source: trunk/src/MSWriter.cpp @ 2746

Last change on this file since 2746 was 2746, checked in by Takeshi Nakazato, 11 years ago

New Development: No

JIRA Issue: No

Ready for Test: Yes

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: List test programs

Put in Release Notes: Yes/No?

Module(s): Module Names change impacts.

Description: Describe your changes here...

Fixed a known bug that SYSCAL table is not properly handled when
import/export.


File size: 77.8 KB
Line 
1//
2// C++ Interface: MSWriter
3//
4// Description:
5//
6// This class is specific writer for MS format
7//
8// Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2010
9//
10// Copyright: See COPYING file that comes with this distribution
11//
12//
13#include <assert.h>
14
15#include <set>
16
17#include <casa/OS/File.h>
18#include <casa/OS/RegularFile.h>
19#include <casa/OS/Directory.h>
20#include <casa/OS/SymLink.h>
21#include <casa/BasicSL/String.h>
22#include <casa/Arrays/Cube.h>
23#include <casa/Containers/RecordField.h>
24
25#include <tables/Tables/ExprNode.h>
26#include <tables/Tables/TableDesc.h>
27#include <tables/Tables/SetupNewTab.h>
28#include <tables/Tables/TableIter.h>
29#include <tables/Tables/RefRows.h>
30#include <tables/Tables/TableRow.h>
31
32#include <ms/MeasurementSets/MeasurementSet.h>
33#include <ms/MeasurementSets/MSColumns.h>
34#include <ms/MeasurementSets/MSPolIndex.h>
35#include <ms/MeasurementSets/MSDataDescIndex.h>
36#include <ms/MeasurementSets/MSSourceIndex.h>
37
38#include "MSWriter.h"
39#include "STHeader.h"
40#include "STFrequencies.h"
41#include "STMolecules.h"
42#include "STTcal.h"
43#include "MathUtils.h"
44#include "TableTraverse.h"
45
46using namespace casa ;
47using namespace std ;
48
49namespace asap {
50
51class CorrTypeHandler {
52public:
53  CorrTypeHandler()
54  {}
55  virtual ~CorrTypeHandler() {}
56  virtual Vector<Stokes::StokesTypes> corrType() = 0 ;
57  virtual void reset()
58  {
59    npol = 0 ;
60  }
61  void append( uInt polno )
62  {
63    polnos[npol] = polno ;
64    npol++ ;
65  }
66  uInt nPol() { return npol ; }
67protected:
68  Vector<Stokes::StokesTypes> polmap ;
69  uInt polnos[4] ;
70  uInt npol ;
71};
72
73class LinearHandler : public CorrTypeHandler {
74public:
75  LinearHandler()
76    : CorrTypeHandler()
77  {
78    initMap() ;
79  }
80  virtual ~LinearHandler() {}
81  virtual Vector<Stokes::StokesTypes> corrType()
82  {
83    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
84    if ( npol < 4 ) {
85      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
86        ret[ipol] = polmap[polnos[ipol]] ;
87    }
88    else if ( npol == 4 ) {
89      ret[0] = polmap[0] ;
90      ret[1] = polmap[2] ;
91      ret[2] = polmap[3] ;
92      ret[3] = polmap[1] ;
93    }
94    else {
95      throw( AipsError("npol > 4") ) ;
96    }
97    return ret ;
98  }
99protected:
100  void initMap()
101  {
102    polmap.resize( 4 ) ;
103    polmap[0] = Stokes::XX ;
104    polmap[1] = Stokes::YY ;
105    polmap[2] = Stokes::XY ;
106    polmap[3] = Stokes::YX ;
107  }
108};
109class CircularHandler : public CorrTypeHandler {
110public:
111  CircularHandler()
112    : CorrTypeHandler()
113  {
114    initMap() ;
115  }
116  virtual ~CircularHandler() {}
117  virtual Vector<Stokes::StokesTypes> corrType()
118  {
119    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
120    if ( npol < 4 ) {
121      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
122        ret[ipol] = polmap[polnos[ipol]] ;
123    }
124    else if ( npol == 4 ) {
125      ret[0] = polmap[0] ;
126      ret[1] = polmap[2] ;
127      ret[2] = polmap[3] ;
128      ret[3] = polmap[1] ;
129    }
130    else {
131      throw( AipsError("npol > 4") ) ;
132    }
133    return ret ;
134  }
135private:
136  void initMap()
137  {
138    polmap.resize( 4 ) ;
139    polmap[0] = Stokes::RR ;
140    polmap[1] = Stokes::LL ;
141    polmap[2] = Stokes::RL ;
142    polmap[3] = Stokes::LR ;
143  }
144};
145class StokesHandler : public CorrTypeHandler {
146public:
147  StokesHandler()
148    : CorrTypeHandler()
149  {
150    initMap() ;
151  }
152  virtual ~StokesHandler() {}
153  virtual Vector<Stokes::StokesTypes> corrType()
154  {
155    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
156    if ( npol <= 4 ) {
157      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
158        ret[ipol] = polmap[polnos[ipol]] ;
159    }
160    else {
161      throw( AipsError("npol > 4") ) ;
162    }
163    return ret ;
164  }
165private:
166  void initMap()
167  {
168    polmap.resize( 4 ) ;
169    polmap[0] = Stokes::I ;
170    polmap[1] = Stokes::Q ;
171    polmap[2] = Stokes::U ;
172    polmap[3] = Stokes::V ;
173  }
174};
175class LinPolHandler : public CorrTypeHandler {
176public:
177  LinPolHandler()
178    : CorrTypeHandler()
179  {
180    initMap() ;
181  }
182  virtual ~LinPolHandler() {}
183  virtual Vector<Stokes::StokesTypes> corrType()
184  {
185    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
186    if ( npol <= 2 ) {
187      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
188        ret[ipol] = polmap[polnos[ipol]] ;
189    }
190    else {
191      throw( AipsError("npol > 4") ) ;
192    }
193    return ret ;
194  }
195private:
196  void initMap()
197  {
198    polmap.resize( 2 ) ;
199    polmap[0] = Stokes::Plinear ;
200    polmap[1] = Stokes::Pangle ;
201  }
202};
203
204class DataHolder {
205public:
206  DataHolder( TableRow &tableRow, String polType )
207    : row( tableRow )
208  {
209    nchan = 0 ;
210    npol = 0 ;
211    makeCorrTypeHandler( polType ) ;
212    attach() ;
213    flagRow.resize( 4 ) ;
214    reset() ;
215    sigmaTemplate.resize( 4 ) ;
216    sigmaTemplate = 1.0 ;
217  }
218  virtual ~DataHolder() {}
219  void post()
220  {
221    postData() ;
222    postFlag() ;
223    postFlagRow() ;
224    postAuxiliary() ;
225  }
226  virtual void reset()
227  {
228    corr->reset() ;
229    flagRow = False ;
230    npol = 0 ;
231    for ( uInt i = 0 ; i < 4 ; i++ )
232      isFilled[i] = False ;   
233  }
234  virtual void accumulate( uInt id, Vector<Float> &sp, Vector<Bool> &fl, Bool &flr )
235  {
236    accumulateCorrType( id ) ;
237    accumulateData( id, sp ) ;
238    accumulateFlag( id, fl ) ;
239    accumulateFlagRow( id, flr ) ;
240    isFilled[id] = True;
241  }
242  uInt nPol() { return npol ; }
243  uInt nChan() { return nchan ; }
244  Vector<Int> corrTypeInt()
245  {
246    Vector<Int> v( npol ) ;
247    convertArray( v, corr->corrType() ) ;
248    return v ;
249  }
250  Vector<Stokes::StokesTypes> corrType() { return corr->corrType() ; }
251  void setNchan( uInt num )
252  {
253    nchan = num ;
254    resize() ;
255  }
256protected:
257  void postAuxiliary()
258  {
259    Vector<Float> w = sigmaTemplate( IPosition(1,0), IPosition(1,npol-1) ) ;
260    sigmaRF.define( w ) ;
261    weightRF.define( w ) ;
262    Cube<Bool> c( npol, nchan, 1, False ) ;
263    flagCategoryRF.define( c ) ;
264  }
265  inline void accumulateCorrType( uInt &id )
266  {
267    corr->append( id ) ;
268    npol = corr->nPol() ;
269  }
270  inline void accumulateFlagRow( uInt &id, Bool &flr )
271  {
272    flagRow[id] = flr ;
273  }
274  void postFlagRow()
275  {
276    *flagRowRF = anyEQ( flagRow, True ) ;
277  }
278  inline void accumulateFlag( uInt &id, Vector<Bool> &fl )
279  {
280    flag.row( id ) = fl ;
281  }
282  virtual void postFlag() = 0 ;
283  inline void accumulateData( uInt &id, Vector<Float> &sp )
284  {
285    data.row( id ) = sp ;
286  }
287  uInt filledIndex()
288  {
289    uInt idx = 0;
290    while( !isFilled[idx] && idx < 4 ) ++idx;
291    return idx;
292  }
293  virtual void postData() = 0 ;
294  TableRow &row ;
295  uInt nchan ;
296  uInt npol ;
297  CountedPtr<CorrTypeHandler> corr;
298  RecordFieldPtr< Vector<Float> > sigmaRF ;
299  RecordFieldPtr< Vector<Float> > weightRF ;
300  RecordFieldPtr< Array<Bool> > flagRF ;
301  RecordFieldPtr<Bool> flagRowRF ;
302  RecordFieldPtr< Cube<Bool> > flagCategoryRF ;
303  Vector<Bool> flagRow ;
304  Matrix<Bool> flag ;
305  Matrix<Float> data ;
306  Vector<Float> sigmaTemplate ;
307  Bool isFilled[4] ;
308private:
309  void makeCorrTypeHandler( String &polType )
310  {
311    if ( polType == "linear" )
312      corr = new LinearHandler() ;
313    else if ( polType == "circular" )
314      corr = new CircularHandler() ;
315    else if ( polType == "stokes" )
316      corr = new StokesHandler() ;
317    else if ( polType == "linpol" )
318      corr = new LinPolHandler() ;
319    else
320      throw( AipsError("Invalid polarization type") ) ;
321  }
322  void attach()
323  {
324    TableRecord &rec = row.record() ;
325    sigmaRF.attachToRecord( rec, "SIGMA" ) ;
326    weightRF.attachToRecord( rec, "WEIGHT" ) ;
327    flagRF.attachToRecord( rec, "FLAG" ) ;
328    flagRowRF.attachToRecord( rec, "FLAG_ROW" ) ;
329    flagCategoryRF.attachToRecord( rec, "FLAG_CATEGORY" ) ;
330  }
331  void resize()
332  {
333    flag.resize( 4, nchan ) ;
334    data.resize( 4, nchan ) ;
335  }
336};
337
338class FloatDataHolder : public DataHolder {
339public:
340  FloatDataHolder( TableRow &tableRow, String polType )
341    : DataHolder( tableRow, polType )
342  {
343    attachData() ;
344  }
345  virtual ~FloatDataHolder() {}
346protected:
347  virtual void postFlag()
348  {
349    if ( npol == 2 ) {
350      flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
351    }
352    else {
353      // should be npol == 1
354      uInt idx = filledIndex() ;
355      flagRF.define( flag( IPosition( 2, idx, 0 ), IPosition( 2, idx, nchan-1 ) ) ) ;
356    }
357  }
358  virtual void postData()
359  {
360    if ( npol == 2 ) {
361      dataRF.define( data( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
362    }
363    else {
364      // should be npol == 1
365      uInt idx = filledIndex() ;
366      dataRF.define( data( IPosition( 2, idx, 0 ), IPosition( 2, idx, nchan-1 ) ) ) ;
367    }
368  }
369private:
370  void attachData()
371  {
372    dataRF.attachToRecord( row.record(), "FLOAT_DATA" ) ;
373  }
374  RecordFieldPtr< Matrix<Float> > dataRF;
375};
376
377class ComplexDataHolder : public DataHolder {
378public:
379  ComplexDataHolder( TableRow &tableRow, String polType )
380    : DataHolder( tableRow, polType )
381  {
382    attachData() ;
383  }
384  virtual ~ComplexDataHolder() {}
385protected:
386  virtual void postFlag()
387  {
388    if ( npol == 4 ) {
389      Vector<Bool> tmp = flag.row( 3 ) ;
390      flag.row( 3 ) = flag.row( 1 ) ;
391      flag.row( 2 ) = flag.row( 2 ) || tmp ;
392      flag.row( 1 ) = flag.row( 2 ) ;
393      flagRF.define( flag ) ;
394    }
395    else if ( npol == 2 ) {
396      flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
397    }
398    else {
399      // should be npol == 1
400      uInt idx = filledIndex() ;
401      flagRF.define( flag( IPosition( 2, idx, 0 ), IPosition( 2, idx, nchan-1 ) ) ) ;
402    }
403  }
404  virtual void postData()
405  {
406    Matrix<Float> tmp( 2, nchan, 0.0 ) ;
407    Matrix<Complex> v( npol, nchan ) ;
408    if ( isFilled[0] ) {
409      tmp.row( 0 ) = data.row( 0 ) ;
