source: trunk/src/MSWriter.cpp @ 2555

Last change on this file since 2555 was 2555, checked in by Takeshi Nakazato, 12 years ago

New Development: No

JIRA Issue: Yes CAS-4223

Ready for Test: Yes

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: new unit test will be added soon

Put in Release Notes: No

Module(s): Module Names change impacts.

Description: Describe your changes here...

CHAN_WIDTH is negative when frequency increment is negative.


File size: 76.4 KB
Line 
1//
2// C++ Interface: MSWriter
3//
4// Description:
5//
6// This class is specific writer for MS format
7//
8// Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2010
9//
10// Copyright: See COPYING file that comes with this distribution
11//
12//
13#include <assert.h>
14
15#include <casa/OS/File.h>
16#include <casa/OS/RegularFile.h>
17#include <casa/OS/Directory.h>
18#include <casa/OS/SymLink.h>
19#include <casa/BasicSL/String.h>
20#include <casa/Arrays/Cube.h>
21
22#include <tables/Tables/ExprNode.h>
23#include <tables/Tables/TableDesc.h>
24#include <tables/Tables/SetupNewTab.h>
25#include <tables/Tables/TableIter.h>
26#include <tables/Tables/RefRows.h>
27#include <tables/Tables/TableRow.h>
28
29#include <ms/MeasurementSets/MeasurementSet.h>
30#include <ms/MeasurementSets/MSColumns.h>
31#include <ms/MeasurementSets/MSPolIndex.h>
32#include <ms/MeasurementSets/MSDataDescIndex.h>
33#include <ms/MeasurementSets/MSSourceIndex.h>
34
35#include "MSWriter.h"
36#include "STHeader.h"
37#include "STFrequencies.h"
38#include "STMolecules.h"
39#include "STTcal.h"
40#include "MathUtils.h"
41#include "TableTraverse.h"
42
43using namespace casa ;
44using namespace std ;
45
46namespace asap {
47
48class CorrTypeHandler {
49public:
50  CorrTypeHandler()
51  {}
52  virtual ~CorrTypeHandler() {}
53  virtual Vector<Stokes::StokesTypes> corrType() = 0 ;
54  virtual void reset()
55  {
56    npol = 0 ;
57  }
58  void append( uInt polno )
59  {
60    polnos[npol] = polno ;
61    npol++ ;
62  }
63  uInt nPol() { return npol ; }
64protected:
65  Vector<Stokes::StokesTypes> polmap ;
66  uInt polnos[4] ;
67  uInt npol ;
68};
69
70class LinearHandler : public CorrTypeHandler {
71public:
72  LinearHandler()
73    : CorrTypeHandler()
74  {
75    initMap() ;
76  }
77  virtual ~LinearHandler() {}
78  virtual Vector<Stokes::StokesTypes> corrType()
79  {
80    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
81    if ( npol < 4 ) {
82      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
83        ret[ipol] = polmap[polnos[ipol]] ;
84    }
85    else if ( npol == 4 ) {
86      ret[0] = polmap[0] ;
87      ret[1] = polmap[2] ;
88      ret[2] = polmap[3] ;
89      ret[4] = polmap[1] ;
90    }
91    else {
92      throw( AipsError("npol > 4") ) ;
93    }
94    return ret ;
95  }
96protected:
97  void initMap()
98  {
99    polmap.resize( 4 ) ;
100    polmap[0] = Stokes::XX ;
101    polmap[1] = Stokes::YY ;
102    polmap[2] = Stokes::XY ;
103    polmap[3] = Stokes::YX ;
104  }
105};
106class CircularHandler : public CorrTypeHandler {
107public:
108  CircularHandler()
109    : CorrTypeHandler()
110  {
111    initMap() ;
112  }
113  virtual ~CircularHandler() {}
114  virtual Vector<Stokes::StokesTypes> corrType()
115  {
116    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
117    if ( npol < 4 ) {
118      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
119        ret[ipol] = polmap[polnos[ipol]] ;
120    }
121    else if ( npol == 4 ) {
122      ret[0] = polmap[0] ;
123      ret[1] = polmap[2] ;
124      ret[2] = polmap[3] ;
125      ret[3] = polmap[1] ;
126    }
127    else {
128      throw( AipsError("npol > 4") ) ;
129    }
130    return ret ;
131  }
132private:
133  void initMap()
134  {
135    polmap.resize( 4 ) ;
136    polmap[0] = Stokes::RR ;
137    polmap[1] = Stokes::LL ;
138    polmap[2] = Stokes::RL ;
139    polmap[3] = Stokes::LR ;
140  }
141};
142class StokesHandler : public CorrTypeHandler {
143public:
144  StokesHandler()
145    : CorrTypeHandler()
146  {
147    initMap() ;
148  }
149  virtual ~StokesHandler() {}
150  virtual Vector<Stokes::StokesTypes> corrType()
151  {
152    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
153    if ( npol <= 4 ) {
154      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
155        ret[ipol] = polmap[polnos[ipol]] ;
156    }
157    else {
158      throw( AipsError("npol > 4") ) ;
159    }
160    return ret ;
161  }
162private:
163  void initMap()
164  {
165    polmap.resize( 4 ) ;
166    polmap[0] = Stokes::I ;
167    polmap[1] = Stokes::Q ;
168    polmap[2] = Stokes::U ;
169    polmap[3] = Stokes::V ;
170  }
171};
172class LinPolHandler : public CorrTypeHandler {
173public:
174  LinPolHandler()
175    : CorrTypeHandler()
176  {
177    initMap() ;
178  }
179  virtual ~LinPolHandler() {}
180  virtual Vector<Stokes::StokesTypes> corrType()
181  {
182    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
183    if ( npol <= 2 ) {
184      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
185        ret[ipol] = polmap[polnos[ipol]] ;
186    }
187    else {
188      throw( AipsError("npol > 4") ) ;
189    }
190    return ret ;
191  }
192private:
193  void initMap()
194  {
195    polmap.resize( 2 ) ;
196    polmap[0] = Stokes::Plinear ;
197    polmap[1] = Stokes::Pangle ;
198  }
199};
200
201class DataHolder {
202public:
203  DataHolder( TableRow &tableRow, String polType )
204    : row( tableRow )
205  {
206    nchan = 0 ;
207    npol = 0 ;
208    makeCorrTypeHandler( polType ) ;
209    attach() ;
210    flagRow.resize( 4 ) ;
211    reset() ;
212    sigmaTemplate.resize( 4 ) ;
213    sigmaTemplate = 1.0 ;
214  }
215  virtual ~DataHolder() {}
216  virtual void post() = 0 ;
217  virtual void reset()
218  {
219    corr->reset() ;
220    flagRow = False ;
221    npol = 0 ;
222  }
223  virtual void accumulate( uInt id, Vector<Float> &sp, Vector<Bool> &fl, Bool &flr )
224  {
225    accumulateCorrType( id ) ;
226    accumulateData( id, sp ) ;
227    accumulateFlag( id, fl ) ;
228    accumulateFlagRow( id, flr ) ;
229  }
230  uInt nPol() { return npol ; }
231  uInt nChan() { return nchan ; }
232  Vector<Int> corrTypeInt()
233  {
234    Vector<Int> v( npol ) ;
235    convertArray( v, corr->corrType() ) ;
236    return v ;
237  }
238  Vector<Stokes::StokesTypes> corrType() { return corr->corrType() ; }
239  void setNchan( uInt num )
240  {
241    nchan = num ;
242    resize() ;
243  }
244protected:
245  void postAuxiliary()
246  {
247    Vector<Float> w = sigmaTemplate( IPosition(1,0), IPosition(1,npol-1) ) ;
248    sigmaRF.define( w ) ;
249    weightRF.define( w ) ;
250    Cube<Bool> c( npol, nchan, 1, False ) ;
251    flagCategoryRF.define( c ) ;
252  }
253  inline void accumulateCorrType( uInt &id )
254  {
255    corr->append( id ) ;
256    npol = corr->nPol() ;
257  }
258  inline void accumulateFlagRow( uInt &id, Bool &flr )
259  {
260    flagRow[id] = flr ;
261  }
262  void postFlagRow()
263  {
264    *flagRowRF = anyEQ( flagRow, True ) ;
265  }
266  inline void accumulateFlag( uInt &id, Vector<Bool> &fl )
267  {
268    flag.row( id ) = fl ;
269  }
270  virtual void postFlag() = 0 ;
271  inline void accumulateData( uInt &id, Vector<Float> &sp )
272  {
273    data.row( id ) = sp ;
274  }
275  virtual void postData() = 0 ;
276  TableRow &row ;
277  uInt nchan ;
278  uInt npol ;
279  CountedPtr<CorrTypeHandler> corr;
280  RecordFieldPtr< Vector<Float> > sigmaRF ;
281  RecordFieldPtr< Vector<Float> > weightRF ;
282  RecordFieldPtr< Array<Bool> > flagRF ;
283  RecordFieldPtr<Bool> flagRowRF ;
284  RecordFieldPtr< Cube<Bool> > flagCategoryRF ;
285  Vector<Bool> flagRow ;
286  Matrix<Bool> flag ;
287  Matrix<Float> data ;
288  Vector<Float> sigmaTemplate ;
289private:
290  void makeCorrTypeHandler( String &polType )
291  {
292    if ( polType == "linear" )
293      corr = new LinearHandler() ;
294    else if ( polType == "circular" )
295      corr = new CircularHandler() ;
296    else if ( polType == "stokes" )
297      corr = new StokesHandler() ;
298    else if ( polType == "linpol" )
299      corr = new LinPolHandler() ;
300    else
301      throw( AipsError("Invalid polarization type") ) ;
302  }
303  void attach()
304  {
305    TableRecord &rec = row.record() ;
306    sigmaRF.attachToRecord( rec, "SIGMA" ) ;
307    weightRF.attachToRecord( rec, "WEIGHT" ) ;
308    flagRF.attachToRecord( rec, "FLAG" ) ;
309    flagRowRF.attachToRecord( rec, "FLAG_ROW" ) ;
310    flagCategoryRF.attachToRecord( rec, "FLAG_CATEGORY" ) ;
311  }
312  void resize()
313  {
314    flag.resize( 4, nchan ) ;
315    data.resize( 4, nchan ) ;
316  }
317};
318
319class FloatDataHolder : public DataHolder {
320public:
321  FloatDataHolder( TableRow &tableRow, String polType )
322    : DataHolder( tableRow, polType )
323  {
324    attachData() ;
325  }
326  virtual ~FloatDataHolder() {}
327  virtual void post()
328  {
329    postData() ;
330    postFlag() ;
331    postFlagRow() ;
332    postAuxiliary() ;
333  }
334protected:
335  virtual void postFlag()
336  {
337    flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
338  }
339  virtual void postData()
340  {
341    dataRF.define( data( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
342  }
343private:
344  void attachData()
345  {
346    dataRF.attachToRecord( row.record(), "FLOAT_DATA" ) ;
347  }
348  RecordFieldPtr< Matrix<Float> > dataRF;
349};
350
351class ComplexDataHolder : public DataHolder {
352public:
353  ComplexDataHolder( TableRow &tableRow, String polType )
354    : DataHolder( tableRow, polType )
355  {
356    attachData() ;
357  }
358  virtual ~ComplexDataHolder() {}
359  virtual void accumulate( uInt id, Vector<Float> &sp, Vector<Bool> &fl, Bool &flr )
360  {
361    DataHolder::accumulate( id, sp, fl, flr ) ;
362    isFilled[id] = True ;
363  }
364  virtual void post()
365  {
366    postData() ;
367    postFlag() ;
368    postFlagRow() ;
369    postAuxiliary() ;
370  }
371  virtual void reset()
372  {
373    DataHolder::reset() ;
374    for ( uInt i = 0 ; i < 4 ; i++ )
375      isFilled[i] = False ;
376  }
377protected:
378  virtual void postFlag()
379  {
380    if ( npol == 4 ) {
381      Vector<Bool> tmp = flag.row( 3 ) ;
382      flag.row( 3 ) = flag.row( 1 ) ;
383      flag.row( 2 ) = flag.row( 2 ) || tmp ;
384      flag.row( 1 ) = flag.row( 2 ) ;
385      flagRF.define( flag ) ;
386    }
387    else {
388      flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
389    }
390  }
391  virtual void postData()
392  {
393    Matrix<Float> tmp( 2, nchan, 0.0 ) ;
394    Matrix<Complex> v( npol, nchan ) ;
395    if ( isFilled[0] ) {
396      tmp.row( 0 ) = data.row( 0 ) ;
397      v.row( 0 ) = RealToComplex( tmp ) ;
398    }
399    if ( isFilled[1] ) {
400      tmp.row( 0 ) = data.row( 1 ) ;
401      v.row( npol-1 ) = RealToComplex( tmp ) ;
402    }
403    if ( isFilled[2] && isFilled[3] ) {
404      tmp.row( 0 ) = data.row( 2 ) ;
405      tmp.row( 1 ) = data.row( 3 ) ;
406      v.row( 1 ) = RealToComplex( tmp ) ;
407      v.row( 2 ) = conj( v.row( 1 ) ) ;
408    }
409    dataRF.define( v ) ;
410  }
411private:
412  void attachData()
413  {
