[102] | 1 | from asap._asap import sdtable |
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[226] | 2 | from asap import rcParams |
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[189] | 3 | from numarray import ones,zeros |
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[102] | 4 | import sys |
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| 5 | |
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| 6 | class scantable(sdtable): |
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| 7 | """ |
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| 8 | The ASAP container for scans |
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| 9 | """ |
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[113] | 10 | |
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[102] | 11 | def __init__(self, filename): |
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| 12 | """ |
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| 13 | Create a scantable from a saved one or make a reference |
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| 14 | Parameters: |
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[181] | 15 | filename: the name of an asap table on disk |
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| 16 | or |
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| 17 | the name of a rpfits/sdfits/ms file |
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| 18 | (integrations within scans are auto averaged |
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| 19 | and the whole file is read) |
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| 20 | or |
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| 21 | [advanced] a reference to an existing |
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[102] | 22 | scantable |
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| 23 | """ |
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[226] | 24 | self._vb = rcParams['verbose'] |
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[113] | 25 | self._p = None |
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[181] | 26 | from os import stat as st |
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| 27 | import stat |
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| 28 | if isinstance(filename,sdtable): |
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| 29 | sdtable.__init__(self, filename) |
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| 30 | else: |
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[226] | 31 | try: |
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| 32 | mode = st(filename)[stat.ST_MODE] |
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| 33 | except OSError: |
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| 34 | print "File not found" |
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| 35 | return |
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[181] | 36 | if stat.S_ISDIR(mode): |
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| 37 | # crude check if asap table |
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| 38 | if stat.S_ISREG(st(filename+'/table.info')[stat.ST_MODE]): |
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| 39 | sdtable.__init__(self, filename) |
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| 40 | else: |
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| 41 | print 'The given file is not a valid asap table' |
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[226] | 42 | return |
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| 43 | else: |
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| 44 | autoav = rcParams['scantable.autoaverage'] |
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| 45 | |
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[181] | 46 | from asap._asap import sdreader |
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| 47 | r = sdreader(filename) |
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| 48 | print 'Importing data...' |
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| 49 | r.read([-1]) |
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| 50 | tbl = r.getdata() |
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[226] | 51 | if autoav: |
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| 52 | from asap._asap import average |
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| 53 | tmp = tuple([tbl]) |
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| 54 | print 'Auto averaging integrations...' |
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| 55 | tbl2 = average(tmp,(),True,'none') |
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| 56 | sdtable.__init__(self,tbl2) |
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| 57 | del r,tbl |
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| 58 | else: |
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| 59 | sdtable.__init__(self,tbl) |
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[102] | 60 | |
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[256] | 61 | def save(self, name=None, format=None, overwrite=False): |
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[116] | 62 | """ |
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| 63 | Store the scantable on disk. This can be a asap file or SDFITS/MS2. |
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| 64 | Parameters: |
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[196] | 65 | name: the name of the outputfile. For format="FITS" this |
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| 66 | is the root file name (and can be empty). |
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[116] | 67 | format: an optional file format. Default is ASAP. |
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[194] | 68 | Allowed are - 'ASAP' (save as ASAP Table), |
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| 69 | 'SDFITS' (save as SDFITS file) |
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| 70 | 'FITS' (saves each row as a FITS Image) |
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[200] | 71 | 'ASCII' (saves as ascii text file) |
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[226] | 72 | 'MS2' (saves as an aips++ |
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| 73 | MeasurementSet V2) |
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[256] | 74 | overwrite: if the file should be overwritten if it exists. |
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| 75 | The default False is to return with warning |
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| 76 | without writing the output |
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[116] | 77 | Example: |
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| 78 | scan.save('myscan.asap') |
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| 79 | scan.save('myscan.sdfits','SDFITS') |
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| 80 | """ |
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[226] | 81 | if format is None: format = rcParams['scantable.save'] |
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[256] | 82 | suffix = '.'+format.lower() |
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| 83 | if name is None or name =="": |
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| 84 | name = 'scantable'+suffix |
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| 85 | from os import path |
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| 86 | if path.isfile(name) or path.isdir(name): |
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| 87 | if not overwrite: |
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| 88 | print "File %s already exists." % name |
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| 89 | return |
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[116] | 90 | if format == 'ASAP': |
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| 91 | self._save(name) |
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| 92 | else: |
