables are exists
2272  Bool isTcal = False ;
2273  if ( table_->tcal().table().nrow() != 0 ) {
2274    ROTableColumn col( table_->tcal().table(), "TCAL" ) ;
2275    if ( col.isDefined( 0 ) ) {
2276      os_ << "TCAL table exists: nrow=" << table_->tcal().table().nrow() << LogIO::POST ;
2277      isTcal = True ;
2278    }
2279    else {
2280      os_ << "No TCAL rows" << LogIO::POST ;
2281    }
2282  }
2283  else {
2284    os_ << "No TCAL rows" << LogIO::POST ;
2285  }
2286  if ( table_->weather().table().nrow() != 0 ) {
2287    ROTableColumn col( table_->weather().table(), "TEMPERATURE" ) ;
2288    if ( col.isDefined( 0 ) ) {
2289      os_ << "WEATHER table exists: nrow=" << table_->weather().table().nrow() << LogIO::POST ;
2290      isWeather_ =True ;
2291    }
2292    else {
2293      os_ << "No WEATHER rows" << LogIO::POST ;
2294    }
2295  }
2296  else {
2297    os_ << "No WEATHER rows" << LogIO::POST ;
2298  }
2299
2300  // Are TCAL_SPECTRUM and TSYS_SPECTRUM necessary?
2301  if ( header_.nchan != 1 ) {
2302    if ( isTcal ) {
2303      // examine TCAL subtable
2304      Table tcaltab = table_->tcal().table() ;
2305      ROArrayColumn<Float> tcalCol( tcaltab, "TCAL" ) ;
2306      for ( uInt irow = 0 ; irow < tcaltab.nrow() ; irow++ ) {
2307        if ( tcalCol( irow ).size() != 1 )
2308          tcalSpec_ = True ;
2309      }
2310    }
2311    // examine spectral data
2312    TableIterator iter0( table_->table(), "IFNO" ) ;
2313    while( !iter0.pastEnd() ) {
2314      Table t0( iter0.table() ) ;
2315      ROArrayColumn<Float> sharedFloatArrCol( t0, "SPECTRA" ) ;
2316      uInt len = sharedFloatArrCol( 0 ).size() ;
2317      if ( len != 1 ) {
2318        sharedFloatArrCol.attach( t0, "TSYS" ) ;
2319        if ( sharedFloatArrCol( 0 ).size() != 1 )
2320          tsysSpec_ = True ;
2321      }
2322      iter0.next() ;
2323    }
2324  }
2325
2326  // check if reference for POINTING table exists
2327  const TableRecord &rec = table_->table().keywordSet() ;
2328  if ( rec.isDefined( "POINTING" ) ) {
2329    ptTabName_ = rec.asString( "POINTING" ) ;
2330    if ( !Table::isReadable( ptTabName_ ) ) {
2331      ptTabName_ = "" ;
2332    }
2333  }
2334
2335//   double endSec = mathutil::gettimeofday_sec() ;
2336//   os_ << "end MSWriter::init() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2337}
2338
2339void MSWriter::setupMS()
2340{
2341//   os_.origin( LogOrigin( "MSWriter", "setupMS()", WHERE ) ) ;
2342//   double startSec = mathutil::gettimeofday_sec() ;
2343//   os_ << "start MSWriter::setupMS() startSec=" << startSec << LogIO::POST ;
2344 
2345  String dunit = table_->getHeader().fluxunit ;
2346
2347  TableDesc msDesc = MeasurementSet::requiredTableDesc() ;
2348  if ( useFloatData_ )
2349    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::FLOAT_DATA, 2 ) ;
2350  else if ( useData_ )
2351    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::DATA, 2 ) ;
2352
2353  SetupNewTable newtab( filename_, msDesc, Table::New ) ;
2354
2355  mstable_ = new MeasurementSet( newtab ) ;
2356
2357  TableColumn col ;
2358  if ( useFloatData_ )
2359    col.attach( *mstable_, "FLOAT_DATA" ) ;
2360  else if ( useData_ )
2361    col.attach( *mstable_, "DATA" ) ;
2362  col.rwKeywordSet().define( "UNIT", dunit ) ;