414    dataRF.attachToRecord( row.record(), "DATA" ) ;
415  }
416  RecordFieldPtr< Matrix<Complex> > dataRF;
417  Bool isFilled[4] ;
418};
419
420class BaseMSWriterVisitor: public TableVisitor {
421  const String *lastFieldName;
422  uInt lastRecordNo;
423  uInt lastBeamNo, lastScanNo, lastIfNo, lastPolNo;
424  Int lastSrcType;
425  uInt lastCycleNo;
426  Double lastTime;
427protected:
428  const Table &table;
429  uInt count;
430public:
431  BaseMSWriterVisitor(const Table &table)
432    : table(table)
433  {
434    static const String dummy;
435    lastFieldName = &dummy;
436    count = 0;
437  }
438 
439  virtual void enterFieldName(const uInt recordNo, const String &columnValue) {
440  }
441  virtual void leaveFieldName(const uInt recordNo, const String &columnValue) {
442  }
443  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) { }
444  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) { }
445  virtual void enterScanNo(const uInt recordNo, uInt columnValue) { }
446  virtual void leaveScanNo(const uInt recordNo, uInt columnValue) { }
447  virtual void enterIfNo(const uInt recordNo, uInt columnValue) { }
448  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) { }
449  virtual void enterSrcType(const uInt recordNo, Int columnValue) { }
450  virtual void leaveSrcType(const uInt recordNo, Int columnValue) { }
451  virtual void enterCycleNo(const uInt recordNo, uInt columnValue) { }
452  virtual void leaveCycleNo(const uInt recordNo, uInt columnValue) { }
453  virtual void enterTime(const uInt recordNo, Double columnValue) { }
454  virtual void leaveTime(const uInt recordNo, Double columnValue) { }
455  virtual void enterPolNo(const uInt recordNo, uInt columnValue) { }
456  virtual void leavePolNo(const uInt recordNo, uInt columnValue) { }
457
458  virtual Bool visitRecord(const uInt recordNo,
459                           const String &fieldName,
460                           const uInt beamNo,
461                           const uInt scanNo,
462                           const uInt ifNo,
463                           const Int srcType,
464                           const uInt cycleNo,
465                           const Double time,
466                           const uInt polNo) { return True ;}
467
468  virtual Bool visit(Bool isFirst, const uInt recordNo,
469                     const uInt nCols, void const *const colValues[]) {
470    const String *fieldName = NULL;
471    uInt beamNo, scanNo, ifNo;
472    Int srcType;
473    uInt cycleNo;
474    Double time;
475    uInt polNo;
476    { // prologue
477      uInt i = 0;
478      {
479        const String *col = (const String*)colValues[i++];
480        fieldName = &col[recordNo];
481      }
482      {
483        const uInt *col = (const uInt *)colValues[i++];
484        beamNo = col[recordNo];
485      }
486      {
487        const uInt *col = (const uInt *)colValues[i++];
488        scanNo = col[recordNo];
489      }
490      {
491        const uInt *col = (const uInt *)colValues[i++];
492        ifNo = col[recordNo];
493      }
494      {
495        const Int *col = (const Int *)colValues[i++];
496        srcType = col[recordNo];
497      }
498      {
499        const uInt *col = (const uInt *)colValues[i++];
500        cycleNo = col[recordNo];
501      }
502      {
503        const Double *col = (const Double *)colValues[i++];
504        time = col[recordNo];
505      }
506      {
507        const Int *col = (const Int *)colValues[i++];
508        polNo = col[recordNo];
509      }
510      assert(nCols == i);
511    }
512
513    if (isFirst) {
514      enterFieldName(recordNo, *fieldName);
515      enterBeamNo(recordNo, beamNo);
516      enterScanNo(recordNo, scanNo);
517      enterIfNo(recordNo, ifNo);
518      enterSrcType(recordNo, srcType);
519      enterCycleNo(recordNo, cycleNo);
520      enterTime(recordNo, time);
521      enterPolNo(recordNo, polNo);
522    } else {
523      if (lastFieldName->compare(*fieldName) != 0) {
524        leavePolNo(lastRecordNo, lastPolNo);
525        leaveTime(lastRecordNo, lastTime);
526        leaveCycleNo(lastRecordNo, lastCycleNo);
527        leaveSrcType(lastRecordNo, lastSrcType);
528        leaveIfNo(lastRecordNo, lastIfNo);
529        leaveScanNo(lastRecordNo, lastScanNo);
530        leaveBeamNo(lastRecordNo, lastBeamNo);
531        leaveFieldName(lastRecordNo, *lastFieldName);
532
533        enterFieldName(recordNo, *fieldName);
534        enterBeamNo(recordNo, beamNo);
535        enterScanNo(recordNo, scanNo);
536        enterIfNo(recordNo, ifNo);
537        enterSrcType(recordNo, srcType);
538        enterCycleNo(recordNo, cycleNo);
539        enterTime(recordNo, time);
540        enterPolNo(recordNo, polNo);
541      } else if (lastBeamNo != beamNo) {
542        leavePolNo(lastRecordNo, lastPolNo);
543        leaveTime(lastRecordNo, lastTime);
544        leaveCycleNo(lastRecordNo, lastCycleNo);
545        leaveSrcType(lastRecordNo, lastSrcType);
546        leaveIfNo(lastRecordNo, lastIfNo);
547        leaveScanNo(lastRecordNo, lastScanNo);
548        leaveBeamNo(lastRecordNo, lastBeamNo);
549
550        enterBeamNo(recordNo, beamNo);
551        enterScanNo(recordNo, scanNo);
552        enterIfNo(recordNo, ifNo);
553        enterSrcType(recordNo, srcType);
554        enterCycleNo(recordNo, cycleNo);
555        enterTime(recordNo, time);
556        enterPolNo(recordNo, polNo);
557      } else if (lastScanNo != scanNo) {
558        leavePolNo(lastRecordNo, lastPolNo);
559        leaveTime(lastRecordNo, lastTime);
560        leaveCycleNo(lastRecordNo, lastCycleNo);
561        leaveSrcType(lastRecordNo, lastSrcType);
562        leaveIfNo(lastRecordNo, lastIfNo);
563        leaveScanNo(lastRecordNo, lastScanNo);
564
565        enterScanNo(recordNo, scanNo);
566        enterIfNo(recordNo, ifNo);
567        enterSrcType(recordNo, srcType);
568        enterCycleNo(recordNo, cycleNo);
569        enterTime(recordNo, time);
570        enterPolNo(recordNo, polNo);
571      } else if (lastIfNo != ifNo) {
572        leavePolNo(lastRecordNo, lastPolNo);
573        leaveTime(lastRecordNo, lastTime);
574        leaveCycleNo(lastRecordNo, lastCycleNo);
575        leaveSrcType(lastRecordNo, lastSrcType);
576        leaveIfNo(lastRecordNo, lastIfNo);
577
578        enterIfNo(recordNo, ifNo);
579        enterSrcType(recordNo, srcType);
580        enterCycleNo(recordNo, cycleNo);
581        enterTime(recordNo, time);
582        enterPolNo(recordNo, polNo);
583      } else if (lastSrcType != srcType) {
584        leavePolNo(lastRecordNo, lastPolNo);
585        leaveTime(lastRecordNo, lastTime);
586        leaveCycleNo(lastRecordNo, lastCycleNo);
587        leaveSrcType(lastRecordNo, lastSrcType);
588
589        enterSrcType(recordNo, srcType);
590        enterCycleNo(recordNo, cycleNo);
591        enterTime(recordNo, time);
592        enterPolNo(recordNo, polNo);
593      } else if (lastCycleNo != cycleNo) {
594        leavePolNo(lastRecordNo, lastPolNo);
595        leaveTime(lastRecordNo, lastTime);
596        leaveCycleNo(lastRecordNo, lastCycleNo);
597
598        enterCycleNo(recordNo, cycleNo);
599        enterTime(recordNo, time);
600        enterPolNo(recordNo, polNo);
601      } else if (lastTime != time) {
602        leavePolNo(lastRecordNo, lastPolNo);
603        leaveTime(lastRecordNo, lastTime);
604
605        enterTime(recordNo, time);
606        enterPolNo(recordNo, polNo);
607      } else if (lastPolNo != polNo) {
608        leavePolNo(lastRecordNo, lastPolNo);
609        enterPolNo(recordNo, polNo);
610      }
611    }
612    count++;
613    Bool result = visitRecord(recordNo, *fieldName, beamNo, scanNo, ifNo, srcType,
614                              cycleNo, time, polNo);
615
616    { // epilogue
617      lastRecordNo = recordNo;
618
619      lastFieldName = fieldName;
620      lastBeamNo = beamNo;
621      lastScanNo = scanNo;
622      lastIfNo = ifNo;
623      lastSrcType = srcType;
624      lastCycleNo = cycleNo;
625      lastTime = time;
626      lastPolNo = polNo;
627    }
628    return result ;
629  }
630
631  virtual void finish() {
632    if (count > 0) {
633      leavePolNo(lastRecordNo, lastPolNo);
634      leaveTime(lastRecordNo, lastTime);
635      leaveCycleNo(lastRecordNo, lastCycleNo);
636      leaveSrcType(lastRecordNo, lastSrcType);
637      leaveIfNo(lastRecordNo, lastIfNo);
638      leaveScanNo(lastRecordNo, lastScanNo);
639      leaveBeamNo(lastRecordNo, lastBeamNo);
640      leaveFieldName(lastRecordNo, *lastFieldName);
641    }
642  }
643};
644
645class MSWriterVisitor: public BaseMSWriterVisitor, public MSWriterUtils {
646public:
647  MSWriterVisitor(const Table &table, Table &mstable)
648    : BaseMSWriterVisitor(table),
649      ms(mstable)
650  {
651    rowidx = 0 ;
652    fieldName = "" ;
653    defaultFieldId = 0 ;
654    spwId = -1 ;
655    subscan = 1 ;
656    ptName = "" ;
657    srcId = 0 ;
658   
659    row = TableRow( ms ) ;
660
661    initPolarization() ;
662    initFrequencies() ;
663
664    //
665    // add rows to MS
666    //
667    uInt addrow = table.nrow() ;
668    ms.addRow( addrow ) ;
669
670    // attach to Scantable columns
671    spectraCol.attach( table, "SPECTRA" ) ;
672    flagtraCol.attach( table, "FLAGTRA" ) ;
673    flagRowCol.attach( table, "FLAGROW" ) ;
674    tcalIdCol.attach( table, "TCAL_ID" ) ;
675    intervalCol.attach( table, "INTERVAL" ) ;
676    directionCol.attach( table, "DIRECTION" ) ;
677    scanRateCol.attach( table, "SCANRATE" ) ;
678    timeCol.attach( table, "TIME" ) ;
679    freqIdCol.attach( table, "FREQ_ID" ) ;
680    sourceNameCol.attach( table, "SRCNAME" ) ;
681    sourceDirectionCol.attach( table, "SRCDIRECTION" ) ;
682    fieldNameCol.attach( table, "FIELDNAME" ) ;
683
684    // MS subtables
685    attachSubtables() ;
686
687    // attach to MS columns
688    attachMain() ;
689    attachPointing() ;
690  }
691 
692  virtual void enterFieldName(const uInt recordNo, const String &columnValue) {
693    //printf("%u: FieldName: %s\n", recordNo, columnValue.c_str());
694    fieldName = fieldNameCol.asString( recordNo ) ;
695    String::size_type pos = fieldName.find( "__" ) ;
696    if ( pos != String::npos ) {
697      fieldId = String::toInt( fieldName.substr( pos+2 ) ) ;
698      fieldName = fieldName.substr( 0, pos ) ;
699    }
700    else {
701      fieldId = defaultFieldId ;
702      defaultFieldId++ ;
703    }
704    Double tSec = timeCol.asdouble( recordNo ) * 86400.0 ;
705    Vector<Double> srcDir = sourceDirectionCol( recordNo ) ;
706    Vector<Double> srate = scanRateCol( recordNo ) ;
707    String srcName = sourceNameCol.asString( recordNo ) ;
708
709    addField( fieldId, fieldName, srcName, srcDir, srate, tSec ) ;
710
711    // put value
712    *fieldIdRF = fieldId ;
713  }
714  virtual void leaveFieldName(const uInt recordNo, const String &columnValue) {
715  }
716  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) {
717    //printf("%u: BeamNo: %u\n", recordNo, columnValue);
718   
719    feedId = (Int)columnValue ;
720
721    // put value
722    *feed1RF = feedId ;
723    *feed2RF = feedId ;
724  }