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| 93 | from asap._asap import sdwriter as _sw |
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[194] | 94 | w = _sw(format) |
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| 95 | w.write(self, name) |
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[116] | 96 | return |
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| 97 | |
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[102] | 98 | def copy(self): |
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| 99 | """ |
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| 100 | Return a copy of this scantable. |
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| 101 | Parameters: |
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[113] | 102 | none |
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[102] | 103 | Example: |
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| 104 | copiedscan = scan.copy() |
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| 105 | """ |
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[113] | 106 | sd = scantable(sdtable._copy(self)) |
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| 107 | return sd |
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| 108 | |
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[102] | 109 | def get_scan(self, scanid=None): |
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| 110 | """ |
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| 111 | Return a specific scan (by scanno) or collection of scans (by |
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| 112 | source name) in a new scantable. |
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| 113 | Parameters: |
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| 114 | scanid: a scanno or a source name |
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| 115 | Example: |
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[113] | 116 | scan.get_scan('323p459') |
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[102] | 117 | # gets all scans containing the source '323p459' |
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| 118 | """ |
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| 119 | if scanid is None: |
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| 120 | print "Please specify a scan no or name to retrieve from the scantable" |
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| 121 | try: |
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| 122 | if type(scanid) is str: |
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[113] | 123 | s = sdtable._getsource(self,scanid) |
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[102] | 124 | return scantable(s) |
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| 125 | elif type(scanid) is int: |
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[113] | 126 | s = sdtable._getscan(self,scanid) |
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[102] | 127 | return scantable(s) |
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| 128 | except RuntimeError: |
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| 129 | print "Couldn't find any match." |
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| 130 | |
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| 131 | def __str__(self): |
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[256] | 132 | return sdtable._summary(self) |
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[102] | 133 | |
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| 134 | def summary(self,filename=None): |
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| 135 | """ |
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| 136 | Print a summary of the contents of this scantable. |
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| 137 | Parameters: |
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| 138 | filename: the name of a file to write the putput to |
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| 139 | Default - no file output |
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| 140 | """ |
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[256] | 141 | info = sdtable._summary(self) |
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[102] | 142 | if filename is not None: |
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[256] | 143 | if filename is "": |
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| 144 | filename = 'scantable_summary.txt' |
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[102] | 145 | data = open(filename, 'w') |
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| 146 | data.write(info) |
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| 147 | data.close() |
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| 148 | print info |
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| 149 | |
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[256] | 150 | def set_cursor(self, thebeam=0,theif=0,thepol=0): |
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[102] | 151 | """ |
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| 152 | Set the spectrum for individual operations. |
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| 153 | Parameters: |
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| 154 | thebeam,theif,thepol: a number |
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| 155 | Example: |
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[256] | 156 | scan.set_cursor(0,0,1) |
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[135] | 157 | pol1sig = scan.stats(all=False) # returns std dev for beam=0 |
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[181] | 158 | # if=0, pol=1 |
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[102] | 159 | """ |
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| 160 | self.setbeam(thebeam) |
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| 161 | self.setpol(thepol) |
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| 162 | self.setif(theif) |
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| 163 | return |
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| 164 | |
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[256] | 165 | def get_cursor(self): |
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[113] | 166 | """ |
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| 167 | Return/print a the current 'cursor' into the Beam/IF/Pol cube. |
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| 168 | Parameters: |
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| 169 | none |
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| 170 | Returns: |
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| 171 | a list of values (currentBeam,currentIF,currentPol) |
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| 172 | Example: |
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| 173 | none |
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| 174 | """ |
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[102] | 175 | i = self.getbeam() |
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| 176 | j = self.getif() |
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| 177 | k = self.getpol() |
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[113] | 178 | if self._vb: |
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[181] | 179 | print "--------------------------------------------------" |
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[256] | 180 | print " Cursor position" |
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[181] | 181 | print "--------------------------------------------------" |
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[226] | 182 | out = 'Beam=%d IF=%d Pol=%d ' % (i,j,k) |
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[113] | 183 | print out |
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[102] | 184 | return i,j,k |
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| 185 | |
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[226] | 186 | def stats(self, stat='stddev', mask=None, all=None): |