2363
2364  // create subtables
2365  TableDesc antennaDesc = MSAntenna::requiredTableDesc() ;
2366  SetupNewTable antennaTab( mstable_->antennaTableName(), antennaDesc, Table::New ) ;
2367  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::ANTENNA ), Table( antennaTab ) ) ;
2368
2369  TableDesc dataDescDesc = MSDataDescription::requiredTableDesc() ;
2370  SetupNewTable dataDescTab( mstable_->dataDescriptionTableName(), dataDescDesc, Table::New ) ;
2371  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DATA_DESCRIPTION ), Table( dataDescTab ) ) ;
2372
2373  TableDesc dopplerDesc = MSDoppler::requiredTableDesc() ;
2374  SetupNewTable dopplerTab( mstable_->dopplerTableName(), dopplerDesc, Table::New ) ;
2375  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DOPPLER ), Table( dopplerTab ) ) ;
2376
2377  TableDesc feedDesc = MSFeed::requiredTableDesc() ;
2378  SetupNewTable feedTab( mstable_->feedTableName(), feedDesc, Table::New ) ;
2379  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FEED ), Table( feedTab ) ) ;
2380
2381  TableDesc fieldDesc = MSField::requiredTableDesc() ;
2382  SetupNewTable fieldTab( mstable_->fieldTableName(), fieldDesc, Table::New ) ;
2383  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FIELD ), Table( fieldTab ) ) ;
2384
2385  TableDesc flagCmdDesc = MSFlagCmd::requiredTableDesc() ;
2386  SetupNewTable flagCmdTab( mstable_->flagCmdTableName(), flagCmdDesc, Table::New ) ;
2387  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FLAG_CMD ), Table( flagCmdTab ) ) ;
2388
2389  TableDesc freqOffsetDesc = MSFreqOffset::requiredTableDesc() ;
2390  SetupNewTable freqOffsetTab( mstable_->freqOffsetTableName(), freqOffsetDesc, Table::New ) ;
2391  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FREQ_OFFSET ), Table( freqOffsetTab ) ) ;
2392
2393  TableDesc historyDesc = MSHistory::requiredTableDesc() ;
2394  SetupNewTable historyTab( mstable_->historyTableName(), historyDesc, Table::New ) ;
2395  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::HISTORY ), Table( historyTab ) ) ;
2396
2397  TableDesc observationDesc = MSObservation::requiredTableDesc() ;
2398  SetupNewTable observationTab( mstable_->observationTableName(), observationDesc, Table::New ) ;
2399  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::OBSERVATION ), Table( observationTab ) ) ;
2400
2401  TableDesc pointingDesc = MSPointing::requiredTableDesc() ;
2402  SetupNewTable pointingTab( mstable_->pointingTableName(), pointingDesc, Table::New ) ;
2403  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POINTING ), Table( pointingTab ) ) ;
2404
2405  TableDesc polarizationDesc = MSPolarization::requiredTableDesc() ;
2406  SetupNewTable polarizationTab( mstable_->polarizationTableName(), polarizationDesc, Table::New ) ;
2407  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POLARIZATION ), Table( polarizationTab ) ) ;
2408
2409  TableDesc processorDesc = MSProcessor::requiredTableDesc() ;
2410  SetupNewTable processorTab( mstable_->processorTableName(), processorDesc, Table::New ) ;
2411  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::PROCESSOR ), Table( processorTab ) ) ;
2412
2413  TableDesc sourceDesc = MSSource::requiredTableDesc() ;