725  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) {
726  }
727  virtual void enterScanNo(const uInt recordNo, uInt columnValue) {
728    //printf("%u: ScanNo: %u\n", recordNo, columnValue);
729
730    // put value
731    // SCAN_NUMBER is 0-based in Scantable while 1-based in MS
732    *scanNumberRF = (Int)columnValue + 1 ;
733  }
734  virtual void leaveScanNo(const uInt recordNo, uInt columnValue) {
735    subscan = 1 ;
736  }
737  virtual void enterIfNo(const uInt recordNo, uInt columnValue) {
738    //printf("%u: IfNo: %u\n", recordNo, columnValue);
739
740    spwId = (Int)columnValue ;
741    uInt freqId = freqIdCol.asuInt( recordNo ) ;
742
743    Vector<Float> sp = spectraCol( recordNo ) ;
744    uInt nchan = sp.nelements() ;
745    holder->setNchan( nchan ) ;
746
747    addSpectralWindow( spwId, freqId ) ;
748
749    addFeed( feedId, spwId ) ;
750  }
751  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) {
752  }
753  virtual void enterSrcType(const uInt recordNo, Int columnValue) {
754    //printf("%u: SrcType: %d\n", recordNo, columnValue);
755
756    Int stateId = addState( columnValue ) ;
757
758    // put value
759    *stateIdRF = stateId ;
760  }
761  virtual void leaveSrcType(const uInt recordNo, Int columnValue) {
762  }
763  virtual void enterCycleNo(const uInt recordNo, uInt columnValue) {
764    //printf("%u: CycleNo: %u\n", recordNo, columnValue);
765  }
766  virtual void leaveCycleNo(const uInt recordNo, uInt columnValue) {
767  }
768  virtual void enterTime(const uInt recordNo, Double columnValue) {
769    //printf("%u: Time: %f\n", recordNo, columnValue);
770
771    Double timeSec = columnValue * 86400.0 ;
772    Double interval = intervalCol.asdouble( recordNo ) ;
773
774    if ( ptName.empty() ) {
775      Vector<Double> dir = directionCol( recordNo ) ;
776      Vector<Double> rate = scanRateCol( recordNo ) ;
777      if ( anyNE( rate, 0.0 ) ) {
778        Matrix<Double> msdir( 2, 2 ) ;
779        msdir.column( 0 ) = dir ;
780        msdir.column( 1 ) = rate ;
781        addPointing( timeSec, interval, msdir ) ;
782      }
783      else {
784        Matrix<Double> msdir( 2, 1 ) ;
785        msdir.column( 0 ) = dir ;
786        addPointing( timeSec, interval, msdir ) ;
787      }
788    }
789
790    // put value
791    *timeRF = timeSec ;
792    *timeCentroidRF = timeSec ;
793    *intervalRF = interval ;
794    *exposureRF = interval ;
795  }
796  virtual void leaveTime(const uInt recordNo, Double columnValue) {
797    if ( holder->nPol() > 0 ) {
798      Int polId = addPolarization() ;
799      Int ddId = addDataDescription( polId, spwId ) ;
800       
801      // put field
802      *dataDescIdRF = ddId ;
803      holder->post() ;
804     
805      // commit row
806      row.put( rowidx ) ;
807      rowidx++ ;
808
809      // reset holder
810      holder->reset() ;
811    }
812  }
813  virtual void enterPolNo(const uInt recordNo, uInt columnValue) {
814    //printf("%u: PolNo: %d\n", recordNo, columnValue);
815  }
816  virtual void leavePolNo(const uInt recordNo, uInt columnValue) {
817  }
818
819  virtual Bool visitRecord(const uInt recordNo,
820                           const String &fieldName,
821                           const uInt beamNo,
822                           const uInt scanNo,
823                           const uInt ifNo,
824                           const Int srcType,
825                           const uInt cycleNo,
826                           const Double time,
827                           const uInt polNo) {
828    //printf("%u: %s, %u, %u, %u, %d, %u, %f, %d\n", recordNo,
829    //       fieldName.c_str(), beamNo, scanNo, ifNo, srcType, cycleNo, time, polNo);
830
831    Vector<Float> sp = spectraCol( recordNo ) ;
832    Vector<uChar> tmp = flagtraCol( recordNo ) ;
833    Vector<Bool> fl( tmp.shape() ) ;
834    convertArray( fl, tmp ) ;
835    Bool flr = (Bool)flagRowCol.asuInt( recordNo ) ;
836    holder->accumulate( polNo, sp, fl, flr ) ;
837
838    return True ;
839  }
840
841  virtual void finish() {
842    BaseMSWriterVisitor::finish();
843    //printf("Total: %u\n", count);
844
845    // remove rows
846    if ( ms.nrow() > rowidx ) {
847      uInt numRemove = ms.nrow() - rowidx ;
848      //cout << "numRemove = " << numRemove << endl ;
849      Vector<uInt> rows( numRemove ) ;
850      indgen( rows, rowidx ) ;
851      ms.removeRow( rows ) ;
852    }
853
854    // fill empty SPECTRAL_WINDOW rows
855    infillSpectralWindow() ;
856  }
857
858  void dataColumnName( String name )
859  {
860    if ( name == "DATA" )
861      holder = new ComplexDataHolder( row, poltype ) ;
862    else if ( name == "FLOAT_DATA" )
863      holder = new FloatDataHolder( row, poltype ) ;
864  }
865  void pointingTableName( String name ) {
866    ptName = name ;
867  }
868  void setSourceRecord( Record &r ) {
869    srcRec = r ;
870  }
871private:
872  void addField( Int &fid, String &fname, String &srcName,
873                 Vector<Double> &sdir, Vector<Double> &srate,
874                 Double &tSec )
875  {
876    uInt nrow = fieldtab.nrow() ;
877    while( (Int)nrow <= fid ) {
878      fieldtab.addRow( 1, True ) ;
879      nrow++ ;
880    }
881
882    Matrix<Double> dir ;
883    Int numPoly = 0 ;
884    if ( anyNE( srate, 0.0 ) ) {
885      dir.resize( 2, 2 ) ;
886      dir.column( 0 ) = sdir ;
887      dir.column( 1 ) = srate ;
888      numPoly = 1 ;
889    }
890    else {
891      dir.resize( 2, 1 ) ;
892      dir.column( 0 ) = sdir ;
893    }
894    srcId = srcRec.asInt( srcName ) ;
895
896    TableRow tr( fieldtab ) ;
897    TableRecord &r = tr.record() ;
898    putField( "NAME", r, fname ) ;
899    putField( "NUM_POLY", r, numPoly ) ;
900    putField( "TIME", r, tSec ) ;
901    putField( "SOURCE_ID", r, srcId ) ;
902    defineField( "DELAY_DIR", r, dir ) ;
903    defineField( "REFERENCE_DIR", r, dir ) ;
904    defineField( "PHASE_DIR", r, dir ) ;
905    tr.put( fid ) ;
906
907    // for POINTING table
908    *poNameRF = fname ;
909  }
910  Int addState( Int &id )
911  {
912    String obsMode ;
913    Bool isSignal ;
914    Double tnoise ;
915    Double tload ;
916    queryType( id, obsMode, isSignal, tnoise, tload ) ;
917
918    String key = obsMode+"_"+String::toString( subscan ) ;
919    Int idx = -1 ;
920    uInt nEntry = stateEntry.nelements() ;
921    for ( uInt i = 0 ; i < nEntry ; i++ ) {
922      if ( stateEntry[i] == key ) {
923        idx = i ;
924        break ;
925      }
926    }
927    if ( idx == -1 ) {
928      uInt nrow = statetab.nrow() ;
929      statetab.addRow( 1, True ) ;
930      TableRow tr( statetab ) ;
931      TableRecord &r = tr.record() ;
932      putField( "OBS_MODE", r, obsMode ) ;
933      putField( "SIG", r, isSignal ) ;
934      isSignal = !isSignal ;
935      putField( "REF", r, isSignal ) ;
936      putField( "CAL", r, tnoise ) ;
937      putField( "LOAD", r, tload ) ;
938      tr.put( nrow ) ;
939      idx = nrow ;
940
941      stateEntry.resize( nEntry+1, True ) ;
942      stateEntry[nEntry] = key ;
943    }
944    subscan++ ;
945
946    return idx ;
947  }
948  void addPointing( Double &tSec, Double &interval, Matrix<Double> &dir )
949  {
950    uInt nrow = potab.nrow() ;
951    potab.addRow( 1, True ) ;
952
953    *poNumPolyRF = dir.ncolumn() - 1 ;
954    *poTimeRF = tSec ;
955    *poTimeOriginRF = tSec ;
956    *poIntervalRF = interval ;
957    poDirectionRF.define( dir ) ;
958    poTargetRF.define( dir ) ;
959    porow.put( nrow ) ;
960  }
961  Int addPolarization()
962  {
963    Int idx = -1 ;
964    Vector<Int> corrType = holder->corrTypeInt() ;
965    uInt nEntry = polEntry.size() ;
966    for ( uInt i = 0 ; i < nEntry ; i++ ) {
967      if ( polEntry[i].conform( corrType ) && allEQ( polEntry[i], corrType ) ) {
968        idx = i ;
969        break ;
970      }
971    }
972   
973    Int numCorr = holder->nPol() ;
974    Matrix<Int> corrProduct = corrProductTemplate[numCorr] ;
975
976    if ( idx == -1 ) {
977      uInt nrow = poltab.nrow() ;
978      poltab.addRow( 1, True ) ;
979      TableRow tr( poltab ) ;
980      TableRecord &r = tr.record() ;
981      putField( "NUM_CORR", r, numCorr ) ;
982      defineField( "CORR_TYPE", r, corrType ) ;
983      defineField( "CORR_PRODUCT", r, corrProduct ) ;
984      tr.put( nrow ) ;
985      idx = nrow ;
986
987      polEntry.resize( nEntry+1 ) ;
988      polEntry[nEntry] = corrType ;
989    }
990
991    return idx ;
992  }
993  Int addDataDescription( Int pid, Int sid )
994  {
995    Int idx = -1 ;
996    uInt nEntry = ddEntry.nrow() ;
997    Vector<Int> key( 2 ) ;
998    key[0] = pid ;
999    key[1] = sid ;
1000    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1001      if ( allEQ( ddEntry.row(i), key ) ) {
1002        idx = i ;
1003        break ;
1004      }
1005    }
1006
1007    if ( idx == -1 ) {
1008      uInt nrow = ddtab.nrow() ;
1009      ddtab.addRow( 1, True ) ;
1010      TableRow tr( ddtab ) ;
1011      TableRecord &r = tr.record() ;
1012      putField( "POLARIZATION_ID", r, pid ) ;
1013      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1014      tr.put( nrow ) ;
1015      idx = nrow ;
1016
1017      ddEntry.resize( nEntry+1, 2, True ) ;
1018      ddEntry.row(nEntry) = key ;
1019    }
1020
1021    return idx ;
1022  }
1023  void infillSpectralWindow()
1024  {
1025    ROScalarColumn<Int> nchanCol( spwtab, "NUM_CHAN" ) ;
1026    Vector<Int> nchan = nchanCol.getColumn() ;
1027    TableRow tr( spwtab ) ;
1028    TableRecord &r = tr.record() ;
1029    Int mfr = 1 ;
1030    Vector<Double> dummy( 1, 0.0 ) ;
1031    putField( "MEAS_FREQ_REF", r, mfr ) ;
1032    defineField( "CHAN_FREQ", r, dummy ) ;
1033    defineField( "CHAN_WIDTH", r, dummy ) ;
1034    defineField( "EFFECTIVE_BW", r, dummy ) ;
1035    defineField( "RESOLUTION", r, dummy ) ;
1036
1037    for ( uInt i = 0 ; i < spwtab.nrow() ; i++ ) {
1038      if ( nchan[i] == 0 )
1039        tr.put( i ) ;
1040    }
1041  }
1042  void addSpectralWindow( Int sid, uInt fid )
1043  {
1044    if ( !processedFreqId[fid] ) {
1045      uInt nrow = spwtab.nrow() ;
1046      while( (Int)nrow <= sid ) {
1047        spwtab.addRow( 1, True ) ;
1048        nrow++ ;
1049      }
1050      processedFreqId[fid] = True ;
1051    }
1052
1053    Double rp = refpix[fid] ;
1054    Double rv = refval[fid] ;
1055    Double ic = increment[fid] ;
1056
1057    Int mfrInt = (Int)freqframe ;
1058    Int nchan = holder->nChan() ;
1059    Double bw = nchan * abs( ic ) ;
1060    Double reffreq = rv - rp * ic ;
1061    Int netsb = 0 ; // USB->0, LSB->1
1062    if ( ic < 0 )
1063      netsb = 1 ;
1064    Vector<Double> res( nchan, abs(ic) ) ;
1065    Vector<Double> cw( nchan, ic ) ;
1066    Vector<Double> chanf( nchan ) ;
1067    indgen( chanf, reffreq, ic ) ;
1068
1069    TableRow tr( spwtab ) ;
1070    TableRecord &r = tr.record() ;
1071    putField( "MEAS_FREQ_REF", r, mfrInt ) ;
1072    putField( "NUM_CHAN", r, nchan ) ;
1073    putField( "TOTAL_BANDWIDTH", r, bw ) ;
1074    putField( "REF_FREQUENCY", r, reffreq ) ;
1075    putField( "NET_SIDEBAND", r, netsb ) ;
1076    defineField( "RESOLUTION", r, res ) ;
