// // C++ Interface: MSWriter // // Description: // // This class is specific writer for MS format // // Takeshi Nakazato , (C) 2010 // // Copyright: See COPYING file that comes with this distribution // // #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include "MSWriter.h" #include "STHeader.h" #include "STFrequencies.h" #include "STMolecules.h" #include "STTcal.h" #include "MathUtils.h" // #include // #include using namespace casa ; using namespace std ; namespace asap { // double MSWriter::gettimeofday_sec() // { // struct timeval tv ; // gettimeofday( &tv, NULL ) ; // return tv.tv_sec + (double)tv.tv_usec*1.0e-6 ; // } MSWriter::MSWriter(CountedPtr stable) : table_(stable), isTcal_(False), isWeather_(False), tcalSpec_(False), tsysSpec_(False), ptTabName_("") { os_ = LogIO() ; os_.origin( LogOrigin( "MSWriter", "MSWriter()", WHERE ) ) ; // os_ << "MSWriter::MSWriter()" << LogIO::POST ; // initialize writer init() ; } MSWriter::~MSWriter() { os_.origin( LogOrigin( "MSWriter", "~MSWriter()", WHERE ) ) ; // os_ << "MSWriter::~MSWriter()" << LogIO::POST ; if ( mstable_ != 0 ) delete mstable_ ; } bool MSWriter::write(const string& filename, const Record& rec) { os_.origin( LogOrigin( "MSWriter", "write()", WHERE ) ) ; // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::write() startSec=" << startSec << LogIO::POST ; filename_ = filename ; // parsing MS options Bool overwrite = False ; if ( rec.isDefined( "ms" ) ) { Record msrec = rec.asRecord( "ms" ) ; if ( msrec.isDefined( "overwrite" ) ) { overwrite = msrec.asBool( "overwrite" ) ; } } os_ << "Parsing MS options" << endl ; os_ << " overwrite = " << overwrite << LogIO::POST ; File file( filename_ ) ; if ( file.exists() ) { if ( overwrite ) { os_ << filename_ << " exists. Overwrite existing data... " << LogIO::POST ; if ( file.isRegular() ) RegularFile(file).remove() ; else if ( file.isDirectory() ) Directory(file).removeRecursive() ; else SymLink(file).remove() ; } else { os_ << LogIO::SEVERE << "ERROR: " << filename_ << " exists..." << LogIO::POST ; return False ; } } // set up MS setupMS() ; // subtables // OBSERVATION fillObservation() ; // ANTENNA fillAntenna() ; // PROCESSOR fillProcessor() ; // SOURCE fillSource() ; // WEATHER if ( isWeather_ ) fillWeather() ; // MAIN // Iterate over several ids Vector processedFreqId( 0 ) ; Int defaultFieldId = 0 ; // row based TableRow row( *mstable_ ) ; TableRecord &trec = row.record() ; NoticeTarget *dataRF = 0 ; if ( useFloatData_ ) dataRF = new RecordFieldPtr< Array >( trec, "FLOAT_DATA" ) ; else if ( useData_ ) dataRF = new RecordFieldPtr< Array >( trec, "DATA" ) ; RecordFieldPtr< Array > flagRF( trec, "FLAG" ) ; RecordFieldPtr flagrowRF( trec, "FLAG_ROW" ) ; RecordFieldPtr timeRF( trec, "TIME" ) ; RecordFieldPtr timecRF( trec, "TIME_CENTROID" ) ; RecordFieldPtr intervalRF( trec, "INTERVAL" ) ; RecordFieldPtr exposureRF( trec, "EXPOSURE" ) ; RecordFieldPtr< Array > weightRF( trec, "WEIGHT" ) ; RecordFieldPtr< Array > sigmaRF( trec, "SIGMA" ) ; RecordFieldPtr ddidRF( trec, "DATA_DESC_ID" ) ; RecordFieldPtr stateidRF( trec, "STATE_ID" ) ; RecordFieldPtr< Array > flagcatRF( trec, "FLAG_CATEGORY" ) ; // OBSERVATION_ID is always 0 RecordFieldPtr intRF( trec, "OBSERVATION_ID" ) ; *intRF = 0 ; // ANTENNA1 and ANTENNA2 are always 0 intRF.attachToRecord( trec, "ANTENNA1" ) ; *intRF = 0 ; intRF.attachToRecord( trec, "ANTENNA2" ) ; *intRF = 0 ; // ARRAY_ID is tentatively set to 0 intRF.attachToRecord( trec, "ARRAY_ID" ) ; *intRF = 0 ; // PROCESSOR_ID is tentatively set to 0 intRF.attachToRecord( trec, "PROCESSOR_ID" ) ; *intRF = 0 ; // UVW is always [0,0,0] RecordFieldPtr< Array > uvwRF( trec, "UVW" ) ; *uvwRF = Vector( 3, 0.0 ) ; // // ITERATION: FIELDNAME // TableIterator iter0( table_->table(), "FIELDNAME" ) ; while( !iter0.pastEnd() ) { //Table t0( iter0.table() ) ; Table t0 = iter0.table() ; ROTableColumn sharedCol( t0, "FIELDNAME" ) ; String fieldName = sharedCol.asString( 0 ) ; sharedCol.attach( t0, "SRCNAME" ) ; String srcName = sharedCol.asString( 0 ) ; sharedCol.attach( t0, "TIME" ) ; Double minTime = (Double)sharedCol.asdouble( 0 ) * 86400.0 ; // day->sec ROArrayColumn scanRateCol( t0, "SCANRATE" ) ; Vector scanRate = scanRateCol( 0 ) ; String::size_type pos = fieldName.find( "__" ) ; Int fieldId = -1 ; if ( pos != String::npos ) { // os_ << "fieldName.substr( pos+2 )=" << fieldName.substr( pos+2 ) << LogIO::POST ; fieldId = String::toInt( fieldName.substr( pos+2 ) ) ; fieldName = fieldName.substr( 0, pos ) ; } else { // os_ << "use default field id" << LogIO::POST ; fieldId = defaultFieldId ; defaultFieldId++ ; } // os_ << "fieldId" << fieldId << ": " << fieldName << LogIO::POST ; // FIELD_ID intRF.attachToRecord( trec, "FIELD_ID" ) ; *intRF = fieldId ; // // ITERATION: BEAMNO // TableIterator iter1( t0, "BEAMNO" ) ; while( !iter1.pastEnd() ) { Table t1 = iter1.table() ; sharedCol.attach( t1, "BEAMNO" ) ; uInt beamNo = sharedCol.asuInt( 0 ) ; // os_ << "beamNo = " << beamNo << LogIO::POST ; // FEED1 and FEED2 intRF.attachToRecord( trec, "FEED1" ) ; *intRF = beamNo ; intRF.attachToRecord( trec, "FEED2" ) ; *intRF = beamNo ; // // ITERATION: SCANNO // TableIterator iter2( t1, "SCANNO" ) ; while( !iter2.pastEnd() ) { Table t2 = iter2.table() ; sharedCol.attach( t2, "SCANNO" ) ; uInt scanNo = sharedCol.asuInt( 0 ) ; // os_ << "scanNo = " << scanNo << LogIO::POST ; // SCAN_NUMBER // MS: 1-based // Scantable: 0-based intRF.attachToRecord( trec, "SCAN_NUMBER" ) ; *intRF = scanNo + 1 ; // // ITERATION: IFNO // TableIterator iter3( t2, "IFNO" ) ; while( !iter3.pastEnd() ) { Table t3 = iter3.table() ; sharedCol.attach( t3, "IFNO" ) ; uInt ifNo = sharedCol.asuInt( 0 ) ; // os_ << "ifNo = " << ifNo << LogIO::POST ; sharedCol.attach( t3, "FREQ_ID" ) ; uInt freqId = sharedCol.asuInt( 0 ) ; // os_ << "freqId = " << freqId << LogIO::POST ; Int subscan = 1 ; // 1-base // // ITERATION: SRCTYPE // TableIterator iter4( t3, "SRCTYPE" ) ; while( !iter4.pastEnd() ) { Table t4 = iter4.table() ; sharedCol.attach( t4, "SRCTYPE" ) ; Int srcType = sharedCol.asInt( 0 ) ; Int stateId = addState( srcType, subscan ) ; *stateidRF = stateId ; // // ITERATION: CYCLENO and TIME // Block cols( 2 ) ; cols[0] = "CYCLENO" ; cols[1] = "TIME" ; TableIterator iter5( t4, cols ) ; while( !iter5.pastEnd() ) { Table t5 = iter5.table().sort("POLNO") ; //sharedCol.attach( t5, "CYCLENO" ) ; //uInt cycleNo = sharedCol.asuInt( 0 ) ; Int nrow = t5.nrow() ; // os_ << "nrow = " << nrow << LogIO::POST ; Vector polnos( nrow ) ; indgen( polnos, 0 ) ; Int polid = addPolarization( polnos ) ; // os_ << "polid = " << polid << LogIO::POST ; // DATA/FLOAT_DATA ROArrayColumn specCol( t5, "SPECTRA" ) ; ROArrayColumn flagCol( t5, "FLAGTRA" ) ; uInt nchan = specCol( 0 ).size() ; IPosition cellshape( 2, nrow, nchan ) ; if ( useFloatData_ ) { // FLOAT_DATA Matrix dataArr( cellshape ) ; Matrix flagArr( cellshape ) ; Vector tmpB ; for ( Int ipol = 0 ; ipol < nrow ; ipol++ ) { dataArr.row( ipol ) = specCol( ipol ) ; tmpB.reference( flagArr.row( ipol ) ) ; convertArray( tmpB, flagCol( ipol ) ) ; } ((RecordFieldPtr< Array > *)dataRF)->define( dataArr ) ; // FLAG flagRF.define( flagArr ) ; } else if ( useData_ ) { // DATA // assume nrow = 4 Matrix dataArr( cellshape ) ; Vector zeroIm( nchan, 0 ) ; Matrix dummy( IPosition( 2, 2, nchan ) ) ; dummy.row( 0 ) = specCol( 0 ) ; dummy.row( 1 ) = zeroIm ; dataArr.row( 0 ) = RealToComplex( dummy ) ; dummy.row( 0 ) = specCol( 1 ) ; dataArr.row( 3 ) = RealToComplex( dummy ) ; dummy.row( 0 ) = specCol( 2 ) ; dummy.row( 1 ) = specCol( 3 ) ; dataArr.row( 1 ) = RealToComplex( dummy ) ; dataArr.row( 2 ) = conj( dataArr.row( 1 ) ) ; ((RecordFieldPtr< Array > *)dataRF)->define( dataArr ) ; // FLAG Matrix flagArr( cellshape ) ; Vector tmpB ; tmpB.reference( flagArr.row( 0 ) ) ; convertArray( tmpB, flagCol( 0 ) ) ; tmpB.reference( flagArr.row( 3 ) ) ; convertArray( tmpB, flagCol( 3 ) ) ; tmpB.reference( flagArr.row( 1 ) ) ; convertArray( tmpB, ( flagCol( 2 ) | flagCol( 3 ) ) ) ; flagArr.row( 2 ) = flagArr.row( 1 ) ; flagRF.define( flagArr ) ; } // FLAG_ROW sharedCol.attach( t5, "FLAGROW" ) ; Vector flagRowArr( nrow ) ; for ( Int irow = 0 ; irow < nrow ; irow++ ) flagRowArr[irow] = sharedCol.asuInt( irow ) ; *flagrowRF = anyNE( flagRowArr, (uInt)0 ) ; // TIME and TIME_CENTROID sharedCol.attach( t5, "TIME" ) ; Double mTimeV = (Double)sharedCol.asdouble( 0 ) * 86400.0 ; // day -> sec *timeRF = mTimeV ; *timecRF = mTimeV ; // INTERVAL and EXPOSURE sharedCol.attach( t5, "INTERVAL" ) ; Double interval = (Double)sharedCol.asdouble( 0 ) ; *intervalRF = interval ; *exposureRF = interval ; // WEIGHT and SIGMA // always 1 at the moment Vector wArr( nrow, 1.0 ) ; weightRF.define( wArr ) ; sigmaRF.define( wArr ) ; // add DATA_DESCRIPTION row Int ddid = addDataDescription( polid, ifNo ) ; // os_ << "ddid = " << ddid << LogIO::POST ; *ddidRF = ddid ; // for SYSCAL table sharedCol.attach( t5, "TCAL_ID" ) ; Vector tcalIdArr( nrow ) ; for ( Int irow = 0 ; irow < nrow ; irow++ ) tcalIdArr[irow] = sharedCol.asuInt( irow ) ; // os_ << "tcalIdArr = " << tcalIdArr << LogIO::POST ; String key = String::toString( tcalIdArr[0] ) ; if ( !tcalIdRec_.isDefined( key ) ) { tcalIdRec_.define( key, tcalIdArr ) ; tcalRowRec_.define( key, t5.rowNumbers() ) ; } else { Vector pastrows = tcalRowRec_.asArrayuInt( key ) ; tcalRowRec_.define( key, concatenateArray( pastrows, t5.rowNumbers() ) ) ; } // for POINTING table if ( ptTabName_ == "" ) { ROArrayColumn dirCol( t5, "DIRECTION" ) ; Vector dir = dirCol( 0 ) ; dirCol.attach( t5, "SCANRATE" ) ; Vector rate = dirCol( 0 ) ; Matrix msDir( 2, 1 ) ; msDir.column( 0 ) = dir ; if ( anyNE( rate, 0.0 ) ) { msDir.resize( 2, 2, True ) ; msDir.column( 1 ) = rate ; } addPointing( fieldName, mTimeV, interval, msDir ) ; } // FLAG_CATEGORY is tentatively set flagcatRF.define( Cube( nrow, nchan, 1, False ) ) ; // add row mstable_->addRow( 1, True ) ; row.put( mstable_->nrow()-1 ) ; iter5.next() ; } iter4.next() ; } // add SPECTRAL_WINDOW row if ( allNE( processedFreqId, freqId ) ) { uInt vsize = processedFreqId.size() ; processedFreqId.resize( vsize+1, True ) ; processedFreqId[vsize] = freqId ; addSpectralWindow( ifNo, freqId ) ; } iter3.next() ; } iter2.next() ; } // add FEED row addFeed( beamNo ) ; iter1.next() ; } // add FIELD row addField( fieldId, fieldName, srcName, minTime, scanRate ) ; iter0.next() ; } // delete tpoolr ; delete dataRF ; // SYSCAL if ( isTcal_ ) fillSysCal() ; // fill empty SPECTRAL_WINDOW rows infillSpectralWindow() ; // ASDM tables const TableRecord &stKeys = table_->table().keywordSet() ; TableRecord &msKeys = mstable_->rwKeywordSet() ; uInt nfields = stKeys.nfields() ; for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) { String kname = stKeys.name( ifield ) ; if ( kname.find( "ASDM" ) != String::npos ) { String asdmpath = stKeys.asString( ifield ) ; os_ << "found ASDM table: " << asdmpath << LogIO::POST ; if ( Table::isReadable( asdmpath ) ) { Table newAsdmTab( asdmpath, Table::Old ) ; newAsdmTab.copy( filename_+"/"+kname, Table::New ) ; os_ << "add subtable: " << kname << LogIO::POST ; msKeys.defineTable( kname, Table( filename_+"/"+kname, Table::Old ) ) ; } } } // replace POINTING table with original one if exists if ( ptTabName_ != "" ) { delete mstable_ ; mstable_ = 0 ; Table newPtTab( ptTabName_, Table::Old ) ; newPtTab.copy( filename_+"/POINTING", Table::New ) ; } // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::write() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; return True ; } void MSWriter::init() { // os_.origin( LogOrigin( "MSWriter", "init()", WHERE ) ) ; // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::init() startSec=" << startSec << LogIO::POST ; // access to scantable header_ = table_->getHeader() ; // FLOAT_DATA? or DATA? if ( header_.npol > 2 ) { useFloatData_ = False ; useData_ = True ; } else { useFloatData_ = True ; useData_ = False ; } // polarization type polType_ = header_.poltype ; if ( polType_ == "" ) polType_ = "stokes" ; else if ( polType_.find( "linear" ) != String::npos ) polType_ = "linear" ; else if ( polType_.find( "circular" ) != String::npos ) polType_ = "circular" ; else if ( polType_.find( "stokes" ) != String::npos ) polType_ = "stokes" ; else if ( polType_.find( "linpol" ) != String::npos ) polType_ = "linpol" ; else polType_ = "notype" ; // Check if some subtables are exists if ( table_->tcal().table().nrow() != 0 ) { ROTableColumn col( table_->tcal().table(), "TCAL" ) ; if ( col.isDefined( 0 ) ) { os_ << "TCAL table exists: nrow=" << table_->tcal().table().nrow() << LogIO::POST ; isTcal_ = True ; } else { os_ << "No TCAL rows" << LogIO::POST ; } } else { os_ << "No TCAL rows" << LogIO::POST ; } if ( table_->weather().table().nrow() != 0 ) { ROTableColumn col( table_->weather().table(), "TEMPERATURE" ) ; if ( col.isDefined( 0 ) ) { os_ << "WEATHER table exists: nrow=" << table_->weather().table().nrow() << LogIO::POST ; isWeather_ =True ; } else { os_ << "No WEATHER rows" << LogIO::POST ; } } else { os_ << "No WEATHER rows" << LogIO::POST ; } // Are TCAL_SPECTRUM and TSYS_SPECTRUM necessary? if ( isTcal_ && header_.nchan != 1 ) { // examine TCAL subtable Table tcaltab = table_->tcal().table() ; ROArrayColumn tcalCol( tcaltab, "TCAL" ) ; for ( uInt irow = 0 ; irow < tcaltab.nrow() ; irow++ ) { if ( tcalCol( irow ).size() != 1 ) tcalSpec_ = True ; } // examine spectral data TableIterator iter0( table_->table(), "IFNO" ) ; while( !iter0.pastEnd() ) { Table t0( iter0.table() ) ; ROArrayColumn sharedFloatArrCol( t0, "SPECTRA" ) ; uInt len = sharedFloatArrCol( 0 ).size() ; if ( len != 1 ) { sharedFloatArrCol.attach( t0, "TSYS" ) ; if ( sharedFloatArrCol( 0 ).size() != 1 ) tsysSpec_ = True ; } iter0.next() ; } } // check if reference for POINTING table exists const TableRecord &rec = table_->table().keywordSet() ; if ( rec.isDefined( "POINTING" ) ) { ptTabName_ = rec.asString( "POINTING" ) ; if ( !Table::isReadable( ptTabName_ ) ) { ptTabName_ = "" ; } } // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::init() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::setupMS() { // os_.origin( LogOrigin( "MSWriter", "setupMS()", WHERE ) ) ; // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::setupMS() startSec=" << startSec << LogIO::POST ; String dunit = table_->getHeader().fluxunit ; TableDesc msDesc = MeasurementSet::requiredTableDesc() ; if ( useFloatData_ ) MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::FLOAT_DATA, 2 ) ; else if ( useData_ ) MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::DATA, 2 ) ; SetupNewTable newtab( filename_, msDesc, Table::New ) ; mstable_ = new MeasurementSet( newtab ) ; TableColumn col ; if ( useFloatData_ ) col.attach( *mstable_, "FLOAT_DATA" ) ; else if ( useData_ ) col.attach( *mstable_, "DATA" ) ; col.rwKeywordSet().define( "UNIT", dunit ) ; // create subtables TableDesc antennaDesc = MSAntenna::requiredTableDesc() ; SetupNewTable antennaTab( mstable_->antennaTableName(), antennaDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::ANTENNA ), Table( antennaTab ) ) ; TableDesc dataDescDesc = MSDataDescription::requiredTableDesc() ; SetupNewTable dataDescTab( mstable_->dataDescriptionTableName(), dataDescDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DATA_DESCRIPTION ), Table( dataDescTab ) ) ; TableDesc dopplerDesc = MSDoppler::requiredTableDesc() ; SetupNewTable dopplerTab( mstable_->dopplerTableName(), dopplerDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DOPPLER ), Table( dopplerTab ) ) ; TableDesc feedDesc = MSFeed::requiredTableDesc() ; SetupNewTable feedTab( mstable_->feedTableName(), feedDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FEED ), Table( feedTab ) ) ; TableDesc fieldDesc = MSField::requiredTableDesc() ; SetupNewTable fieldTab( mstable_->fieldTableName(), fieldDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FIELD ), Table( fieldTab ) ) ; TableDesc flagCmdDesc = MSFlagCmd::requiredTableDesc() ; SetupNewTable flagCmdTab( mstable_->flagCmdTableName(), flagCmdDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FLAG_CMD ), Table( flagCmdTab ) ) ; TableDesc freqOffsetDesc = MSFreqOffset::requiredTableDesc() ; SetupNewTable freqOffsetTab( mstable_->freqOffsetTableName(), freqOffsetDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FREQ_OFFSET ), Table( freqOffsetTab ) ) ; TableDesc historyDesc = MSHistory::requiredTableDesc() ; SetupNewTable historyTab( mstable_->historyTableName(), historyDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::HISTORY ), Table( historyTab ) ) ; TableDesc observationDesc = MSObservation::requiredTableDesc() ; SetupNewTable observationTab( mstable_->observationTableName(), observationDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::OBSERVATION ), Table( observationTab ) ) ; TableDesc pointingDesc = MSPointing::requiredTableDesc() ; SetupNewTable pointingTab( mstable_->pointingTableName(), pointingDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POINTING ), Table( pointingTab ) ) ; TableDesc polarizationDesc = MSPolarization::requiredTableDesc() ; SetupNewTable polarizationTab( mstable_->polarizationTableName(), polarizationDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POLARIZATION ), Table( polarizationTab ) ) ; TableDesc processorDesc = MSProcessor::requiredTableDesc() ; SetupNewTable processorTab( mstable_->processorTableName(), processorDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::PROCESSOR ), Table( processorTab ) ) ; TableDesc sourceDesc = MSSource::requiredTableDesc() ; MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::TRANSITION, 1 ) ; MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::REST_FREQUENCY, 1 ) ; MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::SYSVEL, 1 ) ; SetupNewTable sourceTab( mstable_->sourceTableName(), sourceDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SOURCE ), Table( sourceTab ) ) ; TableDesc spwDesc = MSSpectralWindow::requiredTableDesc() ; SetupNewTable spwTab( mstable_->spectralWindowTableName(), spwDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SPECTRAL_WINDOW ), Table( spwTab ) ) ; TableDesc stateDesc = MSState::requiredTableDesc() ; SetupNewTable stateTab( mstable_->stateTableName(), stateDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::STATE ), Table( stateTab ) ) ; // TODO: add TCAL_SPECTRUM and TSYS_SPECTRUM if necessary TableDesc sysCalDesc = MSSysCal::requiredTableDesc() ; MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL, 2 ) ; MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS, 2 ) ; if ( tcalSpec_ ) MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL_SPECTRUM, 2 ) ; if ( tsysSpec_ ) MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS_SPECTRUM, 2 ) ; SetupNewTable sysCalTab( mstable_->sysCalTableName(), sysCalDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SYSCAL ), Table( sysCalTab ) ) ; TableDesc weatherDesc = MSWeather::requiredTableDesc() ; MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::TEMPERATURE ) ; MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::PRESSURE ) ; MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::REL_HUMIDITY ) ; MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_SPEED ) ; MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_DIRECTION ) ; SetupNewTable weatherTab( mstable_->weatherTableName(), weatherDesc, Table::New ) ; mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::WEATHER ), Table( weatherTab ) ) ; mstable_->initRefs() ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::setupMS() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::fillObservation() { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::fillObservation() startSec=" << startSec << LogIO::POST ; // only 1 row mstable_->observation().addRow( 1, True ) ; MSObservationColumns msObsCols( mstable_->observation() ) ; msObsCols.observer().put( 0, header_.observer ) ; // tentatively put antennaname (from ANTENNA subtable) String hAntennaName = header_.antennaname ; String::size_type pos = hAntennaName.find( "//" ) ; String telescopeName ; if ( pos != String::npos ) { telescopeName = hAntennaName.substr( 0, pos ) ; } else { pos = hAntennaName.find( "@" ) ; telescopeName = hAntennaName.substr( 0, pos ) ; } // os_ << "telescopeName = " << telescopeName << LogIO::POST ; msObsCols.telescopeName().put( 0, telescopeName ) ; msObsCols.project().put( 0, header_.project ) ; //ScalarMeasColumn timeCol( table_->table().sort("TIME"), "TIME" ) ; Table sortedtable = table_->table().sort("TIME") ; ScalarMeasColumn timeCol( sortedtable, "TIME" ) ; Vector trange( 2 ) ; trange[0] = timeCol( 0 ) ; trange[1] = timeCol( table_->nrow()-1 ) ; msObsCols.timeRangeMeas().put( 0, trange ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::fillObservation() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::fillAntenna() { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::fillAntenna() startSec=" << startSec << LogIO::POST ; // only 1 row mstable_->antenna().addRow( 1, True ) ; MSAntennaColumns msAntCols( mstable_->antenna() ) ; String hAntennaName = header_.antennaname ; String::size_type pos = hAntennaName.find( "//" ) ; String antennaName ; String stationName ; if ( pos != String::npos ) { hAntennaName = hAntennaName.substr( pos+2 ) ; } pos = hAntennaName.find( "@" ) ; if ( pos != String::npos ) { antennaName = hAntennaName.substr( 0, pos ) ; stationName = hAntennaName.substr( pos+1 ) ; } else { antennaName = hAntennaName ; stationName = hAntennaName ; } // os_ << "antennaName = " << antennaName << LogIO::POST ; // os_ << "stationName = " << stationName << LogIO::POST ; msAntCols.name().put( 0, antennaName ) ; msAntCols.station().put( 0, stationName ) ; // os_ << "antennaPosition = " << header_.antennaposition << LogIO::POST ; msAntCols.position().put( 0, header_.antennaposition ) ; // MOUNT is set to "ALT-AZ" msAntCols.mount().put( 0, "ALT-AZ" ) ; Double diameter = getDishDiameter( antennaName ) ; msAntCols.dishDiameterQuant().put( 0, Quantity( diameter, "m" ) ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::fillAntenna() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::fillProcessor() { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::fillProcessor() startSec=" << startSec << LogIO::POST ; // only add empty 1 row MSProcessor msProc = mstable_->processor() ; msProc.addRow( 1, True ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::fillProcessor() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::fillSource() { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::fillSource() startSec=" << startSec << LogIO::POST ; // access to MS SOURCE subtable MSSource msSrc = mstable_->source() ; // access to MOLECULE subtable STMolecules stm = table_->molecules() ; Int srcId = 0 ; Vector restFreq ; Vector molName ; Vector fMolName ; // row based TableRow row( msSrc ) ; TableRecord &rec = row.record() ; RecordFieldPtr srcidRF( rec, "SOURCE_ID" ) ; RecordFieldPtr nameRF( rec, "NAME" ) ; RecordFieldPtr< Array > srcpmRF( rec, "PROPER_MOTION" ) ; RecordFieldPtr< Array > srcdirRF( rec, "DIRECTION" ) ; RecordFieldPtr numlineRF( rec, "NUM_LINES" ) ; RecordFieldPtr< Array > restfreqRF( rec, "REST_FREQUENCY" ) ; RecordFieldPtr< Array > sysvelRF( rec, "SYSVEL" ) ; RecordFieldPtr< Array > transitionRF( rec, "TRANSITION" ) ; RecordFieldPtr timeRF( rec, "TIME" ) ; RecordFieldPtr intervalRF( rec, "INTERVAL" ) ; RecordFieldPtr spwidRF( rec, "SPECTRAL_WINDOW_ID" ) ; // // ITERATION: SRCNAME // TableIterator iter0( table_->table(), "SRCNAME" ) ; while( !iter0.pastEnd() ) { //Table t0( iter0.table() ) ; Table t0 = iter0.table() ; // get necessary information ROScalarColumn srcNameCol( t0, "SRCNAME" ) ; String srcName = srcNameCol( 0 ) ; ROArrayColumn sharedDArrRCol( t0, "SRCPROPERMOTION" ) ; Vector srcPM = sharedDArrRCol( 0 ) ; sharedDArrRCol.attach( t0, "SRCDIRECTION" ) ; Vector srcDir = sharedDArrRCol( 0 ) ; ROScalarColumn srcVelCol( t0, "SRCVELOCITY" ) ; Double srcVel = srcVelCol( 0 ) ; // NAME *nameRF = srcName ; // SOURCE_ID *srcidRF = srcId ; // PROPER_MOTION *srcpmRF = srcPM ; // DIRECTION *srcdirRF = srcDir ; // // ITERATION: MOLECULE_ID // TableIterator iter1( t0, "MOLECULE_ID" ) ; while( !iter1.pastEnd() ) { //Table t1( iter1.table() ) ; Table t1 = iter1.table() ; // get necessary information ROScalarColumn molIdCol( t1, "MOLECULE_ID" ) ; uInt molId = molIdCol( 0 ) ; stm.getEntry( restFreq, molName, fMolName, molId ) ; uInt numFreq = restFreq.size() ; // NUM_LINES *numlineRF = numFreq ; // REST_FREQUENCY *restfreqRF = restFreq ; // TRANSITION //*transitionRF = fMolName ; Vector transition ; if ( fMolName.size() != 0 ) { transition = fMolName ; } else if ( molName.size() != 0 ) { transition = molName ; } else { transition.resize( numFreq ) ; transition = "" ; } *transitionRF = transition ; // SYSVEL Vector sysvelArr( numFreq, srcVel ) ; *sysvelRF = sysvelArr ; // // ITERATION: IFNO // TableIterator iter2( t1, "IFNO" ) ; while( !iter2.pastEnd() ) { //Table t2( iter2.table() ) ; Table t2 = iter2.table() ; uInt nrow = msSrc.nrow() ; // get necessary information ROScalarColumn ifNoCol( t2, "IFNO" ) ; uInt ifno = ifNoCol( 0 ) ; // IFNO = SPECTRAL_WINDOW_ID Double midTime ; Double interval ; getValidTimeRange( midTime, interval, t2 ) ; // fill SPECTRAL_WINDOW_ID *spwidRF = ifno ; // fill TIME, INTERVAL *timeRF = midTime ; *intervalRF = interval ; // add row msSrc.addRow( 1, True ) ; row.put( nrow ) ; iter2.next() ; } iter1.next() ; } // increment srcId if SRCNAME changed srcId++ ; iter0.next() ; } // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::fillSource() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::fillWeather() { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::fillWeather() startSec=" << startSec << LogIO::POST ; // access to MS WEATHER subtable MSWeather msw = mstable_->weather() ; // access to WEATHER subtable Table stw = table_->weather().table() ; uInt nrow = stw.nrow() ; if ( nrow == 0 ) return ; msw.addRow( nrow, True ) ; MSWeatherColumns mswCols( msw ) ; // ANTENNA_ID is always 0 Vector antIdArr( nrow, 0 ) ; mswCols.antennaId().putColumn( antIdArr ) ; // fill weather status ROScalarColumn sharedFloatCol( stw, "TEMPERATURE" ) ; mswCols.temperature().putColumn( sharedFloatCol ) ; sharedFloatCol.attach( stw, "PRESSURE" ) ; mswCols.pressure().putColumn( sharedFloatCol ) ; sharedFloatCol.attach( stw, "HUMIDITY" ) ; mswCols.relHumidity().putColumn( sharedFloatCol ) ; sharedFloatCol.attach( stw, "WINDSPEED" ) ; mswCols.windSpeed().putColumn( sharedFloatCol ) ; sharedFloatCol.attach( stw, "WINDAZ" ) ; mswCols.windDirection().putColumn( sharedFloatCol ) ; // fill TIME and INTERVAL Double midTime ; Double interval ; Vector intervalArr( nrow, 0.0 ) ; TableIterator iter( table_->table(), "WEATHER_ID" ) ; while( !iter.pastEnd() ) { //Table tab( iter.table() ) ; Table tab = iter.table() ; ROScalarColumn widCol( tab, "WEATHER_ID" ) ; uInt wid = widCol( 0 ) ; getValidTimeRange( midTime, interval, tab ) ; mswCols.time().put( wid, midTime ) ; intervalArr[wid] = interval ; iter.next() ; } mswCols.interval().putColumn( intervalArr ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::fillSysCal() { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::fillSysCal() startSec=" << startSec << LogIO::POST ; //tcalIdRec_.print( cout ) ; // access to MS SYSCAL subtable MSSysCal mssc = mstable_->sysCal() ; // access to TCAL subtable Table stt = table_->tcal().table() ; uInt nrow = stt.nrow() ; // access to MAIN table Block cols( 6 ) ; cols[0] = "TIME" ; cols[1] = "TCAL_ID" ; cols[2] = "TSYS" ; cols[3] = "BEAMNO" ; cols[4] = "IFNO" ; cols[5] = "INTERVAL" ; Table tab = table_->table().project( cols ) ; if ( nrow == 0 ) return ; nrow = tcalIdRec_.nfields() ; Double midTime ; Double interval ; String timeStr ; // row base TableRow row( mssc ) ; TableRecord &trec = row.record() ; RecordFieldPtr antennaRF( trec, "ANTENNA_ID" ) ; RecordFieldPtr feedRF( trec, "FEED_ID" ) ; RecordFieldPtr spwRF( trec, "SPECTRAL_WINDOW_ID" ) ; RecordFieldPtr timeRF( trec, "TIME" ) ; RecordFieldPtr intervalRF( trec, "INTERVAL" ) ; RecordFieldPtr< Array > tsysRF( trec, "TSYS" ) ; RecordFieldPtr< Array > tcalRF( trec, "TCAL" ) ; RecordFieldPtr< Array > tsysspRF ; RecordFieldPtr< Array > tcalspRF ; if ( tsysSpec_ ) tsysspRF.attachToRecord( trec, "TSYS_SPECTRUM" ) ; if ( tcalSpec_ ) tcalspRF.attachToRecord( trec, "TCAL_SPECTRUM" ) ; // ANTENNA_ID is always 0 *antennaRF = 0 ; Table sortedstt = stt.sort( "ID" ) ; ROArrayColumn tcalCol( sortedstt, "TCAL" ) ; ROTableColumn idCol( sortedstt, "ID" ) ; ROArrayColumn tsysCol( tab, "TSYS" ) ; ROTableColumn tcalidCol( tab, "TCAL_ID" ) ; ROTableColumn timeCol( tab, "TIME" ) ; ROTableColumn intervalCol( tab, "INTERVAL" ) ; ROTableColumn beamnoCol( tab, "BEAMNO" ) ; ROTableColumn ifnoCol( tab, "IFNO" ) ; for ( uInt irow = 0 ; irow < nrow ; irow++ ) { // double t1 = mathutil::gettimeofday_sec() ; Vector ids = tcalIdRec_.asArrayuInt( irow ) ; // os_ << "ids = " << ids << LogIO::POST ; uInt npol = ids.size() ; Vector rows = tcalRowRec_.asArrayuInt( irow ) ; // os_ << "rows = " << rows << LogIO::POST ; Vector atime( rows.nelements() ) ; Vector ainterval( rows.nelements() ) ; Vector atcalid( rows.nelements() ) ; for( uInt jrow = 0 ; jrow < rows.nelements() ; jrow++ ) { atime[jrow] = (Double)timeCol.asdouble( rows[jrow] ) ; ainterval[jrow] = (Double)intervalCol.asdouble( rows[jrow] ) ; atcalid[jrow] = tcalidCol.asuInt( rows[jrow] ) ; } Vector dummy = tsysCol( rows[0] ) ; Matrix tsys( npol,dummy.nelements() ) ; tsys.row( 0 ) = dummy ; for ( uInt jrow = 1 ; jrow < npol ; jrow++ ) tsys.row( jrow ) = tsysCol( rows[jrow] ) ; // FEED_ID *feedRF = beamnoCol.asuInt( rows[0] ) ; // SPECTRAL_WINDOW_ID *spwRF = ifnoCol.asuInt( rows[0] ) ; // TIME and INTERVAL getValidTimeRange( midTime, interval, atime, ainterval ) ; *timeRF = midTime ; *intervalRF = interval ; // TCAL and TSYS Matrix tcal ; Table t ; if ( idCol.asuInt( ids[0] ) == ids[0] ) { // os_ << "sorted at irow=" << irow << " ids[0]=" << ids[0] << LogIO::POST ; Vector dummyC = tcalCol( ids[0] ) ; tcal.resize( npol, dummyC.size() ) ; tcal.row( 0 ) = dummyC ; } else { // os_ << "NOT sorted at irow=" << irow << " ids[0]=" << ids[0] << LogIO::POST ; t = stt( stt.col("ID") == ids[0], 1 ) ; Vector dummyC = tcalCol( 0 ) ; tcal.resize( npol, dummyC.size(), True ) ; tcal.row( 0 ) = dummyC ; } if ( npol == 2 ) { if ( idCol.asuInt( ids[1] ) == ids[1] ) { // os_ << "sorted at irow=" << irow << " ids[1]=" << ids[1] << LogIO::POST ; tcal.row( 1 ) = tcalCol( ids[1] ) ; } else { // os_ << "NOT sorted at irow=" << irow << " ids[1]=" << ids[1] << LogIO::POST ; t = stt( stt.col("ID") == ids[1], 1 ) ; tcalCol.attach( t, "TCAL" ) ; tcal.row( 1 ) = tcalCol( 0 ) ; } } else if ( npol == 3 ) { if ( idCol.asuInt( ids[2] ) == ids[2] ) tcal.row( 1 ) = tcalCol( ids[2] ) ; else { t = stt( stt.col("ID") == ids[2], 1 ) ; tcalCol.attach( t, "TCAL" ) ; tcal.row( 1 ) = tcalCol( 0 ) ; } if ( idCol.asuInt( ids[1] ) == ids[1] ) tcal.row( 2 ) = tcalCol( ids[1] ) ; else { t = stt( stt.col("ID") == ids[1], 1 ) ; tcalCol.attach( t, "TCAL" ) ; tcal.row( 2 ) = tcalCol( 0 ) ; } } else if ( npol == 4 ) { if ( idCol.asuInt( ids[2] ) == ids[2] ) tcal.row( 1 ) = tcalCol( ids[2] ) ; else { t = stt( stt.col("ID") == ids[2], 1 ) ; tcalCol.attach( t, "TCAL" ) ; tcal.row( 1 ) = tcalCol( 0 ) ; } if ( idCol.asuInt( ids[3] ) == ids[3] ) tcal.row( 2 ) = tcalCol( ids[3] ) ; else { t = stt( stt.col("ID") == ids[3], 1 ) ; tcalCol.attach( t, "TCAL" ) ; tcal.row( 2 ) = tcalCol( 0 ) ; } if ( idCol.asuInt( ids[1] ) == ids[1] ) tcal.row( 2 ) = tcalCol( ids[1] ) ; else { t = stt( stt.col("ID") == ids[1], 1 ) ; tcalCol.attach( t, "TCAL" ) ; tcal.row( 3 ) = tcalCol( 0 ) ; } } if ( tcalSpec_ ) { // put TCAL_SPECTRUM //*tcalspRF = tcal ; tcalspRF.define( tcal ) ; // set TCAL (mean of TCAL_SPECTRUM) Matrix tcalMean( npol, 1 ) ; for ( uInt iid = 0 ; iid < npol ; iid++ ) { tcalMean( iid, 0 ) = mean( tcal.row(iid) ) ; } // put TCAL *tcalRF = tcalMean ; } else { // put TCAL *tcalRF = tcal ; } if ( tsysSpec_ ) { // put TSYS_SPECTRUM //*tsysspRF = tsys ; tsysspRF.define( tsys ) ; // set TSYS (mean of TSYS_SPECTRUM) Matrix tsysMean( npol, 1 ) ; for ( uInt iid = 0 ; iid < npol ; iid++ ) { tsysMean( iid, 0 ) = mean( tsys.row(iid) ) ; } // put TSYS *tsysRF = tsysMean ; } else { // put TSYS *tsysRF = tsys ; } // add row mssc.addRow( 1, True ) ; row.put( mssc.nrow()-1 ) ; // double t2 = mathutil::gettimeofday_sec() ; // os_ << irow << "th loop elapsed time = " << t2-t1 << "sec" << LogIO::POST ; } // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::fillSysCal() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::addFeed( Int id ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::addFeed() startSec=" << startSec << LogIO::POST ; // add row MSFeed msFeed = mstable_->feed() ; msFeed.addRow( 1, True ) ; Int nrow = msFeed.nrow() ; Int numReceptors = 2 ; Vector polType( numReceptors ) ; Matrix beamOffset( 2, numReceptors ) ; beamOffset = 0.0 ; Vector receptorAngle( numReceptors, 0.0 ) ; if ( polType_ == "linear" ) { polType[0] = "X" ; polType[1] = "Y" ; } else if ( polType_ == "circular" ) { polType[0] = "R" ; polType[1] = "L" ; } else { polType[0] = "X" ; polType[1] = "Y" ; } Matrix polResponse( numReceptors, numReceptors, 0.0 ) ; for ( Int i = 0 ; i < numReceptors ; i++ ) polResponse( i, i ) = 0.0 ; MSFeedColumns msFeedCols( mstable_->feed() ) ; msFeedCols.feedId().put( nrow-1, id ) ; msFeedCols.antennaId().put( nrow-1, 0 ) ; msFeedCols.numReceptors().put( nrow-1, numReceptors ) ; msFeedCols.polarizationType().put( nrow-1, polType ) ; msFeedCols.beamOffset().put( nrow-1, beamOffset ) ; msFeedCols.receptorAngle().put( nrow-1, receptorAngle ) ; msFeedCols.polResponse().put( nrow-1, polResponse ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::addFeed() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::addSpectralWindow( Int spwid, Int freqid ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::addSpectralWindow() startSec=" << startSec << LogIO::POST ; // add row MSSpectralWindow msSpw = mstable_->spectralWindow() ; while( (Int)msSpw.nrow() <= spwid ) { msSpw.addRow( 1, True ) ; } MSSpWindowColumns msSpwCols( msSpw ) ; STFrequencies stf = table_->frequencies() ; // MEAS_FREQ_REF msSpwCols.measFreqRef().put( spwid, stf.getFrame( True ) ) ; Double refpix ; Double refval ; Double inc ; stf.getEntry( refpix, refval, inc, (uInt)freqid ) ; // NUM_CHAN //Int nchan = (Int)(refpix * 2) + 1 ; //if ( nchan == 0 ) //nchan = 1 ; Int nchan = table_->nchan( spwid ) ; msSpwCols.numChan().put( spwid, nchan ) ; // TOTAL_BANDWIDTH Double bw = nchan * abs( inc ) ; msSpwCols.totalBandwidth().put( spwid, bw ) ; // REF_FREQUENCY Double refFreq = refval - refpix * inc ; msSpwCols.refFrequency().put( spwid, refFreq ) ; // NET_SIDEBAND // tentative: USB->0, LSB->1 Int netSideband = 0 ; if ( inc < 0 ) netSideband = 1 ; msSpwCols.netSideband().put( spwid, netSideband ) ; // RESOLUTION, CHAN_WIDTH, EFFECTIVE_BW Vector sharedDoubleArr( nchan, abs(inc) ) ; msSpwCols.resolution().put( spwid, sharedDoubleArr ) ; msSpwCols.chanWidth().put( spwid, sharedDoubleArr ) ; msSpwCols.effectiveBW().put( spwid, sharedDoubleArr ) ; // CHAN_FREQ indgen( sharedDoubleArr, refFreq, inc ) ; msSpwCols.chanFreq().put( spwid, sharedDoubleArr ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::addSpectralWindow() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::addField( Int fid, String fieldname, String srcname, Double t, Vector rate ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::addField() startSec=" << startSec << LogIO::POST ; MSField msField = mstable_->field() ; while( (Int)msField.nrow() <= fid ) { msField.addRow( 1, True ) ; } MSFieldColumns msFieldCols( msField ) ; // Access to SOURCE table MSSource msSrc = mstable_->source() ; // fill target row msFieldCols.name().put( fid, fieldname ) ; msFieldCols.time().put( fid, t ) ; Int numPoly = 0 ; if ( anyNE( rate, 0.0 ) ) numPoly = 1 ; msFieldCols.numPoly().put( fid, numPoly ) ; MSSourceIndex msSrcIdx( msSrc ) ; Int srcId = -1 ; Vector srcIdArr = msSrcIdx.matchSourceName( srcname ) ; if ( srcIdArr.size() != 0 ) { srcId = srcIdArr[0] ; MSSource msSrcSel = msSrc( msSrc.col("SOURCE_ID") == srcId, 1 ) ; ROMSSourceColumns msSrcCols( msSrcSel ) ; Vector srcDir = msSrcCols.direction()( 0 ) ; Matrix srcDirA( IPosition( 2, 2, 1+numPoly ) ) ; // os_ << "srcDirA = " << srcDirA << LogIO::POST ; // os_ << "sliced srcDirA = " << srcDirA.column( 0 ) << LogIO::POST ; srcDirA.column( 0 ) = srcDir ; // os_ << "srcDirA = " << srcDirA << LogIO::POST ; if ( numPoly != 0 ) srcDirA.column( 1 ) = rate ; msFieldCols.phaseDir().put( fid, srcDirA ) ; msFieldCols.referenceDir().put( fid, srcDirA ) ; msFieldCols.delayDir().put( fid, srcDirA ) ; } msFieldCols.sourceId().put( fid, srcId ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::addField() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::addPointing( String &name, Double &me, Double &interval, Matrix &dir ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::addPointing() startSec=" << startSec << LogIO::POST ; // access to POINTING subtable MSPointing msp = mstable_->pointing() ; uInt nrow = msp.nrow() ; // add row msp.addRow( 1, True ) ; // fill row TableRow row( msp ) ; TableRecord &rec = row.record() ; RecordFieldPtr antennaRF( rec, "ANTENNA_ID" ) ; *antennaRF = 0 ; RecordFieldPtr numpolyRF( rec, "NUM_POLY" ) ; *numpolyRF = dir.ncolumn() - 1 ; RecordFieldPtr timeRF( rec, "TIME" ) ; *timeRF = me ; RecordFieldPtr toriginRF( rec, "TIME_ORIGIN" ) ; *toriginRF = me ; RecordFieldPtr intervalRF( rec, "INTERVAL" ) ; *intervalRF = interval ; RecordFieldPtr nameRF( rec, "NAME" ) ; *nameRF = name ; RecordFieldPtr trackRF( rec, "TRACKING" ) ; *trackRF = True ; RecordFieldPtr< Array > dirRF( rec, "DIRECTION" ) ; *dirRF = dir ; RecordFieldPtr< Array > targetRF( rec, "TARGET" ) ; *targetRF = dir ; row.put( nrow ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::addPointing() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } Int MSWriter::addPolarization( Vector polnos ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::addPolarization() startSec=" << startSec << LogIO::POST ; // os_ << "polnos = " << polnos << LogIO::POST ; MSPolarization msPol = mstable_->polarization() ; uInt nrow = msPol.nrow() ; // // only 1 POLARIZATION row for 1 scantable // if ( nrow > 0 ) // return 0 ; Vector corrType = toCorrType( polnos ) ; ROArrayColumn corrtCol( msPol, "CORR_TYPE" ) ; //Matrix corrTypeArr = corrtCol.getColumn() ; Int polid = -1 ; for ( uInt irow = 0 ; irow < nrow ; irow++ ) { Vector corrTypeArr = corrtCol( irow ) ; if ( corrType.nelements() == corrTypeArr.nelements() && allEQ( corrType, corrTypeArr ) ) { polid = irow ; break ; } } if ( polid == -1 ) { MSPolarizationColumns msPolCols( msPol ) ; // add row msPol.addRow( 1, True ) ; polid = (Int)nrow ; // CORR_TYPE msPolCols.corrType().put( nrow, corrType ) ; // NUM_CORR uInt npol = corrType.size() ; msPolCols.numCorr().put( nrow, npol ) ; // CORR_PRODUCT Matrix corrProd( 2, npol, -1 ) ; if ( npol == 1 ) { corrProd = 0 ; } else if ( npol == 2 ) { corrProd.column( 0 ) = 0 ; corrProd.column( 1 ) = 1 ; } else { corrProd.column( 0 ) = 0 ; corrProd.column( 3 ) = 1 ; corrProd( 0,1 ) = 0 ; corrProd( 1,1 ) = 1 ; corrProd( 0,2 ) = 1 ; corrProd( 1,2 ) = 0 ; } msPolCols.corrProduct().put( nrow, corrProd ) ; } // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::addPolarization() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; return polid ; } Int MSWriter::addDataDescription( Int polid, Int