2414  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::TRANSITION, 1 ) ;
2415  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::REST_FREQUENCY, 1 ) ;
2416  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::SYSVEL, 1 ) ;
2417  SetupNewTable sourceTab( mstable_->sourceTableName(), sourceDesc, Table::New ) ;
2418  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SOURCE ), Table( sourceTab ) ) ;
2419
2420  TableDesc spwDesc = MSSpectralWindow::requiredTableDesc() ;
2421  SetupNewTable spwTab( mstable_->spectralWindowTableName(), spwDesc, Table::New ) ;
2422  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SPECTRAL_WINDOW ), Table( spwTab ) ) ;
2423
2424  TableDesc stateDesc = MSState::requiredTableDesc() ;
2425  SetupNewTable stateTab( mstable_->stateTableName(), stateDesc, Table::New ) ;
2426  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::STATE ), Table( stateTab ) ) ;
2427
2428  TableDesc sysCalDesc = MSSysCal::requiredTableDesc() ;
2429  if ( tcalSpec_ )
2430    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL_SPECTRUM, 2 ) ;
2431  else
2432    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL, 1 ) ;
2433  if ( tsysSpec_ )
2434    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS_SPECTRUM, 2 ) ;
2435  else
2436    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS, 1 ) ;
2437  SetupNewTable sysCalTab( mstable_->sysCalTableName(), sysCalDesc, Table::New ) ;
2438  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SYSCAL ), Table( sysCalTab ) ) ;
2439
2440  TableDesc weatherDesc = MSWeather::requiredTableDesc() ;
2441  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::TEMPERATURE ) ;
2442  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::PRESSURE ) ;
2443  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::REL_HUMIDITY ) ;
2444  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_SPEED ) ;
2445  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_DIRECTION ) ;
2446  SetupNewTable weatherTab( mstable_->weatherTableName(), weatherDesc, Table::New ) ;
2447  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::WEATHER ), Table( weatherTab ) ) ;
2448
2449  mstable_->initRefs() ;
2450
2451//   double endSec = mathutil::gettimeofday_sec() ;
2452//   os_ << "end MSWriter::setupMS() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2453}
2454
2455void MSWriter::fillObservation()
2456{
2457  //double startSec = mathutil::gettimeofday_sec() ;
2458  //os_ << "start MSWriter::fillObservation() startSec=" << startSec << LogIO::POST ;
2459
2460  // only 1 row
2461  mstable_->observation().addRow( 1, True ) ;
2462  MSObservationColumns msObsCols( mstable_->observation() ) ;
2463  msObsCols.observer().put( 0, header_.observer ) ;
2464  // tentatively put antennaname (from ANTENNA subtable)
2465  String hAntennaName = header_.antennaname ;
2466  String::size_type pos = hAntennaName.find( "//" ) ;
2467  String telescopeName ;
2468  if ( pos != String::npos ) {
2469    telescopeName = hAntennaName.substr( 0, pos ) ;
2470  }
2471  else {
2472    pos = hAntennaName.find( "@" ) ;
2473    telescopeName = hAntennaName.substr( 0, pos ) ;
2474  }
2475//   os_ << "telescopeName = " << telescopeName << LogIO::POST ;
2476  msObsCols.telescopeName().put( 0, telescopeName ) ;
