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MSFiller.cpp@ 2151

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Last change on this file since 2151 was 2102, checked in by Takeshi Nakazato, 14 years ago

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JIRA Issue: No

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Interface Changes: No

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Description: Describe your changes here...

Bug fix on calibration script and polarization type resolution.

File size: 60.1 KB

Rev	Line
[1974]	1	//
	2	// C++ Interface: MSFiller
	3	//
	4	// Description:
	5	//
	6	// This class is specific filler for MS format
	7	//
	8	// Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2010
	9	//
	10	// Copyright: See COPYING file that comes with this distribution
	11	//
	12	//
	13
	14	#include <iostream>
	15	#include <map>
	16
	17	#include <tables/Tables/ExprNode.h>
	18	#include <tables/Tables/TableIter.h>
[1987]	19	#include <tables/Tables/TableColumn.h>
[1974]	20	#include <tables/Tables/ScalarColumn.h>
	21	#include <tables/Tables/ArrayColumn.h>
[1987]	22	#include <tables/Tables/TableParse.h>
[2002]	23	#include <tables/Tables/TableRow.h>
[1974]	24
[2002]	25	#include <casa/Containers/RecordField.h>
[1974]	26	#include <casa/Logging/LogIO.h>
	27	#include <casa/Arrays/Slicer.h>
	28	#include <casa/Quanta/MVTime.h>
[1987]	29	#include <casa/OS/Path.h>
[1974]	30
	31	#include <measures/Measures/Stokes.h>
	32	#include <measures/Measures/MEpoch.h>
[1987]	33	#include <measures/Measures/MCEpoch.h>
	34	#include <measures/Measures/MFrequency.h>
	35	#include <measures/Measures/MCFrequency.h>
	36	#include <measures/Measures/MPosition.h>
	37	#include <measures/Measures/MCPosition.h>
	38	#include <measures/Measures/MDirection.h>
	39	#include <measures/Measures/MCDirection.h>
	40	#include <measures/Measures/MeasConvert.h>
[1974]	41	#include <measures/TableMeasures/ScalarMeasColumn.h>
[1987]	42	#include <measures/TableMeasures/ArrayMeasColumn.h>
	43	#include <measures/TableMeasures/ScalarQuantColumn.h>
	44	#include <measures/TableMeasures/ArrayQuantColumn.h>
[1974]	45
[2021]	46	#include <ms/MeasurementSets/MSAntennaIndex.h>
	47
[1974]	48	#include <atnf/PKSIO/SrcType.h>
	49
	50	#include "MSFiller.h"
	51	#include "STHeader.h"
	52
[1988]	53	#include <ctime>
	54	#include <sys/time.h>
	55
[2017]	56	using namespace casa ;
	57	using namespace std ;
	58
	59	namespace asap {
	60	double MSFiller::gettimeofday_sec()
[1988]	61	{
	62	struct timeval tv ;
	63	gettimeofday( &tv, NULL ) ;
	64	return tv.tv_sec + (double)tv.tv_usec*1.0e-6 ;
	65	}
	66
[1974]	67	MSFiller::MSFiller( casa::CountedPtr<Scantable> stable )
	68	: table_( stable ),
[1987]	69	tablename_( "" ),
[1974]	70	antenna_( -1 ),
[2021]	71	antennaStr_(""),
[1974]	72	getPt_( False ),
	73	isFloatData_( False ),
	74	isData_( False ),
	75	isDoppler_( False ),
	76	isFlagCmd_( False ),
	77	isFreqOffset_( False ),
	78	isHistory_( False ),
	79	isProcessor_( False ),
	80	isSysCal_( False ),
[1993]	81	isWeather_( False ),
	82	colTsys_( "TSYS_SPECTRUM" ),
	83	colTcal_( "TCAL_SPECTRUM" )
[1974]	84	{
	85	os_ = LogIO() ;
	86	os_.origin( LogOrigin( "MSFiller", "MSFiller()", WHERE ) ) ;
	87	}
	88
	89	MSFiller::~MSFiller()
	90	{
	91	os_.origin( LogOrigin( "MSFiller", "~MSFiller()", WHERE ) ) ;
	92	}
	93
	94	bool MSFiller::open( const std::string &filename, const casa::Record &rec )
	95	{
	96	os_.origin( LogOrigin( "MSFiller", "open()", WHERE ) ) ;
[2004]	97	// double startSec = gettimeofday_sec() ;
	98	// os_ << "start MSFiller::open() startsec=" << startSec << LogIO::POST ;
[1974]	99	//os_ << " filename = " << filename << endl ;
	100
	101	// parsing MS options
	102	if ( rec.isDefined( "ms" ) ) {
	103	Record msrec = rec.asRecord( "ms" ) ;
	104	if ( msrec.isDefined( "getpt" ) ) {
	105	getPt_ = msrec.asBool( "getpt" ) ;
	106	}
	107	if ( msrec.isDefined( "antenna" ) ) {
	108	if ( msrec.type( msrec.fieldNumber( "antenna" ) ) == TpInt ) {
	109	antenna_ = msrec.asInt( "antenna" ) ;
	110	}
	111	else {
[2021]	112	//antenna_ = atoi( msrec.asString( "antenna" ).c_str() ) ;
	113	antennaStr_ = msrec.asString( "antenna" ) ;
[1974]	114	}
	115	}
	116	else {
	117	antenna_ = 0 ;
	118	}
	119	}
	120
[1987]	121	MeasurementSet *tmpMS = new MeasurementSet( filename, Table::Old ) ;
	122	//mstable_ = (*tmpMS)( tmpMS->col("ANTENNA1") == antenna_
	123	// && tmpMS->col("ANTENNA1") == tmpMS->col("ANTENNA2") ) ;
	124	tablename_ = tmpMS->tableName() ;
[2021]	125	if ( antenna_ == -1 && antennaStr_.size() > 0 ) {
	126	MSAntennaIndex msAntIdx( tmpMS->antenna() ) ;
	127	Vector<Int> id = msAntIdx.matchAntennaName( antennaStr_ ) ;
	128	if ( id.size() > 0 )
	129	antenna_ = id[0] ;
	130	}
[2025]	131
	132	os_ << "Parsing MS options" << endl ;
	133	os_ << " getPt = " << getPt_ << endl ;
	134	os_ << " antenna = " << antenna_ << endl ;
	135	os_ << " antennaStr = " << antennaStr_ << LogIO::POST ;
	136
[1987]	137	mstable_ = MeasurementSet( (*tmpMS)( tmpMS->col("ANTENNA1") == antenna_
	138	&& tmpMS->col("ANTENNA1") == tmpMS->col("ANTENNA2") ) ) ;
	139	// stringstream ss ;
	140	// ss << "SELECT FROM $1 WHERE ANTENNA1 == ANTENNA2 && ANTENNA1 == " << antenna_ ;
	141	// String taql( ss.str() ) ;
	142	// mstable_ = MeasurementSet( tableCommand( taql, *tmpMS ) ) ;
	143	delete tmpMS ;
[1974]	144
	145	// check which data column exists
[1987]	146	isFloatData_ = mstable_.tableDesc().isColumn( "FLOAT_DATA" ) ;
	147	isData_ = mstable_.tableDesc().isColumn( "DATA" ) ;
[1974]	148
[2004]	149	// double endSec = gettimeofday_sec() ;
	150	// os_ << "end MSFiller::open() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	151	return true ;
	152	}
	153
	154	void MSFiller::fill()
	155	{
	156	os_.origin( LogOrigin( "MSFiller", "fill()", WHERE ) ) ;
[2004]	157	// double startSec = gettimeofday_sec() ;
	158	// os_ << "start MSFiller::fill() startSec=" << startSec << LogIO::POST ;
[1974]	159
[2004]	160	// double time0 = gettimeofday_sec() ;
	161	// os_ << "start init fill: " << time0 << LogIO::POST ;
[1990]	162
[1974]	163	// Initialize header
	164	STHeader sdh ;
	165	sdh.nchan = 0 ;
	166	sdh.npol = 0 ;
	167	sdh.nif = 0 ;
	168	sdh.nbeam = 0 ;
	169	sdh.observer = "" ;
	170	sdh.project = "" ;
	171	sdh.obstype = "" ;
	172	sdh.antennaname = "" ;
	173	sdh.antennaposition.resize( 0 ) ;
	174	sdh.equinox = 0.0 ;
	175	sdh.freqref = "" ;
	176	sdh.reffreq = -1.0 ;
	177	sdh.bandwidth = 0.0 ;
	178	sdh.utc = 0.0 ;
	179	sdh.fluxunit = "" ;
	180	sdh.epoch = "" ;
	181	sdh.poltype = "" ;
	182
	183	// check if optional table exists
[1987]	184	//const TableRecord msrec = tablesel_.keywordSet() ;
	185	const TableRecord msrec = mstable_.keywordSet() ;
[1974]	186	isDoppler_ = msrec.isDefined( "DOPPLER" ) ;
[2004]	187	if ( isDoppler_ )
	188	if ( mstable_.doppler().nrow() == 0 )
	189	isDoppler_ = False ;
[1974]	190	isFlagCmd_ = msrec.isDefined( "FLAG_CMD" ) ;
[2004]	191	if ( isFlagCmd_ )
	192	if ( mstable_.flagCmd().nrow() == 0 )
	193	isFlagCmd_ = False ;
[1974]	194	isFreqOffset_ = msrec.isDefined( "FREQ_OFFSET" ) ;
[2004]	195	if ( isFreqOffset_ )
	196	if ( mstable_.freqOffset().nrow() == 0 )
	197	isFreqOffset_ = False ;
[1974]	198	isHistory_ = msrec.isDefined( "HISTORY" ) ;
[2004]	199	if ( isHistory_ )
	200	if ( mstable_.history().nrow() == 0 )
	201	isHistory_ = False ;
[1974]	202	isProcessor_ = msrec.isDefined( "PROCESSOR" ) ;
[2004]	203	if ( isProcessor_ )
	204	if ( mstable_.processor().nrow() == 0 )
	205	isProcessor_ = False ;
[1974]	206	isSysCal_ = msrec.isDefined( "SYSCAL" ) ;
[2004]	207	if ( isSysCal_ )
	208	if ( mstable_.sysCal().nrow() == 0 )
	209	isSysCal_ = False ;
[1974]	210	isWeather_ = msrec.isDefined( "WEATHER" ) ;
[2004]	211	if ( isWeather_ )
	212	if ( mstable_.weather().nrow() == 0 )
	213	isWeather_ = False ;
	214
[1974]	215	// Access to MS subtables
[1987]	216	MSField fieldtab = mstable_.field() ;