410      v.row( 0 ) = RealToComplex( tmp ) ;
411    }
412    if ( isFilled[1] ) {
413      tmp.row( 0 ) = data.row( 1 ) ;
414      v.row( npol-1 ) = RealToComplex( tmp ) ;
415    }
416    if ( isFilled[2] && isFilled[3] ) {
417      tmp.row( 0 ) = data.row( 2 ) ;
418      tmp.row( 1 ) = data.row( 3 ) ;
419      v.row( 1 ) = RealToComplex( tmp ) ;
420      v.row( 2 ) = conj( v.row( 1 ) ) ;
421    }
422    dataRF.define( v ) ;
423  }
424private:
425  void attachData()
426  {
427    dataRF.attachToRecord( row.record(), "DATA" ) ;
428  }
429  RecordFieldPtr< Matrix<Complex> > dataRF;
430};
431
432class BaseMSWriterVisitor: public TableVisitor {
433  const String *lastFieldName;
434  uInt lastRecordNo;
435  uInt lastBeamNo, lastScanNo, lastIfNo, lastPolNo;
436  Int lastSrcType;
437  uInt lastCycleNo;
438  Double lastTime;
439protected:
440  const Table &table;
441  uInt count;
442public:
443  BaseMSWriterVisitor(const Table &table)
444    : table(table)
445  {
446    static const String dummy;
447    lastFieldName = &dummy;
448    count = 0;
449  }
450 
451  virtual void enterFieldName(const uInt /*recordNo*/, const String &/*columnValue*/) {
452  }
453  virtual void leaveFieldName(const uInt /*recordNo*/, const String &/*columnValue*/) {
454  }
455  virtual void enterBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
456  virtual void leaveBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
457  virtual void enterScanNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
458  virtual void leaveScanNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
459  virtual void enterIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
460  virtual void leaveIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
461  virtual void enterSrcType(const uInt /*recordNo*/, Int /*columnValue*/) { }
462  virtual void leaveSrcType(const uInt /*recordNo*/, Int /*columnValue*/) { }
463  virtual void enterCycleNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
464  virtual void leaveCycleNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
465  virtual void enterTime(const uInt /*recordNo*/, Double /*columnValue*/) { }
466  virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) { }
467  virtual void enterPolNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
468  virtual void leavePolNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
469
470  virtual Bool visitRecord(const uInt /*recordNo*/,
471                           const String &/*fieldName*/,
472                           const uInt /*beamNo*/,
473                           const uInt /*scanNo*/,
474                           const uInt /*ifNo*/,
475                           const Int /*srcType*/,
476                           const uInt /*cycleNo*/,
477                           const Double /*time*/,
478                           const uInt /*polNo*/) { return True ;}
479
480  virtual Bool visit(Bool isFirst, const uInt recordNo,
481                     const uInt nCols, void const *const colValues[]) {
482    const String *fieldName = NULL;
483    uInt beamNo, scanNo, ifNo;
484    Int srcType;
485    uInt cycleNo;
486    Double time;
487    uInt polNo;
488    { // prologue
489      uInt i = 0;
490      {
491        const String *col = (const String*)colValues[i++];
492        fieldName = &col[recordNo];
493      }
494      {
495        const uInt *col = (const uInt *)colValues[i++];
496        beamNo = col[recordNo];
497      }
498      {
499        const uInt *col = (const uInt *)colValues[i++];
500        scanNo = col[recordNo];
501      }
502      {
503        const uInt *col = (const uInt *)colValues[i++];
504        ifNo = col[recordNo];
505      }
506      {
507        const Int *col = (const Int *)colValues[i++];
508        srcType = col[recordNo];
509      }
510      {
511        const uInt *col = (const uInt *)colValues[i++];
512        cycleNo = col[recordNo];
513      }
514      {
515        const Double *col = (const Double *)colValues[i++];
516        time = col[recordNo];
517      }
518      {
519        const Int *col = (const Int *)colValues[i++];
520        polNo = col[recordNo];
521      }
522      assert(nCols == i);
523    }
524
525    if (isFirst) {
526      enterFieldName(recordNo, *fieldName);
527      enterBeamNo(recordNo, beamNo);
528      enterScanNo(recordNo, scanNo);
529      enterIfNo(recordNo, ifNo);
530      enterSrcType(recordNo, srcType);
531      enterCycleNo(recordNo, cycleNo);
532      enterTime(recordNo, time);
533      enterPolNo(recordNo, polNo);
534    } else {
535      if (lastFieldName->compare(*fieldName) != 0) {
536        leavePolNo(lastRecordNo, lastPolNo);
537        leaveTime(lastRecordNo, lastTime);
538        leaveCycleNo(lastRecordNo, lastCycleNo);
539        leaveSrcType(lastRecordNo, lastSrcType);
540        leaveIfNo(lastRecordNo, lastIfNo);
541        leaveScanNo(lastRecordNo, lastScanNo);
542        leaveBeamNo(lastRecordNo, lastBeamNo);
543        leaveFieldName(lastRecordNo, *lastFieldName);
544
545        enterFieldName(recordNo, *fieldName);
546        enterBeamNo(recordNo, beamNo);
547        enterScanNo(recordNo, scanNo);
548        enterIfNo(recordNo, ifNo);
549        enterSrcType(recordNo, srcType);
550        enterCycleNo(recordNo, cycleNo);
551        enterTime(recordNo, time);
552        enterPolNo(recordNo, polNo);
553      } else if (lastBeamNo != beamNo) {
554        leavePolNo(lastRecordNo, lastPolNo);
555        leaveTime(lastRecordNo, lastTime);
556        leaveCycleNo(lastRecordNo, lastCycleNo);
557        leaveSrcType(lastRecordNo, lastSrcType);
558        leaveIfNo(lastRecordNo, lastIfNo);
559        leaveScanNo(lastRecordNo, lastScanNo);
560        leaveBeamNo(lastRecordNo, lastBeamNo);
561
562        enterBeamNo(recordNo, beamNo);
563        enterScanNo(recordNo, scanNo);
564        enterIfNo(recordNo, ifNo);
565        enterSrcType(recordNo, srcType);
566        enterCycleNo(recordNo, cycleNo);
567        enterTime(recordNo, time);
568        enterPolNo(recordNo, polNo);
569      } else if (lastScanNo != scanNo) {
570        leavePolNo(lastRecordNo, lastPolNo);
571        leaveTime(lastRecordNo, lastTime);
572        leaveCycleNo(lastRecordNo, lastCycleNo);
573        leaveSrcType(lastRecordNo, lastSrcType);
574        leaveIfNo(lastRecordNo, lastIfNo);
575        leaveScanNo(lastRecordNo, lastScanNo);
576
577        enterScanNo(recordNo, scanNo);
578        enterIfNo(recordNo, ifNo);
579        enterSrcType(recordNo, srcType);
580        enterCycleNo(recordNo, cycleNo);
581        enterTime(recordNo, time);
582        enterPolNo(recordNo, polNo);
583      } else if (lastIfNo != ifNo) {
584        leavePolNo(lastRecordNo, lastPolNo);
585        leaveTime(lastRecordNo, lastTime);
586        leaveCycleNo(lastRecordNo, lastCycleNo);
587        leaveSrcType(lastRecordNo, lastSrcType);
588        leaveIfNo(lastRecordNo, lastIfNo);
589
590        enterIfNo(recordNo, ifNo);
591        enterSrcType(recordNo, srcType);
592        enterCycleNo(recordNo, cycleNo);
593        enterTime(recordNo, time);
594        enterPolNo(recordNo, polNo);
595      } else if (lastSrcType != srcType) {
596        leavePolNo(lastRecordNo, lastPolNo);
597        leaveTime(lastRecordNo, lastTime);
598        leaveCycleNo(lastRecordNo, lastCycleNo);
599        leaveSrcType(lastRecordNo, lastSrcType);
600
601        enterSrcType(recordNo, srcType);
602        enterCycleNo(recordNo, cycleNo);
603        enterTime(recordNo, time);
604        enterPolNo(recordNo, polNo);
605      } else if (lastCycleNo != cycleNo) {
606        leavePolNo(lastRecordNo, lastPolNo);
607        leaveTime(lastRecordNo, lastTime);
608        leaveCycleNo(lastRecordNo, lastCycleNo);
609
610        enterCycleNo(recordNo, cycleNo);
611        enterTime(recordNo, time);
612        enterPolNo(recordNo, polNo);
613      } else if (lastTime != time) {
614        leavePolNo(lastRecordNo, lastPolNo);
615        leaveTime(lastRecordNo, lastTime);
616
617        enterTime(recordNo, time);
618        enterPolNo(recordNo, polNo);
619      } else if (lastPolNo != polNo) {
620        leavePolNo(lastRecordNo, lastPolNo);
621        enterPolNo(recordNo, polNo);
622      }
623    }
624    count++;
625    Bool result = visitRecord(recordNo, *fieldName, beamNo, scanNo, ifNo, srcType,
626                              cycleNo, time, polNo);
627
628    { // epilogue
629      lastRecordNo = recordNo;
630
631      lastFieldName = fieldName;
632      lastBeamNo = beamNo;
633      lastScanNo = scanNo;
634      lastIfNo = ifNo;
635      lastSrcType = srcType;
636      lastCycleNo = cycleNo;
637      lastTime = time;
638      lastPolNo = polNo;
639    }
640    return result ;
641  }
642
643  virtual void finish() {
644    if (count > 0) {
645      leavePolNo(lastRecordNo, lastPolNo);
646      leaveTime(lastRecordNo, lastTime);
647      leaveCycleNo(lastRecordNo, lastCycleNo);
648      leaveSrcType(lastRecordNo, lastSrcType);
649      leaveIfNo(lastRecordNo, lastIfNo);
650      leaveScanNo(lastRecordNo, lastScanNo);
651      leaveBeamNo(lastRecordNo, lastBeamNo);
652      leaveFieldName(lastRecordNo, *lastFieldName);
653    }
654  }
655};
656
657class MSWriterVisitor: public BaseMSWriterVisitor, public MSWriterUtils {
658public:
659  MSWriterVisitor(const Table &table, Table &mstable)
660    : BaseMSWriterVisitor(table),
661      ms(mstable)
662  {
663    rowidx = 0 ;
664    fieldName = "" ;
665    defaultFieldId = 0 ;
666    spwId = -1 ;
667    subscan = 1 ;
668    ptName = "" ;
669    srcId = 0 ;
670   
671    row = TableRow( ms ) ;
672
673    initPolarization() ;
674    initFrequencies() ;
675
676    //
677    // add rows to MS
678    //
679    uInt addrow = table.nrow() ;
680    ms.addRow( addrow ) ;
681
682    // attach to Scantable columns
683    spectraCol.attach( table, "SPECTRA" ) ;
684    flagtraCol.attach( table, "FLAGTRA" ) ;
685    flagRowCol.attach( table, "FLAGROW" ) ;
686    tcalIdCol.attach( table, "TCAL_ID" ) ;
687    intervalCol.attach( table, "INTERVAL" ) ;
688    directionCol.attach( table, "DIRECTION" ) ;
689    scanRateCol.attach( table, "SCANRATE" ) ;
690    timeCol.attach( table, "TIME" ) ;
691    freqIdCol.attach( table, "FREQ_ID" ) ;
692    sourceNameCol.attach( table, "SRCNAME" ) ;
693    sourceDirectionCol.attach( table, "SRCDIRECTION" ) ;
694    fieldNameCol.attach( table, "FIELDNAME" ) ;
695
696    // MS subtables
697    attachSubtables() ;
698
699    // attach to MS columns
700    attachMain() ;
701    attachPointing() ;
702  }
703 
704  virtual void enterFieldName(const uInt recordNo, const String &/*columnValue*/) {
705    //printf("%u: FieldName: %s\n", recordNo, columnValue.c_str());
706    fieldName = fieldNameCol.asString( recordNo ) ;
707    String::size_type pos = fieldName.find( "__" ) ;
708    if ( pos != String::npos ) {
709      fieldId = String::toInt( fieldName.substr( pos+2 ) ) ;
710      fieldName = fieldName.substr( 0, pos ) ;
711    }
712    else {
713      fieldId = defaultFieldId ;
714      defaultFieldId++ ;
715    }
716    Double tSec = timeCol.asdouble( recordNo ) * 86400.0 ;