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[102] | 187 | """ |
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[135] | 188 | Determine the specified statistic of the current beam/if/pol |
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[102] | 189 | Takes a 'mask' as an optional parameter to specify which |
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| 190 | channels should be excluded. |
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| 191 | Parameters: |
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[135] | 192 | stat: 'min', 'max', 'sumsq', 'sum', 'mean' |
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| 193 | 'var', 'stddev', 'avdev', 'rms', 'median' |
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| 194 | mask: an optional mask specifying where the statistic |
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[102] | 195 | should be determined. |
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[241] | 196 | all: if true show all (default or .asaprc) rather |
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| 197 | that the cursor selected spectrum of Beam/IF/Pol |
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[102] | 198 | |
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| 199 | Example: |
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[113] | 200 | scan.set_unit('channel') |
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[102] | 201 | msk = scan.create_mask([100,200],[500,600]) |
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[135] | 202 | scan.stats(stat='mean', mask=m) |
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[102] | 203 | """ |
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[226] | 204 | if all is None: all = rcParams['scantable.allaxes'] |
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[135] | 205 | from asap._asap import stats as _stats |
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[256] | 206 | from numarray import array,zeros,Float |
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[102] | 207 | if mask == None: |
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| 208 | mask = ones(self.nchan()) |
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[256] | 209 | axes = ['Beam','IF','Pol','Time'] |
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| 210 | |
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[102] | 211 | if all: |
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[256] | 212 | n = self.nbeam()*self.nif()*self.npol()*self.nrow() |
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| 213 | shp = [self.nbeam(),self.nif(),self.npol(),self.nrow()] |
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| 214 | arr = array(zeros(n),shape=shp,type=Float) |
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| 215 | |
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| 216 | for i in range(self.nbeam()): |
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| 217 | self.setbeam(i) |
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| 218 | for j in range(self.nif()): |
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| 219 | self.setif(j) |
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| 220 | for k in range(self.npol()): |
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| 221 | self.setpol(k) |
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| 222 | arr[i,j,k,:] = _stats(self,mask,stat,-1) |
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| 223 | retval = {'axes': axes, 'data': arr, 'cursor':None} |
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| 224 | tm = [self._gettime(val) for val in range(self.nrow())] |
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[181] | 225 | if self._vb: |
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[256] | 226 | self._print_values(retval,stat,tm) |
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| 227 | return retval |
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[102] | 228 | |
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| 229 | else: |
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[256] | 230 | i,j,k = (self.getbeam(),self.getif(),self.getpol()) |
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[241] | 231 | statval = _stats(self,mask,stat,-1) |
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[181] | 232 | out = '' |
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| 233 | for l in range(self.nrow()): |
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| 234 | tm = self._gettime(l) |
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| 235 | out += 'Time[%s]:\n' % (tm) |
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| 236 | if self.nbeam() > 1: out += ' Beam[%d] ' % (i) |
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| 237 | if self.nif() > 1: out += ' IF[%d] ' % (j) |
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| 238 | if self.npol() > 1: out += ' Pol[%d] ' % (k) |
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| 239 | out += '= %3.3f\n' % (statval[l]) |
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| 240 | out += "--------------------------------------------------\n" |
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[226] | 241 | |
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[181] | 242 | if self._vb: |
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| 243 | print "--------------------------------------------------" |
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| 244 | print " ",stat |
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| 245 | print "--------------------------------------------------" |
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| 246 | print out |
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[256] | 247 | retval = {'axes': axes, 'data': array(statval), 'cursor':(i,j,k)} |
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| 248 | return retval |
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[102] | 249 | |
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[226] | 250 | def stddev(self,mask=None, all=None): |
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[135] | 251 | """ |
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| 252 | Determine the standard deviation of the current beam/if/pol |
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| 253 | Takes a 'mask' as an optional parameter to specify which |
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| 254 | channels should be excluded. |
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| 255 | Parameters: |
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| 256 | mask: an optional mask specifying where the standard |
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| 257 | deviation should be determined. |
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[226] | 258 | all: optional flag to show all or a cursor selected |
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| 259 | spectrum of Beam/IF/Pol. Default is all or taken |
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| 260 | from .asaprc |
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[135] | 261 | |
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| 262 | Example: |
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| 263 | scan.set_unit('channel') |
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| 264 | msk = scan.create_mask([100,200],[500,600]) |
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| 265 | scan.stddev(mask=m) |
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| 266 | """ |
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[226] | 267 | if all is None: all = rcParams['scantable.allaxes'] |
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[135] | 268 | return self.stats(stat='stddev',mask=mask, all=all); |
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| 269 | |
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[226] | 270 | def get_tsys(self, all=None): |
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[113] | 271 | """ |