	217	MSPolarization poltab = mstable_.polarization() ;
	218	MSDataDescription ddtab = mstable_.dataDescription() ;
	219	MSObservation obstab = mstable_.observation() ;
	220	MSSource srctab = mstable_.source() ;
	221	MSSpectralWindow spwtab = mstable_.spectralWindow() ;
	222	MSSysCal caltab = mstable_.sysCal() ;
[1974]	223	if ( caltab.nrow() == 0 )
	224	isSysCal_ = False ;
[1993]	225	else {
	226	if ( !caltab.tableDesc().isColumn( colTcal_ ) )
	227	colTcal_ = "TCAL" ;
	228	if ( !caltab.tableDesc().isColumn( colTsys_ ) )
	229	colTsys_ = "TSYS" ;
	230	}
[2004]	231	// colTcal_ = "TCAL" ;
	232	// colTsys_ = "TSYS" ;
[1987]	233	MSPointing pointtab = mstable_.pointing() ;
	234	if ( mstable_.weather().nrow() == 0 )
[1974]	235	isWeather_ = False ;
[1987]	236	MSState stattab = mstable_.state() ;
	237	MSAntenna anttab = mstable_.antenna() ;
[1974]	238
[1987]	239	// TEST
	240	// memory allocation by boost::object_pool
	241	boost::object_pool<ROTableColumn> *tpoolr = new boost::object_pool<ROTableColumn> ;
	242	//
[1974]	243
[1987]	244	// SUBTABLES: FREQUENCIES
[1974]	245	table_->frequencies().setFrame( "LSRK" ) ;
	246	table_->frequencies().setFrame( "LSRK", True ) ;
	247
	248	// SUBTABLES: WEATHER
[2004]	249	fillWeather() ;
[1974]	250
	251	// SUBTABLES: FOCUS
	252	fillFocus() ;
	253
	254	// SUBTABLES: TCAL
[2004]	255	fillTcal( tpoolr ) ;
[1974]	256
	257	// SUBTABLES: FIT
	258	//fillFit() ;
	259
	260	// SUBTABLES: HISTORY
	261	//fillHistory() ;
	262
[1987]	263	// shared pointers
	264	ROTableColumn *tcolr ;
	265
[1974]	266	// MAIN
	267	// Iterate over several ids
	268	map<Int, uInt> ifmap ; // (IFNO, FREQ_ID) pair
[1987]	269	ROArrayQuantColumn<Double> *sharedQDArrCol = new ROArrayQuantColumn<Double>( anttab, "POSITION" ) ;
	270	Vector< Quantum<Double> > antpos = (*sharedQDArrCol)( antenna_ ) ;
	271	delete sharedQDArrCol ;
[1974]	272	MPosition mp( MVPosition( antpos ), MPosition::ITRF ) ;
[1990]	273	if ( getPt_ ) {
	274	//pointtab = pointtab( pointtab.col("ANTENNA_ID")==antenna_ ).sort("TIME") ;
	275	pointtab = MSPointing( pointtab( pointtab.col("ANTENNA_ID")==antenna_ ).sort("TIME") ) ;
	276	}
[1987]	277	tcolr = tpoolr->construct( anttab, "STATION" ) ;
	278	String stationName = tcolr->asString( antenna_ ) ;
	279	tpoolr->destroy( tcolr ) ;
	280	tcolr = tpoolr->construct( anttab, "NAME" ) ;
	281	String antennaName = tcolr->asString( antenna_ ) ;
	282	tpoolr->destroy( tcolr ) ;
	283	sdh.antennaposition.resize( 3 ) ;
	284	for ( int i = 0 ; i < 3 ; i++ )
	285	sdh.antennaposition[i] = antpos[i].getValue( "m" ) ;
	286	String telescopeName = "" ;
	287
[2021]	288	// double time1 = gettimeofday_sec() ;
	289	// os_ << "end fill init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
[1990]	290
[2002]	291	// row based
	292	Table &stab = table_->table() ;
	293	TableRow row( stab ) ;
	294	TableRecord &trec = row.record() ;
	295	RecordFieldPtr< Array<Float> > spRF( trec, "SPECTRA" ) ;
	296	RecordFieldPtr< Array<uChar> > ucarrRF( trec, "FLAGTRA" ) ;
	297	RecordFieldPtr<Double> timeRF( trec, "TIME" ) ;
	298	RecordFieldPtr< Array<Float> > tsysRF( trec, "TSYS" ) ;
	299	RecordFieldPtr<Double> intervalRF( trec, "INTERVAL" ) ;
	300	RecordFieldPtr< Array<Double> > dirRF( trec, "DIRECTION" ) ;
	301	RecordFieldPtr<Float> azRF( trec, "AZIMUTH" ) ;
	302	RecordFieldPtr<Float> elRF( trec, "ELEVATION" ) ;
	303	RecordFieldPtr< Array<Double> > scrRF( trec, "SCANRATE" ) ;
	304	RecordFieldPtr<uInt> cycleRF( trec, "CYCLENO" ) ;
	305	RecordFieldPtr<uInt> flrRF( trec, "FLAGROW" ) ;
	306	RecordFieldPtr<uInt> tcalidRF( trec, "TCAL_ID" ) ;
	307	RecordFieldPtr<uInt> widRF( trec, "WEATHER_ID" ) ;
	308	RecordFieldPtr<uInt> polnoRF( trec, "POLNO" ) ;
	309
	310
	311	// REFBEAMNO
	312	RecordFieldPtr<Int> intRF( trec, "REFBEAMNO" ) ;
	313	*intRF = 0 ;
	314
	315	// FIT_ID
	316	intRF.attachToRecord( trec, "FIT_ID" ) ;
	317	*intRF = -1 ;
	318
	319	// OPACITY
	320	RecordFieldPtr<Float> floatRF( trec, "OPACITY" ) ;
	321	*floatRF = 0.0 ;
	322
[1978]	323	//
	324	// ITERATION: OBSERVATION_ID
	325	//
[1987]	326	TableIterator iter0( mstable_, "OBSERVATION_ID" ) ;
[1974]	327	while( !iter0.pastEnd() ) {
[2021]	328	// time0 = gettimeofday_sec() ;
	329	// os_ << "start 0th iteration: " << time0 << LogIO::POST ;
[1987]	330	Table t0 = iter0.table() ;
	331	tcolr = tpoolr->construct( t0, "OBSERVATION_ID" ) ;
	332	Int obsId = tcolr->asInt( 0 ) ;
	333	tpoolr->destroy( tcolr ) ;
	334	if ( sdh.observer == "" ) {
	335	tcolr = tpoolr->construct( obstab, "OBSERVER" ) ;
	336	sdh.observer = tcolr->asString( obsId ) ;
	337	tpoolr->destroy( tcolr ) ;
	338	}
	339	if ( sdh.project == "" ) {
	340	tcolr = tpoolr->construct( obstab, "PROJECT" ) ;
	341	sdh.observer = tcolr->asString( obsId ) ;
	342	tpoolr->destroy( tcolr ) ;
	343	}
	344	ROArrayMeasColumn<MEpoch> *tmpMeasCol = new ROArrayMeasColumn<MEpoch>( obstab, "TIME_RANGE" ) ;
	345	MEpoch me = (*tmpMeasCol)( obsId )( IPosition(1,0) ) ;
	346	delete tmpMeasCol ;
[1974]	347	if ( sdh.utc == 0.0 ) {
[2035]	348	sdh.utc = me.get( "d" ).getValue() ;
[1974]	349	}
[1987]	350	if ( telescopeName == "" ) {
	351	tcolr = tpoolr->construct( obstab, "TELESCOPE_NAME" ) ;
[2025]	352	telescopeName = tcolr->asString( obsId ) ;
[1987]	353	tpoolr->destroy( tcolr ) ;
	354	}
[1978]	355	Int nbeam = 0 ;
[2021]	356	// time1 = gettimeofday_sec() ;
	357	// os_ << "end 0th iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
[1974]	358	//
	359	// ITERATION: FEED1
	360	//
	361	TableIterator iter1( t0, "FEED1" ) ;
	362	while( !iter1.pastEnd() ) {
[2021]	363	// time0 = gettimeofday_sec() ;
	364	// os_ << "start 1st iteration: " << time0 << LogIO::POST ;
[1987]	365	Table t1 = iter1.table() ;
	366	// assume FEED1 == FEED2
	367	tcolr = tpoolr->construct( t1, "FEED1" ) ;
	368	Int feedId = tcolr->asInt( 0 ) ;
	369	tpoolr->destroy( tcolr ) ;
[1974]	370	nbeam++ ;
[2002]	371
	372	// BEAMNO
	373	RecordFieldPtr<uInt> uintRF( trec, "BEAMNO" ) ;
	374	*uintRF = feedId ;
	375
	376	// FOCUS_ID
	377	uintRF.attachToRecord( trec, "FOCUS_ID" ) ;
	378	*uintRF = 0 ;
	379
[2021]	380	// time1 = gettimeofday_sec() ;
	381	// os_ << "end 1st iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
[1974]	382	//
	383	// ITERATION: FIELD_ID
	384	//
	385	TableIterator iter2( t1, "FIELD_ID" ) ;
	386	while( !iter2.pastEnd() ) {
[2021]	387	// time0 = gettimeofday_sec() ;
	388	// os_ << "start 2nd iteration: " << time0 << LogIO::POST ;
[1987]	389	Table t2 = iter2.table() ;
	390	tcolr = tpoolr->construct( t2, "FIELD_ID" ) ;
	391	Int fieldId = tcolr->asInt( 0 ) ;
	392	tpoolr->destroy( tcolr ) ;
	393	tcolr = tpoolr->construct( fieldtab, "SOURCE_ID" ) ;
	394	Int srcId = tcolr->asInt( fieldId ) ;
	395	tpoolr->destroy( tcolr ) ;
	396	tcolr = tpoolr->construct( fieldtab, "NAME" ) ;
	397	String fieldName = tcolr->asString( fieldId ) + "__" + String::toString(fieldId) ;
	398	tpoolr->destroy( tcolr ) ;
[2004]	399	ROArrayMeasColumn<MDirection> *delayDirCol = new ROArrayMeasColumn<MDirection>( fieldtab, "DELAY_DIR" ) ;
	400	Vector<MDirection> delayDir = (*delayDirCol)( fieldId ) ;
	401	delete delayDirCol ;
	402	Vector<Double> defaultScanrate( 2, 0.0 ) ;
	403	Vector<Double> defaultDir = delayDir[0].getAngle( "rad" ).getValue() ;
	404	if ( delayDir.nelements() > 1 )
	405	defaultScanrate = delayDir[1].getAngle( "rad" ).getValue() ;
	406
[2002]	407
	408	// FIELDNAME
	409	RecordFieldPtr<String> strRF( trec, "FIELDNAME" ) ;
	410	*strRF = fieldName ;
	411
	412
[2021]	413	// time1 = gettimeofday_sec() ;
	414	// os_ << "end 2nd iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
[1974]	415	//
	416	// ITERATION: DATA_DESC_ID
	417	//
	418	TableIterator iter3( t2, "DATA_DESC_ID" ) ;
	419	while( !iter3.pastEnd() ) {
[2021]	420	// time0 = gettimeofday_sec() ;
	421	// os_ << "start 3rd iteration: " << time0 << LogIO::POST ;
[1987]	422	Table t3 = iter3.table() ;
	423	tcolr = tpoolr->construct( t3, "DATA_DESC_ID" ) ;
	424	Int ddId = tcolr->asInt( 0 ) ;