717    Vector<Double> srcDir = sourceDirectionCol( recordNo ) ;
718    Vector<Double> srate = scanRateCol( recordNo ) ;
719    String srcName = sourceNameCol.asString( recordNo ) ;
720
721    addField( fieldId, fieldName, srcName, srcDir, srate, tSec ) ;
722
723    // put value
724    *fieldIdRF = fieldId ;
725  }
726  virtual void leaveFieldName(const uInt /*recordNo*/, const String &/*columnValue*/) {
727  }
728  virtual void enterBeamNo(const uInt /*recordNo*/, uInt columnValue) {
729    //printf("%u: BeamNo: %u\n", recordNo, columnValue);
730   
731    feedId = (Int)columnValue ;
732
733    // put value
734    *feed1RF = feedId ;
735    *feed2RF = feedId ;
736  }
737  virtual void leaveBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
738  }
739  virtual void enterScanNo(const uInt /*recordNo*/, uInt columnValue) {
740    //printf("%u: ScanNo: %u\n", recordNo, columnValue);
741
742    // put value
743    // SCAN_NUMBER is 0-based in Scantable while 1-based in MS
744    *scanNumberRF = (Int)columnValue + 1 ;
745  }
746  virtual void leaveScanNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
747    subscan = 1 ;
748  }
749  virtual void enterIfNo(const uInt recordNo, uInt columnValue) {
750    //printf("%u: IfNo: %u\n", recordNo, columnValue);
751
752    spwId = (Int)columnValue ;
753    uInt freqId = freqIdCol.asuInt( recordNo ) ;
754
755    Vector<Float> sp = spectraCol( recordNo ) ;
756    uInt nchan = sp.nelements() ;
757    holder->setNchan( nchan ) ;
758
759    addSpectralWindow( spwId, freqId ) ;
760
761    addFeed( feedId, spwId ) ;
762  }
763  virtual void leaveIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
764  }
765  virtual void enterSrcType(const uInt /*recordNo*/, Int columnValue) {
766    //printf("%u: SrcType: %d\n", recordNo, columnValue);
767
768    Int stateId = addState( columnValue ) ;
769
770    // put value
771    *stateIdRF = stateId ;
772  }
773  virtual void leaveSrcType(const uInt /*recordNo*/, Int /*columnValue*/) {
774  }
775  virtual void enterCycleNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
776    //printf("%u: CycleNo: %u\n", recordNo, columnValue);
777  }
778  virtual void leaveCycleNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
779  }
780  virtual void enterTime(const uInt recordNo, Double columnValue) {
781    //printf("%u: Time: %f\n", recordNo, columnValue);
782
783    Double timeSec = columnValue * 86400.0 ;
784    Double interval = intervalCol.asdouble( recordNo ) ;
785
786    if ( ptName.empty() ) {
787      Vector<Double> dir = directionCol( recordNo ) ;
788      Vector<Double> rate = scanRateCol( recordNo ) ;
789      if ( anyNE( rate, 0.0 ) ) {
790        Matrix<Double> msdir( 2, 2 ) ;
791        msdir.column( 0 ) = dir ;
792        msdir.column( 1 ) = rate ;
793        addPointing( timeSec, interval, msdir ) ;
794      }
795      else {
796        Matrix<Double> msdir( 2, 1 ) ;
797        msdir.column( 0 ) = dir ;
798        addPointing( timeSec, interval, msdir ) ;
799      }
800    }
801
802    // put value
803    *timeRF = timeSec ;
804    *timeCentroidRF = timeSec ;
805    *intervalRF = interval ;
806    *exposureRF = interval ;
807  }
808  virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) {
809    if ( holder->nPol() > 0 ) {
810      Int polId = addPolarization() ;
811      Int ddId = addDataDescription( polId, spwId ) ;
812       
813      // put field
814      *dataDescIdRF = ddId ;
815      holder->post() ;
816     
817      // commit row
818      row.put( rowidx ) ;
819      rowidx++ ;
820
821      // reset holder
822      holder->reset() ;
823    }
824  }
825  virtual void enterPolNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
826    //printf("%u: PolNo: %d\n", recordNo, columnValue);
827  }
828  virtual void leavePolNo(const uInt /*recordNo*/, uInt /*columnValue*/) {
829  }
830
831  virtual Bool visitRecord(const uInt recordNo,
832                           const String &/*fieldName*/,
833                           const uInt /*beamNo*/,
834                           const uInt /*scanNo*/,
835                           const uInt /*ifNo*/,
836                           const Int /*srcType*/,
837                           const uInt /*cycleNo*/,
838                           const Double /*time*/,
839                           const uInt polNo) {
840    //printf("%u: %s, %u, %u, %u, %d, %u, %f, %d\n", recordNo,
841    //       fieldName.c_str(), beamNo, scanNo, ifNo, srcType, cycleNo, time, polNo);
842
843    Vector<Float> sp = spectraCol( recordNo ) ;
844    Vector<uChar> tmp = flagtraCol( recordNo ) ;
845    Vector<Bool> fl( tmp.shape() ) ;
846    convertArray( fl, tmp ) ;
847    Bool flr = (Bool)flagRowCol.asuInt( recordNo ) ;
848    holder->accumulate( polNo, sp, fl, flr ) ;
849
850    return True ;
851  }
852
853  virtual void finish() {
854    BaseMSWriterVisitor::finish();
855    //printf("Total: %u\n", count);
856
857    // remove rows
858    if ( ms.nrow() > rowidx ) {
859      uInt numRemove = ms.nrow() - rowidx ;
860      //cout << "numRemove = " << numRemove << endl ;
861      Vector<uInt> rows( numRemove ) ;
862      indgen( rows, rowidx ) ;
863      ms.removeRow( rows ) ;
864    }
865
866    // fill empty SPECTRAL_WINDOW rows
867    infillSpectralWindow() ;
868  }
869
870  void dataColumnName( String name )
871  {
872    if ( name == "DATA" )
873      holder = new ComplexDataHolder( row, poltype ) ;
874    else if ( name == "FLOAT_DATA" )
875      holder = new FloatDataHolder( row, poltype ) ;
876  }
877  void pointingTableName( String name ) {
878    ptName = name ;
879  }
880  void setSourceRecord( Record &r ) {
881    srcRec = r ;
882  }
883private:
884  void addField( Int &fid, String &fname, String &srcName,
885                 Vector<Double> &sdir, Vector<Double> &srate,
886                 Double &tSec )
887  {
888    uInt nrow = fieldtab.nrow() ;
889    while( (Int)nrow <= fid ) {
890      fieldtab.addRow( 1, True ) ;
891      nrow++ ;
892    }
893
894    Matrix<Double> dir ;
895    Int numPoly = 0 ;
896    if ( anyNE( srate, 0.0 ) ) {
897      dir.resize( 2, 2 ) ;
898      dir.column( 0 ) = sdir ;
899      dir.column( 1 ) = srate ;
900      numPoly = 1 ;
901    }
902    else {
903      dir.resize( 2, 1 ) ;
904      dir.column( 0 ) = sdir ;
905    }
906    srcId = srcRec.asInt( srcName ) ;
907
908    TableRow tr( fieldtab ) ;
909    TableRecord &r = tr.record() ;
910    putField( "NAME", r, fname ) ;
911    putField( "NUM_POLY", r, numPoly ) ;
912    putField( "TIME", r, tSec ) ;
913    putField( "SOURCE_ID", r, srcId ) ;
914    defineField( "DELAY_DIR", r, dir ) ;
915    defineField( "REFERENCE_DIR", r, dir ) ;
916    defineField( "PHASE_DIR", r, dir ) ;
917    tr.put( fid ) ;
918
919    // for POINTING table
920    *poNameRF = fname ;
921  }
922  Int addState( Int &id )
923  {
924    String obsMode ;
925    Bool isSignal ;
926    Double tnoise ;
927    Double tload ;
928    queryType( id, obsMode, isSignal, tnoise, tload ) ;
929
930    String key = obsMode+"_"+String::toString( subscan ) ;
931    Int idx = -1 ;
932    uInt nEntry = stateEntry.nelements() ;
933    for ( uInt i = 0 ; i < nEntry ; i++ ) {
934      if ( stateEntry[i] == key ) {
935        idx = i ;
936        break ;
937      }
938    }
939    if ( idx == -1 ) {
940      uInt nrow = statetab.nrow() ;
941      statetab.addRow( 1, True ) ;
942      TableRow tr( statetab ) ;
943      TableRecord &r = tr.record() ;
944      putField( "OBS_MODE", r, obsMode ) ;
945      putField( "SIG", r, isSignal ) ;
946      isSignal = !isSignal ;
947      putField( "REF", r, isSignal ) ;
948      putField( "CAL", r, tnoise ) ;
949      putField( "LOAD", r, tload ) ;
950      tr.put( nrow ) ;
951      idx = nrow ;
952
953      stateEntry.resize( nEntry+1, True ) ;
954      stateEntry[nEntry] = key ;
955    }
956    subscan++ ;
957
958    return idx ;
959  }
960  void addPointing( Double &tSec, Double &interval, Matrix<Double> &dir )
961  {
962    uInt nrow = potab.nrow() ;
963    potab.addRow() ;
964
965    *poNumPolyRF = dir.ncolumn() - 1 ;
966    *poTimeRF = tSec ;
967    *poTimeOriginRF = tSec ;
968    *poIntervalRF = interval ;
969    poDirectionRF.define( dir ) ;
970    poTargetRF.define( dir ) ;
971    porow.put( nrow ) ;
972  }
973  Int addPolarization()
974  {
975    Int idx = -1 ;
976    Vector<Int> corrType = holder->corrTypeInt() ;
977    uInt nEntry = polEntry.size() ;
978    for ( uInt i = 0 ; i < nEntry ; i++ ) {
979      if ( polEntry[i].conform( corrType ) && allEQ( polEntry[i], corrType ) ) {
980        idx = i ;
981        break ;
982      }
983    }
984   
985    Int numCorr = holder->nPol() ;
986    Matrix<Int> corrProduct = corrProductTemplate[numCorr].copy() ;
987    if ( numCorr == 1 && (corrType[0] == Stokes::YY || corrType[0] == Stokes::LL ) ) {
988      corrProduct = 1;
989    }
990
991    if ( idx == -1 ) {
992      uInt nrow = poltab.nrow() ;
993      poltab.addRow( 1, True ) ;
994      TableRow tr( poltab ) ;
995      TableRecord &r = tr.record() ;
996      putField( "NUM_CORR", r, numCorr ) ;
997      defineField( "CORR_TYPE", r, corrType ) ;
998      defineField( "CORR_PRODUCT", r, corrProduct ) ;
999      tr.put( nrow ) ;
1000      idx = nrow ;
1001
1002      polEntry.resize( nEntry+1 ) ;
1003      polEntry[nEntry] = corrType ;
1004    }
1005
1006    return idx ;
1007  }
1008  Int addDataDescription( Int pid, Int sid )
1009  {
1010    Int idx = -1 ;
1011    uInt nItem = 2 ;
1012    uInt len = ddEntry.nelements() ;
1013    uInt nEntry = len / nItem ;
1014    const Int *dd_p = ddEntry.storage() ;
1015    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1016      Int pol = *dd_p ;
1017      dd_p++ ;
1018      Int spw = *dd_p ;
1019      dd_p++ ;
1020      if ( pid == pol && sid == spw ) {
1021        idx = i ;
1022        break ;
1023      }
1024    }
1025
1026    if ( idx == -1 ) {
1027      uInt nrow = ddtab.nrow() ;
1028      ddtab.addRow( 1, True ) ;
1029      TableRow tr( ddtab ) ;
1030      TableRecord &r = tr.record() ;
1031      putField( "POLARIZATION_ID", r, pid ) ;
1032      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1033      tr.put( nrow ) ;
1034      idx = nrow ;
1035
1036      ddEntry.resize( len+nItem ) ;
1037      ddEntry[len] = pid ;
1038      ddEntry[len+1] = sid ;
1039    }
1040
1041    return idx ;
1042  }
1043  void infillSpectralWindow()
1044  {
1045    ROScalarColumn<Int> nchanCol( spwtab, "NUM_CHAN" ) ;
1046    Vector<Int> nchan = nchanCol.getColumn() ;
1047    TableRow tr( spwtab ) ;
1048    TableRecord &r = tr.record() ;
1049    Int mfr = 1 ;
1050    Vector<Double> dummy( 1, 0.0 ) ;
1051    putField( "MEAS_FREQ_REF", r, mfr ) ;
1052    defineField( "CHAN_FREQ", r, dummy ) ;
1053    defineField( "CHAN_WIDTH", r, dummy ) ;
1054    defineField( "EFFECTIVE_BW", r, dummy ) ;
1055    defineField( "RESOLUTION", r, dummy ) ;
1056
1057    for ( uInt i = 0 ; i < spwtab.nrow() ; i++ ) {
1058      if ( nchan[i] == 0 )
1059        tr.put( i ) ;
1060    }
1061  }
1062  void addSpectralWindow( Int sid, uInt fid )
1063  {
1064    if (processedFreqId.find((uInt)fid) == processedFreqId.end()
