source: trunk/src/MSFiller.cpp @ 2239

Last change on this file since 2239 was 2239, checked in by Takeshi Nakazato, 13 years ago

New Development: No

JIRA Issue: No

Ready for Test: Yes

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: List test programs

Put in Release Notes: Yes/No?

Module(s): Module Names change impacts.

Description: Describe your changes here...

Use ComplexToReal? instead of real and imag functions for 4 polarization
(e.g. XX, YY, XY, YX) data.


File size: 68.8 KB
Line 
1//
2// C++ Interface: MSFiller
3//
4// Description:
5//
6// This class is specific filler for MS format
7//
8// Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2010
9//
10// Copyright: See COPYING file that comes with this distribution
11//
12//
13
14#include <iostream>
15#include <map>
16
17#include <tables/Tables/ExprNode.h>
18#include <tables/Tables/TableIter.h>
19#include <tables/Tables/TableColumn.h>
20#include <tables/Tables/ScalarColumn.h>
21#include <tables/Tables/ArrayColumn.h>
22#include <tables/Tables/TableParse.h>
23#include <tables/Tables/TableRow.h>
24
25#include <casa/Containers/RecordField.h>
26#include <casa/Logging/LogIO.h>
27#include <casa/Arrays/Slicer.h>
28#include <casa/Quanta/MVTime.h>
29#include <casa/OS/Path.h>
30
31#include <measures/Measures/Stokes.h>
32#include <measures/Measures/MEpoch.h>
33#include <measures/Measures/MCEpoch.h>
34#include <measures/Measures/MFrequency.h>
35#include <measures/Measures/MCFrequency.h>
36#include <measures/Measures/MPosition.h>
37#include <measures/Measures/MCPosition.h>
38#include <measures/Measures/MDirection.h>
39#include <measures/Measures/MCDirection.h>
40#include <measures/Measures/MeasConvert.h>
41#include <measures/TableMeasures/ScalarMeasColumn.h>
42#include <measures/TableMeasures/ArrayMeasColumn.h>
43#include <measures/TableMeasures/ScalarQuantColumn.h>
44#include <measures/TableMeasures/ArrayQuantColumn.h>
45
46#include <ms/MeasurementSets/MSAntennaIndex.h>
47
48#include <atnf/PKSIO/SrcType.h>
49
50#include "MSFiller.h"
51#include "STHeader.h"
52
53#include <ctime>
54#include <sys/time.h>
55
56using namespace casa ;
57using namespace std ;
58
59namespace asap {
60double MSFiller::gettimeofday_sec()
61{
62  struct timeval tv ;
63  gettimeofday( &tv, NULL ) ;
64  return tv.tv_sec + (double)tv.tv_usec*1.0e-6 ;
65}
66
67MSFiller::MSFiller( casa::CountedPtr<Scantable> stable )
68  : table_( stable ),
69    tablename_( "" ),
70    antenna_( -1 ),
71    antennaStr_(""),
72    getPt_( True ),
73    isFloatData_( False ),
74    isData_( False ),
75    isDoppler_( False ),
76    isFlagCmd_( False ),
77    isFreqOffset_( False ),
78    isHistory_( False ),
79    isProcessor_( False ),
80    isSysCal_( False ),
81    isWeather_( False ),
82    colTsys_( "TSYS_SPECTRUM" ),
83    colTcal_( "TCAL_SPECTRUM" )
84{
85  os_ = LogIO() ;
86  os_.origin( LogOrigin( "MSFiller", "MSFiller()", WHERE ) ) ;
87}
88
89MSFiller::~MSFiller()
90{
91  os_.origin( LogOrigin( "MSFiller", "~MSFiller()", WHERE ) ) ;
92}
93
94bool MSFiller::open( const std::string &filename, const casa::Record &rec )
95{
96  os_.origin( LogOrigin( "MSFiller", "open()", WHERE ) ) ;
97  //double startSec = gettimeofday_sec() ;
98  //os_ << "start MSFiller::open() startsec=" << startSec << LogIO::POST ;
99  //os_ << "   filename = " << filename << endl ;
100
101  // parsing MS options
102  if ( rec.isDefined( "ms" ) ) {
103    Record msrec = rec.asRecord( "ms" ) ;
104    if ( msrec.isDefined( "getpt" ) ) {
105      getPt_ = msrec.asBool( "getpt" ) ;
106    }
107    if ( msrec.isDefined( "antenna" ) ) {
108      if ( msrec.type( msrec.fieldNumber( "antenna" ) ) == TpInt ) {
109        antenna_ = msrec.asInt( "antenna" ) ;
110      }
111      else {
112        //antenna_ = atoi( msrec.asString( "antenna" ).c_str() ) ;
113        antennaStr_ = msrec.asString( "antenna" ) ;
114      }
115    }
116    else {
117      antenna_ = 0 ;
118    }
119  }
120
121  MeasurementSet *tmpMS = new MeasurementSet( filename, Table::Old ) ;
122  //mstable_ = (*tmpMS)( tmpMS->col("ANTENNA1") == antenna_
123  //                     && tmpMS->col("ANTENNA1") == tmpMS->col("ANTENNA2") ) ;
124  tablename_ = tmpMS->tableName() ;
125  if ( antenna_ == -1 && antennaStr_.size() > 0 ) {
126    MSAntennaIndex msAntIdx( tmpMS->antenna() ) ;
127    Vector<Int> id = msAntIdx.matchAntennaName( antennaStr_ ) ;
128    if ( id.size() > 0 )
129      antenna_ = id[0] ;
130  }
131
132  os_ << "Parsing MS options" << endl ;
133  os_ << "   getPt = " << getPt_ << endl ;
134  os_ << "   antenna = " << antenna_ << endl ;
135  os_ << "   antennaStr = " << antennaStr_ << LogIO::POST ;
136
137  mstable_ = MeasurementSet( (*tmpMS)( tmpMS->col("ANTENNA1") == antenna_
138                                       && tmpMS->col("ANTENNA1") == tmpMS->col("ANTENNA2") ) ) ;
139//   stringstream ss ;
140//   ss << "SELECT FROM $1 WHERE ANTENNA1 == ANTENNA2 && ANTENNA1 == " << antenna_ ;
141//   String taql( ss.str() ) ;
142//   mstable_ = MeasurementSet( tableCommand( taql, *tmpMS ) ) ;
143  delete tmpMS ;
144
145  // check which data column exists
146  isFloatData_ = mstable_.tableDesc().isColumn( "FLOAT_DATA" ) ;
147  isData_ = mstable_.tableDesc().isColumn( "DATA" ) ;
148
149  //double endSec = gettimeofday_sec() ;
150  //os_ << "end MSFiller::open() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
151  return true ;
152}
153
154void MSFiller::fill()
155{
156  os_.origin( LogOrigin( "MSFiller", "fill()", WHERE ) ) ;
157  //double startSec = gettimeofday_sec() ;
158  //os_ << "start MSFiller::fill() startSec=" << startSec << LogIO::POST ;
159
160  //double time0 = gettimeofday_sec() ;
161  //os_ << "start init fill: " << time0 << LogIO::POST ;
162
163  // Initialize header
164  STHeader sdh ; 
165  initHeader( sdh ) ;
166 
167  // check if optional table exists
168  //const TableRecord msrec = tablesel_.keywordSet() ;
169  const TableRecord msrec = mstable_.keywordSet() ;
170  isDoppler_ = msrec.isDefined( "DOPPLER" ) ;
171  if ( isDoppler_ )
172    if ( mstable_.doppler().nrow() == 0 )
173      isDoppler_ = False ;
174  isFlagCmd_ = msrec.isDefined( "FLAG_CMD" ) ;
175  if ( isFlagCmd_ )
176    if ( mstable_.flagCmd().nrow() == 0 )
177      isFlagCmd_ = False ;
178  isFreqOffset_ = msrec.isDefined( "FREQ_OFFSET" ) ;
179  if ( isFreqOffset_ )
180    if ( mstable_.freqOffset().nrow() == 0 )
181      isFreqOffset_ = False ;
182  isHistory_ = msrec.isDefined( "HISTORY" ) ;
183  if ( isHistory_ )
184    if ( mstable_.history().nrow() == 0 )
185      isHistory_ = False ;
186  isProcessor_ = msrec.isDefined( "PROCESSOR" ) ;
187  if ( isProcessor_ )
188    if ( mstable_.processor().nrow() == 0 )
189      isProcessor_ = False ;
190  isSysCal_ = msrec.isDefined( "SYSCAL" ) ;
191  if ( isSysCal_ )
192    if ( mstable_.sysCal().nrow() == 0 )
193      isSysCal_ = False ;
194  isWeather_ = msrec.isDefined( "WEATHER" ) ;
195  if ( isWeather_ )
196    if ( mstable_.weather().nrow() == 0 )
197      isWeather_ = False ;
198
199  // Access to MS subtables
200  MSField fieldtab = mstable_.field() ;
201  MSPolarization poltab = mstable_.polarization() ;
202  MSDataDescription ddtab = mstable_.dataDescription() ;
203  MSObservation obstab = mstable_.observation() ;
204  MSSource srctab = mstable_.source() ;
205  MSSpectralWindow spwtab = mstable_.spectralWindow() ;
206  MSSysCal caltab = mstable_.sysCal() ;
207  if ( caltab.nrow() == 0 )
208    isSysCal_ = False ;
209  else {
210    if ( !caltab.tableDesc().isColumn( colTcal_ ) ) {
211      colTcal_ = "TCAL" ;
212      if ( !caltab.tableDesc().isColumn( colTcal_ ) )
213        colTcal_ = "NONE" ;
214    }
215    if ( !caltab.tableDesc().isColumn( colTsys_ ) ) {
216      colTsys_ = "TSYS" ;
217      if ( !caltab.tableDesc().isColumn( colTcal_ ) )
218        colTsys_ = "NONE" ;
219    }
220  }
221//   colTcal_ = "TCAL" ;
222//   colTsys_ = "TSYS" ;
223  MSPointing pointtab = mstable_.pointing() ;
224  if ( mstable_.weather().nrow() == 0 )
225    isWeather_ = False ;
226  MSState stattab = mstable_.state() ;
227  MSAntenna anttab = mstable_.antenna() ;
228
229  // TEST
230  // memory allocation by boost::object_pool
231  boost::object_pool<ROTableColumn> *tpoolr = new boost::object_pool<ROTableColumn> ;
232  //
233
234  // SUBTABLES: FREQUENCIES
235  //string freqFrame = getFrame() ;
236  string freqFrame = "LSRK" ;
237  table_->frequencies().setFrame( freqFrame ) ;
238  table_->frequencies().setFrame( freqFrame, True ) ;
239
240  // SUBTABLES: WEATHER
241  fillWeather() ;
242
243  // SUBTABLES: FOCUS
244  fillFocus() ;
245
246  // SUBTABLES: TCAL
247  fillTcal( tpoolr ) ;
248
249  // SUBTABLES: FIT
250  //fillFit() ;
251
252  // SUBTABLES: HISTORY
253  //fillHistory() ;
254
255  // MAIN
256  // Iterate over several ids
257  map<Int, uInt> ifmap ; // (IFNO, FREQ_ID) pair
258  ROArrayQuantColumn<Double> *sharedQDArrCol = new ROArrayQuantColumn<Double>( anttab, "POSITION" ) ;
259  Vector< Quantum<Double> > antpos = (*sharedQDArrCol)( antenna_ ) ;
260  delete sharedQDArrCol ;
261  MPosition mp( MVPosition( antpos ), MPosition::ITRF ) ;
262  if ( getPt_ ) {
263    pointtab = MSPointing( pointtab( pointtab.col("ANTENNA_ID")==antenna_ ).sort("TIME") ) ;
264  }
265  ROScalarColumn<Double> ptcol( pointtab, "TIME" ) ;
266  ROArrayColumn<Double> pdcol( pointtab, "DIRECTION" ) ;
267  String stationName = asString( "STATION", antenna_, anttab, tpoolr ) ;
268  String antennaName = asString( "NAME", antenna_, anttab, tpoolr ) ;
269  sdh.antennaposition.resize( 3 ) ;
270  for ( int i = 0 ; i < 3 ; i++ )
271    sdh.antennaposition[i] = antpos[i].getValue( "m" ) ;
272  String telescopeName = "" ;
273
274  //double time1 = gettimeofday_sec() ;
275  //os_ << "end init fill: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
276
277  // row based
278  Table &stab = table_->table() ;
279  TableRow row( stab ) ;
280  TableRecord &trec = row.record() ;
281  RecordFieldPtr< Array<Float> > spRF( trec, "SPECTRA" ) ;
282  RecordFieldPtr< Array<uChar> > ucarrRF( trec, "FLAGTRA" ) ;
283  RecordFieldPtr<Double> timeRF( trec, "TIME" ) ;
284  RecordFieldPtr< Array<Float> > tsysRF( trec, "TSYS" ) ;
285  RecordFieldPtr<Double> intervalRF( trec, "INTERVAL" ) ;
286  RecordFieldPtr< Array<Double> > dirRF( trec, "DIRECTION" ) ;
287  RecordFieldPtr<Float> azRF( trec, "AZIMUTH" ) ;
288  RecordFieldPtr<Float> elRF( trec, "ELEVATION" ) ;
289  RecordFieldPtr< Array<Double> > scrRF( trec, "SCANRATE" ) ;
290  RecordFieldPtr<uInt> cycleRF( trec, "CYCLENO" ) ;