1077//     defineField( "CHAN_WIDTH", r, res ) ;
1078    defineField( "CHAN_WIDTH", r, cw ) ;
1079    defineField( "EFFECTIVE_BW", r, res ) ;
1080    defineField( "CHAN_FREQ", r, chanf ) ;
1081    tr.put( sid ) ;
1082  }
1083  void addFeed( Int fid, Int sid )
1084  {
1085    Int idx = -1 ;
1086    uInt nEntry = feedEntry.nrow() ;
1087    Vector<Int> key( 2 ) ;
1088    key[0] = fid ;
1089    key[1] = sid ;
1090    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1091      if ( allEQ( feedEntry.row(i), key ) ) {
1092        idx = i ;
1093        break ;
1094      }
1095    }
1096
1097    if ( idx == -1 ) {
1098      uInt nrow = feedtab.nrow() ;
1099      feedtab.addRow( 1, True ) ;
1100      Int numReceptors = 2 ;
1101      Vector<String> polType( numReceptors ) ;
1102      Matrix<Double> beamOffset( 2, numReceptors, 0.0 ) ;
1103      Vector<Double> receptorAngle( numReceptors, 0.0 ) ;
1104      if ( poltype == "linear" ) {
1105        polType[0] = "X" ;
1106        polType[1] = "Y" ;
1107      }
1108      else if ( poltype == "circular" ) {
1109        polType[0] = "R" ;
1110        polType[1] = "L" ;
1111      }
1112      else {
1113        polType[0] = "X" ;
1114        polType[1] = "Y" ;
1115      }
1116      Matrix<Complex> polResponse( numReceptors, numReceptors, 0.0 ) ;
1117     
1118      TableRow tr( feedtab ) ;
1119      TableRecord &r = tr.record() ;
1120      putField( "FEED_ID", r, fid ) ;
1121      putField( "BEAM_ID", r, fid ) ;
1122      Int tmp = 0 ;
1123      putField( "ANTENNA_ID", r, tmp ) ;
1124      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1125      putField( "NUM_RECEPTORS", r, numReceptors ) ;
1126      defineField( "POLARIZATION_TYPE", r, polType ) ;
1127      defineField( "BEAM_OFFSET", r, beamOffset ) ;
1128      defineField( "RECEPTOR_ANGLE", r, receptorAngle ) ;
1129      defineField( "POL_RESPONSE", r, polResponse ) ;
1130      tr.put( nrow ) ;
1131
1132      feedEntry.resize( nEntry+1, 2, True ) ;
1133      feedEntry.row( nEntry ) = key ;
1134    }
1135  }
1136  void initPolarization()
1137  {
1138    const TableRecord &keys = table.keywordSet() ;
1139    poltype = keys.asString( "POLTYPE" ) ;
1140
1141    initCorrProductTemplate() ;
1142  }
1143  void initFrequencies()
1144  {
1145    const TableRecord &keys = table.keywordSet() ;
1146    Table tab = keys.asTable( "FREQUENCIES" ) ;
1147    ROScalarColumn<uInt> idcol( tab, "ID" ) ;
1148    ROScalarColumn<Double> rpcol( tab, "REFPIX" ) ;
1149    ROScalarColumn<Double> rvcol( tab, "REFVAL" ) ;
1150    ROScalarColumn<Double> iccol( tab, "INCREMENT" ) ;
1151    Vector<uInt> id = idcol.getColumn() ;
1152    Vector<Double> rp = rpcol.getColumn() ;
1153    Vector<Double> rv = rvcol.getColumn() ;
1154    Vector<Double> ic = iccol.getColumn() ;
1155    for ( uInt i = 0 ; i < id.nelements() ; i++ ) {
1156      processedFreqId.insert( pair<uInt,Bool>( id[i], False ) ) ;
1157      refpix.insert( pair<uInt,Double>( id[i], rp[i] ) ) ;
1158      refval.insert( pair<uInt,Double>( id[i], rv[i] ) ) ;
1159      increment.insert( pair<uInt,Double>( id[i], ic[i] ) ) ;
1160    }
1161    String frameStr = tab.keywordSet().asString( "BASEFRAME" ) ;
1162    MFrequency::getType( freqframe, frameStr ) ;
1163  }
1164  void attachSubtables()
1165  {
1166    const TableRecord &keys = table.keywordSet() ;
1167    TableRecord &mskeys = ms.rwKeywordSet() ;
1168
1169    // FIELD table
1170    fieldtab = mskeys.asTable( "FIELD" ) ;
1171
1172    // SPECTRAL_WINDOW table
1173    spwtab = mskeys.asTable( "SPECTRAL_WINDOW" ) ;
1174
1175    // POINTING table
1176    potab = mskeys.asTable( "POINTING" ) ;
1177
1178    // POLARIZATION table
1179    poltab = mskeys.asTable( "POLARIZATION" ) ;
1180
1181    // DATA_DESCRIPTION table
1182    ddtab = mskeys.asTable( "DATA_DESCRIPTION" ) ;
1183
1184    // STATE table
1185    statetab = mskeys.asTable( "STATE" ) ;
1186
1187    // FEED table
1188    feedtab = mskeys.asTable( "FEED" ) ;
1189  }
1190  void attachMain()
1191  {
1192    TableRecord &r = row.record() ;
1193    dataDescIdRF.attachToRecord( r, "DATA_DESC_ID" ) ;
1194    timeRF.attachToRecord( r, "TIME" ) ;
1195    timeCentroidRF.attachToRecord( r, "TIME_CENTROID" ) ;
1196    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1197    exposureRF.attachToRecord( r, "EXPOSURE" ) ;
1198    fieldIdRF.attachToRecord( r, "FIELD_ID" ) ;
1199    feed1RF.attachToRecord( r, "FEED1" ) ;
1200    feed2RF.attachToRecord( r, "FEED2" ) ;
1201    scanNumberRF.attachToRecord( r, "SCAN_NUMBER" ) ;
1202    stateIdRF.attachToRecord( r, "STATE_ID" ) ;
1203
1204    // constant values
1205    Int id = 0 ;
1206    RecordFieldPtr<Int> intRF( r, "OBSERVATION_ID" ) ;
1207    *intRF = 0 ;
1208    intRF.attachToRecord( r, "ANTENNA1" ) ;
1209    *intRF = 0 ;
1210    intRF.attachToRecord( r, "ANTENNA2" ) ;
1211    *intRF = 0 ;
1212    intRF.attachToRecord( r, "ARRAY_ID" ) ;
1213    *intRF = 0 ;
1214    intRF.attachToRecord( r, "PROCESSOR_ID" ) ;
1215    *intRF = 0 ;
1216    RecordFieldPtr< Vector<Double> > arrayRF( r, "UVW" ) ;
1217    arrayRF.define( Vector<Double>( 3, 0.0 ) ) ;
1218  }
1219  void attachPointing()
1220  {
1221    porow = TableRow( potab ) ;
1222    TableRecord &r = porow.record() ;
1223    poNumPolyRF.attachToRecord( r, "NUM_POLY" ) ;
1224    poTimeRF.attachToRecord( r, "TIME" ) ;
1225    poTimeOriginRF.attachToRecord( r, "TIME_ORIGIN" ) ;
1226    poIntervalRF.attachToRecord( r, "INTERVAL" ) ;
1227    poNameRF.attachToRecord( r, "NAME" ) ;
1228    poDirectionRF.attachToRecord( r, "DIRECTION" ) ;
1229    poTargetRF.attachToRecord( r, "TARGET" ) ;
1230   
1231    // constant values
1232    RecordFieldPtr<Int> antIdRF( r, "ANTENNA_ID" ) ;
1233    *antIdRF = 0 ;
1234    RecordFieldPtr<Bool> trackingRF( r, "TRACKING" ) ;
1235    *trackingRF = True ;
1236  }
1237  void queryType( Int type, String &stype, Bool &b, Double &t, Double &l )
1238  {
1239    t = 0.0 ;
1240    l = 0.0 ;
1241
1242    String sep1="#" ;
1243    String sep2="," ;
1244    String target="OBSERVE_TARGET" ;
1245    String atmcal="CALIBRATE_TEMPERATURE" ;
1246    String onstr="ON_SOURCE" ;
1247    String offstr="OFF_SOURCE" ;
1248    String pswitch="POSITION_SWITCH" ;
1249    String nod="NOD" ;
1250    String fswitch="FREQUENCY_SWITCH" ;
1251    String sigstr="SIG" ;
1252    String refstr="REF" ;
1253    String unspecified="UNSPECIFIED" ;
1254    String ftlow="LOWER" ;
1255    String fthigh="HIGHER" ;
1256    switch ( type ) {
1257    case SrcType::PSON:
1258      stype = target+sep1+onstr+sep2+pswitch ;
1259      b = True ;
1260      break ;
1261    case SrcType::PSOFF:
1262      stype = target+sep1+offstr+sep2+pswitch ;
1263      b = False ;
1264      break ;
1265    case SrcType::NOD:
1266      stype = target+sep1+onstr+sep2+nod ;
1267      b = True ;
1268      break ;
1269    case SrcType::FSON:
1270      stype = target+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1271      b = True ;
1272      break ;
1273    case SrcType::FSOFF:
1274      stype = target+sep1+onstr+sep2+fswitch+sep1+refstr ;
1275      b = False ;
1276      break ;
1277    case SrcType::SKY:
1278      stype = atmcal+sep1+offstr+sep2+unspecified ;
1279      b = False ;
1280      break ;
1281    case SrcType::HOT:
1282      stype = atmcal+sep1+offstr+sep2+unspecified ;
1283      b = False ;
1284      break ;
1285    case SrcType::WARM:
1286      stype = atmcal+sep1+offstr+sep2+unspecified ;
1287      b = False ;
1288      break ;
1289    case SrcType::COLD:
1290      stype = atmcal+sep1+offstr+sep2+unspecified ;
1291      b = False ;
1292      break ;
1293    case SrcType::PONCAL:
1294      stype = atmcal+sep1+onstr+sep2+pswitch ;
1295      b = True ;
1296      break ;
1297    case SrcType::POFFCAL:
1298      stype = atmcal+sep1+offstr+sep2+pswitch ;
1299      b = False ;
1300      break ;
1301    case SrcType::NODCAL:
1302      stype = atmcal+sep1+onstr+sep2+nod ;
1303      b = True ;
1304      break ;
1305    case SrcType::FONCAL:
1306      stype = atmcal+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1307      b = True ;
1308      break ;
1309    case SrcType::FOFFCAL:
1310      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+refstr ;
1311      b = False ;
1312      break ;
1313    case SrcType::FSLO:
1314      stype = target+sep1+onstr+sep2+fswitch+sep1+ftlow ;
1315      b = True ;
1316      break ;
1317    case SrcType::FLOOFF:
1318      stype = target+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1319      b = False ;
1320      break ;
1321    case SrcType::FLOSKY:
1322      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1323      b = False ;
1324      break ;
1325    case SrcType::FLOHOT:
1326      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1327      b = False ;
1328      break ;
1329    case SrcType::FLOWARM:
1330      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1331      b = False ;
1332      break ;
1333    case SrcType::FLOCOLD:
1334      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1335      b = False ;
1336      break ;
1337    case SrcType::FSHI:
1338      stype = target+sep1+onstr+sep2+fswitch+sep1+fthigh ;
1339      b = True ;
1340      break ;
1341    case SrcType::FHIOFF:
1342      stype = target+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1343      b = False ;
1344      break ;
1345    case SrcType::FHISKY:
1346      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1347      b = False ;
1348      break ;
1349    case SrcType::FHIHOT:
1350      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1351      b = False ;
1352      break ;
1353    case SrcType::FHIWARM:
1354      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1355      b = False ;
1356      break ;
1357    case SrcType::FHICOLD:
1358      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1359      b = False ;
1360      break ;
1361    case SrcType::SIG:
1362      stype = target+sep1+onstr+sep2+unspecified ;
1363      b = True ;
1364      break ;
1365    case SrcType::REF:
1366      stype = target+sep1+offstr+sep2+unspecified ;
1367      b = False ;
1368      break ;
1369    default:
1370      stype = unspecified ;
1371      b = True ;
1372      break ;
1373    }
1374  }
1375  void initCorrProductTemplate()
1376  {
1377    Int n = 1 ;
1378    {
1379      Matrix<Int> c( 2, n, 0 ) ;
1380      corrProductTemplate[n] = c ;
1381    }
1382    n = 2 ;
1383    {
1384      Matrix<Int> c( 2, n, 0 ) ;
1385      c.column( 1 ) = 1 ;
1386      corrProductTemplate[n] = c ;
1387    }
1388    n = 4 ;
1389    {
1390      Matrix<Int> c( 2, n, 0 ) ;
1391      c( 0, 2 ) = 1 ;
1392      c( 0, 3 ) = 1 ;
1393      c( 1, 1 ) = 1 ;
1394      c( 1, 3 ) = 1 ;
1395      corrProductTemplate[n] = c ;
1396    }
1397  }
1398
1399  Table &ms;
1400  TableRow row;
1401  uInt rowidx;
1402  String fieldName;
1403  Int fieldId;
1404  Int srcId;
1405  Int defaultFieldId;
1406  Int spwId;
1407  Int feedId;
1408  Int subscan;
1409  CountedPtr<DataHolder> holder;
1410  String ptName;
1411  Bool useFloat;
1412  String poltype;
1413
1414  // MS subtables
1415  Table spwtab;
1416  Table statetab;
1417  Table ddtab;
1418  Table poltab;