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| 272 | Return the System temperatures. |
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| 273 | Parameters: |
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| 274 | all: optional parameter to get the Tsys values for all |
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| 275 | Beams/IFs/Pols (default) or just the one selected |
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[256] | 276 | with scantable.set_cursor() |
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[113] | 277 | [True or False] |
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| 278 | Returns: |
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| 279 | a list of Tsys values. |
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| 280 | """ |
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[226] | 281 | if all is None: all = rcParams['scantable.allaxes'] |
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[256] | 282 | from numarray import array,zeros,Float |
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| 283 | axes = ['Beam','IF','Pol','Time'] |
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| 284 | |
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[102] | 285 | if all: |
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[256] | 286 | n = self.nbeam()*self.nif()*self.npol()*self.nrow() |
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| 287 | shp = [self.nbeam(),self.nif(),self.npol(),self.nrow()] |
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| 288 | arr = array(zeros(n),shape=shp,type=Float) |
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| 289 | |
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| 290 | for i in range(self.nbeam()): |
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| 291 | self.setbeam(i) |
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| 292 | for j in range(self.nif()): |
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| 293 | self.setif(j) |
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| 294 | for k in range(self.npol()): |
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| 295 | self.setpol(k) |
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| 296 | arr[i,j,k,:] = self._gettsys() |
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| 297 | retval = {'axes': axes, 'data': arr, 'cursor':None} |
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| 298 | tm = [self._gettime(val) for val in range(self.nrow())] |
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[181] | 299 | if self._vb: |
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[256] | 300 | self._print_values(retval,'Tsys',tm) |
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| 301 | return retval |
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| 302 | |
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[102] | 303 | else: |
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[256] | 304 | i,j,k = (self.getbeam(),self.getif(),self.getpol()) |
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| 305 | statval = self._gettsys() |
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[181] | 306 | out = '' |
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| 307 | for l in range(self.nrow()): |
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| 308 | tm = self._gettime(l) |
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| 309 | out += 'Time[%s]:\n' % (tm) |
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| 310 | if self.nbeam() > 1: out += ' Beam[%d] ' % (i) |
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| 311 | if self.nif() > 1: out += ' IF[%d] ' % (j) |
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| 312 | if self.npol() > 1: out += ' Pol[%d] ' % (k) |
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[256] | 313 | out += '= %3.3f\n' % (statval[l]) |
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| 314 | out += "--------------------------------------------------\n" |
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| 315 | |
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[181] | 316 | if self._vb: |
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| 317 | print "--------------------------------------------------" |
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[256] | 318 | print " TSys" |
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[181] | 319 | print "--------------------------------------------------" |
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| 320 | print out |
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[256] | 321 | retval = {'axes': axes, 'data': array(statval), 'cursor':(i,j,k)} |
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| 322 | return retval |
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[113] | 323 | |
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| 324 | def get_time(self): |
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| 325 | """ |
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| 326 | Get a list of time stamps for the observations. |
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[181] | 327 | Return a string for each integration in the scantable. |
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[113] | 328 | Parameters: |
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| 329 | none |
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| 330 | Example: |
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| 331 | none |
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| 332 | """ |
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| 333 | out = [] |
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| 334 | for i in range(self.nrow()): |
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| 335 | out.append(self._gettime(i)) |
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| 336 | return out |
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[102] | 337 | |
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| 338 | def set_unit(self, unit='channel'): |
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| 339 | """ |
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| 340 | Set the unit for all following operations on this scantable |
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| 341 | Parameters: |
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| 342 | unit: optional unit, default is 'channel' |
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[113] | 343 | one of '*Hz','km/s','channel', '' |
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[102] | 344 | """ |
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[113] | 345 | |
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| 346 | if unit in ['','pixel', 'channel']: |
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| 347 | unit = '' |
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| 348 | inf = list(self._getcoordinfo()) |
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| 349 | inf[0] = unit |
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| 350 | self._setcoordinfo(inf) |
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| 351 | if self._p: self.plot() |
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| 352 | |
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[276] | 353 | def set_doppler(self, doppler='RADIO'): |
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| 354 | """ |
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| 355 | Set the doppler for all following operations on this scantable. |
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| 356 | Parameters: |
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| 357 | doppler: One of 'RADIO', 'OPTICAL', 'Z', 'BETA', 'GAMMA' |
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| 358 | """ |
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| 359 | |
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| 360 | inf = list(self._getcoordinfo()) |
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| 361 | inf[2] = doppler |