291  RecordFieldPtr<uInt> flrRF( trec, "FLAGROW" ) ;
292  RecordFieldPtr<uInt> tcalidRF( trec, "TCAL_ID" ) ;
293  RecordFieldPtr<uInt> widRF( trec, "WEATHER_ID" ) ;
294  RecordFieldPtr<uInt> polnoRF( trec, "POLNO" ) ;
295  RecordFieldPtr<Int> refbRF( trec, "REFBEAMNO" ) ;
296  RecordFieldPtr<Int> fitidRF( trec, "FIT_ID" ) ;
297  RecordFieldPtr<Float> tauRF( trec, "OPACITY" ) ;
298  RecordFieldPtr<uInt> beamRF( trec, "BEAMNO" ) ;
299  RecordFieldPtr<uInt> focusidRF( trec, "FOCUS_ID" ) ;
300  RecordFieldPtr<uInt> ifnoRF( trec, "IFNO" ) ;
301  RecordFieldPtr<uInt> molidRF( trec, "MOLECULE_ID" ) ;
302  RecordFieldPtr<uInt> freqidRF( trec, "FREQ_ID" ) ;
303  RecordFieldPtr<uInt> scanRF( trec, "SCANNO" ) ;
304  RecordFieldPtr<Int> srctypeRF( trec, "SRCTYPE" ) ;
305  RecordFieldPtr<String> srcnameRF( trec, "SRCNAME" ) ;
306  RecordFieldPtr<String> fieldnameRF( trec, "FIELDNAME" ) ;
307  RecordFieldPtr< Array<Double> > srcpmRF( trec, "SRCPROPERMOTION" ) ;
308  RecordFieldPtr< Array<Double> > srcdirRF( trec, "SRCDIRECTION" ) ;
309  RecordFieldPtr<Double> sysvelRF( trec, "SRCVELOCITY" ) ;
310
311  // REFBEAMNO
312  *refbRF = -1 ;
313
314  // FIT_ID
315  *fitidRF = -1 ;
316
317  // OPACITY
318  *tauRF = 0.0 ;
319
320  //
321  // ITERATION: OBSERVATION_ID
322  //
323  TableIterator iter0( mstable_, "OBSERVATION_ID" ) ;
324  while( !iter0.pastEnd() ) {
325    //time0 = gettimeofday_sec() ;
326    //os_ << "start 0th iteration: " << time0 << LogIO::POST ;
327    Table t0 = iter0.table() ;
328    Int obsId = asInt( "OBSERVATION_ID", 0, t0, tpoolr ) ;
329    if ( sdh.observer == "" ) {
330      sdh.observer = asString( "OBSERVER", obsId, obstab, tpoolr ) ;
331    }
332    if ( sdh.project == "" ) {
333      sdh.project = asString( "PROJECT", obsId, obstab, tpoolr ) ;
334    }
335    ROArrayMeasColumn<MEpoch> *tmpMeasCol = new ROArrayMeasColumn<MEpoch>( obstab, "TIME_RANGE" ) ;
336    MEpoch me = (*tmpMeasCol)( obsId )( IPosition(1,0) ) ;
337    delete tmpMeasCol ;
338    if ( sdh.utc == 0.0 ) {
339      sdh.utc = me.get( "d" ).getValue() ;
340    }
341    if ( telescopeName == "" ) {
342      telescopeName = asString( "TELESCOPE_NAME", obsId, obstab, tpoolr ) ;
343    }
344    Int nbeam = 0 ;
345    //time1 = gettimeofday_sec() ;
346    //os_ << "end 0th iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
347    //
348    // ITERATION: FEED1
349    //
350    TableIterator iter1( t0, "FEED1" ) ;
351    while( !iter1.pastEnd() ) {
352      //time0 = gettimeofday_sec() ;
353      //os_ << "start 1st iteration: " << time0 << LogIO::POST ;
354      Table t1 = iter1.table() ;
355      // assume FEED1 == FEED2
356      Int feedId = asInt( "FEED1", 0, t1, tpoolr ) ;
357      nbeam++ ;
358
359      // BEAMNO
360      *beamRF = feedId ;
361
362      // FOCUS_ID
363      *focusidRF = 0 ;
364
365      //time1 = gettimeofday_sec() ;
366      //os_ << "end 1st iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
367      //
368      // ITERATION: FIELD_ID
369      //
370      TableIterator iter2( t1, "FIELD_ID" ) ;
371      while( !iter2.pastEnd() ) {
372        //time0 = gettimeofday_sec() ;
373        //os_ << "start 2nd iteration: " << time0 << LogIO::POST ;
374        Table t2 = iter2.table() ;
375        Int fieldId = asInt( "FIELD_ID", 0, t2, tpoolr ) ;
376        Int srcId = asInt( "SOURCE_ID", fieldId, fieldtab, tpoolr ) ;
377        String fieldName = asString( "NAME", fieldId, fieldtab, tpoolr ) ;
378        fieldName += "__" + String::toString(fieldId) ;
379        ROArrayMeasColumn<MDirection> *delayDirCol = new ROArrayMeasColumn<MDirection>( fieldtab, "DELAY_DIR" ) ;
380        Vector<MDirection> delayDir = (*delayDirCol)( fieldId ) ;
381        delete delayDirCol ;         
382
383        // FIELDNAME
384        *fieldnameRF = fieldName ;
385
386
387        //time1 = gettimeofday_sec() ;
388        //os_ << "end 2nd iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
389        //
390        // ITERATION: DATA_DESC_ID
391        //
392        TableIterator iter3( t2, "DATA_DESC_ID" ) ;
393        while( !iter3.pastEnd() ) {
394          //time0 = gettimeofday_sec() ;
395          //os_ << "start 3rd iteration: " << time0 << LogIO::POST ;
396          Table t3 = iter3.table() ;
397          Int ddId = asInt( "DATA_DESC_ID", 0, t3, tpoolr ) ;
398          Int polId = asInt( "POLARIZATION_ID", ddId, ddtab, tpoolr ) ;
399          Int spwId = asInt( "SPECTRAL_WINDOW_ID", ddId, ddtab, tpoolr ) ;
400
401          // IFNO
402          *ifnoRF = (uInt)spwId ;
403
404          // polarization information
405          Int npol = asInt( "NUM_CORR", polId, poltab, tpoolr ) ;
406          ROArrayColumn<Int> *roArrICol = new ROArrayColumn<Int>( poltab, "CORR_TYPE" ) ;
407          Vector<Int> corrtype = (*roArrICol)( polId ) ;
408          delete roArrICol ;
409          String srcName( "" ) ;
410          Vector<Double> srcPM( 2, 0.0 ) ;
411          Vector<Double> srcDir( 2, 0.0 ) ;
412          MDirection md ;
413          Vector<Double> restFreqs ;
414          Vector<String> transitionName ;
415          Vector<Double> sysVels ;
416//           os_ << "npol = " << npol << LogIO::POST ;
417//           os_ << "corrtype = " << corrtype << LogIO::POST ;
418
419          // source and molecular transition
420          sourceInfo( srcId, spwId, srcName, md, srcPM, restFreqs, transitionName, sysVels, tpoolr ) ;
421//           os_ << "srcId = " << srcId << ", spwId = " << spwId << LogIO::POST ;
422
423          // SRCNAME
424          *srcnameRF = srcName ;
425
426//           os_ << "srcName = " << srcName << LogIO::POST ;
427
428          // SRCPROPERMOTION
429          *srcpmRF = srcPM ;
430
431          //os_ << "srcPM = " << srcPM << LogIO::POST ;
432
433          // SRCDIRECTION
434          *srcdirRF = md.getAngle().getValue( "rad" ) ;
435
436          //os_ << "srcDir = " << srcDir << LogIO::POST ;
437
438          // SRCVELOCITY
439          Double sysVel = 0.0 ;
440          if ( !sysVels.empty() )
441            sysVel = sysVels[0] ;
442          *sysvelRF = sysVel ;
443
444//           os_ << "sysVel = " << sysVel << LogIO::POST ;
445
446          uInt molId = table_->molecules().addEntry( restFreqs, transitionName, transitionName ) ;
447
448          // MOLECULE_ID
449          *molidRF = molId ;
450
451          // spectral setup
452          uInt freqId ;
453          Int nchan = asInt( "NUM_CHAN", spwId, spwtab, tpoolr ) ;
454          Bool iswvr = False ;
455          if ( nchan == 4 ) iswvr = True ;
456          sdh.nchan = max( sdh.nchan, nchan ) ;
457          map<Int,uInt>::iterator iter = ifmap.find( spwId ) ;
458          if ( iter == ifmap.end() ) {
459            ROScalarMeasColumn<MEpoch> *tmpMeasCol = new ROScalarMeasColumn<MEpoch>( t3, "TIME" ) ;
460            me = (*tmpMeasCol)( 0 ) ;
461            delete tmpMeasCol ;
462            Double refpix ;
463            Double refval ;
464            Double increment ;
465            spectralSetup( spwId,
466                           me,
467                           mp,
468                           md,
469                           refpix,
470                           refval,
471                           increment,
472                           nchan,
473                           sdh.freqref,
474                           sdh.reffreq,
475                           sdh.bandwidth,
476                           tpoolr ) ;
477            freqId = table_->frequencies().addEntry( refpix, refval, increment ) ;
478            ifmap.insert( pair<Int, uInt>(spwId,freqId) ) ;
479            //os_ << "added to ifmap: (" << spwId << "," << freqId << ")" << LogIO::POST ;
480          }
481          else {
482            freqId = iter->second ;
483          }
484
485          // FREQ_ID
486          *freqidRF = freqId ;
487
488          // for TSYS and TCAL
489          Vector<MEpoch> scTime ;
490          Vector<Double> scInterval ;
491          ROArrayColumn<Float> scTsysCol ;
492          MSSysCal caltabsel ;
493          if ( isSysCal_ ) {
494            caltabsel = caltab( caltab.col("ANTENNA_ID") == antenna_ && caltab.col("FEED_ID") == feedId && caltab.col("SPECTRAL_WINDOW_ID") == spwId ).sort("TIME") ;
495            ROScalarMeasColumn<MEpoch> scTimeCol( caltabsel, "TIME" ) ;
496            scTime.resize( caltabsel.nrow() ) ;
497            for ( uInt irow = 0 ; irow < caltabsel.nrow() ; irow++ )
498              scTime[irow] = scTimeCol( irow ) ;
499            ROScalarColumn<Double> *scIntervalCol = new ROScalarColumn<Double>( caltabsel, "INTERVAL" ) ;
500            scInterval = scIntervalCol->getColumn() ;
501            delete scIntervalCol ;
502            if ( colTsys_ != "NONE" )
503              scTsysCol.attach( caltabsel, colTsys_ ) ;
504          }
505
506          sdh.npol = max( sdh.npol, npol ) ;
507          if ( !iswvr && sdh.poltype == "" ) sdh.poltype = getPolType( corrtype[0] ) ;
508
509          //time1 = gettimeofday_sec() ;
510          //os_ << "end 3rd iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
511          //
512          // ITERATION: SCAN_NUMBER
513          //
514          TableIterator iter4( t3, "SCAN_NUMBER" ) ;
515          while( !iter4.pastEnd() ) {
516            //time0 = gettimeofday_sec() ;
517            //os_ << "start 4th iteration: " << time0 << LogIO::POST ;
518            Table t4 = iter4.table() ;
519            Int scanNum = asInt( "SCAN_NUMBER", 0, t4, tpoolr ) ;
520
521            // SCANNO
522            *scanRF = scanNum - 1 ;
523
524            //time1 = gettimeofday_sec() ;
525            //os_ << "end 4th iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
526            //
527            // ITERATION: STATE_ID
528            //
529            TableIterator iter5( t4, "STATE_ID" ) ;
530            while( !iter5.pastEnd() ) {
531              //time0 = gettimeofday_sec() ;
532              //os_ << "start 5th iteration: " << time0 << LogIO::POST ;
533              Table t5 = iter5.table() ;
534              Int stateId = asInt( "STATE_ID", 0, t5, tpoolr ) ;
535              String obstype = asString( "OBS_MODE", 0, stattab, tpoolr ) ;
536              if ( sdh.obstype == "" ) sdh.obstype = obstype ;
537
538              Int nrow = t5.nrow() ;
539              //time1 = gettimeofday_sec() ;
540              //os_ << "end 5th iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
541
542              uInt cycle = 0 ;
543
544              Cube<Float> spArr ;
545              Cube<Bool> flArr ;