2477  msObsCols.project().put( 0, header_.project ) ;
2478  //ScalarMeasColumn<MEpoch> timeCol( table_->table().sort("TIME"), "TIME" ) ;
2479  Table sortedtable = table_->table().sort("TIME") ;
2480  ScalarMeasColumn<MEpoch> timeCol( sortedtable, "TIME" ) ;
2481  Vector<MEpoch> trange( 2 ) ;
2482  trange[0] = timeCol( 0 ) ;
2483  trange[1] = timeCol( table_->nrow()-1 ) ;
2484  msObsCols.timeRangeMeas().put( 0, trange ) ;
2485
2486  //double endSec = mathutil::gettimeofday_sec() ;
2487  //os_ << "end MSWriter::fillObservation() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2488}
2489
2490void MSWriter::antennaProperty( String &name, String &m, String &t, Double &d )
2491{
2492  name.upcase() ;
2493 
2494  m = "ALT-AZ" ;
2495  t = "GROUND-BASED" ;
2496  if ( name.matches( Regex( "DV[0-9]+$" ) )
2497       || name.matches( Regex( "DA[0-9]+$" ) )
2498       || name.matches( Regex( "PM[0-9]+$" ) ) )
2499    d = 12.0 ;
2500  else if ( name.matches( Regex( "CM[0-9]+$" ) ) )
2501    d = 7.0 ;
2502  else if ( name.contains( "GBT" ) )
2503    d = 104.9 ;
2504  else if ( name.contains( "MOPRA" ) )
2505    d = 22.0 ;
2506  else if ( name.contains( "PKS" ) || name.contains( "PARKS" ) )
2507    d = 64.0 ;
2508  else if ( name.contains( "TIDBINBILLA" ) )
2509    d = 70.0 ;
2510  else if ( name.contains( "CEDUNA" ) )
2511    d = 30.0 ;
2512  else if ( name.contains( "HOBART" ) )
2513    d = 26.0 ;
2514  else if ( name.contains( "APEX" ) )
2515    d = 12.0 ;
2516  else if ( name.contains( "ASTE" ) )
2517    d = 10.0 ;
2518  else if ( name.contains( "NRO" ) )
2519    d = 45.0 ;
2520  else
2521    d = 1.0 ;
2522}
2523
2524void MSWriter::fillAntenna()
2525{
2526  //double startSec = mathutil::gettimeofday_sec() ;
2527  //os_ << "start MSWriter::fillAntenna() startSec=" << startSec << LogIO::POST ;
2528
2529  // only 1 row
2530  Table anttab = mstable_->antenna() ;
2531  anttab.addRow( 1, True ) ;
2532 
2533  Table &table = table_->table() ;
2534  const TableRecord &keys = table.keywordSet() ;
2535  String hAntName = keys.asString( "AntennaName" ) ;
2536  String::size_type pos = hAntName.find( "//" ) ;
2537  String antennaName ;
2538  String stationName ;
2539  if ( pos != String::npos ) {
2540    stationName = hAntName.substr( 0, pos ) ;
2541    hAntName = hAntName.substr( pos+2 ) ;
2542  }
2543  pos = hAntName.find( "@" ) ;
2544  if ( pos != String::npos ) {
2545    antennaName = hAntName.substr( 0, pos ) ;
2546    stationName = hAntName.substr( pos+1 ) ;
2547  }
2548  else {
2549    antennaName = hAntName ;
2550  }
2551  Vector<Double> antpos = keys.asArrayDouble( "AntennaPosition" ) ;
2552 
2553  String mount, atype ;
2554  Double diameter ;
2555  antennaProperty( antennaName, mount, atype, diameter ) ;
2556 
2557  TableRow tr( anttab ) ;
2558  TableRecord &r = tr.record() ;
2559  RecordFieldPtr<String> nameRF( r, "NAME" ) ;
2560  RecordFieldPtr<String> stationRF( r, "STATION" ) ;
2561  RecordFieldPtr<String> mountRF( r, "MOUNT" ) ;
2562  RecordFieldPtr<String> typeRF( r, "TYPE" ) ;
2563  RecordFieldPtr<Double> dishDiameterRF( r, "DISH_DIAMETER" ) ;
2564  RecordFieldPtr< Vector<Double> > positionRF( r, "POSITION" ) ;
2565  *nameRF = antennaName ;
2566  *mountRF = mount ;
2567  *typeRF = atype ;
2568  *dishDiameterRF = diameter ;