1419  Table fieldtab;
1420  Table feedtab;
1421  Table potab;
1422
1423  // Scantable MAIN columns
1424  ROArrayColumn<Float> spectraCol;
1425  ROArrayColumn<Double> directionCol,scanRateCol,sourceDirectionCol;
1426  ROArrayColumn<uChar> flagtraCol;
1427  ROTableColumn tcalIdCol,intervalCol,flagRowCol,timeCol,freqIdCol,
1428    sourceNameCol,fieldNameCol;
1429
1430  // MS MAIN columns
1431  RecordFieldPtr<Int> dataDescIdRF,fieldIdRF,feed1RF,feed2RF,
1432    scanNumberRF,stateIdRF;
1433  RecordFieldPtr<Double> timeRF,timeCentroidRF,intervalRF,exposureRF;
1434
1435  // MS POINTING columns
1436  TableRow porow;
1437  RecordFieldPtr<Int> poNumPolyRF ;
1438  RecordFieldPtr<Double> poTimeRF,
1439    poTimeOriginRF,
1440    poIntervalRF ;
1441  RecordFieldPtr<String> poNameRF ;
1442  RecordFieldPtr< Matrix<Double> > poDirectionRF,
1443    poTargetRF ;
1444
1445  Vector<String> stateEntry;
1446  Matrix<Int> ddEntry;
1447  Matrix<Int> feedEntry;
1448  vector< Vector<Int> > polEntry;
1449  map<uInt,Bool> processedFreqId;
1450  map<uInt,Double> refpix;
1451  map<uInt,Double> refval;
1452  map<uInt,Double> increment;
1453  MFrequency::Types freqframe;
1454  Record srcRec;
1455  map< Int, Matrix<Int> > corrProductTemplate;
1456};
1457
1458class BaseMSSysCalVisitor: public TableVisitor {
1459  uInt lastRecordNo;
1460  uInt lastBeamNo, lastIfNo, lastPolNo;
1461  Double lastTime;
1462protected:
1463  const Table &table;
1464  uInt count;
1465public:
1466  BaseMSSysCalVisitor(const Table &table)
1467    : table(table)
1468  {
1469    count = 0;
1470  }
1471 
1472  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) { }
1473  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) { }
1474  virtual void enterIfNo(const uInt recordNo, uInt columnValue) { }
1475  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) { }
1476  virtual void enterPolNo(const uInt recordNo, uInt columnValue) { }
1477  virtual void leavePolNo(const uInt recordNo, uInt columnValue) { }
1478  virtual void enterTime(const uInt recordNo, Double columnValue) { }
1479  virtual void leaveTime(const uInt recordNo, Double columnValue) { }
1480
1481  virtual Bool visitRecord(const uInt recordNo,
1482                           const uInt beamNo,
1483                           const uInt ifNo,
1484                           const uInt polNo,
1485                           const Double time) { return True ;}
1486
1487  virtual Bool visit(Bool isFirst, const uInt recordNo,
1488                     const uInt nCols, void const *const colValues[]) {
1489    uInt beamNo, ifNo, polNo;
1490    Double time;
1491    { // prologue
1492      uInt i = 0;
1493      {
1494        const uInt *col = (const uInt *)colValues[i++];
1495        beamNo = col[recordNo];
1496      }
1497      {
1498        const uInt *col = (const uInt *)colValues[i++];
1499        ifNo = col[recordNo];
1500      }
1501      {
1502        const Double *col = (const Double *)colValues[i++];
1503        time = col[recordNo];
1504      }
1505      {
1506        const uInt *col = (const uInt *)colValues[i++];
1507        polNo = col[recordNo];
1508      }
1509      assert(nCols == i);
1510    }
1511
1512    if (isFirst) {
1513      enterBeamNo(recordNo, beamNo);
1514      enterIfNo(recordNo, ifNo);
1515      enterTime(recordNo, time);
1516      enterPolNo(recordNo, polNo);
1517    } else {
1518      if (lastBeamNo != beamNo) {
1519        leavePolNo(lastRecordNo, lastPolNo);
1520        leaveTime(lastRecordNo, lastTime);
1521        leaveIfNo(lastRecordNo, lastIfNo);
1522        leaveBeamNo(lastRecordNo, lastBeamNo);
1523
1524        enterBeamNo(recordNo, beamNo);
1525        enterIfNo(recordNo, ifNo);
1526        enterTime(recordNo, time);
1527        enterPolNo(recordNo, polNo);
1528      } else if (lastIfNo != ifNo) {
1529        leavePolNo(lastRecordNo, lastPolNo);
1530        leaveTime(lastRecordNo, lastTime);
1531        leaveIfNo(lastRecordNo, lastIfNo);
1532       
1533        enterIfNo(recordNo, ifNo);
1534        enterTime(recordNo, time);
1535        enterPolNo(recordNo, polNo);
1536      } else if (lastTime != time) {
1537        leavePolNo(lastRecordNo, lastPolNo);
1538        leaveTime(lastRecordNo, lastTime);
1539
1540        enterTime(recordNo, time);
1541        enterPolNo(recordNo, polNo);
1542      } else if (lastPolNo != polNo) {
1543        leavePolNo(lastRecordNo, lastPolNo);
1544        enterPolNo(recordNo, polNo);
1545      }
1546    }
1547    count++;
1548    Bool result = visitRecord(recordNo, beamNo, ifNo, polNo, time);
1549
1550    { // epilogue
1551      lastRecordNo = recordNo;
1552
1553      lastBeamNo = beamNo;
1554      lastIfNo = ifNo;
1555      lastPolNo = polNo;
1556      lastTime = time;
1557    }
1558    return result ;
1559  }
1560
1561  virtual void finish() {
1562    if (count > 0) {
1563      leavePolNo(lastRecordNo, lastPolNo);
1564      leaveTime(lastRecordNo, lastTime);
1565      leaveIfNo(lastRecordNo, lastIfNo);
1566      leaveBeamNo(lastRecordNo, lastBeamNo);
1567    }
1568  }
1569};
1570
1571class BaseTsysHolder
1572{
1573public:
1574  BaseTsysHolder( ROArrayColumn<Float> &tsysCol )
1575    : col( tsysCol ),
1576      nchan(0)
1577  {
1578    reset() ;
1579  }
1580  virtual ~BaseTsysHolder() {}
1581  virtual Array<Float> getTsys() = 0 ;
1582  void setNchan( uInt n ) { nchan = n ; }
1583  void appendTsys( uInt row )
1584  {
1585    Vector<Float> v = col( row ) ;
1586    uInt len = tsys.nrow() ;
1587    tsys.resize( len+1, nchan, True ) ;
1588    if ( v.nelements() == nchan )
1589      tsys.row( len ) = v ;
1590    else
1591      tsys.row( len ) = v[0] ;
1592  }
1593  void setTsys( uInt row, uInt idx )
1594  {
1595    if ( idx >= nrow() )
1596      appendTsys( row ) ;
1597    else {
1598      Vector<Float> v = col( row ) ;
1599      if ( v.nelements() == nchan )
1600        tsys.row( idx ) = v ;
1601      else
1602        tsys.row( idx ) = v[0] ;
1603    }
1604  }
1605  void reset()
1606  {
1607    tsys.resize() ;
1608  }
1609  uInt nrow() { return tsys.nrow() ; }
1610  Bool isEffective()
1611  {
1612    return ( !(tsys.empty()) && anyNE( tsys, (Float)1.0 ) ) ;
1613  }
1614  BaseTsysHolder &operator= ( const BaseTsysHolder &v )
1615  {
1616    if ( this != &v )
1617      tsys.assign( v.tsys ) ;
1618    return *this ;
1619  }
1620protected:
1621  ROArrayColumn<Float> col ;
1622  Matrix<Float> tsys ;
1623  uInt nchan ;
1624};
1625
1626class TsysHolder : public BaseTsysHolder
1627{
1628public:
1629  TsysHolder( ROArrayColumn<Float> &tsysCol )
1630    : BaseTsysHolder( tsysCol )
1631  {}
1632  virtual ~TsysHolder() {}
1633  virtual Array<Float> getTsys()
1634  {
1635    return tsys.column( 0 ) ;
1636  }
1637};
1638
1639class TsysSpectrumHolder : public BaseTsysHolder
1640{
1641public:
1642  TsysSpectrumHolder( ROArrayColumn<Float> &tsysCol )
1643    : BaseTsysHolder( tsysCol )
1644  {}
1645  virtual ~TsysSpectrumHolder() {}
1646  virtual Array<Float> getTsys()
1647  {
1648    return tsys ;
1649  }
1650};
1651
1652class BaseTcalProcessor
1653{
1654public:
1655  BaseTcalProcessor( ROArrayColumn<Float> &tcalCol )
1656    : col( tcalCol )
1657  {}
1658  virtual ~BaseTcalProcessor() {}
1659  void setTcalId( Vector<uInt> &tcalId ) { id.assign( tcalId ) ; }
1660  virtual Array<Float> getTcal() = 0 ;
1661protected:
1662  ROArrayColumn<Float> col ;
1663  Vector<uInt> id ;
1664};
1665
1666class TcalProcessor : public BaseTcalProcessor
1667{
1668public:
1669  TcalProcessor( ROArrayColumn<Float> &tcalCol )
1670    : BaseTcalProcessor( tcalCol )
1671  {}
1672  virtual ~TcalProcessor() {}
1673  virtual Array<Float> getTcal()
1674  {
1675    uInt npol = id.nelements() ;
1676    Vector<Float> tcal( npol ) ;
1677    for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
1678      tcal[ipol] = col( id[ipol] ).data()[0] ;
1679    //cout << "TcalProcessor: tcal = " << tcal << endl ;
1680    return tcal ;
1681  }
1682};
1683
1684class TcalSpectrumProcessor : public BaseTcalProcessor
1685{
1686public:
1687  TcalSpectrumProcessor( ROArrayColumn<Float> &tcalCol )
1688    : BaseTcalProcessor( tcalCol )
1689  {}
1690  virtual ~TcalSpectrumProcessor() {}
1691  virtual Array<Float> getTcal()
1692  {
1693    uInt npol = id.nelements() ;
1694    Vector<Float> tcal0 = col( 0 ) ;
1695    uInt nchan = tcal0.nelements() ;
1696    Matrix<Float> tcal( npol, nchan ) ;
1697    tcal.row( 0 ) = tcal0 ;
1698    for ( uInt ipol = 1 ; ipol < npol ; ipol++ )
1699      tcal.row( ipol ) = col( id[ipol] ) ;
1700    return tcal ;
1701  }
1702};
1703
1704class MSSysCalVisitor : public BaseMSSysCalVisitor
1705{
1706public:
1707  MSSysCalVisitor( const Table &from, Table &to )
1708    : BaseMSSysCalVisitor( from ),
1709      sctab( to ),
1710      rowidx( 0 )
1711  {
1712    scrow = TableRow( sctab ) ;
1713
1714    lastTcalId.resize() ;
1715    theTcalId.resize() ;
1716    startTime = 0.0 ;
1717    endTime = 0.0 ;
1718
1719    const TableRecord &keys = table.keywordSet() ;
1720    Table tcalTable = keys.asTable( "TCAL" ) ;
1721    tcalCol.attach( tcalTable, "TCAL" ) ;
1722    tsysCol.attach( table, "TSYS" ) ;
1723    tcalIdCol.attach( table, "TCAL_ID" ) ;
1724    intervalCol.attach( table, "INTERVAL" ) ;
1725    effectiveTcal.resize( tcalTable.nrow() ) ;
1726    for ( uInt irow = 0 ; irow < tcalTable.nrow() ; irow++ ) {
1727      if ( allEQ( tcalCol( irow ), (Float)1.0 ) )
1728        effectiveTcal[irow] = False ;
1729      else
1730        effectiveTcal[irow] = True ;
1731    }
1732   
1733    TableRecord &r = scrow.record() ;
1734    RecordFieldPtr<Int> antennaIdRF( r, "ANTENNA_ID" ) ;
1735    *antennaIdRF = 0 ;
1736    feedIdRF.attachToRecord( r, "FEED_ID" ) ;
1737    specWinIdRF.attachToRecord( r, "SPECTRAL_WINDOW_ID" ) ;
1738    timeRF.attachToRecord( r, "TIME" ) ;
1739    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1740    if ( r.isDefined( "TCAL" ) ) {
1741      tcalRF.attachToRecord( r, "TCAL" ) ;
1742      tcalProcessor = new TcalProcessor( tcalCol ) ;
1743    }
1744    else if ( r.isDefined( "TCAL_SPECTRUM" ) ) {
1745      tcalRF.attachToRecord( r, "TCAL_SPECTRUM" ) ;
1746      tcalProcessor = new TcalSpectrumProcessor( tcalCol ) ;
1747    }
1748    if ( r.isDefined( "TSYS" ) ) {
1749      tsysRF.attachToRecord( r, "TSYS" ) ;
1750      theTsys = new TsysHolder( tsysCol ) ;
1751      lastTsys = new TsysHolder( tsysCol ) ;
1752    }
1753    else {
1754      tsysRF.attachToRecord( r, "TSYS_SPECTRUM" ) ;
1755      theTsys = new TsysSpectrumHolder( tsysCol ) ;
1756      lastTsys = new TsysSpectrumHolder( tsysCol ) ;
1757    }
1758
1759  }
1760
1761  virtual void enterBeamNo(const uInt recordNo, uInt columnValue)
1762  {
1763    *feedIdRF = (Int)columnValue ;
1764  }
1765  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue)
1766  {
1767  }
1768  virtual void enterIfNo(const uInt recordNo, uInt columnValue)
1769  {
1770    //cout << "enterIfNo" << endl ;
1771    ROArrayColumn<Float> sp( table, "SPECTRA" ) ;
1772    uInt nchan = sp( recordNo ).nelements() ;
1773    theTsys->setNchan( nchan ) ;
1774    lastTsys->setNchan( nchan ) ;
1775
1776    *specWinIdRF = (Int)columnValue ;
1777  }