1065        || processedIFNO.find((uInt)sid) == processedIFNO.end() ) {
1066      uInt nrow = spwtab.nrow() ;
1067      while( (Int)nrow <= sid ) {
1068        spwtab.addRow( 1, True ) ;
1069        nrow++ ;
1070      }
1071      processedFreqId.insert((uInt)fid);
1072      processedIFNO.insert((uInt)sid);
1073    }
1074    else {
1075      return ;
1076    }
1077     
1078
1079    Double rp = refpix[fid] ;
1080    Double rv = refval[fid] ;
1081    Double ic = increment[fid] ;
1082
1083    Int mfrInt = (Int)freqframe ;
1084    Int nchan = holder->nChan() ;
1085    Double bw = nchan * abs( ic ) ;
1086    Double reffreq = rv - rp * ic ;
1087    Int netsb = 0 ; // USB->0, LSB->1
1088    if ( ic < 0 )
1089      netsb = 1 ;
1090    Vector<Double> res( nchan, abs(ic) ) ;
1091    Vector<Double> cw( nchan, ic ) ;
1092    Vector<Double> chanf( nchan ) ;
1093    indgen( chanf, reffreq, ic ) ;
1094
1095    TableRow tr( spwtab ) ;
1096    TableRecord &r = tr.record() ;
1097    putField( "MEAS_FREQ_REF", r, mfrInt ) ;
1098    putField( "NUM_CHAN", r, nchan ) ;
1099    putField( "TOTAL_BANDWIDTH", r, bw ) ;
1100    putField( "REF_FREQUENCY", r, reffreq ) ;
1101    putField( "NET_SIDEBAND", r, netsb ) ;
1102    defineField( "RESOLUTION", r, res ) ;
1103//     defineField( "CHAN_WIDTH", r, res ) ;
1104    defineField( "CHAN_WIDTH", r, cw ) ;
1105    defineField( "EFFECTIVE_BW", r, res ) ;
1106    defineField( "CHAN_FREQ", r, chanf ) ;
1107    tr.put( sid ) ;
1108  }
1109  void addFeed( Int fid, Int sid )
1110  {
1111    Int idx = -1 ;
1112    uInt nItem = 2 ;
1113    uInt len = feedEntry.nelements() ;
1114    uInt nEntry = len / nItem ;
1115    const Int *fe_p = feedEntry.storage() ;
1116    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1117      Int feed = *fe_p ;
1118      fe_p++ ;
1119      Int spw = *fe_p ;
1120      fe_p++ ;
1121      if ( fid == feed && sid == spw ) {
1122        idx = i ;
1123        break ;
1124      }
1125    }
1126
1127
1128    if ( idx == -1 ) {
1129      uInt nrow = feedtab.nrow() ;
1130      feedtab.addRow( 1, True ) ;
1131      Int numReceptors = 2 ;
1132      Vector<String> polType( numReceptors ) ;
1133      Matrix<Double> beamOffset( 2, numReceptors, 0.0 ) ;
1134      Vector<Double> receptorAngle( numReceptors, 0.0 ) ;
1135      if ( poltype == "linear" ) {
1136        polType[0] = "X" ;
1137        polType[1] = "Y" ;
1138      }
1139      else if ( poltype == "circular" ) {
1140        polType[0] = "R" ;
1141        polType[1] = "L" ;
1142      }
1143      else {
1144        polType[0] = "X" ;
1145        polType[1] = "Y" ;
1146      }
1147      Matrix<Complex> polResponse( numReceptors, numReceptors, 0.0 ) ;
1148     
1149      TableRow tr( feedtab ) ;
1150      TableRecord &r = tr.record() ;
1151      putField( "FEED_ID", r, fid ) ;
1152      putField( "BEAM_ID", r, fid ) ;
1153      Int tmp = 0 ;
1154      putField( "ANTENNA_ID", r, tmp ) ;
1155      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1156      putField( "NUM_RECEPTORS", r, numReceptors ) ;
1157      defineField( "POLARIZATION_TYPE", r, polType ) ;
1158      defineField( "BEAM_OFFSET", r, beamOffset ) ;
1159      defineField( "RECEPTOR_ANGLE", r, receptorAngle ) ;
1160      defineField( "POL_RESPONSE", r, polResponse ) ;
1161      tr.put( nrow ) ;
1162
1163      feedEntry.resize( len+nItem ) ;
1164      feedEntry[len] = fid ;
1165      feedEntry[len+1] = sid ;
1166    }
1167  }
1168  void initPolarization()
1169  {
1170    const TableRecord &keys = table.keywordSet() ;
1171    poltype = keys.asString( "POLTYPE" ) ;
1172
1173    initCorrProductTemplate() ;
1174  }
1175  void initFrequencies()
1176  {
1177    const TableRecord &keys = table.keywordSet() ;
1178    Table tab = keys.asTable( "FREQUENCIES" ) ;
1179    ROScalarColumn<uInt> idcol( tab, "ID" ) ;
1180    ROScalarColumn<Double> rpcol( tab, "REFPIX" ) ;
1181    ROScalarColumn<Double> rvcol( tab, "REFVAL" ) ;
1182    ROScalarColumn<Double> iccol( tab, "INCREMENT" ) ;
1183    Vector<uInt> id = idcol.getColumn() ;
1184    Vector<Double> rp = rpcol.getColumn() ;
1185    Vector<Double> rv = rvcol.getColumn() ;
1186    Vector<Double> ic = iccol.getColumn() ;
1187    for ( uInt i = 0 ; i < id.nelements() ; i++ ) {
1188      refpix.insert( pair<uInt,Double>( id[i], rp[i] ) ) ;
1189      refval.insert( pair<uInt,Double>( id[i], rv[i] ) ) ;
1190      increment.insert( pair<uInt,Double>( id[i], ic[i] ) ) ;
1191    }
1192    String frameStr = tab.keywordSet().asString( "BASEFRAME" ) ;
1193    MFrequency::getType( freqframe, frameStr ) ;
1194  }
1195  void attachSubtables()
1196  {
1197    //const TableRecord &keys = table.keywordSet() ;
1198    TableRecord &mskeys = ms.rwKeywordSet() ;
1199
1200    // FIELD table
1201    fieldtab = mskeys.asTable( "FIELD" ) ;
1202
1203    // SPECTRAL_WINDOW table
1204    spwtab = mskeys.asTable( "SPECTRAL_WINDOW" ) ;
1205
1206    // POINTING table
1207    potab = mskeys.asTable( "POINTING" ) ;
1208
1209    // POLARIZATION table
1210    poltab = mskeys.asTable( "POLARIZATION" ) ;
1211
1212    // DATA_DESCRIPTION table
1213    ddtab = mskeys.asTable( "DATA_DESCRIPTION" ) ;
1214
1215    // STATE table
1216    statetab = mskeys.asTable( "STATE" ) ;
1217
1218    // FEED table
1219    feedtab = mskeys.asTable( "FEED" ) ;
1220  }
1221  void attachMain()
1222  {
1223    TableRecord &r = row.record() ;
1224    dataDescIdRF.attachToRecord( r, "DATA_DESC_ID" ) ;
1225    timeRF.attachToRecord( r, "TIME" ) ;
1226    timeCentroidRF.attachToRecord( r, "TIME_CENTROID" ) ;
1227    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1228    exposureRF.attachToRecord( r, "EXPOSURE" ) ;
1229    fieldIdRF.attachToRecord( r, "FIELD_ID" ) ;
1230    feed1RF.attachToRecord( r, "FEED1" ) ;
1231    feed2RF.attachToRecord( r, "FEED2" ) ;
1232    scanNumberRF.attachToRecord( r, "SCAN_NUMBER" ) ;
1233    stateIdRF.attachToRecord( r, "STATE_ID" ) ;
1234
1235    // constant values
1236    //Int id = 0 ;
1237    RecordFieldPtr<Int> intRF( r, "OBSERVATION_ID" ) ;
1238    *intRF = 0 ;
1239    intRF.attachToRecord( r, "ANTENNA1" ) ;
1240    *intRF = 0 ;
1241    intRF.attachToRecord( r, "ANTENNA2" ) ;
1242    *intRF = 0 ;
1243    intRF.attachToRecord( r, "ARRAY_ID" ) ;
1244    *intRF = 0 ;
1245    intRF.attachToRecord( r, "PROCESSOR_ID" ) ;
1246    *intRF = 0 ;
1247    RecordFieldPtr< Vector<Double> > arrayRF( r, "UVW" ) ;
1248    arrayRF.define( Vector<Double>( 3, 0.0 ) ) ;
1249  }
1250  void attachPointing()
1251  {
1252    porow = TableRow( potab ) ;
1253    TableRecord &r = porow.record() ;
1254    poNumPolyRF.attachToRecord( r, "NUM_POLY" ) ;
1255    poTimeRF.attachToRecord( r, "TIME" ) ;
1256    poTimeOriginRF.attachToRecord( r, "TIME_ORIGIN" ) ;
1257    poIntervalRF.attachToRecord( r, "INTERVAL" ) ;
1258    poNameRF.attachToRecord( r, "NAME" ) ;
1259    poDirectionRF.attachToRecord( r, "DIRECTION" ) ;
1260    poTargetRF.attachToRecord( r, "TARGET" ) ;
1261   
1262    // constant values
1263    RecordFieldPtr<Int> antIdRF( r, "ANTENNA_ID" ) ;
1264    *antIdRF = 0 ;
1265    RecordFieldPtr<Bool> trackingRF( r, "TRACKING" ) ;
1266    *trackingRF = True ;
1267  }
1268  void queryType( Int type, String &stype, Bool &b, Double &t, Double &l )
1269  {
1270    t = 0.0 ;
1271    l = 0.0 ;
1272
1273    String sep1="#" ;
1274    String sep2="," ;
1275    String target="OBSERVE_TARGET" ;
1276    String atmcal="CALIBRATE_TEMPERATURE" ;
1277    String onstr="ON_SOURCE" ;
1278    String offstr="OFF_SOURCE" ;
1279    String pswitch="POSITION_SWITCH" ;
1280    String nod="NOD" ;
1281    String fswitch="FREQUENCY_SWITCH" ;
1282    String sigstr="SIG" ;
1283    String refstr="REF" ;
1284    String unspecified="UNSPECIFIED" ;
1285    String ftlow="LOWER" ;
1286    String fthigh="HIGHER" ;
1287    switch ( type ) {
1288    case SrcType::PSON:
1289      stype = target+sep1+onstr+sep2+pswitch ;
1290      b = True ;
1291      break ;
1292    case SrcType::PSOFF:
1293      stype = target+sep1+offstr+sep2+pswitch ;
1294      b = False ;
1295      break ;
1296    case SrcType::NOD:
1297      stype = target+sep1+onstr+sep2+nod ;
1298      b = True ;
1299      break ;
1300    case SrcType::FSON:
1301      stype = target+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1302      b = True ;
1303      break ;
1304    case SrcType::FSOFF:
1305      stype = target+sep1+onstr+sep2+fswitch+sep1+refstr ;
1306      b = False ;
1307      break ;
1308    case SrcType::SKY:
1309      stype = atmcal+sep1+offstr+sep2+unspecified ;
1310      b = False ;
1311      break ;
1312    case SrcType::HOT:
1313      stype = atmcal+sep1+offstr+sep2+unspecified ;
1314      b = False ;
1315      break ;
1316    case SrcType::WARM:
1317      stype = atmcal+sep1+offstr+sep2+unspecified ;
1318      b = False ;
1319      break ;
1320    case SrcType::COLD:
1321      stype = atmcal+sep1+offstr+sep2+unspecified ;
1322      b = False ;
1323      break ;
1324    case SrcType::PONCAL:
1325      stype = atmcal+sep1+onstr+sep2+pswitch ;
1326      b = True ;
1327      break ;
1328    case SrcType::POFFCAL:
1329      stype = atmcal+sep1+offstr+sep2+pswitch ;
1330      b = False ;
1331      break ;
1332    case SrcType::NODCAL:
1333      stype = atmcal+sep1+onstr+sep2+nod ;
1334      b = True ;
1335      break ;
1336    case SrcType::FONCAL:
1337      stype = atmcal+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1338      b = True ;
1339      break ;
1340    case SrcType::FOFFCAL:
1341      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+refstr ;
1342      b = False ;
1343      break ;
1344    case SrcType::FSLO:
1345      stype = target+sep1+onstr+sep2+fswitch+sep1+ftlow ;
1346      b = True ;
1347      break ;
1348    case SrcType::FLOOFF:
1349      stype = target+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1350      b = False ;
1351      break ;
1352    case SrcType::FLOSKY:
1353      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1354      b = False ;
1355      break ;
1356    case SrcType::FLOHOT:
1357      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1358      b = False ;
1359      break ;
1360    case SrcType::FLOWARM:
1361      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1362      b = False ;
1363      break ;
1364    case SrcType::FLOCOLD:
1365      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1366      b = False ;
1367      break ;
1368    case SrcType::FSHI:
1369      stype = target+sep1+onstr+sep2+fswitch+sep1+fthigh ;
1370      b = True ;
1371      break ;
1372    case SrcType::FHIOFF:
1373      stype = target+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1374      b = False ;
1375      break ;
1376    case SrcType::FHISKY:
1377      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1378      b = False ;
1379      break ;
1380    case SrcType::FHIHOT:
1381      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1382      b = False ;
1383      break ;
1384    case SrcType::FHIWARM:
1385      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1386      b = False ;
1387      break ;
1388    case SrcType::FHICOLD:
1389      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1390      b = False ;
1391      break ;
1392    case SrcType::SIG:
1393      stype = target+sep1+onstr+sep2+unspecified ;
1394      b = True ;
1395      break ;
1396    case SrcType::REF:
1397      stype = target+sep1+offstr+sep2+unspecified ;
1398      b = False ;
1399      break ;
1400    default:
1401      stype = unspecified ;
1402      b = True ;
1403      break ;
1404    }
1405  }
1406  void initCorrProductTemplate()
1407  {
1408    Int n = 1 ;
1409    {
1410      Matrix<Int> c( 2, n, 0 ) ;
1411      corrProductTemplate[n] = c ;
1412    }
1413    n = 2 ;
1414    {
1415      Matrix<Int> c( 2, n, 0 ) ;
1416      c.column( 1 ) = 1 ;
1417      corrProductTemplate[n] = c ;
1418    }
1419    n = 4 ;
1420    {
1421      Matrix<Int> c( 2, n, 0 ) ;
1422      c( 0, 2 ) = 1 ;
1423      c( 0, 3 ) = 1 ;
1424      c( 1, 1 ) = 1 ;
1425      c( 1, 3 ) = 1 ;
1426      corrProductTemplate[n] = c ;
1427    }
1428  }
1429
1430  Table &ms;
1431  TableRow row;
1432  uInt rowidx;
1433  String fieldName;
1434  Int fieldId;
1435  Int srcId;
1436  Int defaultFieldId;
1437  Int spwId;
1438  Int feedId;
1439  Int subscan;
1440  CountedPtr<DataHolder> holder;
1441  String ptName;
1442  Bool useFloat;
1443  String poltype;
1444
1445  // MS subtables
1446  Table spwtab;
1447  Table statetab;
1448  Table ddtab;
1449  Table poltab;
1450  Table fieldtab;
1451  Table feedtab;
1452  Table potab;
1453
1454  // Scantable MAIN columns
1455  ROArrayColumn<Float> spectraCol;
1456  ROArrayColumn<Double> directionCol,scanRateCol,sourceDirectionCol;
1457  ROArrayColumn<uChar> flagtraCol;
1458  ROTableColumn tcalIdCol,intervalCol,flagRowCol,timeCol,freqIdCol,
1459    sourceNameCol,fieldNameCol;
1460
1461  // MS MAIN columns
1462  RecordFieldPtr<Int> dataDescIdRF,fieldIdRF,feed1RF,feed2RF,
1463    scanNumberRF,stateIdRF;
1464  RecordFieldPtr<Double> timeRF,timeCentroidRF,intervalRF,exposureRF;
1465
1466  // MS POINTING columns
1467  TableRow porow;
1468  RecordFieldPtr<Int> poNumPolyRF ;
1469  RecordFieldPtr<Double> poTimeRF,
1470    poTimeOriginRF,
1471    poIntervalRF ;
1472  RecordFieldPtr<String> poNameRF ;
1473  RecordFieldPtr< Matrix<Double> > poDirectionRF,
1474    poTargetRF ;
1475
1476  Vector<String> stateEntry;
1477  Block<Int> ddEntry;
1478  Block<Int> feedEntry;
1479  vector< Vector<Int> > polEntry;
1480  set<uInt> processedFreqId;
1481  set<uInt> processedIFNO;
1482  map<uInt,Double> refpix;
1483  map<uInt,Double> refval;
1484  map<uInt,Double> increment;
1485  MFrequency::Types freqframe;
1486  Record srcRec;
1487  map< Int, Matrix<Int> > corrProductTemplate;
1488};
1489
1490class BaseMSSysCalVisitor: public TableVisitor {
1491  uInt lastRecordNo;
1492  uInt lastBeamNo, lastIfNo, lastPolNo;
1493  Double lastTime;
1494protected:
1495  const Table &table;
1496  uInt count;
1497public:
1498  BaseMSSysCalVisitor(const Table &table)
1499    : table(table)
1500  {
1501    count = 0;
1502  }
1503 
1504  virtual void enterBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1505  virtual void leaveBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1506  virtual void enterIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1507  virtual void leaveIfNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1508  virtual void enterPolNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1509  virtual void leavePolNo(const uInt /*recordNo*/, uInt /*columnValue*/) { }
1510  virtual void enterTime(const uInt /*recordNo*/, Double /*columnValue*/) { }
1511  virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) { }
1512
1513  virtual Bool visitRecord(const uInt /*recordNo*/,
1514                           const uInt /*beamNo*/,
1515                           const uInt /*ifNo*/,
1516                           const uInt /*polNo*/,
1517                           const Double /*time*/) { return True ;}
1518
1519  virtual Bool visit(Bool isFirst, const uInt recordNo,
1520                     const uInt nCols, void const *const colValues[]) {
1521    uInt beamNo, ifNo, polNo;
1522    Double time;
1523    { // prologue
1524      uInt i = 0;
1525      {
1526        const uInt *col = (const uInt *)colValues[i++];
1527        beamNo = col[recordNo];
1528      }
1529      {
1530        const uInt *col = (const uInt *)colValues[i++];
1531        ifNo = col[recordNo];
1532      }
1533      {
1534        const Double *col = (const Double *)colValues[i++];
1535        time = col[recordNo];
1536      }
1537      {
1538        const uInt *col = (const uInt *)colValues[i++];
1539        polNo = col[recordNo];
1540      }
1541      assert(nCols == i);
1542    }
1543
1544    if (isFirst) {
1545      enterBeamNo(recordNo, beamNo);
1546      enterIfNo(recordNo, ifNo);
1547      enterTime(recordNo, time);
1548      enterPolNo(recordNo, polNo);
1549    } else {
1550      if (lastBeamNo != beamNo) {
1551        leavePolNo(lastRecordNo, lastPolNo);
1552        leaveTime(lastRecordNo, lastTime);
1553        leaveIfNo(lastRecordNo, lastIfNo);
1554        leaveBeamNo(lastRecordNo, lastBeamNo);
1555
1556        enterBeamNo(recordNo, beamNo);
1557        enterIfNo(recordNo, ifNo);
1558        enterTime(recordNo, time);
1559        enterPolNo(recordNo, polNo);
1560      } else if (lastIfNo != ifNo) {
1561        leavePolNo(lastRecordNo, lastPolNo);
1562        leaveTime(lastRecordNo, lastTime);
1563        leaveIfNo(lastRecordNo, lastIfNo);
1564       
1565        enterIfNo(recordNo, ifNo);
1566        enterTime(recordNo, time);
1567        enterPolNo(recordNo, polNo);
1568      } else if (lastTime != time) {
1569        leavePolNo(lastRecordNo, lastPolNo);
1570        leaveTime(lastRecordNo, lastTime);
1571
1572        enterTime(recordNo, time);
1573        enterPolNo(recordNo, polNo);
1574      } else if (lastPolNo != polNo) {
1575        leavePolNo(lastRecordNo, lastPolNo);
1576        enterPolNo(recordNo, polNo);
1577      }
1578    }
1579    count++;
1580    Bool result = visitRecord(recordNo, beamNo, ifNo, polNo, time);
1581
1582    { // epilogue
1583      lastRecordNo = recordNo;
1584
1585      lastBeamNo = beamNo;
1586      lastIfNo = ifNo;
1587      lastPolNo = polNo;
1588      lastTime = time;
1589    }
1590    return result ;
1591  }
1592
1593  virtual void finish() {
1594    if (count > 0) {
1595      leavePolNo(lastRecordNo, lastPolNo);
1596      leaveTime(lastRecordNo, lastTime);
1597      leaveIfNo(lastRecordNo, lastIfNo);
1598      leaveBeamNo(lastRecordNo, lastBeamNo);
1599    }
1600  }
1601};
1602
1603class BaseTsysHolder
1604{
1605public:
1606  BaseTsysHolder( ROArrayColumn<Float> &tsysCol )
1607    : col( tsysCol ),
1608      nchan(0)
1609  {
1610    reset() ;
1611  }
1612  virtual ~BaseTsysHolder() {}
1613  virtual Array<Float> getTsys() = 0 ;
1614  void setNchan( uInt n ) { nchan = n ; }
1615  void appendTsys( uInt row )
1616  {
1617    Vector<Float> v = col( row ) ;
1618    uInt len = tsys.nrow() ;
1619    tsys.resize( len+1, nchan, True ) ;
1620    if ( v.nelements() == nchan )
1621      tsys.row( len ) = v ;
1622    else
1623      tsys.row( len ) = v[0] ;
1624  }
1625  void setTsys( uInt row, uInt idx )
1626  {
1627    if ( idx >= nrow() )
1628      appendTsys( row ) ;
1629    else {
1630      Vector<Float> v = col( row ) ;
1631      if ( v.nelements() == nchan )
1632        tsys.row( idx ) = v ;
1633      else
1634        tsys.row( idx ) = v[0] ;
1635    }
1636  }
1637  void reset()
1638  {
1639    tsys.resize() ;
1640  }
1641  uInt nrow() { return tsys.nrow() ; }
1642  Bool isEffective()
1643  {
1644    return ( !(tsys.empty()) && anyNE( tsys, (Float)1.0 ) ) ;
1645  }
1646  BaseTsysHolder &operator= ( const BaseTsysHolder &v )
1647  {
1648    if ( this != &v )
1649      tsys.assign( v.tsys ) ;
1650    return *this ;
1651  }
1652protected:
1653  ROArrayColumn<Float> col ;
1654  Matrix<Float> tsys ;
1655  uInt nchan ;
1656};
1657
1658class TsysHolder : public BaseTsysHolder
1659{
1660public:
1661  TsysHolder( ROArrayColumn<Float> &tsysCol )
1662    : BaseTsysHolder( tsysCol )
1663  {}
1664  virtual ~TsysHolder() {}
1665  virtual Array<Float> getTsys()
1666  {
1667    return tsys.column( 0 ) ;
1668  }
1669};
1670
1671class TsysSpectrumHolder : public BaseTsysHolder
1672{
1673public:
1674  TsysSpectrumHolder( ROArrayColumn<Float> &tsysCol )
1675    : BaseTsysHolder( tsysCol )
1676  {}
1677  virtual ~TsysSpectrumHolder() {}
1678  virtual Array<Float> getTsys()
1679  {
1680    return tsys ;
1681  }
1682};
1683
1684class BaseTcalProcessor
1685{
1686public:
1687  BaseTcalProcessor( ROArrayColumn<Float> &tcalCol )
1688    : col_( tcalCol )
1689  {}
1690  virtual ~BaseTcalProcessor() {}
1691  void setTcalId( Vector<uInt> &tcalId ) { id_.assign( tcalId ) ; }
1692  virtual Array<Float> getTcal() = 0 ;
1693protected:
1694  ROArrayColumn<Float> col_ ;
1695  Vector<uInt> id_ ;
1696};
1697
1698class TcalProcessor : public BaseTcalProcessor
1699{
1700public:
1701  TcalProcessor( ROArrayColumn<Float> &tcalCol )
1702    : BaseTcalProcessor( tcalCol )
1703  {}
1704  virtual ~TcalProcessor() {}
1705  virtual Array<Float> getTcal()
1706  {
1707    uInt npol = id_.nelements() ;
1708    Vector<Float> tcal( npol ) ;
1709    for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
1710      tcal[ipol] = col_( id_[ipol] ).data()[0] ;
1711    //cout << "TcalProcessor: tcal = " << tcal << endl ;
1712    return tcal ;
1713  }
1714};
1715
1716class TcalSpectrumProcessor : public BaseTcalProcessor
1717{
1718public:
1719  TcalSpectrumProcessor( ROArrayColumn<Float> &tcalCol )
1720    : BaseTcalProcessor( tcalCol )
1721  {}
1722  virtual ~TcalSpectrumProcessor() {}
1723  virtual Array<Float> getTcal()
1724  {
1725    uInt npol = id_.nelements() ;
1726    //Vector<Float> tcal0 = col_( 0 ) ;
1727    Vector<Float> tcal0 = col_( id_[0] ) ;
1728    uInt nchan = tcal0.nelements() ;
1729    Matrix<Float> tcal( npol, nchan ) ;
1730    tcal.row( 0 ) = tcal0 ;
1731    for ( uInt ipol = 1 ; ipol < npol ; ipol++ )
1732      tcal.row( ipol ) = col_( id_[ipol] ) ;
1733    return tcal ;
1734  }
1735};
1736
1737class MSSysCalVisitor : public BaseMSSysCalVisitor
1738{
1739public:
1740  MSSysCalVisitor( const Table &from, Table &to )
1741    : BaseMSSysCalVisitor( from ),
1742      sctab( to ),
1743      rowidx( 0 ),
1744      polno_()
1745  {
1746    scrow = TableRow( sctab ) ;
1747
1748    lastTcalId.resize() ;
1749    theTcalId.resize() ;
1750    startTime = 0.0 ;
1751    endTime = 0.0 ;
1752
1753    const TableRecord &keys = table.keywordSet() ;
1754    Table tcalTable = keys.asTable( "TCAL" ) ;
1755    tcalCol.attach( tcalTable, "TCAL" ) ;
1756    tsysCol.attach( table, "TSYS" ) ;
1757    tcalIdCol.attach( table, "TCAL_ID" ) ;
1758    intervalCol.attach( table, "INTERVAL" ) ;
1759    effectiveTcal.resize( tcalTable.nrow() ) ;
1760    for ( uInt irow = 0 ; irow < tcalTable.nrow() ; irow++ ) {
1761      if ( allEQ( tcalCol( irow ), (Float)1.0 ) )
1762        effectiveTcal[irow] = False ;
1763      else
1764        effectiveTcal[irow] = True ;
1765    }
1766   
1767    TableRecord &r = scrow.record() ;
1768    RecordFieldPtr<Int> antennaIdRF( r, "ANTENNA_ID" ) ;