	425	tpoolr->destroy( tcolr ) ;
	426	tcolr = tpoolr->construct( ddtab, "POLARIZATION_ID" ) ;
	427	Int polId = tcolr->asInt( ddId ) ;
	428	tpoolr->destroy( tcolr ) ;
	429	tcolr = tpoolr->construct( ddtab, "SPECTRAL_WINDOW_ID" ) ;
	430	Int spwId = tcolr->asInt( ddId ) ;
	431	tpoolr->destroy( tcolr ) ;
[2002]	432
	433	// IFNO
	434	uintRF.attachToRecord( trec, "IFNO" ) ;
	435	*uintRF = (uInt)spwId ;
	436
[1974]	437	// polarization information
[1987]	438	tcolr = tpoolr->construct( poltab, "NUM_CORR" ) ;
	439	Int npol = tcolr->asInt( polId ) ;
	440	tpoolr->destroy( tcolr ) ;
	441	ROArrayColumn<Int> *roArrICol = new ROArrayColumn<Int>( poltab, "CORR_TYPE" ) ;
	442	Vector<Int> corrtype = (*roArrICol)( polId ) ;
	443	delete roArrICol ;
[2021]	444	// os_ << "npol = " << npol << LogIO::POST ;
	445	// os_ << "corrtype = " << corrtype << LogIO::POST ;
[1974]	446	// source information
[2033]	447	// os_ << "srcId = " << srcId << ", spwId = " << spwId << LogIO::POST ;
[2004]	448	MSSource srctabSel = srctab( srctab.col("SOURCE_ID") == srcId && srctab.col("SPECTRAL_WINDOW_ID") == spwId ) ;
	449	if ( srctabSel.nrow() == 0 ) {
	450	srctabSel = srctab( srctab.col("SOURCE_ID") == srcId && srctab.col("SPECTRAL_WINDOW_ID") == -1 ) ;
	451	}
[2033]	452	String srcName( "" ) ;
	453	Vector<Double> srcPM( 2, 0.0 ) ;
	454	Vector<Double> srcDir( 2, 0.0 ) ;
	455	MDirection md ;
	456	Int numLines = 0 ;
	457	ROArrayColumn<Double> *roArrDCol = 0 ;
	458	if ( srctabSel.nrow() > 0 ) {
	459	// source name
	460	tcolr = tpoolr->construct( srctabSel, "NAME" ) ;
	461	srcName = tcolr->asString( 0 ) ;
	462	tpoolr->destroy( tcolr ) ;
[2002]	463
[2033]	464	// source proper motion
	465	roArrDCol = new ROArrayColumn<Double>( srctabSel, "PROPER_MOTION" ) ;
	466	srcPM = (*roArrDCol)( 0 ) ;
	467	delete roArrDCol ;
	468
	469	// source direction
	470	roArrDCol = new ROArrayColumn<Double>( srctabSel, "DIRECTION" ) ;
	471	srcDir = (*roArrDCol)( 0 ) ;
	472	delete roArrDCol ;
	473
	474	// source direction as MDirection object
	475	ROScalarMeasColumn<MDirection> *tmpMeasCol = new ROScalarMeasColumn<MDirection>( srctabSel, "DIRECTION" ) ;
	476	md = (*tmpMeasCol)( 0 ) ;
	477	delete tmpMeasCol ;
	478
	479	// number of lines
	480	tcolr = tpoolr->construct( srctabSel, "NUM_LINES" ) ;
[2059]	481	numLines = tcolr->asInt( 0 ) ;
[2033]	482	tpoolr->destroy( tcolr ) ;
	483
	484	}
	485	else {
	486	md = MDirection( Quantum<Double>(0.0,Unit("rad")), Quantum<Double>(0.0,Unit("rad")) ) ;
	487	}
	488
[2002]	489	// SRCNAME
	490	strRF.attachToRecord( trec, "SRCNAME" ) ;
	491	*strRF = srcName ;
	492
[2033]	493	// os_ << "srcName = " << srcName << LogIO::POST ;
[2002]	494
	495	// SRCPROPERMOTION
	496	RecordFieldPtr< Array<Double> > darrRF( trec, "SRCPROPERMOTION" ) ;
	497	*darrRF = srcPM ;
	498
[1974]	499	//os_ << "srcPM = " << srcPM << LogIO::POST ;
[2002]	500
	501	// SRCDIRECTION
	502	darrRF.attachToRecord( trec, "SRCDIRECTION" ) ;
	503	*darrRF = srcDir ;
	504
[1974]	505	//os_ << "srcDir = " << srcDir << LogIO::POST ;
[2021]	506
[1974]	507	// for MOLECULES subtable
[2021]	508	// os_ << "numLines = " << numLines << LogIO::POST ;
	509
[1974]	510	Vector<Double> restFreqs( numLines, 0.0 ) ;
	511	Vector<String> transitionName( numLines, "" ) ;
[2021]	512	Vector<Double> sysVels ;
	513	Double sysVel = 0.0 ;
[1974]	514	if ( numLines != 0 ) {
[1987]	515	if ( srctabSel.tableDesc().isColumn( "REST_FREQUENCY" ) ) {
	516	sharedQDArrCol = new ROArrayQuantColumn<Double>( srctabSel, "REST_FREQUENCY" ) ;
	517	Array< Quantum<Double> > qRestFreqs = (*sharedQDArrCol)( 0 ) ;
	518	delete sharedQDArrCol ;
	519	for ( int i = 0 ; i < numLines ; i++ ) {
	520	restFreqs[i] = qRestFreqs( IPosition( 1, i ) ).getValue( "Hz" ) ;
	521	}
[1974]	522	}
[2033]	523	// os_ << "restFreqs = " << restFreqs << LogIO::POST ;
[1974]	524	if ( srctabSel.tableDesc().isColumn( "TRANSITION" ) ) {
[2004]	525	ROArrayColumn<String> transitionCol( srctabSel, "TRANSITION" ) ;
	526	if ( transitionCol.isDefined( 0 ) )
	527	transitionName = transitionCol( 0 ) ;
	528	//os_ << "transitionNameCol.nrow() = " << transitionCol.nrow() << LogIO::POST ;
[1974]	529	}
[2021]	530	if ( srctabSel.tableDesc().isColumn( "SYSVEL" ) ) {
	531	roArrDCol = new ROArrayColumn<Double>( srctabSel, "SYSVEL" ) ;
	532	sysVels = (*roArrDCol)( 0 ) ;
	533	delete roArrDCol ;
	534	}
	535	if ( !sysVels.empty() ) {
	536	//os_ << "sysVels.shape() = " << sysVels.shape() << LogIO::POST ;
	537	// NB: assume all SYSVEL values are the same
	538	sysVel = sysVels( IPosition(1,0) ) ;
	539	}
[1974]	540	}
[2021]	541
	542	// SRCVELOCITY
	543	RecordFieldPtr<Double> doubleRF( trec, "SRCVELOCITY" ) ;
	544	*doubleRF = sysVel ;
	545
	546	// os_ << "sysVel = " << sysVel << LogIO::POST ;
	547
[1974]	548	uInt molId = table_->molecules().addEntry( restFreqs, transitionName, transitionName ) ;
[2002]	549
	550	// MOLECULE_ID
	551	uintRF.attachToRecord( trec, "MOLECULE_ID" ) ;
	552	*uintRF = molId ;
	553
[1974]	554	// spectral setup
	555	MeasFrame mf( me, mp, md ) ;
[1987]	556	tcolr = tpoolr->construct( spwtab, "MEAS_FREQ_REF" ) ;
	557	MFrequency::Types freqRef = MFrequency::castType((uInt)(tcolr->asInt(spwId))) ;
	558	tpoolr->destroy( tcolr ) ;
	559	tcolr = tpoolr->construct( spwtab, "NUM_CHAN" ) ;
	560	Int nchan = tcolr->asInt( spwId ) ;
[2102]	561	Bool iswvr = False ;
	562	if ( nchan == 4 ) iswvr = True ;
[1987]	563	tpoolr->destroy( tcolr ) ;
[1974]	564	Bool even = False ;
	565	if ( (nchan/2)*2 == nchan ) even = True ;
[1993]	566	sdh.nchan = max( sdh.nchan, nchan ) ;
[1987]	567	ROScalarQuantColumn<Double> *tmpQuantCol = new ROScalarQuantColumn<Double>( spwtab, "TOTAL_BANDWIDTH" ) ;
	568	Double totbw = (*tmpQuantCol)( spwId ).getValue( "Hz" ) ;
	569	delete tmpQuantCol ;
[1993]	570	sdh.bandwidth = max( sdh.bandwidth, totbw ) ;
[1974]	571	if ( sdh.freqref == "" )
	572	//sdh.freqref = MFrequency::showType( freqRef ) ;
	573	sdh.freqref = "LSRK" ;
	574	if ( sdh.reffreq == -1.0 ) {
[1987]	575	tmpQuantCol = new ROScalarQuantColumn<Double>( spwtab, "REF_FREQUENCY" ) ;
	576	Quantum<Double> qreffreq = (*tmpQuantCol)( spwId ) ;
	577	delete tmpQuantCol ;
[1974]	578	if ( freqRef == MFrequency::LSRK ) {
	579	sdh.reffreq = qreffreq.getValue("Hz") ;
	580	}
	581	else {
	582	MFrequency::Convert tolsr( freqRef, MFrequency::Ref( MFrequency::LSRK, mf ) ) ;
	583	sdh.reffreq = tolsr( qreffreq ).get("Hz").getValue() ;
	584	}
	585	}
	586	Int refchan = nchan / 2 ;
	587	IPosition refip( 1, refchan ) ;
[2083]	588	Double refpix = 0.5*(nchan-1) ;
[1974]	589	Double refval = 0.0 ;
[1987]	590	sharedQDArrCol = new ROArrayQuantColumn<Double>( spwtab, "CHAN_WIDTH" ) ;
	591	Double increment = (*sharedQDArrCol)( spwId )( refip ).getValue( "Hz" ) ;
	592	delete sharedQDArrCol ;
[2033]	593	// os_ << "nchan = " << nchan << " refchan = " << refchan << "(even=" << even << ") refpix = " << refpix << LogIO::POST ;
[1987]	594	sharedQDArrCol = new ROArrayQuantColumn<Double>( spwtab, "CHAN_FREQ" ) ;
	595	Vector< Quantum<Double> > chanFreqs = (*sharedQDArrCol)( spwId ) ;
	596	delete sharedQDArrCol ;
[1974]	597	if ( freqRef == MFrequency::LSRK ) {
	598	if ( even ) {
	599	IPosition refip0( 1, refchan-1 ) ;
	600	Double refval0 = chanFreqs(refip0).getValue("Hz") ;
	601	Double refval1 = chanFreqs(refip).getValue("Hz") ;
	602	refval = 0.5 * ( refval0 + refval1 ) ;
	603	}
	604	else {
	605	refval = chanFreqs(refip).getValue("Hz") ;
	606	}
	607	}
	608	else {
	609	MFrequency::Convert tolsr( freqRef, MFrequency::Ref( MFrequency::LSRK, mf ) ) ;
	610	if ( even ) {
	611	IPosition refip0( 1, refchan-1 ) ;
	612	Double refval0 = chanFreqs(refip0).getValue("Hz") ;
	613	Double refval1 = chanFreqs(refip).getValue("Hz") ;
	614	refval = 0.5 * ( refval0 + refval1 ) ;
	615	refval = tolsr( refval ).get("Hz").getValue() ;
	616	}
	617	else {
	618	refval = tolsr( chanFreqs(refip) ).get("Hz").getValue() ;
	619	}
	620	}