1778  virtual void leaveIfNo(const uInt recordNo, uInt columnValue)
1779  {
1780    //cout << "leaveIfNo" << endl ;
1781    post() ;
1782    lastTsys->reset() ;
1783    lastTcalId.resize() ;
1784    theTsys->reset() ;
1785    theTcalId.resize() ;
1786    startTime = 0.0 ;
1787    endTime = 0.0 ;
1788  }
1789  virtual void enterTime(const uInt recordNo, Double columnValue)
1790  {
1791    //cout << "enterTime" << endl ;
1792    interval = intervalCol.asdouble( recordNo ) ;
1793    // start time and end time
1794    if ( startTime == 0.0 ) {
1795      startTime = columnValue * 86400.0 - 0.5 * interval ;
1796      endTime = columnValue * 86400.0 + 0.5 * interval ;
1797    }
1798  }
1799  virtual void leaveTime(const uInt recordNo, Double columnValue)
1800  {
1801    //cout << "leaveTime" << endl ;
1802    if ( isUpdated() ) {
1803      post() ;
1804      *lastTsys = *theTsys ;
1805      lastTcalId = theTcalId ;
1806      theTsys->reset() ;
1807      theTcalId.resize() ;
1808      startTime = columnValue * 86400.0 - 0.5 * interval ;
1809      endTime = columnValue * 86400.0 + 0.5 * interval ;
1810    }
1811    else {
1812      endTime = columnValue * 86400.0 + 0.5 * interval ;
1813    }
1814  }
1815  virtual void enterPolNo(const uInt recordNo, uInt columnValue)
1816  {
1817    //cout << "enterPolNo" << endl ;
1818    Vector<Float> tsys = tsysCol( recordNo ) ;
1819    uInt tcalId = tcalIdCol.asuInt( recordNo ) ;
1820    // lastTsys.nrow() must be npol
1821    if ( lastTsys->nrow() == columnValue )
1822      lastTsys->appendTsys( recordNo ) ;
1823    // lastTcalId.nelements() must be npol
1824    if ( lastTcalId.nelements() == columnValue )
1825      appendTcalId( lastTcalId, tcalId, columnValue ) ;
1826    // theTsys.nrow() must be npol
1827    if ( theTsys->nrow() == columnValue )
1828      theTsys->appendTsys( recordNo ) ;
1829    else {
1830      theTsys->setTsys( recordNo, columnValue ) ;
1831    }
1832    if ( theTcalId.nelements() == columnValue )
1833      appendTcalId( theTcalId, tcalId, columnValue ) ;
1834    else
1835      setTcalId( theTcalId, tcalId, columnValue ) ;
1836  }
1837  virtual void leavePolNo( const uInt recordNo, uInt columnValue )
1838  {
1839  }
1840   
1841private:
1842  void appendTcalId( Vector<uInt> &v, uInt &elem, uInt &polId )
1843  {
1844    v.resize( polId+1, True ) ;
1845    v[polId] = elem ;
1846  }
1847  void setTcalId( Vector<uInt> &v, uInt &elem, uInt &polId )
1848  {
1849    v[polId] = elem ;
1850  }
1851  void post()
1852  {
1853    // check if given Tcal and Tsys is effective
1854    Bool isEffective = False ;
1855    for ( uInt ipol = 0 ; ipol < lastTcalId.nelements() ; ipol++ ) {
1856      if ( effectiveTcal[lastTcalId[ipol]] ) {
1857        isEffective = True ;
1858        break ;
1859      }
1860    }
1861    if ( !isEffective ) {
1862      if ( !(lastTsys->isEffective()) )
1863        return ;
1864    }
1865
1866    //cout << " interval: " << (endTime-startTime) << " lastTcalId = " << lastTcalId << endl ;
1867    Double midTime = 0.5 * ( startTime + endTime ) ;
1868    Double interval = endTime - startTime ;
1869    *timeRF = midTime ;
1870    *intervalRF = interval ;
1871    tcalProcessor->setTcalId( lastTcalId ) ;
1872    Array<Float> tcal = tcalProcessor->getTcal() ;
1873    tcalRF.define( tcal ) ;
1874    tsysRF.define( lastTsys->getTsys() ) ;
1875    sctab.addRow( 1, True ) ;
1876    scrow.put( rowidx ) ;
1877    rowidx++ ;
1878  }
1879 
1880  Bool isUpdated()
1881  {
1882    Bool ret = False ;
1883    ret = anyNE( theTcalId, lastTcalId ) ;
1884    if ( !ret )
1885      ret = anyNE( theTsys->getTsys(), lastTsys->getTsys() ) ;
1886    return ret ;
1887  }
1888
1889  Table &sctab;
1890  TableRow scrow;
1891  uInt rowidx;
1892
1893  Double startTime,endTime,interval;
1894 
1895  CountedPtr<BaseTsysHolder> lastTsys,theTsys;
1896  Vector<uInt> lastTcalId,theTcalId;
1897  CountedPtr<BaseTcalProcessor> tcalProcessor ;
1898  Vector<Bool> effectiveTcal;
1899
1900  RecordFieldPtr<Int> feedIdRF,specWinIdRF;
1901  RecordFieldPtr<Double> timeRF,intervalRF;
1902  RecordFieldPtr< Array<Float> > tcalRF,tsysRF;
1903
1904  ROArrayColumn<Float> tsysCol,tcalCol;
1905  ROTableColumn tcalIdCol,intervalCol;
1906};
1907
1908MSWriter::MSWriter(CountedPtr<Scantable> stable)
1909  : table_(stable),
1910    isWeather_(False),
1911    tcalSpec_(False),
1912    tsysSpec_(False),
1913    ptTabName_("")
1914{
1915  os_ = LogIO() ;
1916  os_.origin( LogOrigin( "MSWriter", "MSWriter()", WHERE ) ) ;
1917//   os_ << "MSWriter::MSWriter()" << LogIO::POST ;
1918
1919  // initialize writer
1920  init() ;
1921}
1922
1923MSWriter::~MSWriter()
1924{
1925  os_.origin( LogOrigin( "MSWriter", "~MSWriter()", WHERE ) ) ;
1926//   os_ << "MSWriter::~MSWriter()" << LogIO::POST ;
1927
1928  if ( mstable_ != 0 )
1929    delete mstable_ ;
1930}
1931
1932bool MSWriter::write(const string& filename, const Record& rec)
1933{
1934  os_.origin( LogOrigin( "MSWriter", "write()", WHERE ) ) ;
1935  //double startSec = mathutil::gettimeofday_sec() ;
1936  //os_ << "start MSWriter::write() startSec=" << startSec << LogIO::POST ;
1937
1938  filename_ = filename ;
1939
1940  // parsing MS options
1941  Bool overwrite = False ;
1942  if ( rec.isDefined( "ms" ) ) {
1943    Record msrec = rec.asRecord( "ms" ) ;
1944    if ( msrec.isDefined( "overwrite" ) ) {
1945      overwrite = msrec.asBool( "overwrite" ) ;
1946    }
1947  }
1948
1949  os_ << "Parsing MS options" << endl ;
1950  os_ << "   overwrite = " << overwrite << LogIO::POST ;
1951
1952  File file( filename_ ) ;
1953  if ( file.exists() ) {
1954    if ( overwrite ) {
1955      os_ << filename_ << " exists. Overwrite existing data... " << LogIO::POST ;
1956      if ( file.isRegular() ) RegularFile(file).remove() ;
1957      else if ( file.isDirectory() ) Directory(file).removeRecursive() ;
1958      else SymLink(file).remove() ;
1959    }
1960    else {
1961      os_ << LogIO::SEVERE << "ERROR: " << filename_ << " exists..." << LogIO::POST ;
1962      return False ;
1963    }
1964  }
1965
1966  // set up MS
1967  setupMS() ;
1968 
1969  // subtables
1970  // OBSERVATION
1971  fillObservation() ;
1972
1973  // ANTENNA
1974  fillAntenna() ;
1975
1976  // PROCESSOR
1977  fillProcessor() ;
1978
1979  // SOURCE
1980  fillSource() ;
1981
1982  // WEATHER
1983  if ( isWeather_ )
1984    fillWeather() ;
1985
1986  // SYSCAL
1987  fillSysCal() ;
1988
1989  /***
1990   * Start iteration using TableVisitor
1991   ***/
1992  {
1993    static const char *cols[] = {
1994      "FIELDNAME", "BEAMNO", "SCANNO", "IFNO", "SRCTYPE", "CYCLENO", "TIME",
1995      "POLNO",
1996      NULL
1997    };
1998    static const TypeManagerImpl<uInt> tmUInt;
1999    static const TypeManagerImpl<Int> tmInt;
2000    static const TypeManagerImpl<Double> tmDouble;
2001    static const TypeManagerImpl<String> tmString;
2002    static const TypeManager *const tms[] = {
2003      &tmString, &tmUInt, &tmUInt, &tmUInt, &tmInt, &tmUInt, &tmDouble, &tmUInt, NULL
2004    };
2005    //double t0 = mathutil::gettimeofday_sec() ;
2006    MSWriterVisitor myVisitor(table_->table(),*mstable_);
2007    //double t1 = mathutil::gettimeofday_sec() ;
2008    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2009    String dataColName = "FLOAT_DATA" ;
2010    if ( useData_ )
2011      dataColName = "DATA" ;
2012    myVisitor.dataColumnName( dataColName ) ;
2013    myVisitor.pointingTableName( ptTabName_ ) ;
2014    myVisitor.setSourceRecord( srcRec_ ) ;
2015    //double t2 = mathutil::gettimeofday_sec() ;
2016    traverseTable(table_->table(), cols, tms, &myVisitor);
2017    //double t3 = mathutil::gettimeofday_sec() ;
2018    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2019  }
2020  /***
2021   * End iteration using TableVisitor
2022   ***/
2023
2024  // ASDM tables
2025  const TableRecord &stKeys = table_->table().keywordSet() ;
2026  TableRecord &msKeys = mstable_->rwKeywordSet() ;
2027  uInt nfields = stKeys.nfields() ;
2028  for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) {
2029    String kname = stKeys.name( ifield ) ;
2030    if ( kname.find( "ASDM" ) != String::npos ) {
2031      String asdmpath = stKeys.asString( ifield ) ;
2032      os_ << "found ASDM table: " << asdmpath << LogIO::POST ;
2033      if ( Table::isReadable( asdmpath ) ) {
2034        Table newAsdmTab( asdmpath, Table::Old ) ;
2035        newAsdmTab.copy( filename_+"/"+kname, Table::New ) ;
2036        os_ << "add subtable: " << kname << LogIO::POST ;
2037        msKeys.defineTable( kname, Table( filename_+"/"+kname, Table::Old ) ) ;
2038      }
2039    }
2040  }
2041
2042  // replace POINTING table with original one if exists
2043  if ( ptTabName_ != "" ) {
2044    delete mstable_ ;
2045    mstable_ = 0 ;
2046    Table newPtTab( ptTabName_, Table::Old ) ;
2047    newPtTab.copy( filename_+"/POINTING", Table::New ) ;
2048  }
2049
2050  //double endSec = mathutil::gettimeofday_sec() ;
2051  //os_ << "end MSWriter::write() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2052
2053  return True ;
2054}
2055
2056void MSWriter::init()
2057{
2058//   os_.origin( LogOrigin( "MSWriter", "init()", WHERE ) ) ;
2059//   double startSec = mathutil::gettimeofday_sec() ;
2060//   os_ << "start MSWriter::init() startSec=" << startSec << LogIO::POST ;
2061 
2062  // access to scantable
2063  header_ = table_->getHeader() ;
2064
2065  // FLOAT_DATA? or DATA?
2066  if ( header_.npol > 2 ) {
2067    useFloatData_ = False ;
2068    useData_ = True ;
2069  }
2070  else {
2071    useFloatData_ = True ;
2072    useData_ = False ;
2073  }
2074
2075  // polarization type
2076  polType_ = header_.poltype ;
2077  if ( polType_ == "" )
2078    polType_ = "stokes" ;
2079  else if ( polType_.find( "linear" ) != String::npos )
2080    polType_ = "linear" ;
2081  else if ( polType_.find( "circular" ) != String::npos )
2082    polType_ = "circular" ;
2083  else if ( polType_.find( "stokes" ) != String::npos )
2084    polType_ = "stokes" ;
2085  else if ( polType_.find( "linpol" ) != String::npos )
2086    polType_ = "linpol" ;
2087  else
2088    polType_ = "notype" ;
2089
2090  // Check if some subtables are exists
2091  Bool isTcal = False ;
2092  if ( table_->tcal().table().nrow() != 0 ) {
2093    ROTableColumn col( table_->tcal().table(), "TCAL" ) ;
2094    if ( col.isDefined( 0 ) ) {
2095      os_ << "TCAL table exists: nrow=" << table_->tcal().table().nrow() << LogIO::POST ;
2096      isTcal = True ;
2097    }
2098    else {
2099      os_ << "No TCAL rows" << LogIO::POST ;
2100    }
2101  }
2102  else {
2103    os_ << "No TCAL rows" << LogIO::POST ;
2104  }
2105  if ( table_->weather().table().nrow() != 0 ) {
2106    ROTableColumn col( table_->weather().table(), "TEMPERATURE" ) ;
2107    if ( col.isDefined( 0 ) ) {
2108      os_ << "WEATHER table exists: nrow=" << table_->weather().table().nrow() << LogIO::POST ;
2109      isWeather_ =True ;
2110    }
2111    else {
2112      os_ << "No WEATHER rows" << LogIO::POST ;
2113    }
2114  }
2115  else {
2116    os_ << "No WEATHER rows" << LogIO::POST ;
2117  }
2118
2119  // Are TCAL_SPECTRUM and TSYS_SPECTRUM necessary?