1769    *antennaIdRF = 0 ;
1770    feedIdRF.attachToRecord( r, "FEED_ID" ) ;
1771    specWinIdRF.attachToRecord( r, "SPECTRAL_WINDOW_ID" ) ;
1772    timeRF.attachToRecord( r, "TIME" ) ;
1773    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1774    if ( r.isDefined( "TCAL" ) ) {
1775      tcalRF.attachToRecord( r, "TCAL" ) ;
1776      tcalProcessor = new TcalProcessor( tcalCol ) ;
1777    }
1778    else if ( r.isDefined( "TCAL_SPECTRUM" ) ) {
1779      tcalRF.attachToRecord( r, "TCAL_SPECTRUM" ) ;
1780      tcalProcessor = new TcalSpectrumProcessor( tcalCol ) ;
1781    }
1782    if ( r.isDefined( "TSYS" ) ) {
1783      tsysRF.attachToRecord( r, "TSYS" ) ;
1784      theTsys = new TsysHolder( tsysCol ) ;
1785      lastTsys = new TsysHolder( tsysCol ) ;
1786    }
1787    else {
1788      tsysRF.attachToRecord( r, "TSYS_SPECTRUM" ) ;
1789      theTsys = new TsysSpectrumHolder( tsysCol ) ;
1790      lastTsys = new TsysSpectrumHolder( tsysCol ) ;
1791    }
1792
1793  }
1794
1795  virtual void enterBeamNo(const uInt /*recordNo*/, uInt columnValue)
1796  {
1797    *feedIdRF = (Int)columnValue ;
1798  }
1799  virtual void leaveBeamNo(const uInt /*recordNo*/, uInt /*columnValue*/)
1800  {
1801  }
1802  virtual void enterIfNo(const uInt recordNo, uInt columnValue)
1803  {
1804    //cout << "enterIfNo" << endl ;
1805    ROArrayColumn<Float> sp( table, "SPECTRA" ) ;
1806    uInt nchan = sp( recordNo ).nelements() ;
1807    theTsys->setNchan( nchan ) ;
1808    lastTsys->setNchan( nchan ) ;
1809
1810    *specWinIdRF = (Int)columnValue ;
1811  }
1812  virtual void leaveIfNo(const uInt /*recordNo*/, uInt /*columnValue*/)
1813  {
1814    //cout << "leaveIfNo" << endl ;
1815    post() ;
1816    reset(true);
1817    startTime = 0.0 ;
1818    endTime = 0.0 ;
1819  }
1820  virtual void enterTime(const uInt recordNo, Double columnValue)
1821  {
1822    //cout << "enterTime" << endl ;
1823    interval = intervalCol.asdouble( recordNo ) ;
1824    // start time and end time
1825    if ( startTime == 0.0 ) {
1826      startTime = columnValue * 86400.0 - 0.5 * interval ;
1827      endTime = columnValue * 86400.0 + 0.5 * interval ;
1828    }
1829  }
1830  virtual void leaveTime(const uInt /*recordNo*/, Double columnValue)
1831  {
1832    //cout << "leaveTime" << endl ;
1833    if ( isUpdated() ) {
1834      post() ;
1835      *lastTsys = *theTsys ;
1836      lastTcalId = theTcalId ;
1837      reset(false);
1838      startTime = columnValue * 86400.0 - 0.5 * interval ;
1839      endTime = columnValue * 86400.0 + 0.5 * interval ;
1840    }
1841    else {
1842      endTime = columnValue * 86400.0 + 0.5 * interval ;
1843    }
1844  }
1845  virtual void enterPolNo(const uInt recordNo, uInt columnValue)
1846  {
1847    //cout << "enterPolNo" << endl ;
1848    Vector<Float> tsys = tsysCol( recordNo ) ;
1849    uInt tcalId = tcalIdCol.asuInt( recordNo ) ;
1850    polno_.insert( columnValue ) ;
1851    uInt numPol = polno_.size() ;
1852    if ( lastTsys->nrow() < numPol )
1853      lastTsys->appendTsys( recordNo ) ;
1854    if ( lastTcalId.nelements() <= numPol )
1855      appendTcalId( lastTcalId, tcalId, numPol-1 ) ;
1856    if ( theTsys->nrow() < numPol )
1857      theTsys->appendTsys( recordNo ) ;
1858    else {
1859      theTsys->setTsys( recordNo, numPol-1 ) ;
1860    }
1861    if ( theTcalId.nelements() < numPol )
1862      appendTcalId( theTcalId, tcalId, numPol-1 ) ;
1863    else
1864      setTcalId( theTcalId, tcalId, numPol-1 ) ;
1865  }
1866  virtual void leavePolNo( const uInt /*recordNo*/, uInt /*columnValue*/ )
1867  {
1868  }
1869   
1870private:
1871  void reset(bool completely)
1872  {
1873    if (completely) {
1874      lastTsys->reset() ;
1875      lastTcalId.resize() ;
1876    }
1877    theTsys->reset() ;
1878    theTcalId.resize() ;
1879    polno_.clear();
1880  }
1881  void appendTcalId( Vector<uInt> &v, uInt &elem, uInt polId )
1882  {
1883    v.resize( polId+1, True ) ;
1884    v[polId] = elem ;
1885  }
1886  void setTcalId( Vector<uInt> &v, uInt &elem, uInt polId )
1887  {
1888    v[polId] = elem ;
1889  }
1890  void post()
1891  {
1892    // check if given Tcal and Tsys is effective
1893    Bool isEffective = False ;
1894    for ( uInt ipol = 0 ; ipol < lastTcalId.nelements() ; ipol++ ) {
1895      if ( effectiveTcal[lastTcalId[ipol]] ) {
1896        isEffective = True ;
1897        break ;
1898      }
1899    }
1900    if ( !isEffective ) {
1901      if ( !(lastTsys->isEffective()) )
1902        return ;
1903    }
1904
1905    //cout << " interval: " << (endTime-startTime) << " lastTcalId = " << lastTcalId << endl ;
1906    Double midTime = 0.5 * ( startTime + endTime ) ;
1907    Double interval = endTime - startTime ;
1908    *timeRF = midTime ;
1909    *intervalRF = interval ;
1910    tcalProcessor->setTcalId( lastTcalId ) ;
1911    Array<Float> tcal = tcalProcessor->getTcal() ;
1912    Array<Float> tsys = lastTsys->getTsys() ;
1913    tcalRF.define( tcal ) ;
1914    tsysRF.define( tsys ) ;
1915    sctab.addRow( 1, True ) ;
1916    scrow.put( rowidx ) ;
1917    rowidx++ ;
1918  }
1919 
1920  Bool isUpdated()
1921  {
1922    Bool ret = (anyNE( theTcalId, lastTcalId ) || anyNE( theTsys->getTsys(), lastTsys->getTsys() )) ;
1923    return ret ;
1924  }
1925
1926  Table &sctab;
1927  TableRow scrow;
1928  uInt rowidx;
1929
1930  Double startTime,endTime,interval;
1931 
1932  CountedPtr<BaseTsysHolder> lastTsys,theTsys;
1933  Vector<uInt> lastTcalId,theTcalId;
1934  set<uInt> polno_;
1935  CountedPtr<BaseTcalProcessor> tcalProcessor ;
1936  Vector<Bool> effectiveTcal;
1937
1938  RecordFieldPtr<Int> feedIdRF,specWinIdRF;
1939  RecordFieldPtr<Double> timeRF,intervalRF;
1940  RecordFieldPtr< Array<Float> > tcalRF,tsysRF;
1941
1942  ROArrayColumn<Float> tsysCol,tcalCol;
1943  ROTableColumn tcalIdCol,intervalCol;
1944};
1945
1946MSWriter::MSWriter(CountedPtr<Scantable> stable)
1947  : table_(stable),
1948    mstable_(NULL),
1949    isWeather_(False),
1950    tcalSpec_(False),
1951    tsysSpec_(False),
1952    ptTabName_("")
1953{
1954  os_ = LogIO() ;
1955  os_.origin( LogOrigin( "MSWriter", "MSWriter()", WHERE ) ) ;
1956//   os_ << "MSWriter::MSWriter()" << LogIO::POST ;
1957
1958  // initialize writer
1959  init() ;
1960}
1961
1962MSWriter::~MSWriter()
1963{
1964  os_.origin( LogOrigin( "MSWriter", "~MSWriter()", WHERE ) ) ;
1965//   os_ << "MSWriter::~MSWriter()" << LogIO::POST ;
1966
1967  if ( mstable_ != 0 )
1968    delete mstable_ ;
1969}
1970
1971bool MSWriter::write(const string& filename, const Record& rec)
1972{
1973  os_.origin( LogOrigin( "MSWriter", "write()", WHERE ) ) ;
1974  //double startSec = mathutil::gettimeofday_sec() ;
1975  //os_ << "start MSWriter::write() startSec=" << startSec << LogIO::POST ;
1976
1977  filename_ = filename ;
1978
1979  // parsing MS options
1980  Bool overwrite = False ;
1981  if ( rec.isDefined( "ms" ) ) {
1982    Record msrec = rec.asRecord( "ms" ) ;
1983    if ( msrec.isDefined( "overwrite" ) ) {
1984      overwrite = msrec.asBool( "overwrite" ) ;
1985    }
1986  }
1987
1988  os_ << "Parsing MS options" << endl ;
1989  os_ << "   overwrite = " << overwrite << LogIO::POST ;
1990
1991  File file( filename_ ) ;
1992  if ( file.exists() ) {
1993    if ( overwrite ) {
1994      os_ << filename_ << " exists. Overwrite existing data... " << LogIO::POST ;
1995      if ( file.isRegular() ) RegularFile(file).remove() ;
1996      else if ( file.isDirectory() ) Directory(file).removeRecursive() ;
1997      else SymLink(file).remove() ;
1998    }
1999    else {
2000      os_ << LogIO::SEVERE << "ERROR: " << filename_ << " exists..." << LogIO::POST ;
2001      return False ;
2002    }
2003  }
2004
2005  // set up MS
2006  setupMS() ;
2007 
2008  // subtables
2009  // OBSERVATION
2010  fillObservation() ;
2011
2012  // ANTENNA
2013  fillAntenna() ;
2014
2015  // PROCESSOR
2016  fillProcessor() ;
2017
2018  // SOURCE
2019  fillSource() ;
2020
2021  // WEATHER
2022  if ( isWeather_ )
2023    fillWeather() ;
2024
2025  // SYSCAL
2026  fillSysCal() ;
2027
2028  /***
2029   * Start iteration using TableVisitor
2030   ***/
2031  {
2032    static const char *cols[] = {
2033      "FIELDNAME", "BEAMNO", "SCANNO", "IFNO", "SRCTYPE", "CYCLENO", "TIME",
2034      "POLNO",
2035      NULL
2036    };
2037    static const TypeManagerImpl<uInt> tmUInt;
2038    static const TypeManagerImpl<Int> tmInt;
2039    static const TypeManagerImpl<Double> tmDouble;
2040    static const TypeManagerImpl<String> tmString;
2041    static const TypeManager *const tms[] = {
2042      &tmString, &tmUInt, &tmUInt, &tmUInt, &tmInt, &tmUInt, &tmDouble, &tmUInt, NULL
2043    };
2044    //double t0 = mathutil::gettimeofday_sec() ;
2045    MSWriterVisitor myVisitor(table_->table(),*mstable_);
2046    //double t1 = mathutil::gettimeofday_sec() ;
2047    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2048    String dataColName = "FLOAT_DATA" ;
2049    if ( useData_ )
2050      dataColName = "DATA" ;
2051    myVisitor.dataColumnName( dataColName ) ;
2052    myVisitor.pointingTableName( ptTabName_ ) ;
2053    myVisitor.setSourceRecord( srcRec_ ) ;
2054    //double t2 = mathutil::gettimeofday_sec() ;
2055    traverseTable(table_->table(), cols, tms, &myVisitor);
2056    //double t3 = mathutil::gettimeofday_sec() ;
2057    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2058  }
2059  /***
2060   * End iteration using TableVisitor
2061   ***/
2062
2063  // ASDM tables
2064  const TableRecord &stKeys = table_->table().keywordSet() ;
2065  TableRecord &msKeys = mstable_->rwKeywordSet() ;
2066  uInt nfields = stKeys.nfields() ;
2067  for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) {
2068    String kname = stKeys.name( ifield ) ;
2069    if ( kname.find( "ASDM" ) != String::npos ) {
2070      String asdmpath = stKeys.asString( ifield ) ;
2071      os_ << "found ASDM table: " << asdmpath << LogIO::POST ;
2072      if ( Table::isReadable( asdmpath ) ) {
2073        Table newAsdmTab( asdmpath, Table::Old ) ;
2074        newAsdmTab.copy( filename_+"/"+kname, Table::New ) ;
2075        os_ << "add subtable: " << kname << LogIO::POST ;
2076        msKeys.defineTable( kname, Table( filename_+"/"+kname, Table::Old ) ) ;
2077      }
2078    }
2079  }
2080
2081  // replace POINTING table with original one if exists
2082  if ( ptTabName_ != "" ) {
2083    delete mstable_ ;
2084    mstable_ = 0 ;
2085    Table newPtTab( ptTabName_, Table::Old ) ;
2086    newPtTab.copy( filename_+"/POINTING", Table::New ) ;
2087  }
2088
2089  //double endSec = mathutil::gettimeofday_sec() ;
2090  //os_ << "end MSWriter::write() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2091
2092  os_ << "Exported data as MS" << LogIO::POST ;
2093
2094  return True ;
2095}
2096
2097void MSWriter::init()
2098{
2099//   os_.origin( LogOrigin( "MSWriter", "init()", WHERE ) ) ;
2100//   double startSec = mathutil::gettimeofday_sec() ;
2101//   os_ << "start MSWriter::init() startSec=" << startSec << LogIO::POST ;
2102 
2103  // access to scantable
2104  header_ = table_->getHeader() ;
2105
2106  // FLOAT_DATA? or DATA?