	621	uInt freqId = table_->frequencies().addEntry( refpix, refval, increment ) ;
	622	if ( ifmap.find( spwId ) == ifmap.end() ) {
	623	ifmap.insert( pair<Int, uInt>(spwId,freqId) ) ;
	624	//os_ << "added to ifmap: (" << spwId << "," << freqId << ")" << LogIO::POST ;
	625	}
[2002]	626
	627	// FREQ_ID
	628	uintRF.attachToRecord( trec, "FREQ_ID" ) ;
	629	*uintRF = freqId ;
	630
[1974]	631	// for TSYS and TCAL
[2004]	632	Vector<MEpoch> scTime ;
	633	Vector<Double> scInterval ;
	634	ROArrayColumn<Float> scTsysCol ;
	635	MSSysCal caltabsel ;
	636	if ( isSysCal_ ) {
	637	caltabsel = caltab( caltab.col("ANTENNA_ID") == antenna_ && caltab.col("FEED_ID") == feedId && caltab.col("SPECTRAL_WINDOW_ID") == spwId ).sort("TIME") ;
	638	ROScalarMeasColumn<MEpoch> scTimeCol( caltabsel, "TIME" ) ;
	639	scTime.resize( caltabsel.nrow() ) ;
	640	for ( uInt irow = 0 ; irow < caltabsel.nrow() ; irow++ )
	641	scTime[irow] = scTimeCol( irow ) ;
	642	ROScalarColumn<Double> *scIntervalCol = new ROScalarColumn<Double>( caltabsel, "INTERVAL" ) ;
	643	scInterval = scIntervalCol->getColumn() ;
	644	delete scIntervalCol ;
	645	scTsysCol.attach( caltabsel, colTsys_ ) ;
	646	}
[2102]	647
	648	sdh.npol = max( sdh.npol, npol ) ;
	649	if ( !iswvr && sdh.poltype == "" ) sdh.poltype = getPolType( corrtype[0] ) ;
	650
[2021]	651	// time1 = gettimeofday_sec() ;
	652	// os_ << "end 3rd iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
[1974]	653	//
	654	// ITERATION: SCAN_NUMBER
	655	//
	656	TableIterator iter4( t3, "SCAN_NUMBER" ) ;
	657	while( !iter4.pastEnd() ) {
[2021]	658	// time0 = gettimeofday_sec() ;
	659	// os_ << "start 4th iteration: " << time0 << LogIO::POST ;
[1987]	660	Table t4 = iter4.table() ;
	661	tcolr = tpoolr->construct( t4, "SCAN_NUMBER" ) ;
	662	Int scanNum = tcolr->asInt( 0 ) ;
	663	tpoolr->destroy( tcolr ) ;
[2002]	664
	665	// SCANNO
	666	uintRF.attachToRecord( trec, "SCANNO" ) ;
	667	*uintRF = scanNum - 1 ;
	668
[2021]	669	// time1 = gettimeofday_sec() ;
	670	// os_ << "end 4th iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
[1974]	671	//
	672	// ITERATION: STATE_ID
	673	//
	674	TableIterator iter5( t4, "STATE_ID" ) ;
	675	while( !iter5.pastEnd() ) {
[2033]	676	// time0 = gettimeofday_sec() ;
	677	// os_ << "start 5th iteration: " << time0 << LogIO::POST ;
[1987]	678	Table t5 = iter5.table() ;
	679	tcolr = tpoolr->construct( t5, "STATE_ID" ) ;
	680	Int stateId = tcolr->asInt( 0 ) ;
	681	tpoolr->destroy( tcolr ) ;
	682	tcolr = tpoolr->construct( stattab, "OBS_MODE" ) ;
	683	String obstype = tcolr->asString( stateId ) ;
	684	tpoolr->destroy( tcolr ) ;
[1974]	685	if ( sdh.obstype == "" ) sdh.obstype = obstype ;
	686
	687	Int nrow = t5.nrow() ;
[2033]	688	// time1 = gettimeofday_sec() ;
	689	// os_ << "end 5th iteration init: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
[2002]	690
[2004]	691	uInt cycle = 0 ;
	692
[2002]	693	Cube<Float> spArr ;
	694	Cube<Bool> flArr ;
[1974]	695	if ( isFloatData_ ) {
[2002]	696	ROArrayColumn<Bool> mFlagCol( t5, "FLAG" ) ;
[1974]	697	ROArrayColumn<Float> mFloatDataCol( t5, "FLOAT_DATA" ) ;
[2002]	698	spArr = mFloatDataCol.getColumn() ;
	699	flArr = mFlagCol.getColumn() ;
[1974]	700	if ( sdh.fluxunit == "" ) {
[2002]	701	const TableRecord &dataColKeys = mFloatDataCol.keywordSet() ;
[1974]	702	if ( dataColKeys.isDefined( "UNIT" ) )
	703	sdh.fluxunit = dataColKeys.asString( "UNIT" ) ;
	704	}
	705	}
	706	else if ( isData_ ) {
[2002]	707	spArr.resize( npol, nchan, nrow ) ;
[2004]	708	flArr.resize( npol, nchan, nrow ) ;
[2002]	709	ROArrayColumn<Bool> mFlagCol( t5, "FLAG" ) ;
[1974]	710	ROArrayColumn<Complex> mDataCol( t5, "DATA" ) ;
[1987]	711	for ( Int irow = 0 ; irow < nrow ; irow++ ) {
	712	Bool crossOK = False ;
	713	Matrix<Complex> sp = mDataCol( irow ) ;
[2002]	714	Matrix<Bool> fl = mFlagCol( irow ) ;
[2004]	715	Matrix<Float> spxy = spArr.xyPlane( irow ) ;
	716	Matrix<Bool> flxy = flArr.xyPlane( irow ) ;
[1987]	717	for ( Int ipol = 0 ; ipol < npol ; ipol++ ) {
	718	if ( corrtype[ipol] == Stokes::XY \|\| corrtype[ipol] == Stokes::YX
	719	\|\| corrtype[ipol] == Stokes::RL \|\| corrtype[ipol] == Stokes::LR ) {
	720	if ( !crossOK ) {
[2004]	721	spxy.row( ipol ) = real( sp.row( ipol ) ) ;
	722	flxy.row( ipol ) = fl.row( ipol ) ;
[2002]	723	if ( corrtype[ipol] == Stokes::XY \|\| corrtype[ipol] == Stokes::RL ) {
[2004]	724	spxy.row( ipol+1 ) = imag( sp.row( ipol ) ) ;
	725	flxy.row( ipol+1 ) = fl.row( ipol ) ;
[2002]	726	}
	727	else {
[2004]	728	spxy.row( ipol+1 ) = imag( conj( sp.row( ipol ) ) ) ;
	729	flxy.row( ipol+1 ) = fl.row( ipol ) ;
[2002]	730	}
[2004]	731	crossOK = True ;
[1974]	732	}
	733	}
[1987]	734	else {
[2004]	735	spxy.row( ipol ) = real( sp.row( ipol ) ) ;
	736	flxy.row( ipol ) = fl.row( ipol ) ;
[1987]	737	}
[1974]	738	}
[1987]	739	}
[1974]	740	if ( sdh.fluxunit == "" ) {
[2002]	741	const TableRecord &dataColKeys = mDataCol.keywordSet() ;
[1974]	742	if ( dataColKeys.isDefined( "UNIT" ) )
[2002]	743	sdh.fluxunit = dataColKeys.asString( "UNIT" ) ;
	744	}
[1974]	745	}
[1987]	746	ROScalarMeasColumn<MEpoch> *mTimeCol = new ROScalarMeasColumn<MEpoch>( t5, "TIME" ) ;
[2002]	747	Block<MEpoch> mTimeB( nrow ) ;
	748	for ( Int irow = 0 ; irow < nrow ; irow++ )
	749	mTimeB[irow] = (*mTimeCol)( irow ) ;
	750	ROTableColumn *mIntervalCol = tpoolr->construct( t5, "INTERVAL" ) ;
	751	ROTableColumn *mFlagRowCol = tpoolr->construct( t5, "FLAG_ROW" ) ;
	752	Block<Int> sysCalIdx( nrow, -1 ) ;
	753	if ( isSysCal_ ) {
[2017]	754	getSysCalTime( scTime, scInterval, mTimeB, sysCalIdx ) ;
[1974]	755	}
[2002]	756	delete mTimeCol ;
	757	Matrix<Float> defaulttsys( npol, 1, 1.0 ) ;
	758	Int srcType = getSrcType( stateId, tpoolr ) ;
	759	uInt diridx = 0 ;
	760	MDirection::Types dirType ;
	761	uInt wid = 0 ;
	762	Int pidx = 0 ;
	763	Bool crossOK = False ;
	764	Block<uInt> polnos( npol, 99 ) ;
	765	for ( Int ipol = 0 ; ipol < npol ; ipol++ ) {
	766	Block<uInt> p = getPolNo( corrtype[ipol] ) ;
	767	if ( p.size() > 1 ) {
	768	if ( crossOK ) continue ;
	769	else {
	770	polnos[pidx] = p[0] ;
	771	pidx++ ;
	772	polnos[pidx] = p[1] ;
	773	pidx++ ;
	774	crossOK = True ;
[1974]	775	}
	776	}
[2002]	777	else {
	778	polnos[pidx] = p[0] ;
	779	pidx++ ;
	780	}
[1974]	781	}
[2002]	782
	783	// SRCTYPE
	784	intRF.attachToRecord( trec, "SRCTYPE" ) ;
	785	*intRF = srcType ;
[1974]	786
[2002]	787	for ( Int irow = 0 ; irow < nrow ; irow++ ) {
	788	// CYCLENO
	789	*cycleRF = cycle ;
[1987]	790
[2002]	791	// FLAGROW
	792	*flrRF = (uInt)mFlagRowCol->asBool( irow ) ;
	793
	794	// SPECTRA, FLAG
	795	Matrix<Float> sp = spArr.xyPlane( irow ) ;
	796	Matrix<Bool> flb = flArr.xyPlane( irow ) ;
	797	Matrix<uChar> fl( flb.shape() ) ;
	798	convertArray( fl, flb ) ;
	799
	800	// TIME
[2004]	801	*timeRF = mTimeB[irow].get("d").getValue() ;
[2002]	802
	803	// INTERVAL
	804	*intervalRF = (Double)(mIntervalCol->asdouble( irow )) ;
	805
	806	// TSYS
	807	Matrix<Float> tsys ;
	808	if ( sysCalIdx[irow] != -1 )
	809	tsys = scTsysCol( irow ) ;
	810	else
	811	tsys = defaulttsys ;
	812
	813	// TCAL_ID
[2004]	814	Block<uInt> tcalids( npol, 0 ) ;
	815	if ( sysCalIdx[irow] != -1 ) {
	816	tcalids = getTcalId( feedId, spwId, scTime[sysCalIdx[irow]] ) ;
[1987]	817	}
	818
[2002]	819	// WEATHER_ID
	820	if ( isWeather_ )
	821	wid = getWeatherId( wid, mTimeB[irow].get("s").getValue() ) ;
	822	*widRF = wid ;
	823
[1987]	824
[2002]	825	// DIRECTION, AZEL, SCANRATE
	826	if ( getPt_ ) {
[1974]	827	Vector<Double> dir ;
	828	Vector<Double> scanrate ;
	829	String refString ;
[2002]	830	diridx = getDirection( diridx, dir, scanrate, refString, pointtab, mTimeB[irow].get("s").getValue() ) ;
[1974]	831	MDirection::getType( dirType, refString ) ;
[2002]	832	mf.resetEpoch( mTimeB[irow] ) ;
[1974]	833	mf.resetDirection( MDirection( MVDirection(dir), dirType ) ) ;
	834	if ( refString == "J2000" ) {
[2002]	835	*dirRF = dir ;
[1974]	836	MDirection::Convert toazel( dirType, MDirection::Ref( MDirection::AZEL, mf ) ) ;