546              reshapeSpectraAndFlagtra( spArr,
547                                        flArr,
548                                        t5,
549                                        npol,
550                                        nchan,
551                                        nrow,
552                                        corrtype ) ;
553              if ( sdh.fluxunit == "" ) {
554                String colName = "FLOAT_DATA" ;
555                if ( isData_ ) colName = "DATA" ;
556                ROTableColumn dataCol( t5, colName ) ;
557                const TableRecord &dataColKeys = dataCol.keywordSet() ;
558                if ( dataColKeys.isDefined( "UNIT" ) )
559                  sdh.fluxunit = dataColKeys.asString( "UNIT" ) ;
560                else if ( dataColKeys.isDefined( "QuantumUnits" ) )
561                  sdh.fluxunit = dataColKeys.asString( "QuantumUnits" ) ;
562              }
563
564              ROScalarMeasColumn<MEpoch> *mTimeCol = new ROScalarMeasColumn<MEpoch>( t5, "TIME" ) ;
565              Block<MEpoch> mTimeB( nrow ) ;
566              for ( Int irow = 0 ; irow < nrow ; irow++ )
567                mTimeB[irow] = (*mTimeCol)( irow ) ;
568//               ROTableColumn *mIntervalCol = tpoolr->construct( t5, "INTERVAL" ) ;
569//               ROTableColumn *mFlagRowCol = tpoolr->construct( t5, "FLAG_ROW" ) ;
570              Block<Int> sysCalIdx( nrow, -1 ) ;
571              if ( isSysCal_ ) {
572                getSysCalTime( scTime, scInterval, mTimeB, sysCalIdx ) ;
573              }
574              delete mTimeCol ;
575              Matrix<Float> defaulttsys( npol, 1, 1.0 ) ;
576              Int srcType = getSrcType( stateId, tpoolr ) ;
577              uInt diridx = 0 ;
578              uInt wid = 0 ;
579              Int pidx = 0 ;
580              Bool crossOK = False ;
581              Block<uInt> polnos( npol, 99 ) ;
582              for ( Int ipol = 0 ; ipol < npol ; ipol++ ) {
583                Block<uInt> p = getPolNo( corrtype[ipol] ) ;
584                if ( p.size() > 1 ) {
585                  if ( crossOK ) continue ;
586                  else {
587                    polnos[pidx] = p[0] ;
588                    pidx++ ;
589                    polnos[pidx] = p[1] ;
590                    pidx++ ;
591                    crossOK = True ;
592                  }
593                }
594                else {
595                  polnos[pidx] = p[0] ;
596                  pidx++ ;
597                }
598              }
599             
600              // SRCTYPE
601              *srctypeRF = srcType ;
602
603              for ( Int irow = 0 ; irow < nrow ; irow++ ) {
604                // CYCLENO
605                *cycleRF = cycle ;
606
607                // FLAGROW
608//                 *flrRF = (uInt)mFlagRowCol->asBool( irow ) ;
609                *flrRF = (uInt)asBool( "FLAG_ROW", irow, t5, tpoolr ) ;
610
611                // SPECTRA, FLAG
612                Matrix<Float> sp = spArr.xyPlane( irow ) ;
613                Matrix<Bool> flb = flArr.xyPlane( irow ) ;
614                Matrix<uChar> fl( flb.shape() ) ;
615                convertArray( fl, flb ) ;
616
617                // TIME
618                *timeRF = mTimeB[irow].get("d").getValue() ;
619
620                // INTERVAL
621//                 *intervalRF = (Double)(mIntervalCol->asdouble( irow )) ;
622                *intervalRF = asDouble( "INTERVAL", irow, t5, tpoolr ) ;
623
624                // TSYS
625                Matrix<Float> tsys ;
626                if ( sysCalIdx[irow] != -1 && colTsys_ != "NONE" )
627                  tsys = scTsysCol( sysCalIdx[irow] ) ;
628                else
629                  tsys = defaulttsys ;
630
631                // TCAL_ID
632                Block<uInt> tcalids( npol, 0 ) ;
633                if ( sysCalIdx[irow] != -1 && colTcal_ != "NONE" ) {
634                  tcalids = getTcalId( feedId, spwId, scTime[sysCalIdx[irow]] ) ;
635                }
636
637                // WEATHER_ID
638                if ( isWeather_ ) {
639                  wid = getWeatherId( wid, mTimeB[irow].get("s").getValue() ) ;
640                  *widRF = mwIndex_[wid] ;
641                }
642                else {
643                  *widRF = wid ;
644                }
645                 
646
647                // DIRECTION, AZEL, SCANRATE
648                Vector<Double> dir ;
649                Vector<Double> azel ;
650                Vector<Double> scanrate ;
651                String refString ;
652                if ( getPt_ )
653                  //diridx = getDirection( diridx, dir, azel, scanrate, pointtab, mTimeB[irow], mp ) ;
654                  diridx = getDirection( diridx, dir, azel, scanrate, ptcol, pdcol, mTimeB[irow], mp ) ;
655                else
656                  getSourceDirection( dir, azel, scanrate, mTimeB[irow], mp, delayDir ) ;
657                *dirRF = dir ;
658                *azRF = azel[0] ;
659                *elRF = azel[1] ;
660                *scrRF = scanrate ;
661
662                // Polarization dependent things
663                for ( Int ipol = 0 ; ipol < npol ; ipol++ ) {
664                  // POLNO
665                  *polnoRF = polnos[ipol] ;
666
667                  spRF.define( sp.row( ipol ) ) ;
668                  ucarrRF.define( fl.row( ipol ) ) ;
669                  tsysRF.define( tsys.row( ipol ) ) ;
670                  *tcalidRF = tcalids[ipol] ;
671
672                  // Commit row
673                  stab.addRow() ;
674                  row.put( stab.nrow()-1 ) ;
675                }
676
677                cycle++ ;
678              }
679             
680              //time1 = gettimeofday_sec() ;
681              //os_ << "end 5th iteration: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
682
683              iter5.next() ;
684            }
685            iter4.next() ;
686          }
687          iter3.next() ;
688        }
689        iter2.next() ;
690      }
691      iter1.next() ;
692    }
693    if ( sdh.nbeam < nbeam ) sdh.nbeam = nbeam ;
694
695    iter0.next() ;
696  }
697
698
699  delete tpoolr ;
700
701
702  // Table Keywords
703  sdh.nif = ifmap.size() ;
704  if ( ( telescopeName == "" ) || ( antennaName == telescopeName ) ) {
705    sdh.antennaname = antennaName ;
706  }
707  else {
708    sdh.antennaname = telescopeName + "//" + antennaName ;
709  }
710  if ( stationName != "" && stationName != antennaName ) {
711    sdh.antennaname += "@" + stationName ;
712  }
713  ROArrayColumn<Double> pdirCol( pointtab, "DIRECTION" ) ;
714  String dirref = pdirCol.keywordSet().asRecord("MEASINFO").asString("Ref") ;
715  if ( dirref == "AZELGEO" || dirref == "AZEL" ) {
716    dirref = "J2000" ;
717  }
718  sscanf( dirref.chars()+1, "%f", &sdh.equinox ) ;
719  sdh.epoch = "UTC" ;
720  if (sdh.freqref == "TOPO") {
721    sdh.freqref = "TOPOCENT";
722  } else if (sdh.freqref == "GEO") {
723    sdh.freqref = "GEOCENTR";
724  } else if (sdh.freqref == "BARY") {
725    sdh.freqref = "BARYCENT";
726  } else if (sdh.freqref == "GALACTO") {
727    sdh.freqref = "GALACTOC";
728  } else if (sdh.freqref == "LGROUP") {
729    sdh.freqref = "LOCALGRP";
730  } else if (sdh.freqref == "CMB") {
731    sdh.freqref = "CMBDIPOL";
732  } else if (sdh.freqref == "REST") {
733    sdh.freqref = "SOURCE";
734  }
735
736  if ( sdh.fluxunit == "" || sdh.fluxunit == "CNTS" )
737    sdh.fluxunit = "K" ;
738  table_->setHeader( sdh ) ;
739
740  // save path to POINTING table
741  // 2011/07/06 TN
742  // Path to POINTING table in original MS will not be written
743  // if getPt_ is True
744  Path datapath( tablename_ ) ;
745  if ( !getPt_ ) {
746    String pTabName = datapath.absoluteName() + "/POINTING" ;
747    stab.rwKeywordSet().define( "POINTING", pTabName ) ;
748  }
749
750  // for GBT
751  if ( antennaName.contains( "GBT" ) ) {
752    String goTabName = datapath.absoluteName() + "/GBT_GO" ;
753    stab.rwKeywordSet().define( "GBT_GO", goTabName ) ;
754  }
755
756  // for MS created from ASDM
757  //mstable_.keywordSet().print(cout) ;
758  const TableRecord &msKeys = mstable_.keywordSet() ;
759  uInt nfields = msKeys.nfields() ;
760  for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) {
761    String name = msKeys.name( ifield ) ;
762    //os_ << "name = " << name << LogIO::POST ;
763    if ( name.find( "ASDM" ) != String::npos ) {
764      String asdmpath = msKeys.asTable( ifield ).tableName() ;
765      os_ << "ASDM table: " << asdmpath << LogIO::POST ;
766      stab.rwKeywordSet().define( name, asdmpath ) ;
767    }
768  }
769
770  //double endSec = gettimeofday_sec() ;
771  //os_ << "end MSFiller::fill() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
772}
773
774void MSFiller::close()
775{
776  //tablesel_.closeSubTables() ;
777  mstable_.closeSubTables() ;
778  //tablesel_.unlock() ;
779  mstable_.unlock() ;
780}
781
782Int MSFiller::getSrcType( Int stateId, boost::object_pool<ROTableColumn> *tpool )
783{
784  //double startSec = gettimeofday_sec() ;
785  //os_ << "start MSFiller::getSrcType() startSec=" << startSec << LogIO::POST ;
786
787  MSState statetab = mstable_.state() ;
788  String obsMode = asString( "OBS_MODE", stateId, statetab, tpool ) ;
789  Bool sig = asBool( "SIG", stateId, statetab, tpool ) ;
790  Bool ref = asBool( "REF", stateId, statetab, tpool ) ;
791  Double cal = asDouble( "CAL", stateId, statetab, tpool ) ;
792  //os_ << "OBS_MODE = " << obsMode << LogIO::POST ;
793
794  // determine separator
795  String sep = "" ;
796  String tmpStr = obsMode.substr( 0, obsMode.find_first_of( "," ) ) ;
797  //os_ << "tmpStr = " << tmpStr << LogIO::POST ;
798  //if ( obsMode.find( ":" ) != String::npos ) {
799  if ( tmpStr.find( ":" ) != String::npos ) {
800    sep = ":" ;
801  }
802  //else if ( obsMode.find( "." ) != String::npos ) {
803  else if ( tmpStr.find( "." ) != String::npos ) {
804    sep = "." ;
805  }
806  else if ( tmpStr.find( "#" ) != String::npos ) {
807    sep = "#" ;
808  }
809  //else if ( obsMode.find( "_" ) != String::npos ) {
810  else if ( tmpStr.find( "_" ) != String::npos ) {
811    sep = "_" ;
812  }
813  //os_ << "separator = " << sep << LogIO::POST ;
814
815  // determine SRCTYPE
816  Int srcType = SrcType::NOTYPE ;
817  if ( sep == ":" ) {
818    // sep == ":"
819    //
820    // GBT case
821    //
822    // obsMode1=Nod
823    //    NOD
824    // obsMode1=OffOn
825    //    obsMode2=PSWITCHON:  PSON
826    //    obsMode2=PSWITCHOFF: PSOFF
827    // obsMode1=??