spwid ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::addDataDescription() startSec=" << startSec << LogIO::POST ; MSDataDescription msDataDesc = mstable_->dataDescription() ; uInt nrow = msDataDesc.nrow() ; // only 1 POLARIZATION_ID for 1 scantable Int ddid = -1 ; ROScalarColumn spwCol( msDataDesc, "SPECTRAL_WINDOW_ID" ) ; Vector spwIds = spwCol.getColumn() ; //ROScalarColumn polCol( msDataDesc, "POLARIZATION_ID" ) ; //Vector polIds = polCol.getColumn() ; for ( uInt irow = 0 ; irow < nrow ; irow++ ) { //if ( spwid == spwIds[irow] && polid == polIds[irow] ) { if ( spwid == spwIds[irow] ) { ddid = irow ; break ; } } // os_ << "ddid = " << ddid << LogIO::POST ; if ( ddid == -1 ) { msDataDesc.addRow( 1, True ) ; MSDataDescColumns msDataDescCols( msDataDesc ) ; msDataDescCols.polarizationId().put( nrow, polid ) ; msDataDescCols.spectralWindowId().put( nrow, spwid ) ; ddid = (Int)nrow ; } // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::addDataDescription() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; return ddid ; } Int MSWriter::addState( Int st, Int &subscan ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::addState() startSec=" << startSec << LogIO::POST ; // access to STATE subtable MSState msState = mstable_->state() ; uInt nrow = msState.nrow() ; String obsMode ; Bool isSignal ; Double tnoise ; Double tload ; queryType( st, obsMode, isSignal, tnoise, tload ) ; // os_ << "obsMode = " << obsMode << " isSignal = " << isSignal << LogIO::POST ; Int idx = -1 ; ROScalarColumn obsModeCol( msState, "OBS_MODE" ) ; ROScalarColumn subscanCol( msState, "SUB_SCAN" ) ; for ( uInt irow = 0 ; irow < nrow ; irow++ ) { if ( obsModeCol(irow) == obsMode //&& sigCol(irow) == isSignal //&& refCol(irow) != isSignal && subscanCol(irow) == subscan ) { idx = irow ; break ; } } if ( idx == -1 ) { msState.addRow( 1, True ) ; TableRow row( msState ) ; TableRecord &rec = row.record() ; RecordFieldPtr obsmodeRF( rec, "OBS_MODE" ) ; *obsmodeRF = obsMode ; RecordFieldPtr sigRF( rec, "SIG" ) ; *sigRF = isSignal ; RecordFieldPtr refRF( rec, "REF" ) ; *refRF = !isSignal ; RecordFieldPtr subscanRF( rec, "SUB_SCAN" ) ; *subscanRF = subscan ; RecordFieldPtr noiseRF( rec, "CAL" ) ; *noiseRF = tnoise ; RecordFieldPtr loadRF( rec, "LOAD" ) ; *loadRF = tload ; row.put( nrow ) ; idx = nrow ; } subscan++ ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::addState() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; return idx ; } Vector MSWriter::toCorrType( Vector polnos ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::toCorrType() startSec=" << startSec << LogIO::POST ; uInt npol = polnos.size() ; Vector corrType( npol, Stokes::Undefined ) ; if ( npol == 4 ) { if ( polType_ == "linear" ) { for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) { if ( polnos[ipol] == 0 ) corrType[ipol] = Stokes::XX ; else if ( polnos[ipol] == 1 ) corrType[ipol] = Stokes::XY ; else if ( polnos[ipol] == 2 ) corrType[ipol] = Stokes::YX ; else if ( polnos[ipol] == 3 ) corrType[ipol] = Stokes::YY ; } } else if ( polType_ == "circular" ) { for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) { if ( polnos[ipol] == 0 ) corrType[ipol] = Stokes::RR ; else if ( polnos[ipol] == 1 ) corrType[ipol] = Stokes::RL ; else if ( polnos[ipol] == 2 ) corrType[ipol] = Stokes::LR ; else if ( polnos[ipol] == 3 ) corrType[ipol] = Stokes::LL ; } } else if ( polType_ == "stokes" ) { for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) { if ( polnos[ipol] == 0 ) corrType[ipol] = Stokes::I ; else if ( polnos[ipol] == 1 ) corrType[ipol] = Stokes::Q ; else if ( polnos[ipol] == 2 ) corrType[ipol] = Stokes::U ; else if ( polnos[ipol] == 3 ) corrType[ipol] = Stokes::V ; } } } else if ( npol == 2 ) { if ( polType_ == "linear" ) { for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) { if ( polnos[ipol] == 0 ) corrType[ipol] = Stokes::XX ; else if ( polnos[ipol] == 1 ) corrType[ipol] = Stokes::YY ; } } else if ( polType_ == "circular" ) { for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) { if ( polnos[ipol] == 0 ) corrType[ipol] = Stokes::RR ; else if ( polnos[ipol] == 1 ) corrType[ipol] = Stokes::LL ; } } else if ( polType_ == "stokes" ) { for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) { if ( polnos[ipol] == 0 ) corrType[ipol] = Stokes::I ; else if ( polnos[ipol] == 1 ) corrType[ipol] = Stokes::V ; } } else if ( polType_ == "linpol" ) { for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) { if ( polnos[ipol] == 1 ) corrType[ipol] = Stokes::Plinear ; else if ( polnos[ipol] == 2 ) corrType[ipol] = Stokes::Pangle ; } } } else if ( npol == 1 ) { if ( polType_ == "linear" ) corrType[0] = Stokes::XX ; else if ( polType_ == "circular" ) corrType[0] = Stokes::RR ; else if ( polType_ == "stokes" ) corrType[0] = Stokes::I ; } // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::toCorrType() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; return corrType ; } void MSWriter::getValidTimeRange( Double &me, Double &interval, Table &tab ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ; // sort table //Table stab = tab.sort( "TIME" ) ; ROScalarColumn timeCol( tab, "TIME" ) ; Vector timeArr = timeCol.getColumn() ; Double minTime ; Double maxTime ; minMax( minTime, maxTime, timeArr ) ; Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ; // unit for TIME // Scantable: "d" // MS: "s" me = midTime ; interval = ( maxTime - minTime ) * 86400.0 ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } void MSWriter::getValidTimeRange( Double &me, Double &interval, Vector &atime, Vector &ainterval ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ; // sort table //Table stab = tab.sort( "TIME" ) ; Double minTime ; Double maxTime ; minMax( minTime, maxTime, atime ) ; Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ; // unit for TIME // Scantable: "d" // MS: "s" me = midTime ; interval = ( maxTime - minTime ) * 86400.0 + mean( ainterval ) ; // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } //void MSWriter::queryType( Int type, String &stype, Bool &b ) void MSWriter::queryType( Int type, String &stype, Bool &b, Double &t, Double &l ) { // double startSec = mathutil::gettimeofday_sec() ; // os_ << "start MSWriter::queryType() startSec=" << startSec << LogIO::POST ; // 2011/03/14 TN // OBS_MODE string of MS created by importasdm task is slightly // (but critically) changed. // 2011/05/20 TN // OBS_MODE string of MS created by importasdm task is changed // again (separator is now "#" instead of "_" String sep1="#" ; String sep2="," ; String target="OBSERVE_TARGET" ; String