	837	Vector<Double> azel = toazel( dir ).getAngle("rad").getValue() ;
[2002]	838	*azRF = (Float)azel(0) ;
	839	*elRF = (Float)azel(1) ;
[1974]	840	}
	841	else if ( refString(0,4) == "AZEL" ) {
[2002]	842	*azRF = (Float)dir(0) ;
	843	*elRF = (Float)dir(1) ;
[1974]	844	MDirection::Convert toj2000( dirType, MDirection::Ref( MDirection::J2000, mf ) ) ;
	845	Vector<Double> newdir = toj2000( dir ).getAngle("rad").getValue() ;
[2002]	846	*dirRF = newdir ;
[1974]	847	}
	848	else {
	849	MDirection::Convert toazel( dirType, MDirection::Ref( MDirection::AZEL, mf ) ) ;
	850	Vector<Double> azel = toazel( dir ).getAngle("rad").getValue() ;
	851	MDirection::Convert toj2000( dirType, MDirection::Ref( MDirection::J2000, mf ) ) ;
	852	Vector<Double> newdir = toj2000( dir ).getAngle("rad").getValue() ;
[2002]	853	*dirRF = newdir ;
	854	*azRF = (Float)azel(0) ;
	855	*elRF = (Float)azel(1) ;
[1974]	856	}
	857	if ( scanrate.size() != 0 ) {
[2002]	858	*scrRF = scanrate ;
[1974]	859	}
	860	else {
[2002]	861	*scrRF = defaultScanrate ;
[1974]	862	}
	863	}
[2002]	864	else {
	865	String ref = md.getRefString() ;
[2004]	866	//Vector<Double> defaultDir = srcDir ;
[2002]	867	MDirection::getType( dirType, "J2000" ) ;
	868	if ( ref != "J2000" ) {
	869	ROScalarMeasColumn<MEpoch> tmCol( pointtab, "TIME" ) ;
	870	mf.resetEpoch( tmCol( 0 ) ) ;
	871	MDirection::Convert toj2000( dirType, MDirection::Ref( MDirection::J2000, mf ) ) ;
	872	defaultDir = toj2000( defaultDir ).getAngle("rad").getValue() ;
[1974]	873	}
[2002]	874	mf.resetEpoch( mTimeB[irow] ) ;
	875	MDirection::Convert toazel( dirType, MDirection::Ref( MDirection::AZEL, mf ) ) ;
	876	Vector<Double> azel = toazel( defaultDir ).getAngle("rad").getValue() ;
	877	*azRF = (Float)azel(0) ;
	878	*elRF = (Float)azel(1) ;
	879	*dirRF = defaultDir ;
	880	*scrRF = defaultScanrate ;
[1974]	881	}
	882
[2002]	883	// Polarization dependent things
	884	for ( Int ipol = 0 ; ipol < npol ; ipol++ ) {
	885	// POLNO
	886	*polnoRF = polnos[ipol] ;
[1987]	887
[2019]	888	//*spRF = sp.row( ipol ) ;
	889	//*ucarrRF = fl.row( ipol ) ;
	890	//*tsysRF = tsys.row( ipol ) ;
	891	spRF.define( sp.row( ipol ) ) ;
	892	ucarrRF.define( fl.row( ipol ) ) ;
	893	tsysRF.define( tsys.row( ipol ) ) ;
[2002]	894	*tcalidRF = tcalids[ipol] ;
[1987]	895
[2002]	896	// Commit row
	897	stab.addRow() ;
	898	row.put( stab.nrow()-1 ) ;
[1987]	899	}
[2004]	900
	901	cycle++ ;
[1987]	902	}
[2002]	903	tpoolr->destroy( mIntervalCol ) ;
	904	tpoolr->destroy( mFlagRowCol ) ;
[1987]	905
[2033]	906	// time1 = gettimeofday_sec() ;
	907	// os_ << "end 5th iteration: " << time1 << " (" << time1-time0 << "sec)" << LogIO::POST ;
[1974]	908
	909	iter5.next() ;
	910	}
[1978]	911
	912
[1974]	913	iter4.next() ;
	914	}
[1978]	915
	916
[1974]	917	iter3.next() ;
	918	}
[1978]	919
[1990]	920
[1974]	921	iter2.next() ;
	922	}
[1978]	923
	924
[1974]	925	iter1.next() ;
	926	}
	927	if ( sdh.nbeam < nbeam ) sdh.nbeam = nbeam ;
[1978]	928
[1974]	929	iter0.next() ;
	930	}
	931
[1987]	932
	933	delete tpoolr ;
	934
	935
[1978]	936	// Table Keywords
[2078]	937	sdh.nif = ifmap.size() ;
[1987]	938	if ( ( telescopeName == "" ) \|\| ( antennaName == telescopeName ) ) {
[1974]	939	sdh.antennaname = antennaName ;
	940	}
	941	else {
	942	sdh.antennaname = telescopeName + "//" + antennaName ;
	943	}
	944	if ( stationName != "" ) {
	945	sdh.antennaname += "@" + stationName ;
	946	}
[1987]	947	ROArrayColumn<Double> pdirCol( pointtab, "DIRECTION" ) ;
	948	String dirref = pdirCol.keywordSet().asRecord("MEASINFO").asString("Ref") ;
[1974]	949	if ( dirref == "AZELGEO" \|\| dirref == "AZEL" ) {
	950	dirref = "J2000" ;
	951	}
	952	sscanf( dirref.chars()+1, "%f", &sdh.equinox ) ;
	953	sdh.epoch = "UTC" ;
	954	if (sdh.freqref == "TOPO") {
	955	sdh.freqref = "TOPOCENT";
	956	} else if (sdh.freqref == "GEO") {
	957	sdh.freqref = "GEOCENTR";
	958	} else if (sdh.freqref == "BARY") {
	959	sdh.freqref = "BARYCENT";
	960	} else if (sdh.freqref == "GALACTO") {
	961	sdh.freqref = "GALACTOC";
	962	} else if (sdh.freqref == "LGROUP") {
	963	sdh.freqref = "LOCALGRP";
	964	} else if (sdh.freqref == "CMB") {
	965	sdh.freqref = "CMBDIPOL";
	966	} else if (sdh.freqref == "REST") {
	967	sdh.freqref = "SOURCE";
	968	}
	969	table_->setHeader( sdh ) ;
[1987]	970
	971	// save path to POINTING table
[2022]	972	// 2011/3/2 TN
	973	// So far, path to original POINTING table is always stored
	974	// since sd tasks and regressions don't support getpt control
	975	//if ( !getPt_ ) {
[1987]	976	Path datapath( tablename_ ) ;
	977	String pTabName = datapath.absoluteName() + "/POINTING" ;
[1990]	978	stab.rwKeywordSet().define( "POINTING", pTabName ) ;
[2022]	979	//}
[1987]	980
	981	// for GBT
[2024]	982	if ( antennaName.contains( "GBT" ) ) {
[1987]	983	String goTabName = datapath.absoluteName() + "/GBT_GO" ;
[1990]	984	stab.rwKeywordSet().define( "GBT_GO", goTabName ) ;
[1987]	985	}
[2022]	986
	987	// for MS created from ASDM
	988	//mstable_.keywordSet().print(cout) ;
	989	const TableRecord &msKeys = mstable_.keywordSet() ;
	990	uInt nfields = msKeys.nfields() ;
	991	for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) {
	992	String name = msKeys.name( ifield ) ;
	993	//os_ << "name = " << name << LogIO::POST ;
	994	if ( name.find( "ASDM" ) != String::npos ) {
	995	String asdmpath = msKeys.asTable( ifield ).tableName() ;
	996	os_ << "ASDM table: " << asdmpath << LogIO::POST ;
	997	stab.rwKeywordSet().define( name, asdmpath ) ;
	998	}
	999	}
	1000
[2004]	1001	// double endSec = gettimeofday_sec() ;
	1002	// os_ << "end MSFiller::fill() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1003	}
	1004
	1005	void MSFiller::close()
	1006	{
[1987]	1007	//tablesel_.closeSubTables() ;
[1974]	1008	mstable_.closeSubTables() ;
[1987]	1009	//tablesel_.unlock() ;
[1974]	1010	mstable_.unlock() ;
	1011	}
	1012
[1987]	1013	Int MSFiller::getSrcType( Int stateId, boost::object_pool<ROTableColumn> *tpool )
[1974]	1014	{
[2004]	1015	// double startSec = gettimeofday_sec() ;
	1016	// os_ << "start MSFiller::getSrcType() startSec=" << startSec << LogIO::POST ;
[1974]	1017
	1018	MSState statetab = mstable_.state() ;
[1987]	1019	ROTableColumn *sharedCol ;
	1020	sharedCol = tpool->construct( statetab, "OBS_MODE" ) ;
	1021	String obsMode = sharedCol->asString( stateId ) ;
	1022	tpool->destroy( sharedCol ) ;
	1023	sharedCol = tpool->construct( statetab, "SIG" ) ;
	1024	Bool sig = sharedCol->asBool( stateId ) ;
	1025	tpool->destroy( sharedCol ) ;
	1026	sharedCol = tpool->construct( statetab, "REF" ) ;
	1027	Bool ref = sharedCol->asBool( stateId ) ;
	1028	tpool->destroy( sharedCol ) ;
	1029	sharedCol = tpool->construct( statetab, "CAL" ) ;
	1030	Double cal = (Double)(sharedCol->asdouble( stateId )) ;
	1031	tpool->destroy( sharedCol ) ;
[1974]	1032	//os_ << "OBS_MODE = " << obsMode << LogIO::POST ;
	1033
	1034	// determine separator
	1035	String sep = "" ;
[2039]	1036	String tmpStr = obsMode.substr( 0, obsMode.find_first_of( "," ) ) ;
[2049]	1037	//os_ << "tmpStr = " << tmpStr << LogIO::POST ;
[2039]	1038	//if ( obsMode.find( ":" ) != String::npos ) {
	1039	if ( tmpStr.find( ":" ) != String::npos ) {
[1974]	1040	sep = ":" ;
	1041	}
[2039]	1042	//else if ( obsMode.find( "." ) != String::npos ) {
	1043	else if ( tmpStr.find( "." ) != String::npos ) {
[1974]	1044	sep = "." ;
	1045	}
[2039]	1046	//else if ( obsMode.find( "_" ) != String::npos ) {
	1047	else if ( tmpStr.find( "_" ) != String::npos ) {
	1048	sep = "_" ;
	1049	}
[2049]	1050	//os_ << "separator = " << sep << LogIO::POST ;
[2028]	1051
[1974]	1052	// determine SRCTYPE
	1053	Int srcType = SrcType::NOTYPE ;
	1054	if ( sep == ":" ) {
	1055	// sep == ":"
	1056	//
	1057	// GBT case
	1058	//
	1059	// obsMode1=Nod
	1060	// NOD
	1061	// obsMode1=OffOn
	1062	// obsMode2=PSWITCHON: PSON
	1063	// obsMode2=PSWITCHOFF: PSOFF
	1064	// obsMode1=??