2120  if ( header_.nchan != 1 ) {
2121    if ( isTcal ) {
2122      // examine TCAL subtable
2123      Table tcaltab = table_->tcal().table() ;
2124      ROArrayColumn<Float> tcalCol( tcaltab, "TCAL" ) ;
2125      for ( uInt irow = 0 ; irow < tcaltab.nrow() ; irow++ ) {
2126        if ( tcalCol( irow ).size() != 1 )
2127          tcalSpec_ = True ;
2128      }
2129    }
2130    // examine spectral data
2131    TableIterator iter0( table_->table(), "IFNO" ) ;
2132    while( !iter0.pastEnd() ) {
2133      Table t0( iter0.table() ) ;
2134      ROArrayColumn<Float> sharedFloatArrCol( t0, "SPECTRA" ) ;
2135      uInt len = sharedFloatArrCol( 0 ).size() ;
2136      if ( len != 1 ) {
2137        sharedFloatArrCol.attach( t0, "TSYS" ) ;
2138        if ( sharedFloatArrCol( 0 ).size() != 1 )
2139          tsysSpec_ = True ;
2140      }
2141      iter0.next() ;
2142    }
2143  }
2144
2145  // check if reference for POINTING table exists
2146  const TableRecord &rec = table_->table().keywordSet() ;
2147  if ( rec.isDefined( "POINTING" ) ) {
2148    ptTabName_ = rec.asString( "POINTING" ) ;
2149    if ( !Table::isReadable( ptTabName_ ) ) {
2150      ptTabName_ = "" ;
2151    }
2152  }
2153
2154//   double endSec = mathutil::gettimeofday_sec() ;
2155//   os_ << "end MSWriter::init() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2156}
2157
2158void MSWriter::setupMS()
2159{
2160//   os_.origin( LogOrigin( "MSWriter", "setupMS()", WHERE ) ) ;
2161//   double startSec = mathutil::gettimeofday_sec() ;
2162//   os_ << "start MSWriter::setupMS() startSec=" << startSec << LogIO::POST ;
2163 
2164  String dunit = table_->getHeader().fluxunit ;
2165
2166  TableDesc msDesc = MeasurementSet::requiredTableDesc() ;
2167  if ( useFloatData_ )
2168    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::FLOAT_DATA, 2 ) ;
2169  else if ( useData_ )
2170    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::DATA, 2 ) ;
2171
2172  SetupNewTable newtab( filename_, msDesc, Table::New ) ;
2173
2174  mstable_ = new MeasurementSet( newtab ) ;
2175
2176  TableColumn col ;
2177  if ( useFloatData_ )
2178    col.attach( *mstable_, "FLOAT_DATA" ) ;
2179  else if ( useData_ )
2180    col.attach( *mstable_, "DATA" ) ;
2181  col.rwKeywordSet().define( "UNIT", dunit ) ;
2182
2183  // create subtables
2184  TableDesc antennaDesc = MSAntenna::requiredTableDesc() ;
2185  SetupNewTable antennaTab( mstable_->antennaTableName(), antennaDesc, Table::New ) ;
2186  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::ANTENNA ), Table( antennaTab ) ) ;
2187
2188  TableDesc dataDescDesc = MSDataDescription::requiredTableDesc() ;
2189  SetupNewTable dataDescTab( mstable_->dataDescriptionTableName(), dataDescDesc, Table::New ) ;
2190  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DATA_DESCRIPTION ), Table( dataDescTab ) ) ;
2191
2192  TableDesc dopplerDesc = MSDoppler::requiredTableDesc() ;
2193  SetupNewTable dopplerTab( mstable_->dopplerTableName(), dopplerDesc, Table::New ) ;
2194  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DOPPLER ), Table( dopplerTab ) ) ;
2195
2196  TableDesc feedDesc = MSFeed::requiredTableDesc() ;
2197  SetupNewTable feedTab( mstable_->feedTableName(), feedDesc, Table::New ) ;
2198  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FEED ), Table( feedTab ) ) ;
2199
2200  TableDesc fieldDesc = MSField::requiredTableDesc() ;
2201  SetupNewTable fieldTab( mstable_->fieldTableName(), fieldDesc, Table::New ) ;
2202  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FIELD ), Table( fieldTab ) ) ;
2203
2204  TableDesc flagCmdDesc = MSFlagCmd::requiredTableDesc() ;
2205  SetupNewTable flagCmdTab( mstable_->flagCmdTableName(), flagCmdDesc, Table::New ) ;
2206  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FLAG_CMD ), Table( flagCmdTab ) ) ;
2207
2208  TableDesc freqOffsetDesc = MSFreqOffset::requiredTableDesc() ;
2209  SetupNewTable freqOffsetTab( mstable_->freqOffsetTableName(), freqOffsetDesc, Table::New ) ;
2210  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FREQ_OFFSET ), Table( freqOffsetTab ) ) ;
2211
2212  TableDesc historyDesc = MSHistory::requiredTableDesc() ;
2213  SetupNewTable historyTab( mstable_->historyTableName(), historyDesc, Table::New ) ;
2214  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::HISTORY ), Table( historyTab ) ) ;
2215
2216  TableDesc observationDesc = MSObservation::requiredTableDesc() ;
2217  SetupNewTable observationTab( mstable_->observationTableName(), observationDesc, Table::New ) ;
2218  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::OBSERVATION ), Table( observationTab ) ) ;
2219
2220  TableDesc pointingDesc = MSPointing::requiredTableDesc() ;
2221  SetupNewTable pointingTab( mstable_->pointingTableName(), pointingDesc, Table::New ) ;
2222  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POINTING ), Table( pointingTab ) ) ;
2223
2224  TableDesc polarizationDesc = MSPolarization::requiredTableDesc() ;
2225  SetupNewTable polarizationTab( mstable_->polarizationTableName(), polarizationDesc, Table::New ) ;
2226  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POLARIZATION ), Table( polarizationTab ) ) ;
2227
2228  TableDesc processorDesc = MSProcessor::requiredTableDesc() ;
2229  SetupNewTable processorTab( mstable_->processorTableName(), processorDesc, Table::New ) ;
2230  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::PROCESSOR ), Table( processorTab ) ) ;
2231
2232  TableDesc sourceDesc = MSSource::requiredTableDesc() ;
2233  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::TRANSITION, 1 ) ;
2234  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::REST_FREQUENCY, 1 ) ;
2235  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::SYSVEL, 1 ) ;
2236  SetupNewTable sourceTab( mstable_->sourceTableName(), sourceDesc, Table::New ) ;
2237  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SOURCE ), Table( sourceTab ) ) ;
2238
2239  TableDesc spwDesc = MSSpectralWindow::requiredTableDesc() ;
2240  SetupNewTable spwTab( mstable_->spectralWindowTableName(), spwDesc, Table::New ) ;
2241  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SPECTRAL_WINDOW ), Table( spwTab ) ) ;
2242
2243  TableDesc stateDesc = MSState::requiredTableDesc() ;
2244  SetupNewTable stateTab( mstable_->stateTableName(), stateDesc, Table::New ) ;
2245  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::STATE ), Table( stateTab ) ) ;
2246
2247  TableDesc sysCalDesc = MSSysCal::requiredTableDesc() ;
2248  if ( tcalSpec_ )
2249    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL_SPECTRUM, 2 ) ;
2250  else
2251    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL, 1 ) ;
2252  if ( tsysSpec_ )
2253    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS_SPECTRUM, 2 ) ;
2254  else
2255    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS, 1 ) ;
2256  SetupNewTable sysCalTab( mstable_->sysCalTableName(), sysCalDesc, Table::New ) ;
2257  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SYSCAL ), Table( sysCalTab ) ) ;
2258
2259  TableDesc weatherDesc = MSWeather::requiredTableDesc() ;
2260  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::TEMPERATURE ) ;
2261  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::PRESSURE ) ;
2262  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::REL_HUMIDITY ) ;
2263  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_SPEED ) ;
2264  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_DIRECTION ) ;
2265  SetupNewTable weatherTab( mstable_->weatherTableName(), weatherDesc, Table::New ) ;
2266  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::WEATHER ), Table( weatherTab ) ) ;
2267
2268  mstable_->initRefs() ;
2269
2270//   double endSec = mathutil::gettimeofday_sec() ;
2271//   os_ << "end MSWriter::setupMS() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2272}
2273
2274void MSWriter::fillObservation()
2275{
2276  //double startSec = mathutil::gettimeofday_sec() ;
2277  //os_ << "start MSWriter::fillObservation() startSec=" << startSec << LogIO::POST ;
2278
2279  // only 1 row
2280  mstable_->observation().addRow( 1, True ) ;
2281  MSObservationColumns msObsCols( mstable_->observation() ) ;
2282  msObsCols.observer().put( 0, header_.observer ) ;
2283  // tentatively put antennaname (from ANTENNA subtable)
2284  String hAntennaName = header_.antennaname ;
2285  String::size_type pos = hAntennaName.find( "//" ) ;
2286  String telescopeName ;
2287  if ( pos != String::npos ) {
2288    telescopeName = hAntennaName.substr( 0, pos ) ;
2289  }
2290  else {
2291    pos = hAntennaName.find( "@" ) ;
2292    telescopeName = hAntennaName.substr( 0, pos ) ;
2293  }
2294//   os_ << "telescopeName = " << telescopeName << LogIO::POST ;
2295  msObsCols.telescopeName().put( 0, telescopeName ) ;
2296  msObsCols.project().put( 0, header_.project ) ;
2297  //ScalarMeasColumn<MEpoch> timeCol( table_->table().sort("TIME"), "TIME" ) ;
2298  Table sortedtable = table_->table().sort("TIME") ;
2299  ScalarMeasColumn<MEpoch> timeCol( sortedtable, "TIME" ) ;
2300  Vector<MEpoch> trange( 2 ) ;
2301  trange[0] = timeCol( 0 ) ;
2302  trange[1] = timeCol( table_->nrow()-1 ) ;
2303  msObsCols.timeRangeMeas().put( 0, trange ) ;
2304
2305  //double endSec = mathutil::gettimeofday_sec() ;
2306  //os_ << "end MSWriter::fillObservation() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2307}
2308
2309void MSWriter::antennaProperty( String &name, String &m, String &t, Double &d )
2310{
2311  name.upcase() ;
2312 
2313  m = "ALT-AZ" ;
2314  t = "GROUND-BASED" ;
2315  if ( name.matches( Regex( "DV[0-9]+$" ) )
2316       || name.matches( Regex( "DA[0-9]+$" ) )
2317       || name.matches( Regex( "PM[0-9]+$" ) ) )
2318    d = 12.0 ;
2319  else if ( name.matches( Regex( "CM[0-9]+$" ) ) )
2320    d = 7.0 ;
2321  else if ( name.contains( "GBT" ) )
2322    d = 104.9 ;
2323  else if ( name.contains( "MOPRA" ) )
2324    d = 22.0 ;
2325  else if ( name.contains( "PKS" ) || name.contains( "PARKS" ) )
2326    d = 64.0 ;
2327  else if ( name.contains( "TIDBINBILLA" ) )
2328    d = 70.0 ;
2329  else if ( name.contains( "CEDUNA" ) )
2330    d = 30.0 ;
2331  else if ( name.contains( "HOBART" ) )
2332    d = 26.0 ;
2333  else if ( name.contains( "APEX" ) )
2334    d = 12.0 ;
2335  else if ( name.contains( "ASTE" ) )
2336    d = 10.0 ;
2337  else if ( name.contains( "NRO" ) )
2338    d = 45.0 ;
2339  else
2340    d = 1.0 ;
2341}
2342
2343void MSWriter::fillAntenna()
2344{
2345  //double startSec = mathutil::gettimeofday_sec() ;
2346  //os_ << "start MSWriter::fillAntenna() startSec=" << startSec << LogIO::POST ;
2347
2348  // only 1 row
2349  Table anttab = mstable_->antenna() ;
2350  anttab.addRow( 1, True ) ;
2351 
2352  Table &table = table_->table() ;
2353  const TableRecord &keys = table.keywordSet() ;
2354  String hAntName = keys.asString( "AntennaName" ) ;
2355  String::size_type pos = hAntName.find( "//" ) ;
2356  String antennaName ;