828    //    obsMode2=FSWITCH:
829    //       SIG=1: FSON
830    //       REF=1: FSOFF
831    // Calibration scan if CAL != 0
832    Int epos = obsMode.find_first_of( sep ) ;
833    Int nextpos = obsMode.find_first_of( sep, epos+1 ) ;
834    String obsMode1 = obsMode.substr( 0, epos ) ;
835    String obsMode2 = obsMode.substr( epos+1, nextpos-epos-1 ) ;
836    if ( obsMode1 == "Nod" ) {
837      srcType = SrcType::NOD ;
838    }
839    else if ( obsMode1 == "OffOn" ) {
840      if ( obsMode2 == "PSWITCHON" ) srcType = SrcType::PSON ;
841      if ( obsMode2 == "PSWITCHOFF" ) srcType = SrcType::PSOFF ;
842    }
843    else {
844      if ( obsMode2 == "FSWITCH" ) {
845        if ( sig ) srcType = SrcType::FSON ;
846        if ( ref ) srcType = SrcType::FSOFF ;
847      }
848    }
849    if ( cal > 0.0 ) {
850      if ( srcType == SrcType::NOD )
851        srcType = SrcType::NODCAL ;
852      else if ( srcType == SrcType::PSON )
853        srcType = SrcType::PONCAL ;
854      else if ( srcType == SrcType::PSOFF )
855        srcType = SrcType::POFFCAL ;
856      else if ( srcType == SrcType::FSON )
857        srcType = SrcType::FONCAL ;
858      else if ( srcType == SrcType::FSOFF )
859        srcType = SrcType::FOFFCAL ;
860      else
861        srcType = SrcType::CAL ;
862    }
863  }
864  else if ( sep == "." || sep == "#" ) {
865    // sep == "." or "#"
866    //
867    // ALMA & EVLA case (MS via ASDM) before3.1
868    //
869    // obsMode1=CALIBRATE_*
870    //    obsMode2=ON_SOURCE: PONCAL
871    //    obsMode2=OFF_SOURCE: POFFCAL
872    // obsMode1=OBSERVE_TARGET
873    //    obsMode2=ON_SOURCE: PON
874    //    obsMode2=OFF_SOURCE: POFF
875    string substr[2] ;
876    int numSubstr = split( obsMode, substr, 2, "," ) ;
877    //os_ << "numSubstr = " << numSubstr << LogIO::POST ;
878    //for ( int i = 0 ; i < numSubstr ; i++ )
879    //os_ << "substr[" << i << "] = " << substr[i] << LogIO::POST ;
880    String obsType( substr[0] ) ;
881    //os_ << "obsType = " << obsType << LogIO::POST ;
882    Int epos = obsType.find_first_of( sep ) ;
883    Int nextpos = obsType.find_first_of( sep, epos+1 ) ;
884    String obsMode1 = obsType.substr( 0, epos ) ;
885    String obsMode2 = obsType.substr( epos+1, nextpos-epos-1 ) ;
886    //os_ << "obsMode1 = " << obsMode1 << LogIO::POST ;
887    //os_ << "obsMode2 = " << obsMode2 << LogIO::POST ;
888    if ( obsMode1.find( "CALIBRATE_" ) == 0 ) {
889      if ( obsMode2 == "ON_SOURCE" ) srcType = SrcType::PONCAL ;
890      if ( obsMode2 == "OFF_SOURCE" ) srcType = SrcType::POFFCAL ;
891    }
892    else if ( obsMode1 == "OBSERVE_TARGET" ) {
893      if ( obsMode2 == "ON_SOURCE" ) srcType = SrcType::PSON ;
894      if ( obsMode2 == "OFF_SOURCE" ) srcType = SrcType::PSOFF ;
895    }
896  }
897  else if ( sep == "_" ) {
898    // sep == "_"
899    //
900    // ALMA & EVLA case (MS via ASDM) after 3.2
901    //
902    // obsMode1=CALIBRATE_*
903    //    obsMode2=ON_SOURCE: PONCAL
904    //    obsMode2=OFF_SOURCE: POFFCAL
905    // obsMode1=OBSERVE_TARGET
906    //    obsMode2=ON_SOURCE: PON
907    //    obsMode2=OFF_SOURCE: POFF
908    string substr[2] ;
909    int numSubstr = split( obsMode, substr, 2, "," ) ;
910    //os_ << "numSubstr = " << numSubstr << LogIO::POST ;
911    //for ( int i = 0 ; i < numSubstr ; i++ )
912    //os_ << "substr[" << i << "] = " << substr[i] << LogIO::POST ;
913    String obsType( substr[0] ) ;
914    //os_ << "obsType = " << obsType << LogIO::POST ;
915    string substr2[4] ;
916    int numSubstr2 = split( obsType, substr2, 4, sep ) ;
917    //Int epos = obsType.find_first_of( sep ) ;
918    //Int nextpos = obsType.find_first_of( sep, epos+1 ) ;
919    //String obsMode1 = obsType.substr( 0, epos ) ;
920    //String obsMode2 = obsType.substr( epos+1, nextpos-epos-1 ) ;
921    String obsMode1( substr2[0] ) ;
922    String obsMode2( substr2[2] ) ;
923    //os_ << "obsMode1 = " << obsMode1 << LogIO::POST ;
924    //os_ << "obsMode2 = " << obsMode2 << LogIO::POST ;
925    if ( obsMode1.find( "CALIBRATE" ) == 0 ) {
926      if ( obsMode2 == "ON" ) srcType = SrcType::PONCAL ;
927      if ( obsMode2 == "OFF" ) srcType = SrcType::POFFCAL ;
928    }
929    else if ( obsMode1 == "OBSERVE" ) {
930      if ( obsMode2 == "ON" ) srcType = SrcType::PSON ;
931      if ( obsMode2 == "OFF" ) srcType = SrcType::PSOFF ;
932    }
933  }
934  else {
935    if ( sig ) srcType = SrcType::SIG ;
936    if ( ref ) srcType = SrcType::REF ;
937  }
938   
939  //os_ << "srcType = " << srcType << LogIO::POST ;
940  //double endSec = gettimeofday_sec() ;
941  //os_ << "end MSFiller::getSrcType() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
942  return srcType ;
943}
944
945//Vector<uInt> MSFiller::getPolNo( Int corrType )
946Block<uInt> MSFiller::getPolNo( Int corrType )
947{
948  //double startSec = gettimeofday_sec() ;
949  //os_ << "start MSFiller::getPolNo() startSec=" << startSec << LogIO::POST ;
950  Block<uInt> polno( 1 ) ;
951
952  if ( corrType == Stokes::I || corrType == Stokes::RR || corrType == Stokes::XX ) {
953    polno = 0 ;
954  }
955  else if ( corrType == Stokes::Q || corrType == Stokes::LL || corrType == Stokes::YY ) {
956    polno = 1 ;
957  }
958  else if ( corrType == Stokes::U ) {
959    polno = 2 ;
960  }
961  else if ( corrType == Stokes::V ) {
962    polno = 3 ;
963  }
964  else if ( corrType == Stokes::RL || corrType == Stokes::XY || corrType == Stokes::LR || corrType == Stokes::RL ) {
965    polno.resize( 2 ) ;
966    polno[0] = 2 ;
967    polno[1] = 3 ;
968  }
969  else if ( corrType == Stokes::Plinear ) {
970    polno[0] = 1 ;
971  }
972  else if ( corrType == Stokes::Pangle ) {
973    polno[0] = 2 ;
974  }
975  else {
976    polno = 99 ;
977  }
978  //os_ << "polno = " << polno << LogIO::POST ;
979  //double endSec = gettimeofday_sec() ;
980  //os_ << "end MSFiller::getPolNo() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
981 
982  return polno ;
983}
984
985String MSFiller::getPolType( Int corrType )
986{
987  //double startSec = gettimeofday_sec() ;
988  //os_ << "start MSFiller::getPolType() startSec=" << startSec << LogIO::POST ;
989  String poltype = "" ;
990
991  if ( corrType == Stokes::I || corrType == Stokes::Q || corrType == Stokes::U || corrType == Stokes::V )
992    poltype = "stokes" ;
993  else if ( corrType == Stokes::XX || corrType == Stokes::YY || corrType == Stokes::XY || corrType == Stokes::YX )
994    poltype = "linear" ;
995  else if ( corrType == Stokes::RR || corrType == Stokes::LL || corrType == Stokes::RL || corrType == Stokes::LR )
996    poltype = "circular" ;
997  else if ( corrType == Stokes::Plinear || corrType == Stokes::Pangle )
998    poltype = "linpol" ;
999
1000  //double endSec = gettimeofday_sec() ;
1001  //os_ << "end MSFiller::getPolType() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1002  return poltype ;
1003}
1004
1005void MSFiller::fillWeather()
1006{
1007  //double startSec = gettimeofday_sec() ;
1008  //os_ << "start MSFiller::fillWeather() startSec=" << startSec << LogIO::POST ;
1009
1010  if ( !isWeather_ ) {
1011    // add dummy row
1012    table_->weather().table().addRow(1,True) ;
1013    return ;
1014  }
1015
1016  Table mWeather = mstable_.weather()  ;
1017  //Table mWeatherSel = mWeather( mWeather.col("ANTENNA_ID") == antenna_ ).sort("TIME") ;
1018  Table mWeatherSel( mWeather( mWeather.col("ANTENNA_ID") == antenna_ ).sort("TIME") ) ;
1019  //os_ << "mWeatherSel.nrow() = " << mWeatherSel.nrow() << LogIO::POST ;
1020  if ( mWeatherSel.nrow() == 0 ) {
1021    os_ << "No rows with ANTENNA_ID = " << antenna_ << " in WEATHER table, Try -1..." << LogIO::POST ;
1022    mWeatherSel = Table( MSWeather( mWeather( mWeather.col("ANTENNA_ID") == -1 ) ) ) ;
1023    if ( mWeatherSel.nrow() == 0 ) {
1024      os_ << "No rows in WEATHER table" << LogIO::POST ;
1025    }
1026  }
1027  uInt wnrow = mWeatherSel.nrow() ;
1028  //os_ << "wnrow = " << wnrow << LogIO::POST ;
1029
1030  if ( wnrow == 0 )
1031    return ;
1032
1033  Table wtab = table_->weather().table() ;
1034  wtab.addRow( wnrow ) ;
1035
1036  Bool stationInfoExists = mWeatherSel.tableDesc().isColumn( "NS_WX_STATION_ID" ) ;
1037  Int stationId = -1 ;
1038  if ( stationInfoExists ) {
1039    // determine which station is closer
1040    ROScalarColumn<Int> stationCol( mWeatherSel, "NS_WX_STATION_ID" ) ;
1041    ROArrayColumn<Double> stationPosCol( mWeatherSel, "NS_WX_STATION_POSITION" ) ;
1042    Vector<Int> stationIds = stationCol.getColumn() ;
1043    Vector<Int> stationIdList( 0 ) ;
1044    Matrix<Double> stationPosList( 0, 3, 0.0 ) ;
1045    uInt numStation = 0 ;
1046    for ( uInt i = 0 ; i < stationIds.size() ; i++ ) {
1047      if ( !anyEQ( stationIdList, stationIds[i] ) ) {
1048        numStation++ ;
1049        stationIdList.resize( numStation, True ) ;
1050        stationIdList[numStation-1] = stationIds[i] ;
1051        stationPosList.resize( numStation, 3, True ) ;
1052        stationPosList.row( numStation-1 ) = stationPosCol( i ) ;
1053      }
1054    }
1055    //os_ << "staionIdList = " << stationIdList << endl ;
1056    Table mAntenna = mstable_.antenna() ;