	1065	// obsMode2=FSWITCH:
	1066	// SIG=1: FSON
	1067	// REF=1: FSOFF
[1987]	1068	// Calibration scan if CAL != 0
[1974]	1069	Int epos = obsMode.find_first_of( sep ) ;
	1070	Int nextpos = obsMode.find_first_of( sep, epos+1 ) ;
	1071	String obsMode1 = obsMode.substr( 0, epos ) ;
	1072	String obsMode2 = obsMode.substr( epos+1, nextpos-epos-1 ) ;
	1073	if ( obsMode1 == "Nod" ) {
	1074	srcType = SrcType::NOD ;
	1075	}
	1076	else if ( obsMode1 == "OffOn" ) {
	1077	if ( obsMode2 == "PSWITCHON" ) srcType = SrcType::PSON ;
	1078	if ( obsMode2 == "PSWITCHOFF" ) srcType = SrcType::PSOFF ;
	1079	}
	1080	else {
	1081	if ( obsMode2 == "FSWITCH" ) {
	1082	if ( sig ) srcType = SrcType::FSON ;
	1083	if ( ref ) srcType = SrcType::FSOFF ;
	1084	}
	1085	}
[1987]	1086	if ( cal > 0.0 ) {
	1087	if ( srcType == SrcType::NOD )
	1088	srcType = SrcType::NODCAL ;
	1089	else if ( srcType == SrcType::PSON )
	1090	srcType = SrcType::PONCAL ;
	1091	else if ( srcType == SrcType::PSOFF )
	1092	srcType = SrcType::POFFCAL ;
	1093	else if ( srcType == SrcType::FSON )
	1094	srcType = SrcType::FONCAL ;
	1095	else if ( srcType == SrcType::FSOFF )
	1096	srcType = SrcType::FOFFCAL ;
	1097	else
	1098	srcType = SrcType::CAL ;
	1099	}
[1974]	1100	}
	1101	else if ( sep == "." ) {
	1102	// sep == "."
	1103	//
[2039]	1104	// ALMA & EVLA case (MS via ASDM) before3.1
[1974]	1105	//
	1106	// obsMode1=CALIBRATE_*
	1107	// obsMode2=ON_SOURCE: PONCAL
	1108	// obsMode2=OFF_SOURCE: POFFCAL
	1109	// obsMode1=OBSERVE_TARGET
	1110	// obsMode2=ON_SOURCE: PON
	1111	// obsMode2=OFF_SOURCE: POFF
[2028]	1112	string substr[2] ;
	1113	int numSubstr = split( obsMode, substr, 2, "," ) ;
	1114	//os_ << "numSubstr = " << numSubstr << LogIO::POST ;
	1115	//for ( int i = 0 ; i < numSubstr ; i++ )
	1116	//os_ << "substr[" << i << "] = " << substr[i] << LogIO::POST ;
	1117	String obsType( substr[0] ) ;
	1118	//os_ << "obsType = " << obsType << LogIO::POST ;
	1119	Int epos = obsType.find_first_of( sep ) ;
	1120	Int nextpos = obsType.find_first_of( sep, epos+1 ) ;
	1121	String obsMode1 = obsType.substr( 0, epos ) ;
	1122	String obsMode2 = obsType.substr( epos+1, nextpos-epos-1 ) ;
[2035]	1123	//os_ << "obsMode1 = " << obsMode1 << LogIO::POST ;
	1124	//os_ << "obsMode2 = " << obsMode2 << LogIO::POST ;
[1974]	1125	if ( obsMode1.find( "CALIBRATE_" ) == 0 ) {
	1126	if ( obsMode2 == "ON_SOURCE" ) srcType = SrcType::PONCAL ;
	1127	if ( obsMode2 == "OFF_SOURCE" ) srcType = SrcType::POFFCAL ;
	1128	}
	1129	else if ( obsMode1 == "OBSERVE_TARGET" ) {
	1130	if ( obsMode2 == "ON_SOURCE" ) srcType = SrcType::PSON ;
	1131	if ( obsMode2 == "OFF_SOURCE" ) srcType = SrcType::PSOFF ;
	1132	}
	1133	}
[2039]	1134	else if ( sep == "_" ) {
	1135	// sep == "_"
	1136	//
	1137	// ALMA & EVLA case (MS via ASDM) after 3.2
	1138	//
	1139	// obsMode1=CALIBRATE_*
	1140	// obsMode2=ON_SOURCE: PONCAL
	1141	// obsMode2=OFF_SOURCE: POFFCAL
	1142	// obsMode1=OBSERVE_TARGET
	1143	// obsMode2=ON_SOURCE: PON
	1144	// obsMode2=OFF_SOURCE: POFF
	1145	string substr[2] ;
	1146	int numSubstr = split( obsMode, substr, 2, "," ) ;
[2041]	1147	//os_ << "numSubstr = " << numSubstr << LogIO::POST ;
[2039]	1148	//for ( int i = 0 ; i < numSubstr ; i++ )
	1149	//os_ << "substr[" << i << "] = " << substr[i] << LogIO::POST ;
	1150	String obsType( substr[0] ) ;
	1151	//os_ << "obsType = " << obsType << LogIO::POST ;
	1152	string substr2[4] ;
	1153	int numSubstr2 = split( obsType, substr2, 4, sep ) ;
	1154	//Int epos = obsType.find_first_of( sep ) ;
	1155	//Int nextpos = obsType.find_first_of( sep, epos+1 ) ;
	1156	//String obsMode1 = obsType.substr( 0, epos ) ;
	1157	//String obsMode2 = obsType.substr( epos+1, nextpos-epos-1 ) ;
	1158	String obsMode1( substr2[0] ) ;
	1159	String obsMode2( substr2[2] ) ;
	1160	//os_ << "obsMode1 = " << obsMode1 << LogIO::POST ;
	1161	//os_ << "obsMode2 = " << obsMode2 << LogIO::POST ;
	1162	if ( obsMode1.find( "CALIBRATE" ) == 0 ) {
	1163	if ( obsMode2 == "ON" ) srcType = SrcType::PONCAL ;
	1164	if ( obsMode2 == "OFF" ) srcType = SrcType::POFFCAL ;
	1165	}
	1166	else if ( obsMode1 == "OBSERVE" ) {
	1167	if ( obsMode2 == "ON" ) srcType = SrcType::PSON ;
	1168	if ( obsMode2 == "OFF" ) srcType = SrcType::PSOFF ;
	1169	}
	1170	}
[1974]	1171	else {
	1172	if ( sig ) srcType = SrcType::SIG ;
	1173	if ( ref ) srcType = SrcType::REF ;
	1174	}
	1175
	1176	//os_ << "srcType = " << srcType << LogIO::POST ;
[2004]	1177	// double endSec = gettimeofday_sec() ;
	1178	// os_ << "end MSFiller::getSrcType() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1179	return srcType ;
	1180	}
	1181
[2002]	1182	//Vector<uInt> MSFiller::getPolNo( Int corrType )
	1183	Block<uInt> MSFiller::getPolNo( Int corrType )
[1974]	1184	{
[2004]	1185	// double startSec = gettimeofday_sec() ;
	1186	// os_ << "start MSFiller::getPolNo() startSec=" << startSec << LogIO::POST ;
[2002]	1187	Block<uInt> polno( 1 ) ;
[1974]	1188
	1189	if ( corrType == Stokes::I \|\| corrType == Stokes::RR \|\| corrType == Stokes::XX ) {
	1190	polno = 0 ;
	1191	}
	1192	else if ( corrType == Stokes::Q \|\| corrType == Stokes::LL \|\| corrType == Stokes::YY ) {
	1193	polno = 1 ;
	1194	}
	1195	else if ( corrType == Stokes::U ) {
	1196	polno = 2 ;
	1197	}
	1198	else if ( corrType == Stokes::V ) {
	1199	polno = 3 ;
	1200	}
	1201	else if ( corrType == Stokes::RL \|\| corrType == Stokes::XY \|\| corrType == Stokes::LR \|\| corrType == Stokes::RL ) {
	1202	polno.resize( 2 ) ;
	1203	polno[0] = 2 ;
	1204	polno[1] = 3 ;
	1205	}
	1206	else if ( corrType == Stokes::Plinear ) {
	1207	polno[0] = 1 ;
	1208	}
	1209	else if ( corrType == Stokes::Pangle ) {
	1210	polno[0] = 2 ;
	1211	}
	1212	else {
	1213	polno = 99 ;
	1214	}
	1215	//os_ << "polno = " << polno << LogIO::POST ;
[2004]	1216	// double endSec = gettimeofday_sec() ;
	1217	// os_ << "end MSFiller::getPolNo() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1218
	1219	return polno ;
	1220	}
	1221
	1222	String MSFiller::getPolType( Int corrType )
	1223	{
[2004]	1224	// double startSec = gettimeofday_sec() ;
	1225	// os_ << "start MSFiller::getPolType() startSec=" << startSec << LogIO::POST ;
[1974]	1226	String poltype = "" ;
	1227
	1228	if ( corrType == Stokes::I \|\| corrType == Stokes::Q \|\| corrType == Stokes::U \|\| corrType == Stokes::V )
	1229	poltype = "stokes" ;
	1230	else if ( corrType == Stokes::XX \|\| corrType == Stokes::YY \|\| corrType == Stokes::XY \|\| corrType == Stokes::YX )
	1231	poltype = "linear" ;
	1232	else if ( corrType == Stokes::RR \|\| corrType == Stokes::LL \|\| corrType == Stokes::RL \|\| corrType == Stokes::LR )
	1233	poltype = "circular" ;
	1234	else if ( corrType == Stokes::Plinear \|\| corrType == Stokes::Pangle )
	1235	poltype = "linpol" ;
	1236
[2004]	1237	// double endSec = gettimeofday_sec() ;
	1238	// os_ << "end MSFiller::getPolType() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1239	return poltype ;
	1240	}
	1241
	1242	void MSFiller::fillWeather()
	1243	{
[2004]	1244	// double startSec = gettimeofday_sec() ;
	1245	// os_ << "start MSFiller::fillWeather() startSec=" << startSec << LogIO::POST ;
	1246
	1247	if ( !isWeather_ ) {
	1248	// add dummy row
	1249	table_->weather().table().addRow(1,True) ;
	1250	return ;
	1251	}
	1252
[1987]	1253	Table mWeather = mstable_.weather() ;
	1254	//Table mWeatherSel = mWeather( mWeather.col("ANTENNA_ID") == antenna_ ).sort("TIME") ;
	1255	Table mWeatherSel( mWeather( mWeather.col("ANTENNA_ID") == antenna_ ).sort("TIME") ) ;
[1974]	1256	//os_ << "mWeatherSel.nrow() = " << mWeatherSel.nrow() << LogIO::POST ;
	1257	if ( mWeatherSel.nrow() == 0 ) {
[2025]	1258	os_ << "No rows with ANTENNA_ID = " << antenna_ << " in WEATHER table, Try -1..." << LogIO::POST ;
[1987]	1259	mWeatherSel = Table( MSWeather( mWeather( mWeather.col("ANTENNA_ID") == -1 ) ) ) ;
[1974]	1260	if ( mWeatherSel.nrow() == 0 ) {
	1261	os_ << "No rows in WEATHER table" << LogIO::POST ;
	1262	}
	1263	}
[1987]	1264	uInt wnrow = mWeatherSel.nrow() ;
[1974]	1265	//os_ << "wnrow = " << wnrow << LogIO::POST ;
	1266
	1267	if ( wnrow == 0 )
	1268	return ;
	1269
	1270	Table wtab = table_->weather().table() ;