2357  String stationName ;
2358  if ( pos != String::npos ) {
2359    stationName = hAntName.substr( 0, pos ) ;
2360    hAntName = hAntName.substr( pos+2 ) ;
2361  }
2362  pos = hAntName.find( "@" ) ;
2363  if ( pos != String::npos ) {
2364    antennaName = hAntName.substr( 0, pos ) ;
2365    stationName = hAntName.substr( pos+1 ) ;
2366  }
2367  else {
2368    antennaName = hAntName ;
2369  }
2370  Vector<Double> antpos = keys.asArrayDouble( "AntennaPosition" ) ;
2371 
2372  String mount, atype ;
2373  Double diameter ;
2374  antennaProperty( antennaName, mount, atype, diameter ) ;
2375 
2376  TableRow tr( anttab ) ;
2377  TableRecord &r = tr.record() ;
2378  RecordFieldPtr<String> nameRF( r, "NAME" ) ;
2379  RecordFieldPtr<String> stationRF( r, "STATION" ) ;
2380  RecordFieldPtr<String> mountRF( r, "MOUNT" ) ;
2381  RecordFieldPtr<String> typeRF( r, "TYPE" ) ;
2382  RecordFieldPtr<Double> dishDiameterRF( r, "DISH_DIAMETER" ) ;
2383  RecordFieldPtr< Vector<Double> > positionRF( r, "POSITION" ) ;
2384  *nameRF = antennaName ;
2385  *mountRF = mount ;
2386  *typeRF = atype ;
2387  *dishDiameterRF = diameter ;
2388  *positionRF = antpos ;
2389  *stationRF = stationName ;
2390 
2391  tr.put( 0 ) ;
2392
2393  //double endSec = mathutil::gettimeofday_sec() ;
2394  //os_ << "end MSWriter::fillAntenna() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2395}
2396 
2397void MSWriter::fillProcessor()
2398{
2399//   double startSec = mathutil::gettimeofday_sec() ;
2400//   os_ << "start MSWriter::fillProcessor() startSec=" << startSec << LogIO::POST ;
2401 
2402  // only add empty 1 row
2403  MSProcessor msProc = mstable_->processor() ;
2404  msProc.addRow( 1, True ) ;
2405
2406//   double endSec = mathutil::gettimeofday_sec() ;
2407//   os_ << "end MSWriter::fillProcessor() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2408}
2409
2410void MSWriter::fillSource()
2411{
2412//   double startSec = mathutil::gettimeofday_sec() ;
2413//   os_ << "start MSWriter::fillSource() startSec=" << startSec << LogIO::POST ;
2414 
2415  // access to MS SOURCE subtable
2416  MSSource msSrc = mstable_->source() ;
2417
2418  // access to MOLECULE subtable
2419  STMolecules stm = table_->molecules() ;
2420
2421  Int srcId = 0 ;
2422  Vector<Double> restFreq ;
2423  Vector<String> molName ;
2424  Vector<String> fMolName ;
2425
2426  // row based
2427  TableRow row( msSrc ) ;
2428  TableRecord &rec = row.record() ;
2429  RecordFieldPtr<Int> srcidRF( rec, "SOURCE_ID" ) ;
2430  RecordFieldPtr<String> nameRF( rec, "NAME" ) ;
2431  RecordFieldPtr< Array<Double> > srcpmRF( rec, "PROPER_MOTION" ) ;
2432  RecordFieldPtr< Array<Double> > srcdirRF( rec, "DIRECTION" ) ;
2433  RecordFieldPtr<Int> numlineRF( rec, "NUM_LINES" ) ;
2434  RecordFieldPtr< Array<Double> > restfreqRF( rec, "REST_FREQUENCY" ) ;
2435  RecordFieldPtr< Array<Double> > sysvelRF( rec, "SYSVEL" ) ;
2436  RecordFieldPtr< Array<String> > transitionRF( rec, "TRANSITION" ) ;
2437  RecordFieldPtr<Double> timeRF( rec, "TIME" ) ;
2438  RecordFieldPtr<Double> intervalRF( rec, "INTERVAL" ) ;
2439  RecordFieldPtr<Int> spwidRF( rec, "SPECTRAL_WINDOW_ID" ) ;
2440
2441  //
2442  // ITERATION: SRCNAME
2443  //
2444  TableIterator iter0( table_->table(), "SRCNAME" ) ;
2445  while( !iter0.pastEnd() ) {
2446    //Table t0( iter0.table() ) ;
2447    Table t0 =  iter0.table()  ;
2448
2449    // get necessary information
2450    ROScalarColumn<String> srcNameCol( t0, "SRCNAME" ) ;
2451    String srcName = srcNameCol( 0 ) ;
2452    ROArrayColumn<Double> sharedDArrRCol( t0, "SRCPROPERMOTION" ) ;
2453    Vector<Double> srcPM = sharedDArrRCol( 0 ) ;
2454    sharedDArrRCol.attach( t0, "SRCDIRECTION" ) ;
2455    Vector<Double> srcDir = sharedDArrRCol( 0 ) ;
2456    ROScalarColumn<Double> srcVelCol( t0, "SRCVELOCITY" ) ;
2457    Double srcVel = srcVelCol( 0 ) ;
2458    srcRec_.define( srcName, srcId ) ;
2459
2460    // NAME
2461    *nameRF = srcName ;
2462
2463    // SOURCE_ID
2464    *srcidRF = srcId ;
2465
2466    // PROPER_MOTION
2467    *srcpmRF = srcPM ;
2468   
2469    // DIRECTION
2470    *srcdirRF = srcDir ;
2471
2472    //
2473    // ITERATION: MOLECULE_ID
2474    //
2475    TableIterator iter1( t0, "MOLECULE_ID" ) ;
2476    while( !iter1.pastEnd() ) {
2477      //Table t1( iter1.table() ) ;
2478      Table t1 = iter1.table() ;
2479
2480      // get necessary information
2481      ROScalarColumn<uInt> molIdCol( t1, "MOLECULE_ID" ) ;
2482      uInt molId = molIdCol( 0 ) ;
2483      stm.getEntry( restFreq, molName, fMolName, molId ) ;
2484
2485      uInt numFreq = restFreq.size() ;
2486     
2487      // NUM_LINES
2488      *numlineRF = numFreq ;
2489
2490      // REST_FREQUENCY
2491      *restfreqRF = restFreq ;
2492
2493      // TRANSITION
2494      //*transitionRF = fMolName ;
2495      Vector<String> transition ;
2496      if ( fMolName.size() != 0 ) {
2497        transition = fMolName ;
2498      }
2499      else if ( molName.size() != 0 ) {
2500        transition = molName ;
2501      }
2502      else {
2503        transition.resize( numFreq ) ;
2504        transition = "" ;
2505      }
2506      *transitionRF = transition ;
2507
2508      // SYSVEL
2509      Vector<Double> sysvelArr( numFreq, srcVel ) ;
2510      *sysvelRF = sysvelArr ;
2511
2512      //
2513      // ITERATION: IFNO
2514      //
2515      TableIterator iter2( t1, "IFNO" ) ;
2516      while( !iter2.pastEnd() ) {
2517        //Table t2( iter2.table() ) ;
2518        Table t2 = iter2.table() ;
2519        uInt nrow = msSrc.nrow() ;
2520
2521        // get necessary information
2522        ROScalarColumn<uInt> ifNoCol( t2, "IFNO" ) ;
2523        uInt ifno = ifNoCol( 0 ) ; // IFNO = SPECTRAL_WINDOW_ID
2524        Double midTime ;
2525        Double interval ;
2526        getValidTimeRange( midTime, interval, t2 ) ;
2527
2528        // fill SPECTRAL_WINDOW_ID
2529        *spwidRF = ifno ;
2530
2531        // fill TIME, INTERVAL
2532        *timeRF = midTime ;
2533        *intervalRF = interval ;
2534
2535        // add row
2536        msSrc.addRow( 1, True ) ;
2537        row.put( nrow ) ;
2538
2539        iter2.next() ;
2540      }
2541
2542      iter1.next() ;
2543    }
2544
2545    // increment srcId if SRCNAME changed
2546    srcId++ ;
2547
2548    iter0.next() ;
2549  }
2550
2551//   double endSec = mathutil::gettimeofday_sec() ;
2552//   os_ << "end MSWriter::fillSource() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2553}
2554
2555void MSWriter::fillWeather()
2556{
2557//   double startSec = mathutil::gettimeofday_sec() ;
2558//   os_ << "start MSWriter::fillWeather() startSec=" << startSec << LogIO::POST ;
2559
2560  // access to MS WEATHER subtable
2561  MSWeather msw = mstable_->weather() ;
2562
2563  // access to WEATHER subtable
2564  Table stw = table_->weather().table() ;
2565  uInt nrow = stw.nrow() ;
2566
2567  if ( nrow == 0 )
2568    return ;
2569
2570  msw.addRow( nrow, True ) ;
2571  MSWeatherColumns mswCols( msw ) ;
2572
2573  // ANTENNA_ID is always 0
2574  Vector<Int> antIdArr( nrow, 0 ) ;
2575  mswCols.antennaId().putColumn( antIdArr ) ;
2576
2577  // fill weather status
2578  ROScalarColumn<Float> sharedFloatCol( stw, "TEMPERATURE" ) ;
2579  mswCols.temperature().putColumn( sharedFloatCol ) ;
2580  sharedFloatCol.attach( stw, "PRESSURE" ) ;
2581  mswCols.pressure().putColumn( sharedFloatCol ) ;
2582  sharedFloatCol.attach( stw, "HUMIDITY" ) ;
2583  mswCols.relHumidity().putColumn( sharedFloatCol ) ;
2584  sharedFloatCol.attach( stw, "WINDSPEED" ) ;
2585  mswCols.windSpeed().putColumn( sharedFloatCol ) ;
2586  sharedFloatCol.attach( stw, "WINDAZ" ) ;
2587  mswCols.windDirection().putColumn( sharedFloatCol ) ;
2588
2589  // fill TIME and INTERVAL
2590  Double midTime ;
2591  Double interval ;
2592  Vector<Double> intervalArr( nrow, 0.0 ) ;
2593  TableIterator iter( table_->table(), "WEATHER_ID" ) ;
2594  while( !iter.pastEnd() ) {
2595    //Table tab( iter.table() ) ;
2596    Table tab = iter.table() ;
2597
2598    ROScalarColumn<uInt> widCol( tab, "WEATHER_ID" ) ;
2599    uInt wid = widCol( 0 ) ;
2600
2601    getValidTimeRange( midTime, interval, tab ) ;
2602    mswCols.time().put( wid, midTime ) ;
2603    intervalArr[wid] = interval ;
2604
2605    iter.next() ;
2606  }
2607  mswCols.interval().putColumn( intervalArr ) ;
2608
2609//   double endSec = mathutil::gettimeofday_sec() ;
2610//   os_ << "end MSWriter::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2611}
2612
2613void MSWriter::fillSysCal()
2614{
2615  Table mssc = mstable_->sysCal() ;
2616
2617  {
2618    static const char *cols[] = {
2619      "BEAMNO", "IFNO", "TIME", "POLNO",
2620      NULL
2621    };
2622    static const TypeManagerImpl<uInt> tmUInt;
2623    static const TypeManagerImpl<Double> tmDouble;
2624    static const TypeManager *const tms[] = {
2625      &tmUInt, &tmUInt, &tmDouble, &tmUInt, NULL
2626    };
2627    //double t0 = mathutil::gettimeofday_sec() ;
2628    MSSysCalVisitor myVisitor(table_->table(),mssc);
2629    //double t1 = mathutil::gettimeofday_sec() ;
2630    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2631    traverseTable(table_->table(), cols, tms, &myVisitor);
2632    //double t3 = mathutil::gettimeofday_sec() ;
2633    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2634  }
2635 
2636}
2637
2638void MSWriter::getValidTimeRange( Double &me, Double &interval, Table &tab )
2639{
2640//   double startSec = mathutil::gettimeofday_sec() ;
2641//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2642
2643  // sort table
2644  //Table stab = tab.sort( "TIME" ) ;
2645
2646  ROScalarColumn<Double> timeCol( tab, "TIME" ) ;
2647  Vector<Double> timeArr = timeCol.getColumn() ;
2648  Double minTime ;
2649  Double maxTime ;
2650  minMax( minTime, maxTime, timeArr ) ;
2651  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2652  // unit for TIME
2653  // Scantable: "d"
2654  // MS: "s"
2655  me = midTime ;
2656  interval = ( maxTime - minTime ) * 86400.0 ;
2657
2658//   double endSec = mathutil::gettimeofday_sec() ;
2659//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2660}
2661
2662void MSWriter::getValidTimeRange( Double &me, Double &interval, Vector<Double> &atime, Vector<Double> &ainterval )
2663{
2664//   double startSec = mathutil::gettimeofday_sec() ;
2665//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2666
2667  // sort table
2668  //Table stab = tab.sort( "TIME" ) ;
2669
2670  Double minTime ;
2671  Double maxTime ;
2672  minMax( minTime, maxTime, atime ) ;
2673  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2674  // unit for TIME
2675  // Scantable: "d"
2676  // MS: "s"
2677  me = midTime ;
2678  interval = ( maxTime - minTime ) * 86400.0 + mean( ainterval ) ;
2679
2680//   double endSec = mathutil::gettimeofday_sec() ;
2681//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2682}
2683
2684}
Note: See TracBrowser for help on using the repository browser.