1057    ROArrayColumn<Double> antposCol( mAntenna, "POSITION" ) ;
1058    Vector<Double> antpos = antposCol( antenna_ ) ;
1059    Double minDiff = -1.0 ;
1060    for ( uInt i = 0 ; i < stationIdList.size() ; i++ ) {
1061      Double diff = sum( square( antpos - stationPosList.row( i ) ) ) ;
1062      if ( minDiff < 0.0 || minDiff > diff ) {
1063        minDiff = diff ;
1064        stationId = stationIdList[i] ;
1065      }
1066    }
1067  }
1068  //os_ << "stationId = " << stationId << endl ;
1069 
1070  ScalarColumn<Float> *fCol ;
1071  ROScalarColumn<Float> *sharedFloatCol ;
1072  if ( mWeatherSel.tableDesc().isColumn( "TEMPERATURE" ) ) {
1073    fCol = new ScalarColumn<Float>( wtab, "TEMPERATURE" ) ;
1074    sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "TEMPERATURE" ) ;
1075    fCol->putColumn( *sharedFloatCol ) ;
1076    delete sharedFloatCol ;
1077    delete fCol ;
1078  }
1079  if ( mWeatherSel.tableDesc().isColumn( "PRESSURE" ) ) {
1080    fCol = new ScalarColumn<Float>( wtab, "PRESSURE" ) ;
1081    sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "PRESSURE" ) ;
1082    fCol->putColumn( *sharedFloatCol ) ;
1083    delete sharedFloatCol ;
1084    delete fCol ;
1085  }
1086  if ( mWeatherSel.tableDesc().isColumn( "REL_HUMIDITY" ) ) {
1087    fCol = new ScalarColumn<Float>( wtab, "HUMIDITY" ) ;
1088    sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "REL_HUMIDITY" ) ;
1089    fCol->putColumn( *sharedFloatCol ) ;
1090    delete sharedFloatCol ;
1091    delete fCol ;
1092  }
1093  if ( mWeatherSel.tableDesc().isColumn( "WIND_SPEED" ) ) { 
1094    fCol = new ScalarColumn<Float>( wtab, "WINDSPEED" ) ;
1095    sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "WIND_SPEED" ) ;
1096    fCol->putColumn( *sharedFloatCol ) ;
1097    delete sharedFloatCol ;
1098    delete fCol ;
1099  }
1100  if ( mWeatherSel.tableDesc().isColumn( "WIND_DIRECTION" ) ) {
1101    fCol = new ScalarColumn<Float>( wtab, "WINDAZ" ) ;
1102    sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "WIND_DIRECTION" ) ;
1103    fCol->putColumn( *sharedFloatCol ) ;
1104    delete sharedFloatCol ;
1105    delete fCol ;
1106  }
1107  ScalarColumn<uInt> idCol( wtab, "ID" ) ;
1108  for ( uInt irow = 0 ; irow < wnrow ; irow++ )
1109    idCol.put( irow, irow ) ;
1110
1111  ROScalarQuantColumn<Double> tqCol( mWeatherSel, "TIME" ) ;
1112  ROScalarColumn<Double> tCol( mWeatherSel, "TIME" ) ;
1113  String tUnit = tqCol.getUnits() ;
1114  Vector<Double> mwTime = tCol.getColumn() ;
1115  if ( tUnit == "d" )
1116    mwTime *= 86400.0 ;
1117  tqCol.attach( mWeatherSel, "INTERVAL" ) ;
1118  tCol.attach( mWeatherSel, "INTERVAL" ) ;
1119  String iUnit = tqCol.getUnits() ;
1120  Vector<Double> mwInterval = tCol.getColumn() ;
1121  if ( iUnit == "d" )
1122    mwInterval *= 86400.0 ;
1123
1124  if ( stationId > 0 ) {
1125    ROScalarColumn<Int> stationCol( mWeatherSel, "NS_WX_STATION_ID" ) ;
1126    Vector<Int> stationVec = stationCol.getColumn() ;
1127    uInt wsnrow = ntrue( stationVec == stationId ) ;
1128    mwTime_.resize( wsnrow ) ;
1129    mwInterval_.resize( wsnrow ) ;
1130    mwIndex_.resize( wsnrow ) ;
1131    uInt wsidx = 0 ;
1132    for ( uInt irow = 0 ; irow < wnrow ; irow++ ) {
1133      if ( stationId == stationVec[irow] ) {
1134        mwTime_[wsidx] = mwTime[irow] ;
1135        mwInterval_[wsidx] = mwInterval[irow] ;
1136        mwIndex_[wsidx] = irow ;
1137        wsidx++ ;
1138      }
1139    }
1140  }
1141  else {
1142    mwTime_ = mwTime ;
1143    mwInterval_ = mwInterval ;
1144    mwIndex_.resize( mwTime_.size() ) ;
1145    indgen( mwIndex_ ) ;
1146  }
1147  //os_ << "mwTime[0] = " << mwTime_[0] << " mwInterval[0] = " << mwInterval_[0] << LogIO::POST ;
1148  //double endSec = gettimeofday_sec() ;
1149  //os_ << "end MSFiller::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1150}
1151
1152void MSFiller::fillFocus()
1153{
1154  //double startSec = gettimeofday_sec() ;
1155  //os_ << "start MSFiller::fillFocus() startSec=" << startSec << LogIO::POST ;
1156  // tentative
1157  table_->focus().addEntry( 0.0, 0.0, 0.0, 0.0 ) ;
1158  //double endSec = gettimeofday_sec() ;
1159  //os_ << "end MSFiller::fillFocus() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1160}
1161
1162void MSFiller::fillTcal( boost::object_pool<ROTableColumn> *tpoolr )
1163{
1164  //double startSec = gettimeofday_sec() ;
1165  //os_ << "start MSFiller::fillTcal() startSec=" << startSec << LogIO::POST ;
1166
1167  if ( !isSysCal_ ) {
1168    // add dummy row
1169    os_ << "No SYSCAL rows" << LogIO::POST ;
1170    table_->tcal().table().addRow(1,True) ;
1171    Vector<Float> defaultTcal( 1, 1.0 ) ;
1172    ArrayColumn<Float> tcalCol( table_->tcal().table(), "TCAL" ) ;
1173    tcalCol.put( 0, defaultTcal ) ;
1174    return ;
1175  }
1176
1177  if ( colTcal_ == "NONE" ) {
1178    // add dummy row
1179    os_ << "No TCAL column" << LogIO::POST ;
1180    table_->tcal().table().addRow(1,True) ;
1181    Vector<Float> defaultTcal( 1, 1.0 ) ;
1182    ArrayColumn<Float> tcalCol( table_->tcal().table(), "TCAL" ) ;
1183    tcalCol.put( 0, defaultTcal ) ;
1184    return ;
1185  }
1186
1187  Table sctab = mstable_.sysCal() ;
1188  if ( sctab.nrow() == 0 ) {
1189    os_ << "No SYSCAL rows" << LogIO::POST ;
1190    return ;
1191  }
1192  Table sctabsel( sctab( sctab.col("ANTENNA_ID") == antenna_ ) ) ;
1193  if ( sctabsel.nrow() == 0 ) {
1194    os_ << "No SYSCAL rows" << LogIO::POST ;
1195    return ;
1196  }
1197  ROArrayColumn<Float> *tmpTcalCol = new ROArrayColumn<Float>( sctabsel, colTcal_ ) ;
1198  // return if any rows without Tcal value exists
1199  Bool notDefined = False ;
1200  for ( uInt irow = 0 ; irow < sctabsel.nrow() ; irow++ ) {
1201    if ( !tmpTcalCol->isDefined( irow ) ) {
1202      notDefined = True ;
1203      break ;
1204    }
1205  }
1206  if ( notDefined ) {
1207    os_ << "No TCAL value" << LogIO::POST ;
1208    delete tmpTcalCol ;
1209    table_->tcal().table().addRow(1,True) ;
1210    Vector<Float> defaultTcal( 1, 1.0 ) ;
1211    ArrayColumn<Float> tcalCol( table_->tcal().table(), "TCAL" ) ;
1212    tcalCol.put( 0, defaultTcal ) ;
1213    return ;
1214  }   
1215  uInt npol = tmpTcalCol->shape( 0 )(0) ;
1216  delete tmpTcalCol ;
1217  //os_ << "fillTcal(): npol = " << npol << LogIO::POST ;
1218  Table tab = table_->tcal().table() ;
1219  ArrayColumn<Float> tcalCol( tab, "TCAL" ) ;
1220  uInt oldnr = 0 ;
1221  uInt newnr = 0 ;
1222  TableRow row( tab ) ;
1223  TableRecord &trec = row.record() ;
1224  RecordFieldPtr<uInt> idRF( trec, "ID" ) ;
1225  RecordFieldPtr<String> timeRF( trec, "TIME" ) ;
1226  RecordFieldPtr< Array<Float> > tcalRF( trec, "TCAL" ) ;
1227  TableIterator iter0( sctabsel, "FEED_ID" ) ;
1228  while( !iter0.pastEnd() ) {
1229    Table t0 = iter0.table() ;
1230    Int feedId = asInt( "FEED_ID", 0, t0, tpoolr ) ;
1231    TableIterator iter1( t0, "SPECTRAL_WINDOW_ID" ) ;
1232    while( !iter1.pastEnd() ) {
1233      Table t1 = iter1.table() ;
1234      Int spwId = asInt( "SPECTRAL_WINDOW_ID", 0, t1, tpoolr ) ;
1235      tmpTcalCol = new ROArrayColumn<Float>( t1, colTcal_ ) ;
1236      ROScalarQuantColumn<Double> scTimeCol( t1, "TIME" ) ;
1237      Vector<uInt> idminmax( 2, oldnr ) ;
1238      for ( uInt irow = 0 ; irow < t1.nrow() ; irow++ ) {
1239        String sTime = MVTime( scTimeCol(irow) ).string( MVTime::YMD ) ;
1240        *timeRF = sTime ;
1241        uInt idx = oldnr ;
1242        Matrix<Float> subtcal = (*tmpTcalCol)( irow ) ;
1243        for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) {
1244          *idRF = idx++ ;
1245          //*tcalRF = subtcal.row( ipol ) ;
1246          tcalRF.define( subtcal.row( ipol ) ) ;
1247
1248          // commit row
1249          tab.addRow() ;
1250          row.put( tab.nrow()-1 ) ;
1251
1252          newnr++ ;
1253        }
1254        idminmax[0] = oldnr ;
1255        idminmax[1] = newnr - 1 ;
1256        oldnr = newnr ;
1257
1258        String key = keyTcal( feedId, spwId, sTime ) ;
1259        tcalrec_.define( key, idminmax ) ;
1260      }
1261      delete tmpTcalCol ;
1262      iter1++ ;
1263    }
1264    iter0++ ;
1265  }
1266
1267  //tcalrec_.print( std::cout ) ;
1268  //double endSec = gettimeofday_sec() ;
1269  //os_ << "end MSFiller::fillTcal() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1270}
1271
1272uInt MSFiller::getWeatherId( uInt idx, Double wtime )
1273{
1274  //double startSec = gettimeofday_sec() ;
1275  //os_ << "start MSFiller::getWeatherId() startSec=" << startSec << LogIO::POST ;
1276  uInt nrow = mwTime_.size() ;
1277  if ( nrow < 2 )
1278    return 0 ;
1279  uInt wid = nrow ;
1280  if ( idx == 0 ) {
1281    wid = 0 ;
1282    Double tStart = mwTime_[wid]-0.5*mwInterval_[wid] ;
1283    if ( wtime < tStart )
1284      return wid ;
1285  }
1286  for ( uInt i = idx ; i < nrow-1 ; i++ ) {
1287    Double tStart = mwTime_[i]-0.5*mwInterval_[i] ;
1288    // use of INTERVAL column is problematic
1289    // since there are "blank" time of weather monitoring
1290    //Double tEnd = tStart + mwInterval_[i] ;
1291    Double tEnd = mwTime_[i+1]-0.5*mwInterval_[i+1] ;
1292    //os_ << "tStart = " << tStart << " dtEnd = " << tEnd-tStart << " dwtime = " << wtime-tStart << LogIO::POST ;