	1271	wtab.addRow( wnrow ) ;
	1272
[1987]	1273	ScalarColumn<Float> *fCol ;
	1274	ROScalarColumn<Float> *sharedFloatCol ;
	1275	if ( mWeatherSel.tableDesc().isColumn( "TEMPERATURE" ) ) {
	1276	fCol = new ScalarColumn<Float>( wtab, "TEMPERATURE" ) ;
	1277	sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "TEMPERATURE" ) ;
	1278	fCol->putColumn( *sharedFloatCol ) ;
	1279	delete sharedFloatCol ;
	1280	delete fCol ;
	1281	}
	1282	if ( mWeatherSel.tableDesc().isColumn( "PRESSURE" ) ) {
	1283	fCol = new ScalarColumn<Float>( wtab, "PRESSURE" ) ;
	1284	sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "PRESSURE" ) ;
	1285	fCol->putColumn( *sharedFloatCol ) ;
	1286	delete sharedFloatCol ;
	1287	delete fCol ;
	1288	}
	1289	if ( mWeatherSel.tableDesc().isColumn( "REL_HUMIDITY" ) ) {
	1290	fCol = new ScalarColumn<Float>( wtab, "HUMIDITY" ) ;
	1291	sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "REL_HUMIDITY" ) ;
	1292	fCol->putColumn( *sharedFloatCol ) ;
	1293	delete sharedFloatCol ;
	1294	delete fCol ;
	1295	}
	1296	if ( mWeatherSel.tableDesc().isColumn( "WIND_SPEED" ) ) {
	1297	fCol = new ScalarColumn<Float>( wtab, "WINDSPEED" ) ;
	1298	sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "WIND_SPEED" ) ;
	1299	fCol->putColumn( *sharedFloatCol ) ;
	1300	delete sharedFloatCol ;
	1301	delete fCol ;
	1302	}
	1303	if ( mWeatherSel.tableDesc().isColumn( "WIND_DIRECTION" ) ) {
	1304	fCol = new ScalarColumn<Float>( wtab, "WINDAZ" ) ;
	1305	sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "WIND_DIRECTION" ) ;
	1306	fCol->putColumn( *sharedFloatCol ) ;
	1307	delete sharedFloatCol ;
	1308	delete fCol ;
	1309	}
[1974]	1310	ScalarColumn<uInt> idCol( wtab, "ID" ) ;
[1987]	1311	for ( uInt irow = 0 ; irow < wnrow ; irow++ )
	1312	idCol.put( irow, irow ) ;
[1974]	1313
[1987]	1314	ROScalarQuantColumn<Double> tqCol( mWeatherSel, "TIME" ) ;
	1315	ROScalarColumn<Double> tCol( mWeatherSel, "TIME" ) ;
	1316	String tUnit = tqCol.getUnits() ;
	1317	mwTime_ = tCol.getColumn() ;
[1974]	1318	if ( tUnit == "d" )
	1319	mwTime_ *= 86400.0 ;
[1987]	1320	tqCol.attach( mWeatherSel, "INTERVAL" ) ;
	1321	tCol.attach( mWeatherSel, "INTERVAL" ) ;
	1322	String iUnit = tqCol.getUnits() ;
	1323	mwInterval_ = tCol.getColumn() ;
[1974]	1324	if ( iUnit == "d" )
	1325	mwInterval_ *= 86400.0 ;
	1326	//os_ << "mwTime[0] = " << mwTime_[0] << " mwInterval[0] = " << mwInterval_[0] << LogIO::POST ;
[2004]	1327	// double endSec = gettimeofday_sec() ;
	1328	// os_ << "end MSFiller::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1329	}
	1330
	1331	void MSFiller::fillFocus()
	1332	{
[2004]	1333	// double startSec = gettimeofday_sec() ;
	1334	// os_ << "start MSFiller::fillFocus() startSec=" << startSec << LogIO::POST ;
[1974]	1335	// tentative
	1336	Table tab = table_->focus().table() ;
	1337	tab.addRow( 1 ) ;
	1338	ScalarColumn<uInt> idCol( tab, "ID" ) ;
	1339	idCol.put( 0, 0 ) ;
[2004]	1340	// double endSec = gettimeofday_sec() ;
	1341	// os_ << "end MSFiller::fillFocus() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1342	}
	1343
[2002]	1344	void MSFiller::fillTcal( boost::object_pool<ROTableColumn> *tpoolr )
[1974]	1345	{
[2004]	1346	// double startSec = gettimeofday_sec() ;
	1347	// os_ << "start MSFiller::fillTcal() startSec=" << startSec << LogIO::POST ;
[1987]	1348
[2004]	1349	if ( !isSysCal_ ) {
	1350	// add dummy row
[2025]	1351	os_ << "No SYSCAL rows" << LogIO::POST ;
[2004]	1352	table_->tcal().table().addRow(1,True) ;
[2021]	1353	Vector<Float> defaultTcal( 1, 1.0 ) ;
	1354	ArrayColumn<Float> tcalCol( table_->tcal().table(), "TCAL" ) ;
	1355	tcalCol.put( 0, defaultTcal ) ;
[2004]	1356	return ;
	1357	}
	1358
[1987]	1359	Table sctab = mstable_.sysCal() ;
[1974]	1360	if ( sctab.nrow() == 0 ) {
[2025]	1361	os_ << "No SYSCAL rows" << LogIO::POST ;
[1974]	1362	return ;
	1363	}
[1987]	1364	Table sctabsel( sctab( sctab.col("ANTENNA_ID") == antenna_ ) ) ;
[1974]	1365	if ( sctabsel.nrow() == 0 ) {
[2025]	1366	os_ << "No SYSCAL rows" << LogIO::POST ;
[1974]	1367	return ;
	1368	}
[1987]	1369	ROArrayColumn<Float> *tmpTcalCol = new ROArrayColumn<Float>( sctabsel, "TCAL" ) ;
	1370	uInt npol = tmpTcalCol->shape( 0 )(0) ;
	1371	delete tmpTcalCol ;
[1974]	1372	//os_ << "fillTcal(): npol = " << npol << LogIO::POST ;
	1373	Table tab = table_->tcal().table() ;
	1374	ArrayColumn<Float> tcalCol( tab, "TCAL" ) ;
[1987]	1375	ROTableColumn *sharedCol ;
[1974]	1376	uInt oldnr = 0 ;
	1377	uInt newnr = 0 ;
[2002]	1378	TableRow row( tab ) ;
	1379	TableRecord &trec = row.record() ;
	1380	RecordFieldPtr<uInt> idRF( trec, "ID" ) ;
	1381	RecordFieldPtr<String> timeRF( trec, "TIME" ) ;
	1382	RecordFieldPtr< Array<Float> > tcalRF( trec, "TCAL" ) ;
[1974]	1383	TableIterator iter0( sctabsel, "FEED_ID" ) ;
	1384	while( !iter0.pastEnd() ) {
[1987]	1385	Table t0 = iter0.table() ;
[1988]	1386	sharedCol = tpoolr->construct( t0, "FEED_ID" ) ;
[1987]	1387	Int feedId = sharedCol->asInt( 0 ) ;
[1988]	1388	tpoolr->destroy( sharedCol ) ;
[1974]	1389	TableIterator iter1( t0, "SPECTRAL_WINDOW_ID" ) ;
	1390	while( !iter1.pastEnd() ) {
[1988]	1391	Table t1 = iter1.table() ;
	1392	sharedCol = tpoolr->construct( t1, "SPECTRAL_WINDOW_ID" ) ;
[1987]	1393	Int spwId = sharedCol->asInt( 0 ) ;
[1988]	1394	tpoolr->destroy( sharedCol ) ;
[2002]	1395	tmpTcalCol = new ROArrayColumn<Float>( t1, colTcal_ ) ;
	1396	ROScalarQuantColumn<Double> scTimeCol( t1, "TIME" ) ;
	1397	Vector<uInt> idminmax( 2, oldnr ) ;
	1398	for ( uInt irow = 0 ; irow < t1.nrow() ; irow++ ) {
	1399	String sTime = MVTime( scTimeCol(irow) ).string( MVTime::YMD ) ;
	1400	*timeRF = sTime ;
[1988]	1401	uInt idx = oldnr ;
[2002]	1402	Matrix<Float> subtcal = (*tmpTcalCol)( irow ) ;
[1988]	1403	for ( uInt ipol = 0 ; ipol < npol ; ipol++ ) {
[2002]	1404	*idRF = idx++ ;
[2019]	1405	//*tcalRF = subtcal.row( ipol ) ;
	1406	tcalRF.define( subtcal.row( ipol ) ) ;
[2002]	1407
	1408	// commit row
	1409	tab.addRow() ;
	1410	row.put( tab.nrow()-1 ) ;
	1411
	1412	newnr++ ;
[1974]	1413	}
[2002]	1414	idminmax[0] = oldnr ;
[1988]	1415	idminmax[1] = newnr - 1 ;
	1416	oldnr = newnr ;
	1417
[1990]	1418	String key = keyTcal( feedId, spwId, sTime ) ;
[1988]	1419	tcalrec_.define( key, idminmax ) ;
[1974]	1420	}
[2002]	1421	delete tmpTcalCol ;
[1974]	1422	iter1++ ;
	1423	}
	1424	iter0++ ;
	1425	}
	1426
	1427	//tcalrec_.print( std::cout ) ;
[2004]	1428	// double endSec = gettimeofday_sec() ;
	1429	// os_ << "end MSFiller::fillTcal() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1430	}
	1431
	1432	uInt MSFiller::getWeatherId( uInt idx, Double wtime )
	1433	{
[2004]	1434	// double startSec = gettimeofday_sec() ;
	1435	// os_ << "start MSFiller::getWeatherId() startSec=" << startSec << LogIO::POST ;
[1974]	1436	uInt nrow = mwTime_.size() ;
[2019]	1437	if ( nrow < 2 )
[1974]	1438	return 0 ;
	1439	uInt wid = nrow ;
	1440	for ( uInt i = idx ; i < nrow-1 ; i++ ) {
	1441	Double tStart = mwTime_[i]-0.5*mwInterval_[i] ;
	1442	// use of INTERVAL column is problematic
	1443	// since there are "blank" time of weather monitoring
	1444	//Double tEnd = tStart + mwInterval_[i] ;
	1445	Double tEnd = mwTime_[i+1]-0.5*mwInterval_[i+1] ;
	1446	//os_ << "tStart = " << tStart << " dtEnd = " << tEnd-tStart << " dwtime = " << wtime-tStart << LogIO::POST ;
	1447	if ( wtime >= tStart && wtime <= tEnd ) {
	1448	wid = i ;
	1449	break ;
	1450	}
	1451	}
	1452	if ( wid == nrow ) {
	1453	uInt i = nrow - 1 ;
	1454	Double tStart = mwTime_[i-1]+0.5*mwInterval_[i-1] ;
	1455	Double tEnd = mwTime_[i]+0.5*mwInterval_[i] ;
	1456	//os_ << "tStart = " << tStart << " dtEnd = " << tEnd-tStart << " dwtime = " << wtime-tStart << LogIO::POST ;
	1457	if ( wtime >= tStart && wtime <= tEnd )
[2021]	1458	wid = i-1 ;
	1459	else
[1974]	1460	wid = i ;
	1461	}
	1462
	1463	//if ( wid == nrow )
	1464	//os_ << LogIO::WARN << "Couldn't find correct WEATHER_ID for time " << wtime << LogIO::POST ;
	1465
[2004]	1466	// double endSec = gettimeofday_sec() ;
	1467	// os_ << "end MSFiller::getWeatherId() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1468	return wid ;
	1469	}
	1470