atmcal="CALIBRATE_TEMPERATURE" ; String onstr="ON_SOURCE" ; String offstr="OFF_SOURCE" ; String pswitch="POSITION_SWITCH" ; String nod="NOD" ; String fswitch="FREQUENCY_SWITCH" ; String sigstr="SIG" ; String refstr="REF" ; String unspecified="UNSPECIFIED" ; String ftlow="LOWER" ; String fthigh="HIGHER" ; switch ( type ) { case SrcType::PSON: //stype = "OBSERVE_TARGET_ON_SOURCE,POSITION_SWITCH" ; stype = target+sep1+onstr+sep2+pswitch ; b = True ; t = 0.0 ; l = 0.0 ; break ; case SrcType::PSOFF: //stype = "OBSERVE_TARGET_OFF_SOURCE,POSITION_SWITCH" ; stype = target+sep1+offstr+sep2+pswitch ; b = False ; t = 0.0 ; l = 0.0 ; break ; case SrcType::NOD: //stype = "OBSERVE_TARGET_ON_SOURCE,NOD" ; stype = target+sep1+onstr+sep2+nod ; b = True ; t = 0.0 ; l = 0.0 ; break ; case SrcType::FSON: //stype = "OBSERVE_TARGET_ON_SOURCE,FREQUENCY_SWITCH_SIG" ; stype = target+sep1+onstr+sep2+fswitch+sep1+sigstr ; b = True ; t = 0.0 ; l = 0.0 ; break ; case SrcType::FSOFF: //stype = "OBSERVE_TARGET_ON_SOURCE,FREQUENCY_SWITCH_REF" ; stype = target+sep1+onstr+sep2+fswitch+sep1+refstr ; b = False ; t = 0.0 ; l = 0.0 ; break ; case SrcType::SKY: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,UNSPECIFIED" ; stype = atmcal+sep1+offstr+sep2+unspecified ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::HOT: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,UNSPECIFIED" ; stype = atmcal+sep1+offstr+sep2+unspecified ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::WARM: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,UNSPECIFIED" ; stype = atmcal+sep1+offstr+sep2+unspecified ; t = 0.0 ; b = False ; l = 1.0 ; break ; case SrcType::COLD: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,UNSPECIFIED" ; stype = atmcal+sep1+offstr+sep2+unspecified ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::PONCAL: //stype = "CALIBRATE_TEMPERATURE_ON_SOURCE,POSITION_SWITCH" ; stype = atmcal+sep1+onstr+sep2+pswitch ; b = True ; t = 1.0 ; l = 0.0 ; break ; case SrcType::POFFCAL: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,POSITION_SWITCH" ; stype = atmcal+sep1+offstr+sep2+pswitch ; b = False ; t = 1.0 ; l = 0.0 ; break ; case SrcType::NODCAL: //stype = "CALIBRATE_TEMPERATURE_ON_SOURCE,NOD" ; stype = atmcal+sep1+onstr+sep2+nod ; b = True ; t = 1.0 ; l = 0.0 ; break ; case SrcType::FONCAL: //stype = "CALIBRATE_TEMPERATURE_ON_SOURCE,FREQUENCY_SWITCH_SIG" ; stype = atmcal+sep1+onstr+sep2+fswitch+sep1+sigstr ; b = True ; t = 1.0 ; l = 0.0 ; break ; case SrcType::FOFFCAL: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_REF" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+refstr ; b = False ; t = 1.0 ; l = 0.0 ; break ; case SrcType::FSLO: //stype = "OBSERVE_TARGET_ON_SOURCE,FREQUENCY_SWITCH_LOWER" ; stype = target+sep1+onstr+sep2+fswitch+sep1+ftlow ; b = True ; t = 0.0 ; l = 0.0 ; break ; case SrcType::FLOOFF: //stype = "OBSERVE_TARGET_OFF_SOURCE,FREQUENCY_SWITCH_LOWER" ; stype = target+sep1+offstr+sep2+fswitch+sep1+ftlow ; b = False ; t = 0.0 ; l = 0.0 ; break ; case SrcType::FLOSKY: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_LOWER" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::FLOHOT: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_LOWER" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::FLOWARM: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_LOWER" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::FLOCOLD: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_LOWER" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::FSHI: //stype = "OBSERVE_TARGET_ON_SOURCE,FREQUENCY_SWITCH_HIGHER" ; stype = target+sep1+onstr+sep2+fswitch+sep1+fthigh ; b = True ; t = 0.0 ; l = 0.0 ; break ; case SrcType::FHIOFF: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_HIGHER" ; stype = target+sep1+offstr+sep2+fswitch+sep1+fthigh ; b = False ; t = 0.0 ; l = 0.0 ; break ; case SrcType::FHISKY: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_HIGHER" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::FHIHOT: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_HIGHER" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::FHIWARM: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_HIGHER" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::FHICOLD: //stype = "CALIBRATE_TEMPERATURE_OFF_SOURCE,FREQUENCY_SWITCH_HIGHER" ; stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ; b = False ; t = 0.0 ; l = 1.0 ; break ; case SrcType::SIG: //stype = "OBSERVE_TARGET_ON_SOURCE,UNSPECIFIED" ; stype = target+sep1+onstr+sep2+unspecified ; b = True ; t = 0.0 ; l = 0.0 ; break ; case SrcType::REF: //stype = "OBSERVE_TARGET_ON_SOURCE,UNSPECIFIED" ; stype = target+sep1+offstr+sep2+unspecified ; b = False ; t = 0.0 ; l = 0.0 ; break ; default: //stype = "UNSPECIFIED" ; stype = unspecified ; b = True ; t = 0.0 ; l = 0.0 ; break ; } // double endSec = mathutil::gettimeofday_sec() ; // os_ << "end MSWriter::queryType() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; } Double MSWriter::getDishDiameter( String antname ) { Double diameter = 0.0 ; antname.upcase() ; if ( antname.matches( Regex( "DV[0-9]+$" ) ) || antname.matches( Regex( "DA[0-9]+$" ) ) || antname.matches( Regex( "PM[0-9]+$" ) ) ) diameter = 12.0 ; else if ( antname.matches( Regex( "CM[0-9]+$" ) ) ) diameter = 7.0 ; else if ( antname.contains( "GBT" ) ) diameter = 104.9 ; else if ( antname.contains( "MOPRA" ) ) diameter = 22.0 ; else if ( antname.contains( "PKS" ) || antname.contains( "PARKS" ) ) diameter = 64.0 ; else if ( antname.contains( "TIDBINBILLA" ) ) diameter = 70.0 ; else if ( antname.contains( "CEDUNA" ) ) diameter = 30.0 ; else if ( antname.contains( "HOBART" ) ) diameter = 26.0 ; else if ( antname.contains( "APEX" ) ) diameter = 12.0 ; else if ( antname.contains( "ASTE" ) ) diameter = 10.0 ; else if ( antname.contains( "NRO" ) ) diameter = 45.0 ; else diameter = 1.0 ; return diameter ; } void MSWriter::infillSpectralWindow() { MSSpectralWindow msSpw = mstable_->spectralWindow() ; MSSpWindowColumns msSpwCols( msSpw ) ; uInt nrow = msSpw.nrow() ; ScalarColumn measFreqRefCol = msSpwCols.measFreqRef() ; ArrayColumn chanFreqCol = msSpwCols.chanFreq() ; ArrayColumn chanWidthCol = msSpwCols.chanWidth() ; ArrayColumn effectiveBWCol = msSpwCols.effectiveBW() ; ArrayColumn resolutionCol = msSpwCols.resolution() ; Vector dummy( 1, 0.0 ) ; for ( uInt irow = 0 ; irow < nrow ; irow++ ) { if ( !(chanFreqCol.isDefined( irow )) ) { measFreqRefCol.put( irow, 1 ) ; chanFreqCol.put( irow, dummy ) ; chanWidthCol.put( irow, dummy ) ; effectiveBWCol.put( irow, dummy ) ; resolutionCol.put( irow, dummy ) ; } } } }