1293    if ( wtime >= tStart && wtime <= tEnd ) {
1294      wid = i ;
1295      break ;
1296    }
1297  }
1298  if ( wid == nrow ) {
1299    uInt i = nrow - 1 ;
1300    Double tStart = mwTime_[i-1]+0.5*mwInterval_[i-1] ;
1301    Double tEnd = mwTime_[i]+0.5*mwInterval_[i] ;
1302    //os_ << "tStart = " << tStart << " dtEnd = " << tEnd-tStart << " dwtime = " << wtime-tStart << LogIO::POST ;
1303    if ( wtime >= tStart && wtime <= tEnd )
1304      wid = i-1 ;
1305    else
1306      wid = i ;
1307  }
1308
1309  //if ( wid == nrow )
1310  //os_ << LogIO::WARN << "Couldn't find correct WEATHER_ID for time " << wtime << LogIO::POST ;
1311
1312  //double endSec = gettimeofday_sec() ;
1313  //os_ << "end MSFiller::getWeatherId() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1314  return wid ;
1315}
1316
1317void MSFiller::getSysCalTime( Vector<MEpoch> &scTime, Vector<Double> &scInterval, Block<MEpoch> &tcol, Block<Int> &tidx )
1318{
1319  //double startSec = gettimeofday_sec() ;
1320  //os_ << "start MSFiller::getSysCalTime() startSec=" << startSec << LogIO::POST ;
1321
1322  if ( !isSysCal_ )
1323    return ;
1324
1325  uInt nrow = tidx.nelements() ;
1326  if ( scTime.nelements() == 0 )
1327    return ;
1328  else if ( scTime.nelements() == 1 ) {
1329    tidx[0] = 0 ;
1330    return ;
1331  }
1332  uInt scnrow = scTime.nelements() ;
1333  uInt idx = 0 ;
1334  const Double half = 0.5e0 ;
1335  // execute  binary search
1336  idx = binarySearch( scTime, tcol[0].get( "s" ).getValue() ) ;
1337  if ( idx != 0 )
1338    idx -= 1 ;
1339  for ( uInt i = 0 ; i < nrow ; i++ ) {
1340    Double t = tcol[i].get( "s" ).getValue() ;
1341    Double tsc = scTime[0].get( "s" ).getValue() ;
1342    if ( t < tsc ) {
1343      tidx[i] = 0 ;
1344      continue ;
1345    }
1346    for ( uInt j = idx ; j < scnrow-1 ; j++ ) {
1347      Double tsc1 = scTime[j].get( "s" ).getValue() ;
1348      Double dt1 = scInterval[j] ;
1349      Double tsc2 = scTime[j+1].get( "s" ).getValue() ;
1350      Double dt2 = scInterval[j+1] ;
1351      if ( t > tsc1-half*dt1 && t <= tsc2-half*dt2 ) {
1352        tidx[i] = j ;
1353        idx = j ;
1354        break ;
1355      }
1356    }
1357    if ( tidx[i] == -1 ) {
1358//       Double tsc = scTime[scnrow-1].get( "s" ).getValue() ;
1359//       Double dt = scInterval[scnrow-1] ;
1360//       if ( t <= tsc+0.5*dt ) {
1361//         tidx[i] = scnrow-1 ;
1362//       }
1363      tidx[i] = scnrow-1 ;
1364    }
1365  }
1366  //double endSec = gettimeofday_sec() ;
1367  //os_ << "end MSFiller::getSysCalTime() endSec=" << endSec << " (" << endSec-startSec << "sec) scnrow = " << scnrow << " tcol.nelements = " << tcol.nelements() << LogIO::POST ;
1368  return ;
1369}
1370
1371Block<uInt> MSFiller::getTcalId( Int fid, Int spwid, MEpoch &t )
1372{
1373  //double startSec = gettimeofday_sec() ;
1374  //os_ << "start MSFiller::getTcalId() startSec=" << startSec << LogIO::POST ;
1375  //if ( table_->tcal().table().nrow() == 0 ) {
1376  if ( !isSysCal_ ) {
1377    os_ << "No TCAL rows" << LogIO::POST ;
1378    Block<uInt> tcalids( 4, 0 ) ;
1379    return  tcalids ;
1380  }   
1381  //String sctime = MVTime( Quantum<Double>(t,"s") ).string(MVTime::YMD) ;
1382  String sctime = MVTime( t.getValue() ).string(MVTime::YMD) ;
1383  String key = keyTcal( fid, spwid, sctime ) ;
1384  if ( !tcalrec_.isDefined( key ) ) {
1385    os_ << "No TCAL rows" << LogIO::POST ;
1386    Block<uInt> tcalids( 4, 0 ) ;
1387    return tcalids ;
1388  }
1389  Vector<uInt> ids = tcalrec_.asArrayuInt( key ) ;
1390  uInt npol = ids[1] - ids[0] + 1 ;
1391  Block<uInt> tcalids( npol ) ;
1392  tcalids[0] = ids[0] ;
1393  tcalids[1] = ids[1] ;
1394  for ( uInt ipol = 2 ; ipol < npol ; ipol++ )
1395    tcalids[ipol] = ids[0] + ipol - 1 ;
1396
1397  //double endSec = gettimeofday_sec() ;
1398  //os_ << "end MSFiller::getTcalId() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1399  return tcalids ;
1400}
1401
1402uInt MSFiller::getDirection( uInt idx,
1403                             Vector<Double> &dir,
1404                             Vector<Double> &srate,
1405                             String &ref,
1406                             ROScalarColumn<Double> &tcol,
1407                             ROArrayColumn<Double> &dcol,
1408                             Double t )
1409{
1410  //double startSec = gettimeofday_sec() ;
1411  //os_ << "start MSFiller::getDirection1() startSec=" << startSec << LogIO::POST ;
1412  //double time0 = gettimeofday_sec() ;
1413  //os_ << "start getDirection 1st stage startSec=" << time0 << LogIO::POST ;
1414  // assume that cols is sorted by TIME
1415  Bool doInterp = False ;
1416  uInt nrow = tcol.nrow() ;
1417  if ( nrow == 0 )
1418    return 0 ;
1419  TableRecord trec = tcol.keywordSet() ;
1420  String tUnit = trec.asArrayString( "QuantumUnits" ).data()[0] ;
1421  Double factor = 1.0 ;
1422  if ( tUnit == "d" )
1423    factor = 86400.0 ;
1424  // binary search if idx == 0
1425  if ( idx == 0 ) {
1426    uInt nrowb = 1000 ;
1427    if ( nrow > nrowb ) {
1428      uInt nblock = nrow / nrowb + 1 ;
1429      for ( uInt iblock = 0 ; iblock < nblock ; iblock++ ) {
1430        uInt high = min( nrowb, nrow-iblock*nrowb ) ;
1431
1432        if ( tcol( high-1 ) * factor < t ) {
1433          idx = iblock * nrowb ;
1434          continue ;
1435        }
1436
1437        RefRows refrows( iblock*nrowb, iblock*nrowb+high, 1 ) ;
1438        Vector<Double> tarr = tcol.getColumnCells( refrows ) ;
1439        if ( tUnit == "d" )
1440          tarr *= factor ;
1441
1442        uInt bidx = binarySearch( tarr, t ) ;
1443
1444        idx = iblock * nrowb + bidx ;
1445        break ;
1446      }
1447    }
1448    else {
1449      Vector<Double> tarr = tcol.getColumn() ;
1450      if ( tUnit == "d" )
1451        tarr *= factor ;
1452      idx = binarySearch( tarr, t ) ;
1453    }
1454  }
1455  //double time1 = gettimeofday_sec() ;
1456  //os_ << "end getDirection 1st stage endSec=" << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
1457  // ensure that tcol(idx) < t
1458  //os_ << "tcol(idx) = " << tcol(idx).get("s").getValue() << " t = " << t << " diff = " << tcol(idx).get("s").getValue()-t << endl ;
1459  //time0 = gettimeofday_sec() ;
1460  //os_ << "start getDirection 2nd stage startSec=" << time0 << LogIO::POST ;
1461  while( tcol( idx ) * factor > t && idx > 0 )
1462    idx-- ;
1463  //os_ << "idx = " << idx << LogIO::POST ;
1464
1465  // index search
1466  for ( uInt i = idx ; i < nrow ; i++ ) {
1467    //Double tref = tcol( i ).get( "s" ).getValue() ;
1468    Double tref = tcol( i ) * factor ;
1469    if ( tref == t ) {
1470      idx = i ;
1471      break ;
1472    }
1473    else if ( tref > t ) {
1474      if ( i == 0 ) {
1475        idx = i ;
1476      }
1477      else {
1478        idx = i-1 ;
1479        doInterp = True ;
1480      }
1481      break ;
1482    }
1483    else {
1484      idx = nrow - 1 ;
1485    }
1486  }
1487  //time1 = gettimeofday_sec() ;
1488  //os_ << "end getDirection 2nd stage endSec=" << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
1489  //os_ << "searched idx = " << idx << LogIO::POST ;
1490
1491  //time0 = gettimeofday_sec() ;
1492  //os_ << "start getDirection 3rd stage startSec=" << time0 << LogIO::POST ;
1493  //os_ << "dmcol(idx).shape() = " << dmcol(idx).shape() << LogIO::POST ;
1494  //IPosition ip( dmcol(idx).shape().nelements(), 0 ) ;
1495  IPosition ip( dcol(idx).shape().nelements(), 0 ) ;
1496  //os_ << "ip = " << ip << LogIO::POST ;
1497  //ref = dmcol(idx)(ip).getRefString() ;
1498  trec = dcol.keywordSet() ;
1499  Record rec = trec.asRecord( "MEASINFO" ) ;
1500  ref = rec.asString( "Ref" ) ;
1501  //os_ << "ref = " << ref << LogIO::POST ;
1502  if ( doInterp ) {
1503    //os_ << "do interpolation" << LogIO::POST ;
1504    //os_ << "dcol(idx).shape() = " << dcol(idx).shape() << LogIO::POST ;
1505//     Double tref0 = tcol(idx).get("s").getValue() ;
1506//     Double tref1 = tcol(idx+1).get("s").getValue() ;
1507    Double tref0 = tcol(idx) * factor ;
1508    Double tref1 = tcol(idx+1) * factor ;
1509    Matrix<Double> mdir0 = dcol( idx ) ;
1510    Matrix<Double> mdir1 = dcol( idx+1 ) ;
1511    Vector<Double> dir0 = mdir0.column( 0 ) ;
1512    //os_ << "dir0 = " << dir0 << LogIO::POST ;
1513    Vector<Double> dir1 = mdir1.column( 0 ) ;
1514    //os_ << "dir1 = " << dir1 << LogIO::POST ;
1515    Double dt0 = t - tref0 ;
1516    Double dt1 = tref1 - t ;
1517    dir.reference( (dt0*dir1+dt1*dir0)/(dt0+dt1) ) ;
1518    if ( mdir0.ncolumn() > 1 ) {
1519      if ( dt0 >= dt1 )
1520        srate.reference( mdir0.column( 1 ) ) ;
1521      else
1522        srate.reference( mdir1.column( 1 ) ) ;
1523    }
1524    //os_ << "dir = " << dir << LogIO::POST ;
1525  }
1526  else {
1527    //os_ << "no interpolation" << LogIO::POST ;
1528    Matrix<Double> mdir0 = dcol( idx ) ;
1529    dir.reference( mdir0.column( 0 ) ) ;
1530    if ( mdir0.ncolumn() > 1 )
1531      srate.reference( mdir0.column( 1 ) ) ;
1532  }
1533
1534  //time1 = gettimeofday_sec() ;
1535  //os_ << "end getDirection 3rd stage endSec=" << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