[2017]	1471	void MSFiller::getSysCalTime( Vector<MEpoch> &scTime, Vector<Double> &scInterval, Block<MEpoch> &tcol, Block<Int> &tidx )
[1974]	1472	{
[2004]	1473	// double startSec = gettimeofday_sec() ;
	1474	// os_ << "start MSFiller::getSysCalTime() startSec=" << startSec << LogIO::POST ;
	1475
	1476	if ( !isSysCal_ )
	1477	return ;
	1478
[2017]	1479	uInt nrow = tidx.nelements() ;
[2002]	1480	if ( scTime.nelements() == 0 )
[1993]	1481	return ;
[2019]	1482	else if ( scTime.nelements() == 1 ) {
	1483	tidx[0] = 0 ;
	1484	return ;
	1485	}
[2002]	1486	uInt scnrow = scTime.nelements() ;
[1974]	1487	uInt idx = 0 ;
	1488	const Double half = 0.5e0 ;
[2003]	1489	// execute binary search
	1490	idx = binarySearch( scTime, tcol[0].get( "s" ).getValue() ) ;
	1491	if ( idx != 0 )
	1492	idx -= 1 ;
[1974]	1493	for ( uInt i = 0 ; i < nrow ; i++ ) {
[2002]	1494	Double t = tcol[i].get( "s" ).getValue() ;
[2017]	1495	Double tsc = scTime[0].get( "s" ).getValue() ;
	1496	if ( t < tsc ) {
	1497	tidx[i] = 0 ;
	1498	continue ;
	1499	}
[1974]	1500	for ( uInt j = idx ; j < scnrow-1 ; j++ ) {
[2002]	1501	Double tsc1 = scTime[j].get( "s" ).getValue() ;
	1502	Double dt1 = scInterval[j] ;
	1503	Double tsc2 = scTime[j+1].get( "s" ).getValue() ;
	1504	Double dt2 = scInterval[j+1] ;
[1974]	1505	if ( t > tsc1-halfdt1 && t <= tsc2-halfdt2 ) {
[2002]	1506	tidx[i] = j ;
[1974]	1507	idx = j ;
	1508	break ;
	1509	}
	1510	}
[2017]	1511	if ( tidx[i] == -1 ) {
[2022]	1512	// Double tsc = scTime[scnrow-1].get( "s" ).getValue() ;
	1513	// Double dt = scInterval[scnrow-1] ;
[2017]	1514	// if ( t <= tsc+0.5*dt ) {
	1515	// tidx[i] = scnrow-1 ;
	1516	// }
	1517	tidx[i] = scnrow-1 ;
[1974]	1518	}
	1519	}
[2004]	1520	// double endSec = gettimeofday_sec() ;
	1521	// os_ << "end MSFiller::getSysCalTime() endSec=" << endSec << " (" << endSec-startSec << "sec) scnrow = " << scnrow << " tcol.nelements = " << tcol.nelements() << LogIO::POST ;
[1993]	1522	return ;
[1974]	1523	}
	1524
[2004]	1525	Block<uInt> MSFiller::getTcalId( Int fid, Int spwid, MEpoch &t )
	1526	{
[2002]	1527	// double startSec = gettimeofday_sec() ;
[2004]	1528	// os_ << "start MSFiller::getTcalId() startSec=" << startSec << LogIO::POST ;
	1529	//if ( table_->tcal().table().nrow() == 0 ) {
	1530	if ( !isSysCal_ ) {
[1988]	1531	os_ << "No TCAL rows" << LogIO::POST ;
[2002]	1532	Block<uInt> tcalids( 0 ) ;
[1988]	1533	return tcalids ;
	1534	}
[2004]	1535	//String sctime = MVTime( Quantum<Double>(t,"s") ).string(MVTime::YMD) ;
	1536	String sctime = MVTime( t.getValue() ).string(MVTime::YMD) ;
[1990]	1537	String key = keyTcal( fid, spwid, sctime ) ;
[1988]	1538	if ( !tcalrec_.isDefined( key ) ) {
[1974]	1539	os_ << "No TCAL rows" << LogIO::POST ;
[2002]	1540	Block<uInt> tcalids( 0 ) ;
[1974]	1541	return tcalids ;
	1542	}
[1988]	1543	Vector<uInt> ids = tcalrec_.asArrayuInt( key ) ;
	1544	uInt npol = ids[1] - ids[0] + 1 ;
[2002]	1545	Block<uInt> tcalids( npol ) ;
[1988]	1546	tcalids[0] = ids[0] ;
	1547	tcalids[1] = ids[1] ;
	1548	for ( uInt ipol = 2 ; ipol < npol ; ipol++ )
	1549	tcalids[ipol] = ids[0] + ipol - 1 ;
	1550
[2004]	1551	// double endSec = gettimeofday_sec() ;
	1552	// os_ << "end MSFiller::getTcalId() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1553	return tcalids ;
	1554	}
	1555
[1987]	1556	uInt MSFiller::getDirection( uInt idx, Vector<Double> &dir, Vector<Double> &srate, String &ref, MSPointing &tab, Double t )
[1974]	1557	{
[2004]	1558	// double startSec = gettimeofday_sec() ;
	1559	// os_ << "start MSFiller::getDirection() startSec=" << startSec << LogIO::POST ;
[1974]	1560	// assume that cols is sorted by TIME
	1561	Bool doInterp = False ;
[1987]	1562	//uInt nrow = cols.nrow() ;
	1563	uInt nrow = tab.nrow() ;
[1974]	1564	if ( nrow == 0 )
	1565	return 0 ;
[1987]	1566	ROScalarMeasColumn<MEpoch> tcol( tab, "TIME" ) ;
	1567	ROArrayMeasColumn<MDirection> dmcol( tab, "DIRECTION" ) ;
	1568	ROArrayColumn<Double> dcol( tab, "DIRECTION" ) ;
[2003]	1569	// binary search if idx == 0
	1570	if ( idx == 0 ) {
	1571	uInt nrowb = 75000 ;
[2004]	1572	if ( nrow > nrowb ) {
[2003]	1573	uInt nblock = nrow / nrowb + 1 ;
	1574	for ( uInt iblock = 0 ; iblock < nblock ; iblock++ ) {
[2004]	1575	uInt high = min( nrowb, nrow-iblock*nrowb ) ;
[2003]	1576
	1577	if ( tcol( high-1 ).get( "s" ).getValue() < t ) {
[2004]	1578	idx = iblock * nrowb ;
[2003]	1579	continue ;
	1580	}
	1581
	1582	Vector<MEpoch> tarr( high ) ;
	1583	for ( uInt irow = 0 ; irow < high ; irow++ ) {
[2004]	1584	tarr[irow] = tcol( iblock*nrowb+irow ) ;
[2003]	1585	}
	1586
	1587	uInt bidx = binarySearch( tarr, t ) ;
	1588
[2004]	1589	idx = iblock * nrowb + bidx ;
[2003]	1590	break ;
	1591	}
	1592	}
	1593	else {
	1594	Vector<MEpoch> tarr( nrow ) ;
	1595	for ( uInt irow = 0 ; irow < nrow ; irow++ ) {
	1596	tarr[irow] = tcol( irow ) ;
	1597	}
	1598	idx = binarySearch( tarr, t ) ;
	1599	}
	1600	}
[1974]	1601	// ensure that tcol(idx) < t
	1602	//os_ << "tcol(idx) = " << tcol(idx).get("s").getValue() << " t = " << t << " diff = " << tcol(idx).get("s").getValue()-t << endl ;
	1603	while ( tcol(idx).get("s").getValue() > t && idx > 0 )
	1604	idx-- ;
	1605	//os_ << "idx = " << idx << LogIO::POST ;
	1606
	1607	// index search
	1608	for ( uInt i = idx ; i < nrow ; i++ ) {
	1609	Double tref = tcol( i ).get( "s" ).getValue() ;
	1610	if ( tref == t ) {
	1611	idx = i ;
	1612	break ;
	1613	}
	1614	else if ( tref > t ) {
	1615	if ( i == 0 ) {
	1616	idx = i ;
	1617	}
	1618	else {
	1619	idx = i-1 ;
	1620	doInterp = True ;
	1621	}
	1622	break ;
	1623	}
	1624	else {
	1625	idx = nrow - 1 ;
	1626	}
	1627	}
	1628	//os_ << "searched idx = " << idx << LogIO::POST ;
	1629
	1630	//os_ << "dmcol(idx).shape() = " << dmcol(idx).shape() << LogIO::POST ;
	1631	IPosition ip( dmcol(idx).shape().nelements(), 0 ) ;
	1632	//os_ << "ip = " << ip << LogIO::POST ;
	1633	ref = dmcol(idx)(ip).getRefString() ;
	1634	//os_ << "ref = " << ref << LogIO::POST ;
	1635	if ( doInterp ) {
	1636	//os_ << "do interpolation" << LogIO::POST ;
	1637	//os_ << "dcol(idx).shape() = " << dcol(idx).shape() << LogIO::POST ;
	1638	Double tref0 = tcol(idx).get("s").getValue() ;
	1639	Double tref1 = tcol(idx+1).get("s").getValue() ;
[1987]	1640	Matrix<Double> mdir0 = dcol( idx ) ;
	1641	Matrix<Double> mdir1 = dcol( idx+1 ) ;
	1642	Vector<Double> dir0 = mdir0.column( 0 ) ;
[1974]	1643	//os_ << "dir0 = " << dir0 << LogIO::POST ;
[1987]	1644	Vector<Double> dir1 = mdir1.column( 0 ) ;
[1974]	1645	//os_ << "dir1 = " << dir1 << LogIO::POST ;
	1646	Double dt0 = t - tref0 ;
	1647	Double dt1 = tref1 - t ;
	1648	dir.reference( (dt0dir1+dt1dir0)/(dt0+dt1) ) ;
[1987]	1649	if ( mdir0.ncolumn() > 1 ) {
	1650	if ( dt0 >= dt1 )
	1651	srate.reference( mdir0.column( 1 ) ) ;
	1652	else
	1653	srate.reference( mdir1.column( 1 ) ) ;
[1974]	1654	}
	1655	//os_ << "dir = " << dir << LogIO::POST ;
	1656	}
	1657	else {
	1658	//os_ << "no interpolation" << LogIO::POST ;
[1987]	1659	Matrix<Double> mdir0 = dcol( idx ) ;
	1660	dir.reference( mdir0.column( 0 ) ) ;
	1661	if ( mdir0.ncolumn() > 1 )
	1662	srate.reference( mdir0.column( 1 ) ) ;
[1974]	1663	}
	1664
[2004]	1665	// double endSec = gettimeofday_sec() ;
	1666	// os_ << "end MSFiller::getDirection() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
[1974]	1667	return idx ;
	1668	}
	1669
[1990]	1670	String MSFiller::keyTcal( Int feedid, Int spwid, String stime )
	1671	{
	1672	String sfeed = "FEED" + String::toString( feedid ) ;
	1673	String sspw = "SPW" + String::toString( spwid ) ;
	1674	return sfeed+":"+sspw+":"+stime ;
	1675	}
	1676
[2003]	1677	uInt MSFiller::binarySearch( Vector<MEpoch> &timeList, Double target )
	1678	{
	1679	Int low = 0 ;
	1680	Int high = timeList.nelements() ;
	1681	uInt idx = 0 ;
	1682
	1683	while ( low <= high ) {
	1684	idx = (Int)( 0.5 * ( low + high ) ) ;
	1685	Double t = timeList[idx].get( "s" ).getValue() ;
	1686	if ( t < target )
	1687	low = idx + 1 ;
	1688	else if ( t > target )
	1689	high = idx - 1 ;
	1690	else
	1691	return idx ;
	1692	}
	1693
	1694	idx = max( 0, min( low, high ) ) ;
	1695
	1696	return idx ;
	1697
	1698	}
	1699
[1974]	1700	} ;
	1701

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