2569  *positionRF = antpos ;
2570  *stationRF = stationName ;
2571 
2572  tr.put( 0 ) ;
2573
2574  //double endSec = mathutil::gettimeofday_sec() ;
2575  //os_ << "end MSWriter::fillAntenna() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2576}
2577 
2578void MSWriter::fillProcessor()
2579{
2580//   double startSec = mathutil::gettimeofday_sec() ;
2581//   os_ << "start MSWriter::fillProcessor() startSec=" << startSec << LogIO::POST ;
2582 
2583  // only add empty 1 row
2584  MSProcessor msProc = mstable_->processor() ;
2585  msProc.addRow( 1, True ) ;
2586
2587//   double endSec = mathutil::gettimeofday_sec() ;
2588//   os_ << "end MSWriter::fillProcessor() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2589}
2590
2591void MSWriter::fillSource()
2592{
2593//   double startSec = mathutil::gettimeofday_sec() ;
2594//   os_ << "start MSWriter::fillSource() startSec=" << startSec << LogIO::POST ;
2595 
2596  // access to MS SOURCE subtable
2597  MSSource msSrc = mstable_->source() ;
2598
2599  // access to MOLECULE subtable
2600  STMolecules stm = table_->molecules() ;
2601
2602  Int srcId = 0 ;
2603
2604  // row based
2605  TableRow row( msSrc ) ;
2606  TableRecord &rec = row.record() ;
2607  RecordFieldPtr<Int> srcidRF( rec, "SOURCE_ID" ) ;
2608  RecordFieldPtr<String> nameRF( rec, "NAME" ) ;
2609  RecordFieldPtr< Array<Double> > srcpmRF( rec, "PROPER_MOTION" ) ;
2610  RecordFieldPtr< Array<Double> > srcdirRF( rec, "DIRECTION" ) ;
2611  RecordFieldPtr<Int> numlineRF( rec, "NUM_LINES" ) ;
2612  RecordFieldPtr< Array<Double> > restfreqRF( rec, "REST_FREQUENCY" ) ;
2613  RecordFieldPtr< Array<Double> > sysvelRF( rec, "SYSVEL" ) ;
2614  RecordFieldPtr< Array<String> > transitionRF( rec, "TRANSITION" ) ;
2615  RecordFieldPtr<Double> timeRF( rec, "TIME" ) ;
2616  RecordFieldPtr<Double> intervalRF( rec, "INTERVAL" ) ;
2617  RecordFieldPtr<Int> spwidRF( rec, "SPECTRAL_WINDOW_ID" ) ;
2618
2619  //
2620  // ITERATION: SRCNAME
2621  //
2622  TableIterator iter0( table_->table(), "SRCNAME" ) ;
2623  while( !iter0.pastEnd() ) {
2624    //Table t0( iter0.table() ) ;
2625    Table t0 =  iter0.table()  ;
2626
2627    // get necessary information
2628    ROScalarColumn<String> srcNameCol( t0, "SRCNAME" ) ;
2629    String srcName = srcNameCol( 0 ) ;
2630    ROArrayColumn<Double> sharedDArrRCol( t0, "SRCPROPERMOTION" ) ;
2631    Vector<Double> srcPM = sharedDArrRCol( 0 ) ;
2632    sharedDArrRCol.attach( t0, "SRCDIRECTION" ) ;
2633    Vector<Double> srcDir = sharedDArrRCol( 0 ) ;
2634    ROScalarColumn<Double> srcVelCol( t0, "SRCVELOCITY" ) ;
2635    Double srcVel = srcVelCol( 0 ) ;
2636    srcRec_.define( srcName, srcId ) ;
2637
2638    // NAME
2639    *nameRF = srcName ;
2640
2641    // SOURCE_ID
2642    *srcidRF = srcId ;
2643
2644    // PROPER_MOTION
2645    *srcpmRF = srcPM ;
2646   
2647    // DIRECTION
2648    *srcdirRF = srcDir ;
2649
2650    //
2651    // ITERATION: MOLECULE_ID
2652    //
2653    TableIterator iter1( t0, "MOLECULE_ID" ) ;
2654    while( !iter1.pastEnd() ) {
2655      //Table t1( iter1.table() ) ;
2656      Table t1 = iter1.table() ;
2657
2658      // get necessary information
2659      Vector<Double> restFreq ;
2660      Vector<String> molName ;
2661      Vector<String> fMolName ;