2107  if ( header_.npol > 2 ) {
2108    useFloatData_ = False ;
2109    useData_ = True ;
2110  }
2111  else {
2112    useFloatData_ = True ;
2113    useData_ = False ;
2114  }
2115
2116  // polarization type
2117  polType_ = header_.poltype ;
2118  if ( polType_ == "" )
2119    polType_ = "stokes" ;
2120  else if ( polType_.find( "linear" ) != String::npos )
2121    polType_ = "linear" ;
2122  else if ( polType_.find( "circular" ) != String::npos )
2123    polType_ = "circular" ;
2124  else if ( polType_.find( "stokes" ) != String::npos )
2125    polType_ = "stokes" ;
2126  else if ( polType_.find( "linpol" ) != String::npos )
2127    polType_ = "linpol" ;
2128  else
2129    polType_ = "notype" ;
2130
2131  // Check if some subtables are exists
2132  Bool isTcal = False ;
2133  if ( table_->tcal().table().nrow() != 0 ) {
2134    ROTableColumn col( table_->tcal().table(), "TCAL" ) ;
2135    if ( col.isDefined( 0 ) ) {
2136      os_ << "TCAL table exists: nrow=" << table_->tcal().table().nrow() << LogIO::POST ;
2137      isTcal = True ;
2138    }
2139    else {
2140      os_ << "No TCAL rows" << LogIO::POST ;
2141    }
2142  }
2143  else {
2144    os_ << "No TCAL rows" << LogIO::POST ;
2145  }
2146  if ( table_->weather().table().nrow() != 0 ) {
2147    ROTableColumn col( table_->weather().table(), "TEMPERATURE" ) ;
2148    if ( col.isDefined( 0 ) ) {
2149      os_ << "WEATHER table exists: nrow=" << table_->weather().table().nrow() << LogIO::POST ;
2150      isWeather_ =True ;
2151    }
2152    else {
2153      os_ << "No WEATHER rows" << LogIO::POST ;
2154    }
2155  }
2156  else {
2157    os_ << "No WEATHER rows" << LogIO::POST ;
2158  }
2159
2160  // Are TCAL_SPECTRUM and TSYS_SPECTRUM necessary?
2161  if ( header_.nchan != 1 ) {
2162    if ( isTcal ) {
2163      // examine TCAL subtable
2164      Table tcaltab = table_->tcal().table() ;
2165      ROArrayColumn<Float> tcalCol( tcaltab, "TCAL" ) ;
2166      for ( uInt irow = 0 ; irow < tcaltab.nrow() ; irow++ ) {
2167        if ( tcalCol( irow ).size() != 1 )
2168          tcalSpec_ = True ;
2169      }
2170    }
2171    // examine spectral data
2172    TableIterator iter0( table_->table(), "IFNO" ) ;
2173    while( !iter0.pastEnd() ) {
2174      Table t0( iter0.table() ) ;
2175      ROArrayColumn<Float> sharedFloatArrCol( t0, "SPECTRA" ) ;
2176      uInt len = sharedFloatArrCol( 0 ).size() ;
2177      if ( len != 1 ) {
2178        sharedFloatArrCol.attach( t0, "TSYS" ) ;
2179        if ( sharedFloatArrCol( 0 ).size() != 1 )
2180          tsysSpec_ = True ;
2181      }
2182      iter0.next() ;
2183    }
2184  }
2185
2186  // check if reference for POINTING table exists
2187  const TableRecord &rec = table_->table().keywordSet() ;
2188  if ( rec.isDefined( "POINTING" ) ) {
2189    ptTabName_ = rec.asString( "POINTING" ) ;
2190    if ( !Table::isReadable( ptTabName_ ) ) {
2191      ptTabName_ = "" ;
2192    }
2193  }
2194
2195//   double endSec = mathutil::gettimeofday_sec() ;
2196//   os_ << "end MSWriter::init() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2197}
2198
2199void MSWriter::setupMS()
2200{
2201//   os_.origin( LogOrigin( "MSWriter", "setupMS()", WHERE ) ) ;
2202//   double startSec = mathutil::gettimeofday_sec() ;
2203//   os_ << "start MSWriter::setupMS() startSec=" << startSec << LogIO::POST ;
2204 
2205  String dunit = table_->getHeader().fluxunit ;
2206
2207  TableDesc msDesc = MeasurementSet::requiredTableDesc() ;
2208  if ( useFloatData_ )
2209    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::FLOAT_DATA, 2 ) ;
2210  else if ( useData_ )
2211    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::DATA, 2 ) ;
2212
2213  SetupNewTable newtab( filename_, msDesc, Table::New ) ;
2214
2215  mstable_ = new MeasurementSet( newtab ) ;
2216
2217  TableColumn col ;
2218  if ( useFloatData_ )
2219    col.attach( *mstable_, "FLOAT_DATA" ) ;
2220  else if ( useData_ )
2221    col.attach( *mstable_, "DATA" ) ;
2222  col.rwKeywordSet().define( "UNIT", dunit ) ;
2223
2224  // create subtables
2225  TableDesc antennaDesc = MSAntenna::requiredTableDesc() ;
2226  SetupNewTable antennaTab( mstable_->antennaTableName(), antennaDesc, Table::New ) ;
2227  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::ANTENNA ), Table( antennaTab ) ) ;
2228
2229  TableDesc dataDescDesc = MSDataDescription::requiredTableDesc() ;
2230  SetupNewTable dataDescTab( mstable_->dataDescriptionTableName(), dataDescDesc, Table::New ) ;
2231  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DATA_DESCRIPTION ), Table( dataDescTab ) ) ;
2232
2233  TableDesc dopplerDesc = MSDoppler::requiredTableDesc() ;
2234  SetupNewTable dopplerTab( mstable_->dopplerTableName(), dopplerDesc, Table::New ) ;
2235  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DOPPLER ), Table( dopplerTab ) ) ;
2236
2237  TableDesc feedDesc = MSFeed::requiredTableDesc() ;
2238  SetupNewTable feedTab( mstable_->feedTableName(), feedDesc, Table::New ) ;
2239  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FEED ), Table( feedTab ) ) ;
2240
2241  TableDesc fieldDesc = MSField::requiredTableDesc() ;
2242  SetupNewTable fieldTab( mstable_->fieldTableName(), fieldDesc, Table::New ) ;
2243  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FIELD ), Table( fieldTab ) ) ;
2244
2245  TableDesc flagCmdDesc = MSFlagCmd::requiredTableDesc() ;
2246  SetupNewTable flagCmdTab( mstable_->flagCmdTableName(), flagCmdDesc, Table::New ) ;
2247  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FLAG_CMD ), Table( flagCmdTab ) ) ;
2248
2249  TableDesc freqOffsetDesc = MSFreqOffset::requiredTableDesc() ;
2250  SetupNewTable freqOffsetTab( mstable_->freqOffsetTableName(), freqOffsetDesc, Table::New ) ;
2251  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FREQ_OFFSET ), Table( freqOffsetTab ) ) ;
2252
2253  TableDesc historyDesc = MSHistory::requiredTableDesc() ;
2254  SetupNewTable historyTab( mstable_->historyTableName(), historyDesc, Table::New ) ;
2255  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::HISTORY ), Table( historyTab ) ) ;
2256
2257  TableDesc observationDesc = MSObservation::requiredTableDesc() ;
2258  SetupNewTable observationTab( mstable_->observationTableName(), observationDesc, Table::New ) ;
2259  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::OBSERVATION ), Table( observationTab ) ) ;
2260
2261  TableDesc pointingDesc = MSPointing::requiredTableDesc() ;
2262  SetupNewTable pointingTab( mstable_->pointingTableName(), pointingDesc, Table::New ) ;
2263  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POINTING ), Table( pointingTab ) ) ;
2264
2265  TableDesc polarizationDesc = MSPolarization::requiredTableDesc() ;
2266  SetupNewTable polarizationTab( mstable_->polarizationTableName(), polarizationDesc, Table::New ) ;
2267  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POLARIZATION ), Table( polarizationTab ) ) ;
2268
2269  TableDesc processorDesc = MSProcessor::requiredTableDesc() ;
2270  SetupNewTable processorTab( mstable_->processorTableName(), processorDesc, Table::New ) ;
2271  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::PROCESSOR ), Table( processorTab ) ) ;
2272
2273  TableDesc sourceDesc = MSSource::requiredTableDesc() ;
2274  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::TRANSITION, 1 ) ;
2275  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::REST_FREQUENCY, 1 ) ;
2276  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::SYSVEL, 1 ) ;
2277  SetupNewTable sourceTab( mstable_->sourceTableName(), sourceDesc, Table::New ) ;
2278  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SOURCE ), Table( sourceTab ) ) ;
2279
2280  TableDesc spwDesc = MSSpectralWindow::requiredTableDesc() ;
2281  SetupNewTable spwTab( mstable_->spectralWindowTableName(), spwDesc, Table::New ) ;
2282  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SPECTRAL_WINDOW ), Table( spwTab ) ) ;
2283
2284  TableDesc stateDesc = MSState::requiredTableDesc() ;
2285  SetupNewTable stateTab( mstable_->stateTableName(), stateDesc, Table::New ) ;
2286  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::STATE ), Table( stateTab ) ) ;
2287
2288  TableDesc sysCalDesc = MSSysCal::requiredTableDesc() ;
2289  if ( tcalSpec_ )
2290    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL_SPECTRUM, 2 ) ;
2291  else
2292    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL, 1 ) ;
2293  if ( tsysSpec_ )
2294    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS_SPECTRUM, 2 ) ;
2295  else
2296    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS, 1 ) ;
2297  SetupNewTable sysCalTab( mstable_->sysCalTableName(), sysCalDesc, Table::New ) ;
2298  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SYSCAL ), Table( sysCalTab ) ) ;
2299
2300  TableDesc weatherDesc = MSWeather::requiredTableDesc() ;
2301  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::TEMPERATURE ) ;
2302  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::PRESSURE ) ;
2303  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::REL_HUMIDITY ) ;
2304  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_SPEED ) ;
2305  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_DIRECTION ) ;
2306  SetupNewTable weatherTab( mstable_->weatherTableName(), weatherDesc, Table::New ) ;
2307  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::WEATHER ), Table( weatherTab ) ) ;
2308
2309  mstable_->initRefs() ;
2310
2311//   double endSec = mathutil::gettimeofday_sec() ;
2312//   os_ << "end MSWriter::setupMS() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2313}
2314
2315void MSWriter::fillObservation()
2316{
2317  //double startSec = mathutil::gettimeofday_sec() ;
2318  //os_ << "start MSWriter::fillObservation() startSec=" << startSec << LogIO::POST ;
2319
2320  // only 1 row
2321  mstable_->observation().addRow( 1, True ) ;
2322  MSObservationColumns msObsCols( mstable_->observation() ) ;
2323  msObsCols.observer().put( 0, header_.observer ) ;
2324  // tentatively put antennaname (from ANTENNA subtable)
2325  String hAntennaName = header_.antennaname ;
2326  String::size_type pos = hAntennaName.find( "//" ) ;
2327  String telescopeName ;
2328  if ( pos != String::npos ) {
2329    telescopeName = hAntennaName.substr( 0, pos ) ;
2330  }
2331  else {
2332    pos = hAntennaName.find( "@" ) ;
2333    telescopeName = hAntennaName.substr( 0, pos ) ;
2334  }
2335//   os_ << "telescopeName = " << telescopeName << LogIO::POST ;
2336  msObsCols.telescopeName().put( 0, telescopeName ) ;
2337  msObsCols.project().put( 0, header_.project ) ;
2338  //ScalarMeasColumn<MEpoch> timeCol( table_->table().sort("TIME"), "TIME" ) ;
2339  Table sortedtable = table_->table().sort("TIME") ;
2340  ScalarMeasColumn<MEpoch> timeCol( sortedtable, "TIME" ) ;
2341  Vector<MEpoch> trange( 2 ) ;
2342  trange[0] = timeCol( 0 ) ;
2343  trange[1] = timeCol( table_->nrow()-1 ) ;
2344  msObsCols.timeRangeMeas().put( 0, trange ) ;
2345
2346  //double endSec = mathutil::gettimeofday_sec() ;
2347  //os_ << "end MSWriter::fillObservation() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2348}
2349
2350void MSWriter::antennaProperty( String &name, String &m, String &t, Double &d )
2351{
2352  name.upcase() ;
2353 
2354  m = "ALT-AZ" ;
2355  t = "GROUND-BASED" ;
2356  if ( name.matches( Regex( "DV[0-9]+$" ) )
2357       || name.matches( Regex( "DA[0-9]+$" ) )
2358       || name.matches( Regex( "PM[0-9]+$" ) ) )
2359    d = 12.0 ;
2360  else if ( name.matches( Regex( "CM[0-9]+$" ) ) )
2361    d = 7.0 ;
2362  else if ( name.contains( "GBT" ) )
2363    d = 104.9 ;
2364  else if ( name.contains( "MOPRA" ) )
2365    d = 22.0 ;
2366  else if ( name.contains( "PKS" ) || name.contains( "PARKS" ) )
2367    d = 64.0 ;
2368  else if ( name.contains( "TIDBINBILLA" ) )