1536  //double endSec = gettimeofday_sec() ;
1537  //os_ << "end MSFiller::getDirection1() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1538  return idx ;
1539}
1540
1541String MSFiller::keyTcal( Int feedid, Int spwid, String stime )
1542{
1543  String sfeed = "FEED" + String::toString( feedid ) ;
1544  String sspw = "SPW" + String::toString( spwid ) ;
1545  return sfeed+":"+sspw+":"+stime ;
1546}
1547
1548uInt MSFiller::binarySearch( Vector<MEpoch> &timeList, Double target )
1549{
1550  Int low = 0 ;
1551  Int high = timeList.nelements() ;
1552  uInt idx = 0 ;
1553
1554  while ( low <= high ) {
1555    idx = (Int)( 0.5 * ( low + high ) ) ;
1556    Double t = timeList[idx].get( "s" ).getValue() ;
1557    if ( t < target )
1558      low = idx + 1 ;
1559    else if ( t > target )
1560      high = idx - 1 ;
1561    else {
1562      return idx ;
1563    }
1564  }
1565
1566  idx = max( 0, min( low, high ) ) ;
1567
1568  return idx ;
1569}
1570
1571uInt MSFiller::binarySearch( Vector<Double> &timeList, Double target )
1572{
1573  Int low = 0 ;
1574  Int high = timeList.nelements() ;
1575  uInt idx = 0 ;
1576
1577  while ( low <= high ) {
1578    idx = (Int)( 0.5 * ( low + high ) ) ;
1579    Double t = timeList[idx] ;
1580    if ( t < target )
1581      low = idx + 1 ;
1582    else if ( t > target )
1583      high = idx - 1 ;
1584    else {
1585      return idx ;
1586    }
1587  }
1588
1589  idx = max( 0, min( low, high ) ) ;
1590
1591  return idx ;
1592}
1593
1594string MSFiller::getFrame()
1595{
1596  MFrequency::Types frame = MFrequency::DEFAULT ;
1597  ROTableColumn numChanCol( mstable_.spectralWindow(), "NUM_CHAN" ) ;
1598  ROTableColumn measFreqRefCol( mstable_.spectralWindow(), "MEAS_FREQ_REF" ) ;
1599  uInt nrow = numChanCol.nrow() ;
1600  Vector<Int> measFreqRef( nrow, MFrequency::DEFAULT ) ;
1601  uInt nref = 0 ;
1602  for ( uInt irow = 0 ; irow < nrow ; irow++ ) {
1603    if ( numChanCol.asInt( irow ) != 4 ) { // exclude WVR
1604      measFreqRef[nref] = measFreqRefCol.asInt( irow ) ;
1605      nref++ ;
1606    }
1607  }
1608  if ( nref > 0 )
1609    frame = (MFrequency::Types)measFreqRef[0] ;
1610
1611  return MFrequency::showType( frame ) ;
1612}
1613
1614void MSFiller::reshapeSpectraAndFlagtra( Cube<Float> &sp,
1615                                         Cube<Bool> &fl,
1616                                         Table &tab,
1617                                         Int &npol,
1618                                         Int &nchan,
1619                                         Int &nrow,
1620                                         Vector<Int> &corrtype )
1621{
1622  //double startSec = gettimeofday_sec() ;
1623  //os_ << "start MSFiller::reshapeSpectraAndFlagtra() startSec=" << startSec << LogIO::POST ; 
1624  if ( isFloatData_ ) {
1625    ROArrayColumn<Bool> mFlagCol( tab, "FLAG" ) ;
1626    ROArrayColumn<Float> mFloatDataCol( tab, "FLOAT_DATA" ) ;
1627    sp = mFloatDataCol.getColumn() ;
1628    fl = mFlagCol.getColumn() ;
1629  }
1630  else if ( isData_ ) {
1631    sp.resize( npol, nchan, nrow ) ;
1632    fl.resize( npol, nchan, nrow ) ;
1633    ROArrayColumn<Bool> mFlagCol( tab, "FLAG" ) ;
1634    ROArrayColumn<Complex> mDataCol( tab, "DATA" ) ;
1635    if ( npol < 3 ) {
1636//       Cube<Complex> tmp = mDataCol.getColumn() ;
1637//       Float *sp_p = sp.data() ;
1638//       Complex *tmp_p = tmp.data() ;
1639//       for ( uInt i = 0 ; i < sp.nelements() ; i++ )
1640//         sp_p[i] = tmp_p[i].real() ;
1641      Cube<Float> tmp = ComplexToReal( mDataCol.getColumn() ) ;
1642      IPosition start( 3, 0, 0, 0 ) ;
1643      IPosition end( 3, 2*npol-1, nchan-1, nrow-1 ) ;
1644      IPosition inc( 3, 2, 1, 1 ) ;
1645      sp = tmp( start, end, inc ) ;
1646      fl = mFlagCol.getColumn() ;
1647    }
1648    else {
1649      for ( Int irow = 0 ; irow < nrow ; irow++ ) {
1650        Bool crossOK = False ;
1651        Matrix<Complex> mSp = mDataCol( irow ) ;
1652        Matrix<Bool> mFl = mFlagCol( irow ) ;
1653        Matrix<Float> spxy = sp.xyPlane( irow ) ;
1654        Matrix<Bool> flxy = fl.xyPlane( irow ) ;
1655        for ( Int ipol = 0 ; ipol < npol ; ipol++ ) {
1656          if ( corrtype[ipol] == Stokes::XY || corrtype[ipol] == Stokes::YX
1657               || corrtype[ipol] == Stokes::RL || corrtype[ipol] == Stokes::LR ) {
1658            if ( !crossOK ) {
1659              Vector<Float> tmp = ComplexToReal( mSp.row( ipol ) ) ;
1660              IPosition start( 1, 0 ) ;
1661              IPosition end( 1, 2*nchan-1 ) ;
1662              IPosition inc( 1, 2 ) ;
1663              spxy.row( ipol ) = tmp( start, end, inc ) ;
1664              flxy.row( ipol ) = mFl.row( ipol ) ;
1665              start = IPosition( 1, 1 ) ;
1666              spxy.row( ipol+1 ) = tmp( start, end, inc ) ;
1667              flxy.row( ipol+1 ) = mFl.row( ipol ) ;
1668              if ( corrtype[ipol] == Stokes::YX || corrtype[ipol] == Stokes::LR ) {
1669                spxy.row( ipol+1 ) = spxy.row( ipol+1 ) * (Float)-1.0 ;
1670              }
1671              crossOK = True ;
1672            }
1673          }
1674          else {
1675            Vector<Float> tmp = ComplexToReal( mSp.row( ipol ) ) ;
1676            IPosition start( 1, 0 ) ;
1677            IPosition end( 1, 2*nchan-1 ) ;
1678            IPosition inc( 1, 2 ) ;
1679            spxy.row( ipol ) = tmp( start, end, inc ) ;
1680            flxy.row( ipol ) = mFl.row( ipol ) ;
1681          }
1682        }
1683      }
1684    }
1685  }
1686  //double endSec = gettimeofday_sec() ;
1687  //os_ << "end MSFiller::reshapeSpectraAndFlagtra() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1688}
1689
1690uInt MSFiller::getDirection( uInt idx,
1691                             Vector<Double> &dir,
1692                             Vector<Double> &azel,
1693                             Vector<Double> &srate,
1694                             ROScalarColumn<Double> &ptcol,
1695                             ROArrayColumn<Double> &pdcol,
1696                             MEpoch &t,
1697                             MPosition &antpos )
1698{
1699  //double startSec = gettimeofday_sec() ;
1700  //os_ << "start MSFiller::getDirection2() startSec=" << startSec << LogIO::POST ; 
1701  String refString ;
1702  MDirection::Types dirType ;
1703  uInt diridx = getDirection( idx, dir, srate, refString, ptcol, pdcol, t.get("s").getValue() ) ;
1704  MDirection::getType( dirType, refString ) ;
1705  MeasFrame mf( t, antpos ) ;
1706  if ( refString == "J2000" ) {
1707    MDirection::Convert toazel( dirType, MDirection::Ref( MDirection::AZEL, mf ) ) ;
1708    azel = toazel( dir ).getAngle("rad").getValue() ;
1709  }
1710  else if ( refString(0,4) == "AZEL" ) {
1711    azel = dir.copy() ;
1712    MDirection::Convert toj2000( dirType, MDirection::Ref( MDirection::J2000, mf ) ) ;
1713    dir = toj2000( dir ).getAngle("rad").getValue() ;
1714  }
1715  else {
1716    MDirection::Convert toazel( dirType, MDirection::Ref( MDirection::AZEL, mf ) ) ;
1717    azel = toazel( dir ).getAngle("rad").getValue() ;
1718    MDirection::Convert toj2000( dirType, MDirection::Ref( MDirection::J2000, mf ) ) ;
1719    dir = toj2000( dir ).getAngle("rad").getValue() ;
1720  }
1721  if ( srate.size() == 0 ) {
1722    srate.resize( 2 ) ;
1723    srate = 0.0 ;
1724  }
1725  //double endSec = gettimeofday_sec() ;
1726  //os_ << "end MSFiller::getDirection2() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1727  return diridx ;
1728}
1729
1730void MSFiller::getSourceDirection( Vector<Double> &dir,
1731                                   Vector<Double> &azel,
1732                                   Vector<Double> &srate,
1733                                   MEpoch &t,
1734                                   MPosition &antpos,
1735                                   Vector<MDirection> &srcdir )
1736{
1737  //double startSec = gettimeofday_sec() ;
1738  //os_ << "start MSFiller::getSourceDirection() startSec=" << startSec << LogIO::POST ;
1739  Vector<Double> defaultScanrate( 2, 0.0 ) ;
1740  Vector<Double> defaultDir = srcdir[0].getAngle( "rad" ).getValue() ;
1741  if ( srcdir.nelements() > 1 )
1742    defaultScanrate = srcdir[1].getAngle( "rad" ).getValue() ;
1743  String ref = srcdir[0].getRefString() ;
1744  MDirection::Types dirType ;
1745  MDirection::getType( dirType, ref ) ;
1746  MeasFrame mf( t, antpos ) ;
1747  if ( ref != "J2000" ) {
1748    MDirection::Convert toj2000( dirType, MDirection::Ref( MDirection::J2000, mf ) ) ;
1749    dir = toj2000( defaultDir ).getAngle("rad").getValue() ;
1750  }
1751  else
1752    dir = defaultDir ;
1753  if ( ref != "AZELGEO" ) {
1754    MDirection::Convert toazel( dirType, MDirection::Ref( MDirection::AZELGEO, mf ) ) ;
1755    azel = toazel( defaultDir ).getAngle("rad").getValue() ;
1756  }
1757  else
1758    azel = defaultDir ;
1759  srate = defaultScanrate ;
1760  //double endSec = gettimeofday_sec() ;
1761  //os_ << "end MSFiller::getSourceDirection() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1762}
1763
1764void MSFiller::initHeader( STHeader &header )
1765{
1766  header.nchan = 0 ;