2662      ROScalarColumn<uInt> molIdCol( t1, "MOLECULE_ID" ) ;
2663      uInt molId = molIdCol( 0 ) ;
2664      stm.getEntry( restFreq, molName, fMolName, molId ) ;
2665
2666      uInt numFreq = restFreq.size() ;
2667     
2668      // NUM_LINES
2669      *numlineRF = numFreq ;
2670
2671      // REST_FREQUENCY
2672      restfreqRF.define(restFreq);
2673
2674      // TRANSITION
2675      Vector<String> transition ;
2676      if ( fMolName.size() != 0 ) {
2677        transition = fMolName ;
2678      }
2679      else if ( molName.size() != 0 ) {
2680        transition = molName ;
2681      }
2682      else {
2683        transition.resize( numFreq ) ;
2684        transition = "" ;
2685      }
2686      transitionRF.define(transition);
2687
2688      // SYSVEL
2689      Vector<Double> sysvelArr( numFreq, srcVel ) ;
2690      sysvelRF.define(sysvelArr);
2691
2692      //
2693      // ITERATION: IFNO
2694      //
2695      TableIterator iter2( t1, "IFNO" ) ;
2696      while( !iter2.pastEnd() ) {
2697        //Table t2( iter2.table() ) ;
2698        Table t2 = iter2.table() ;
2699        uInt nrow = msSrc.nrow() ;
2700
2701        // get necessary information
2702        ROScalarColumn<uInt> ifNoCol( t2, "IFNO" ) ;
2703        uInt ifno = ifNoCol( 0 ) ; // IFNO = SPECTRAL_WINDOW_ID
2704        Double midTime ;
2705        Double interval ;
2706        getValidTimeRange( midTime, interval, t2 ) ;
2707
2708        // fill SPECTRAL_WINDOW_ID
2709        *spwidRF = ifno ;
2710
2711        // fill TIME, INTERVAL
2712        *timeRF = midTime ;
2713        *intervalRF = interval ;
2714
2715        // add row
2716        msSrc.addRow( 1, True ) ;
2717        row.put( nrow ) ;
2718
2719        iter2.next() ;
2720      }
2721
2722      iter1.next() ;
2723    }
2724
2725    // increment srcId if SRCNAME changed
2726    srcId++ ;
2727
2728    iter0.next() ;
2729  }
2730
2731//   double endSec = mathutil::gettimeofday_sec() ;
2732//   os_ << "end MSWriter::fillSource() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2733}
2734
2735void MSWriter::fillWeather()
2736{
2737//   double startSec = mathutil::gettimeofday_sec() ;
2738//   os_ << "start MSWriter::fillWeather() startSec=" << startSec << LogIO::POST ;
2739
2740  // access to MS WEATHER subtable
2741  MSWeather msw = mstable_->weather() ;
2742
2743  // access to WEATHER subtable
2744  Table stw = table_->weather().table() ;
2745  uInt nrow = stw.nrow() ;
2746
2747  if ( nrow == 0 )
2748    return ;
2749
2750  msw.addRow( nrow, True ) ;
2751  MSWeatherColumns mswCols( msw ) ;
2752
2753  // ANTENNA_ID is always 0
2754  Vector<Int> antIdArr( nrow, 0 ) ;
2755  mswCols.antennaId().putColumn( antIdArr ) ;
2756
2757  // fill weather status
2758  ROScalarColumn<Float> sharedFloatCol( stw, "TEMPERATURE" ) ;
2759  mswCols.temperature().putColumn( sharedFloatCol ) ;
2760  sharedFloatCol.attach( stw, "PRESSURE" ) ;
2761  mswCols.pressure().putColumn( sharedFloatCol ) ;
2762  sharedFloatCol.attach( stw, "HUMIDITY" ) ;
2763  mswCols.relHumidity().putColumn( sharedFloatCol ) ;
2764  sharedFloatCol.attach( stw, "WINDSPEED" ) ;
2765  mswCols.windSpeed().putColumn( sharedFloatCol ) ;
2766  sharedFloatCol.attach( stw, "WINDAZ" ) ;
2767  mswCols.windDirection().putColumn( sharedFloatCol ) ;
2768