2369    d = 70.0 ;
2370  else if ( name.contains( "CEDUNA" ) )
2371    d = 30.0 ;
2372  else if ( name.contains( "HOBART" ) )
2373    d = 26.0 ;
2374  else if ( name.contains( "APEX" ) )
2375    d = 12.0 ;
2376  else if ( name.contains( "ASTE" ) )
2377    d = 10.0 ;
2378  else if ( name.contains( "NRO" ) )
2379    d = 45.0 ;
2380  else
2381    d = 1.0 ;
2382}
2383
2384void MSWriter::fillAntenna()
2385{
2386  //double startSec = mathutil::gettimeofday_sec() ;
2387  //os_ << "start MSWriter::fillAntenna() startSec=" << startSec << LogIO::POST ;
2388
2389  // only 1 row
2390  Table anttab = mstable_->antenna() ;
2391  anttab.addRow( 1, True ) ;
2392 
2393  Table &table = table_->table() ;
2394  const TableRecord &keys = table.keywordSet() ;
2395  String hAntName = keys.asString( "AntennaName" ) ;
2396  String::size_type pos = hAntName.find( "//" ) ;
2397  String antennaName ;
2398  String stationName ;
2399  if ( pos != String::npos ) {
2400    stationName = hAntName.substr( 0, pos ) ;
2401    hAntName = hAntName.substr( pos+2 ) ;
2402  }
2403  pos = hAntName.find( "@" ) ;
2404  if ( pos != String::npos ) {
2405    antennaName = hAntName.substr( 0, pos ) ;
2406    stationName = hAntName.substr( pos+1 ) ;
2407  }
2408  else {
2409    antennaName = hAntName ;
2410  }
2411  Vector<Double> antpos = keys.asArrayDouble( "AntennaPosition" ) ;
2412 
2413  String mount, atype ;
2414  Double diameter ;
2415  antennaProperty( antennaName, mount, atype, diameter ) ;
2416 
2417  TableRow tr( anttab ) ;
2418  TableRecord &r = tr.record() ;
2419  RecordFieldPtr<String> nameRF( r, "NAME" ) ;
2420  RecordFieldPtr<String> stationRF( r, "STATION" ) ;
2421  RecordFieldPtr<String> mountRF( r, "MOUNT" ) ;
2422  RecordFieldPtr<String> typeRF( r, "TYPE" ) ;
2423  RecordFieldPtr<Double> dishDiameterRF( r, "DISH_DIAMETER" ) ;
2424  RecordFieldPtr< Vector<Double> > positionRF( r, "POSITION" ) ;
2425  *nameRF = antennaName ;
2426  *mountRF = mount ;
2427  *typeRF = atype ;
2428  *dishDiameterRF = diameter ;
2429  *positionRF = antpos ;
2430  *stationRF = stationName ;
2431 
2432  tr.put( 0 ) ;
2433
2434  //double endSec = mathutil::gettimeofday_sec() ;
2435  //os_ << "end MSWriter::fillAntenna() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2436}
2437 
2438void MSWriter::fillProcessor()
2439{
2440//   double startSec = mathutil::gettimeofday_sec() ;
2441//   os_ << "start MSWriter::fillProcessor() startSec=" << startSec << LogIO::POST ;
2442 
2443  // only add empty 1 row
2444  MSProcessor msProc = mstable_->processor() ;
2445  msProc.addRow( 1, True ) ;
2446
2447//   double endSec = mathutil::gettimeofday_sec() ;
2448//   os_ << "end MSWriter::fillProcessor() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2449}
2450
2451void MSWriter::fillSource()
2452{
2453//   double startSec = mathutil::gettimeofday_sec() ;
2454//   os_ << "start MSWriter::fillSource() startSec=" << startSec << LogIO::POST ;
2455 
2456  // access to MS SOURCE subtable
2457  MSSource msSrc = mstable_->source() ;
2458
2459  // access to MOLECULE subtable
2460  STMolecules stm = table_->molecules() ;
2461
2462  Int srcId = 0 ;
2463  Vector<Double> restFreq ;
2464  Vector<String> molName ;
2465  Vector<String> fMolName ;
2466
2467  // row based
2468  TableRow row( msSrc ) ;
2469  TableRecord &rec = row.record() ;
2470  RecordFieldPtr<Int> srcidRF( rec, "SOURCE_ID" ) ;
2471  RecordFieldPtr<String> nameRF( rec, "NAME" ) ;
2472  RecordFieldPtr< Array<Double> > srcpmRF( rec, "PROPER_MOTION" ) ;
2473  RecordFieldPtr< Array<Double> > srcdirRF( rec, "DIRECTION" ) ;
2474  RecordFieldPtr<Int> numlineRF( rec, "NUM_LINES" ) ;
2475  RecordFieldPtr< Array<Double> > restfreqRF( rec, "REST_FREQUENCY" ) ;
2476  RecordFieldPtr< Array<Double> > sysvelRF( rec, "SYSVEL" ) ;
2477  RecordFieldPtr< Array<String> > transitionRF( rec, "TRANSITION" ) ;
2478  RecordFieldPtr<Double> timeRF( rec, "TIME" ) ;
2479  RecordFieldPtr<Double> intervalRF( rec, "INTERVAL" ) ;
2480  RecordFieldPtr<Int> spwidRF( rec, "SPECTRAL_WINDOW_ID" ) ;
2481
2482  //
2483  // ITERATION: SRCNAME
2484  //
2485  TableIterator iter0( table_->table(), "SRCNAME" ) ;
2486  while( !iter0.pastEnd() ) {
2487    //Table t0( iter0.table() ) ;
2488    Table t0 =  iter0.table()  ;
2489
2490    // get necessary information
2491    ROScalarColumn<String> srcNameCol( t0, "SRCNAME" ) ;
2492    String srcName = srcNameCol( 0 ) ;
2493    ROArrayColumn<Double> sharedDArrRCol( t0, "SRCPROPERMOTION" ) ;
2494    Vector<Double> srcPM = sharedDArrRCol( 0 ) ;
2495    sharedDArrRCol.attach( t0, "SRCDIRECTION" ) ;
2496    Vector<Double> srcDir = sharedDArrRCol( 0 ) ;
2497    ROScalarColumn<Double> srcVelCol( t0, "SRCVELOCITY" ) ;
2498    Double srcVel = srcVelCol( 0 ) ;
2499    srcRec_.define( srcName, srcId ) ;
2500
2501    // NAME
2502    *nameRF = srcName ;
2503
2504    // SOURCE_ID
2505    *srcidRF = srcId ;
2506
2507    // PROPER_MOTION
2508    *srcpmRF = srcPM ;
2509   
2510    // DIRECTION
2511    *srcdirRF = srcDir ;
2512
2513    //
2514    // ITERATION: MOLECULE_ID
2515    //
2516    TableIterator iter1( t0, "MOLECULE_ID" ) ;
2517    while( !iter1.pastEnd() ) {
2518      //Table t1( iter1.table() ) ;
2519      Table t1 = iter1.table() ;
2520
2521      // get necessary information
2522      ROScalarColumn<uInt> molIdCol( t1, "MOLECULE_ID" ) ;
2523      uInt molId = molIdCol( 0 ) ;
2524      stm.getEntry( restFreq, molName, fMolName, molId ) ;
2525
2526      uInt numFreq = restFreq.size() ;
2527     
2528      // NUM_LINES
2529      *numlineRF = numFreq ;
2530
2531      // REST_FREQUENCY
2532      *restfreqRF = restFreq ;
2533
2534      // TRANSITION
2535      //*transitionRF = fMolName ;
2536      Vector<String> transition ;
2537      if ( fMolName.size() != 0 ) {
2538        transition = fMolName ;
2539      }
2540      else if ( molName.size() != 0 ) {
2541        transition = molName ;
2542      }
2543      else {
2544        transition.resize( numFreq ) ;
2545        transition = "" ;
2546      }
2547      *transitionRF = transition ;
2548
2549      // SYSVEL
2550      Vector<Double> sysvelArr( numFreq, srcVel ) ;
2551      *sysvelRF = sysvelArr ;
2552
2553      //
2554      // ITERATION: IFNO
2555      //
2556      TableIterator iter2( t1, "IFNO" ) ;
2557      while( !iter2.pastEnd() ) {
2558        //Table t2( iter2.table() ) ;
2559        Table t2 = iter2.table() ;
2560        uInt nrow = msSrc.nrow() ;
2561
2562        // get necessary information
2563        ROScalarColumn<uInt> ifNoCol( t2, "IFNO" ) ;
2564        uInt ifno = ifNoCol( 0 ) ; // IFNO = SPECTRAL_WINDOW_ID
2565        Double midTime ;
2566        Double interval ;
2567        getValidTimeRange( midTime, interval, t2 ) ;
2568
2569        // fill SPECTRAL_WINDOW_ID
2570        *spwidRF = ifno ;
2571
2572        // fill TIME, INTERVAL
2573        *timeRF = midTime ;
2574        *intervalRF = interval ;
2575
2576        // add row
2577        msSrc.addRow( 1, True ) ;
2578        row.put( nrow ) ;
2579
2580        iter2.next() ;
2581      }
2582
2583      iter1.next() ;
2584    }
2585
2586    // increment srcId if SRCNAME changed
2587    srcId++ ;
2588
2589    iter0.next() ;
2590  }
2591
2592//   double endSec = mathutil::gettimeofday_sec() ;
2593//   os_ << "end MSWriter::fillSource() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2594}
2595
2596void MSWriter::fillWeather()
2597{
2598//   double startSec = mathutil::gettimeofday_sec() ;
2599//   os_ << "start MSWriter::fillWeather() startSec=" << startSec << LogIO::POST ;
2600
2601  // access to MS WEATHER subtable
2602  MSWeather msw = mstable_->weather() ;
2603
2604  // access to WEATHER subtable
2605  Table stw = table_->weather().table() ;
2606  uInt nrow = stw.nrow() ;
2607
2608  if ( nrow == 0 )
2609    return ;
2610
2611  msw.addRow( nrow, True ) ;
2612  MSWeatherColumns mswCols( msw ) ;
2613
2614  // ANTENNA_ID is always 0
2615  Vector<Int> antIdArr( nrow, 0 ) ;
2616  mswCols.antennaId().putColumn( antIdArr ) ;
2617
2618  // fill weather status
2619  ROScalarColumn<Float> sharedFloatCol( stw, "TEMPERATURE" ) ;
2620  mswCols.temperature().putColumn( sharedFloatCol ) ;
2621  sharedFloatCol.attach( stw, "PRESSURE" ) ;
2622  mswCols.pressure().putColumn( sharedFloatCol ) ;
2623  sharedFloatCol.attach( stw, "HUMIDITY" ) ;
2624  mswCols.relHumidity().putColumn( sharedFloatCol ) ;
2625  sharedFloatCol.attach( stw, "WINDSPEED" ) ;
2626  mswCols.windSpeed().putColumn( sharedFloatCol ) ;
2627  sharedFloatCol.attach( stw, "WINDAZ" ) ;
2628  mswCols.windDirection().putColumn( sharedFloatCol ) ;
2629
2630  // fill TIME and INTERVAL
2631  Double midTime ;
2632  Double interval ;
2633  Vector<Double> intervalArr( nrow, 0.0 ) ;
2634  TableIterator iter( table_->table(), "WEATHER_ID" ) ;
2635  while( !iter.pastEnd() ) {
2636    //Table tab( iter.table() ) ;
2637    Table tab = iter.table() ;
2638
2639    ROScalarColumn<uInt> widCol( tab, "WEATHER_ID" ) ;
2640    uInt wid = widCol( 0 ) ;
2641
2642    getValidTimeRange( midTime, interval, tab ) ;
2643    mswCols.time().put( wid, midTime ) ;
2644    intervalArr[wid] = interval ;
2645
2646    iter.next() ;
2647  }
2648  mswCols.interval().putColumn( intervalArr ) ;
2649
2650//   double endSec = mathutil::gettimeofday_sec() ;
2651//   os_ << "end MSWriter::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2652}
2653
2654void MSWriter::fillSysCal()
2655{
2656  Table mssc = mstable_->sysCal() ;
2657
2658  {
2659    static const char *cols[] = {
2660      "BEAMNO", "IFNO", "TIME", "POLNO",
2661      NULL
2662    };
2663    static const TypeManagerImpl<uInt> tmUInt;
2664    static const TypeManagerImpl<Double> tmDouble;
2665    static const TypeManager *const tms[] = {
2666      &tmUInt, &tmUInt, &tmDouble, &tmUInt, NULL
2667    };
2668    //double t0 = mathutil::gettimeofday_sec() ;
2669    MSSysCalVisitor myVisitor(table_->table(),mssc);
2670    //double t1 = mathutil::gettimeofday_sec() ;
2671    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2672    traverseTable(table_->table(), cols, tms, &myVisitor);
2673    //double t3 = mathutil::gettimeofday_sec() ;
2674    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2675  }
2676 
2677}
2678
2679void MSWriter::getValidTimeRange( Double &me, Double &interval, Table &tab )
2680{
2681//   double startSec = mathutil::gettimeofday_sec() ;
2682//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2683
2684  // sort table
2685  //Table stab = tab.sort( "TIME" ) ;
2686
2687  ROScalarColumn<Double> timeCol( tab, "TIME" ) ;
2688  Vector<Double> timeArr = timeCol.getColumn() ;
2689  Double minTime ;
2690  Double maxTime ;
2691  minMax( minTime, maxTime, timeArr ) ;
2692  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2693  // unit for TIME
2694  // Scantable: "d"
2695  // MS: "s"
2696  me = midTime ;
2697  interval = ( maxTime - minTime ) * 86400.0 ;
2698
2699//   double endSec = mathutil::gettimeofday_sec() ;
2700//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2701}
2702
2703void MSWriter::getValidTimeRange( Double &me, Double &interval, Vector<Double> &atime, Vector<Double> &ainterval )
2704{
2705//   double startSec = mathutil::gettimeofday_sec() ;
2706//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2707
2708  // sort table
2709  //Table stab = tab.sort( "TIME" ) ;
2710
2711  Double minTime ;
2712  Double maxTime ;
2713  minMax( minTime, maxTime, atime ) ;
2714  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2715  // unit for TIME
2716  // Scantable: "d"
2717  // MS: "s"
2718  me = midTime ;
2719  interval = ( maxTime - minTime ) * 86400.0 + mean( ainterval ) ;
2720
2721//   double endSec = mathutil::gettimeofday_sec() ;
2722//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2723}
2724
2725}
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