1767  header.npol = 0 ;
1768  header.nif = 0 ;
1769  header.nbeam = 0 ;
1770  header.observer = "" ;
1771  header.project = "" ;
1772  header.obstype = "" ;
1773  header.antennaname = "" ;
1774  header.antennaposition.resize( 0 ) ;
1775  header.equinox = 0.0 ;
1776  header.freqref = "" ;
1777  header.reffreq = -1.0 ;
1778  header.bandwidth = 0.0 ;
1779  header.utc = 0.0 ;
1780  header.fluxunit = "" ;
1781  header.epoch = "" ;
1782  header.poltype = "" ;
1783}
1784
1785String MSFiller::asString( String name,
1786                           uInt idx,
1787                           Table tab,
1788                           boost::object_pool<ROTableColumn> *pool )
1789{
1790  ROTableColumn *col = pool->construct( tab, name ) ;
1791  String v = col->asString( idx ) ;
1792  pool->destroy( col ) ;
1793  return v ;
1794}
1795
1796Bool MSFiller::asBool( String name,
1797                         uInt idx,
1798                         Table &tab,
1799                         boost::object_pool<ROTableColumn> *pool )
1800{
1801  ROTableColumn *col = pool->construct( tab, name ) ;
1802  Bool v = col->asBool( idx ) ;
1803  pool->destroy( col ) ;
1804  return v ;
1805}
1806
1807uInt MSFiller::asuInt( String name,
1808                         uInt idx,
1809                         Table &tab,
1810                         boost::object_pool<ROTableColumn> *pool )
1811{
1812  ROTableColumn *col = pool->construct( tab, name ) ;
1813  uInt v = col->asuInt( idx ) ;
1814  pool->destroy( col ) ;
1815  return v ;
1816}
1817
1818Int MSFiller::asInt( String name,
1819                        uInt idx,
1820                        Table &tab,
1821                        boost::object_pool<ROTableColumn> *pool )
1822{
1823  ROTableColumn *col = pool->construct( tab, name ) ;
1824  Int v = col->asInt( idx ) ;
1825  pool->destroy( col ) ;
1826  return v ;
1827}
1828
1829Float MSFiller::asFloat( String name,
1830                          uInt idx,
1831                          Table &tab,
1832                          boost::object_pool<ROTableColumn> *pool )
1833{
1834  ROTableColumn *col = pool->construct( tab, name ) ;
1835  Float v = col->asfloat( idx ) ;
1836  pool->destroy( col ) ;
1837  return v ;
1838}
1839
1840Double MSFiller::asDouble( String name,
1841                           uInt idx,
1842                           Table &tab,
1843                           boost::object_pool<ROTableColumn> *pool )
1844{
1845  ROTableColumn *col = pool->construct( tab, name ) ;
1846  Double v = col->asdouble( idx ) ;
1847  pool->destroy( col ) ;
1848  return v ;
1849}
1850
1851void MSFiller::sourceInfo( Int sourceId,
1852                           Int spwId,
1853                           String &name,
1854                           MDirection &direction,
1855                           Vector<casa::Double> &properMotion,
1856                           Vector<casa::Double> &restFreqs,
1857                           Vector<casa::String> &transitions,
1858                           Vector<casa::Double> &sysVels,
1859                           boost::object_pool<ROTableColumn> *tpoolr )
1860{
1861  //double startSec = gettimeofday_sec() ;
1862  //os_ << "start MSFiller::sourceInfo() startSec=" << startSec << LogIO::POST ;
1863
1864  MSSource srctab = mstable_.source() ;
1865  MSSource srctabSel = srctab( srctab.col("SOURCE_ID") == sourceId && srctab.col("SPECTRAL_WINDOW_ID") == spwId ) ;
1866  if ( srctabSel.nrow() == 0 ) {
1867    srctabSel = srctab( srctab.col("SOURCE_ID") == sourceId && srctab.col("SPECTRAL_WINDOW_ID") == -1 ) ;
1868  }
1869  Int numLines = 0 ;
1870  if ( srctabSel.nrow() > 0 ) {
1871    // source name
1872    name = asString( "NAME", 0, srctabSel, tpoolr ) ;
1873   
1874    // source proper motion
1875    ROArrayColumn<Double> roArrDCol( srctabSel, "PROPER_MOTION" ) ;
1876    properMotion = roArrDCol( 0 ) ;
1877   
1878    // source direction as MDirection object
1879    ROScalarMeasColumn<MDirection> tmpMeasCol( srctabSel, "DIRECTION" ) ;
1880    direction = tmpMeasCol( 0 ) ;
1881   
1882    // number of lines
1883    numLines = asInt( "NUM_LINES", 0, srctabSel, tpoolr ) ;
1884  }
1885  else {
1886    name = "" ;
1887    properMotion = Vector<Double>( 2, 0.0 ) ;
1888    direction = MDirection( Quantum<Double>(0.0,Unit("rad")), Quantum<Double>(0.0,Unit("rad")) ) ;
1889  }
1890
1891  restFreqs.resize( numLines ) ;
1892  transitions.resize( numLines ) ;
1893  sysVels.resize( numLines ) ;
1894  if ( numLines > 0 ) {
1895    if ( srctabSel.tableDesc().isColumn( "REST_FREQUENCY" ) ) {
1896      ROArrayQuantColumn<Double> quantArrCol( srctabSel, "REST_FREQUENCY" ) ;
1897      Array< Quantum<Double> > qRestFreqs = quantArrCol( 0 ) ;
1898      for ( int i = 0 ; i < numLines ; i++ ) {
1899        restFreqs[i] = qRestFreqs( IPosition( 1, i ) ).getValue( "Hz" ) ;
1900      }
1901    }
1902    //os_ << "restFreqs = " << restFreqs << LogIO::POST ;
1903    if ( srctabSel.tableDesc().isColumn( "TRANSITION" ) ) {
1904      ROArrayColumn<String> transitionCol( srctabSel, "TRANSITION" ) ;
1905      if ( transitionCol.isDefined( 0 ) )
1906        transitions = transitionCol( 0 ) ;
1907      //os_ << "transitionNameCol.nrow() = " << transitionCol.nrow() << LogIO::POST ;
1908    }
1909    if ( srctabSel.tableDesc().isColumn( "SYSVEL" ) ) {
1910      ROArrayColumn<Double> roArrDCol( srctabSel, "SYSVEL" ) ;
1911      sysVels = roArrDCol( 0 ) ;
1912    }
1913  }
1914 
1915  //double endSec = gettimeofday_sec() ;
1916  //os_ << "end MSFiller::sourceInfo() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1917}
1918
1919void MSFiller::spectralSetup( Int spwId,
1920                              MEpoch &me,
1921                              MPosition &mp,
1922                              MDirection &md,
1923                              Double &refpix,
1924                              Double &refval,
1925                              Double &increment,
1926                              Int &nchan,
1927                              String &freqref,
1928                              Double &reffreq,
1929                              Double &bandwidth,
1930                              boost::object_pool<ROTableColumn> *tpoolr )
1931{
1932  //double startSec = gettimeofday_sec() ;
1933  //os_ << "start MSFiller::spectralSetup() startSec=" << startSec << LogIO::POST ;
1934
1935  MSSpectralWindow spwtab = mstable_.spectralWindow() ;
1936  MeasFrame mf( me, mp, md ) ;
1937  MFrequency::Types freqRef = MFrequency::castType( (uInt)asInt( "MEAS_FREQ_REF", spwId, spwtab, tpoolr ) ) ;
1938  Bool even = False ;
1939  if ( (nchan/2)*2 == nchan ) even = True ;
1940  ROScalarQuantColumn<Double> tmpQuantCol( spwtab, "TOTAL_BANDWIDTH" ) ;
1941  Double totbw = tmpQuantCol( spwId ).getValue( "Hz" ) ;
1942  if ( nchan != 4 )
1943    bandwidth = max( bandwidth, totbw ) ;
1944  if ( freqref == "" && nchan != 4)
1945    //sdh.freqref = MFrequency::showType( freqRef ) ;
1946    freqref = "LSRK" ;
1947  if ( reffreq == -1.0 && nchan != 4 ) {
1948    tmpQuantCol.attach( spwtab, "REF_FREQUENCY" ) ;
1949    Quantum<Double> qreffreq = tmpQuantCol( spwId ) ;
1950    if ( freqRef == MFrequency::LSRK ) {
1951      reffreq = qreffreq.getValue("Hz") ;
1952    }
1953    else {
1954      MFrequency::Convert tolsr( freqRef, MFrequency::Ref( MFrequency::LSRK, mf ) ) ;
1955      reffreq = tolsr( qreffreq ).get("Hz").getValue() ;
1956    }
1957  }
1958  Int refchan = nchan / 2 ;
1959  IPosition refip( 1, refchan ) ;
1960  refpix = 0.5*(nchan-1) ;
1961  refval = 0.0 ;
1962  ROArrayQuantColumn<Double> sharedQDArrCol( spwtab, "CHAN_WIDTH" ) ;
1963  increment = sharedQDArrCol( spwId )( refip ).getValue( "Hz" ) ;
1964  //           os_ << "nchan = " << nchan << " refchan = " << refchan << "(even=" << even << ") refpix = " << refpix << LogIO::POST ;
1965  sharedQDArrCol.attach( spwtab, "CHAN_FREQ" ) ;
1966  Vector< Quantum<Double> > chanFreqs = sharedQDArrCol( spwId ) ;
1967  if ( nchan > 1 && chanFreqs[0].getValue("Hz") > chanFreqs[1].getValue("Hz") )
1968    increment *= -1.0 ;
1969  if ( freqRef == MFrequency::LSRK ) {
1970    if ( even ) {
1971      IPosition refip0( 1, refchan-1 ) ;
1972      Double refval0 = chanFreqs(refip0).getValue("Hz") ;
1973      Double refval1 = chanFreqs(refip).getValue("Hz") ;
1974      refval = 0.5 * ( refval0 + refval1 ) ;
1975    }
1976    else {
1977      refval = chanFreqs(refip).getValue("Hz") ;
1978    }
1979  }
1980  else {
1981    MFrequency::Convert tolsr( freqRef, MFrequency::Ref( MFrequency::LSRK, mf ) ) ;
1982    if ( even ) {
1983      IPosition refip0( 1, refchan-1 ) ;
1984      Double refval0 = chanFreqs(refip0).getValue("Hz") ;
1985      Double refval1 = chanFreqs(refip).getValue("Hz") ;
1986      refval = 0.5 * ( refval0 + refval1 ) ;
1987      refval = tolsr( refval ).get("Hz").getValue() ;
1988    }
1989    else {
1990      refval = tolsr( chanFreqs(refip) ).get("Hz").getValue() ;
1991    }
1992  }
1993 
1994  //double endSec = gettimeofday_sec() ;
1995  //os_ << "end MSFiller::spectralSetup() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
1996}
1997
1998} ;
1999
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