2769  // fill TIME and INTERVAL
2770  Double midTime ;
2771  Double interval ;
2772  Vector<Double> intervalArr( nrow, 0.0 ) ;
2773  TableIterator iter( table_->table(), "WEATHER_ID" ) ;
2774  while( !iter.pastEnd() ) {
2775    //Table tab( iter.table() ) ;
2776    Table tab = iter.table() ;
2777
2778    ROScalarColumn<uInt> widCol( tab, "WEATHER_ID" ) ;
2779    uInt wid = widCol( 0 ) ;
2780
2781    getValidTimeRange( midTime, interval, tab ) ;
2782    mswCols.time().put( wid, midTime ) ;
2783    intervalArr[wid] = interval ;
2784
2785    iter.next() ;
2786  }
2787  mswCols.interval().putColumn( intervalArr ) ;
2788
2789//   double endSec = mathutil::gettimeofday_sec() ;
2790//   os_ << "end MSWriter::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2791}
2792
2793void MSWriter::fillSysCal()
2794{
2795  Table mssc = mstable_->sysCal() ;
2796
2797  if (table_->tcal().table().nrow() > 0) {
2798    static const char *cols[] = {
2799      "BEAMNO", "IFNO", "TIME", "POLNO",
2800      NULL
2801    };
2802    static const TypeManagerImpl<uInt> tmUInt;
2803    static const TypeManagerImpl<Double> tmDouble;
2804    static const TypeManager *const tms[] = {
2805      &tmUInt, &tmUInt, &tmDouble, &tmUInt, NULL
2806    };
2807    //double t0 = mathutil::gettimeofday_sec() ;
2808    MSSysCalVisitor myVisitor(table_->table(),mssc);
2809    //double t1 = mathutil::gettimeofday_sec() ;
2810    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2811    traverseTable(table_->table(), cols, tms, &myVisitor);
2812    //double t3 = mathutil::gettimeofday_sec() ;
2813    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2814  }
2815 
2816}
2817
2818void MSWriter::getValidTimeRange( Double &me, Double &interval, Table &tab )
2819{
2820//   double startSec = mathutil::gettimeofday_sec() ;
2821//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2822
2823  // sort table
2824  //Table stab = tab.sort( "TIME" ) ;
2825
2826  ROScalarColumn<Double> timeCol( tab, "TIME" ) ;
2827  Vector<Double> timeArr = timeCol.getColumn() ;
2828  Double minTime ;
2829  Double maxTime ;
2830  minMax( minTime, maxTime, timeArr ) ;
2831  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2832  // unit for TIME
2833  // Scantable: "d"
2834  // MS: "s"
2835  me = midTime ;
2836  interval = ( maxTime - minTime ) * 86400.0 ;
2837
2838//   double endSec = mathutil::gettimeofday_sec() ;
2839//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2840}
2841
2842void MSWriter::getValidTimeRange( Double &me, Double &interval, Vector<Double> &atime, Vector<Double> &ainterval )
2843{
2844//   double startSec = mathutil::gettimeofday_sec() ;
2845//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2846
2847  // sort table
2848  //Table stab = tab.sort( "TIME" ) ;
2849
2850  Double minTime ;
2851  Double maxTime ;
2852  minMax( minTime, maxTime, atime ) ;
2853  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2854  // unit for TIME
2855  // Scantable: "d"
2856  // MS: "s"
2857  me = midTime ;
2858  interval = ( maxTime - minTime ) * 86400.0 + mean( ainterval ) ;
2859
2860//   double endSec = mathutil::gettimeofday_sec() ;
2861//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2862}
2863
2864}
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