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| 362 | self._setcoordinfo(inf) |
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| 363 | if self._p: self.plot() |
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| 364 | |
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[226] | 365 | def set_freqframe(self, frame=None): |
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[113] | 366 | """ |
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| 367 | Set the frame type of the Spectral Axis. |
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| 368 | Parameters: |
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| 369 | frame: an optional frame type, default 'LSRK'. |
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| 370 | Examples: |
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| 371 | scan.set_freqframe('BARY') |
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| 372 | """ |
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[226] | 373 | if not frame: frame = rcParams['scantable.freqframe'] |
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[113] | 374 | valid = ['REST','TOPO','LSRD','LSRK','BARY', \ |
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| 375 | 'GEO','GALACTO','LGROUP','CMB'] |
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| 376 | if frame in valid: |
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| 377 | inf = list(self._getcoordinfo()) |
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| 378 | inf[1] = frame |
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| 379 | self._setcoordinfo(inf) |
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[102] | 380 | else: |
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[113] | 381 | print "Please specify a valid freq type. Valid types are:\n",valid |
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| 382 | |
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| 383 | def get_unit(self): |
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| 384 | """ |
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| 385 | Get the default unit set in this scantable |
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| 386 | Parameters: |
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| 387 | Returns: |
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| 388 | A unit string |
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| 389 | """ |
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| 390 | inf = self._getcoordinfo() |
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| 391 | unit = inf[0] |
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| 392 | if unit == '': unit = 'channel' |
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| 393 | return unit |
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[102] | 394 | |
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[158] | 395 | def get_abcissa(self, rowno=0): |
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[102] | 396 | """ |
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[158] | 397 | Get the abcissa in the current coordinate setup for the currently |
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[113] | 398 | selected Beam/IF/Pol |
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| 399 | Parameters: |
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[226] | 400 | rowno: an optional row number in the scantable. Default is the |
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| 401 | first row, i.e. rowno=0 |
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[113] | 402 | Returns: |
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[158] | 403 | The abcissa values and it's format string. |
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[113] | 404 | """ |
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[256] | 405 | abc = self._getabcissa(rowno) |
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| 406 | lbl = self._getabcissalabel(rowno) |
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[158] | 407 | return abc, lbl |
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[113] | 408 | |
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| 409 | def create_mask(self, *args, **kwargs): |
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| 410 | """ |
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[102] | 411 | Compute and return a mask based on [min,max] windows. |
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[189] | 412 | The specified windows are to be INCLUDED, when the mask is |
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[113] | 413 | applied. |
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[102] | 414 | Parameters: |
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| 415 | [min,max],[min2,max2],... |
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| 416 | Pairs of start/end points specifying the regions |
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| 417 | to be masked |
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[189] | 418 | invert: optional argument. If specified as True, |
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| 419 | return an inverted mask, i.e. the regions |
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| 420 | specified are EXCLUDED |
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[102] | 421 | Example: |
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[113] | 422 | scan.set_unit('channel') |
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| 423 | |
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| 424 | a) |
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[102] | 425 | msk = scan.set_mask([400,500],[800,900]) |
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[189] | 426 | # masks everything outside 400 and 500 |
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[113] | 427 | # and 800 and 900 in the unit 'channel' |
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| 428 | |
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| 429 | b) |
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| 430 | msk = scan.set_mask([400,500],[800,900], invert=True) |
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[189] | 431 | # masks the regions between 400 and 500 |
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[113] | 432 | # and 800 and 900 in the unit 'channel' |
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| 433 | |
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[102] | 434 | """ |
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[113] | 435 | u = self._getcoordinfo()[0] |
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| 436 | if self._vb: |
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| 437 | if u == "": u = "channel" |
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| 438 | print "The current mask window unit is", u |
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[102] | 439 | n = self.nchan() |
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[256] | 440 | data = self._getabcissa() |
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[189] | 441 | msk = zeros(n) |
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[102] | 442 | for window in args: |
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| 443 | if (len(window) != 2 or window[0] > window[1] ): |
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| 444 | print "A window needs to be defined as [min,max]" |
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| 445 | return |
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| 446 | for i in range(n): |
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[113] | 447 | if data[i] >= window[0] and data[i] < window[1]: |
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[189] | 448 | msk[i] = 1 |
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[113] | 449 | if kwargs.has_key('invert'): |
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| 450 | if kwargs.get('invert'): |
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| 451 | from numarray import logical_not |
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| 452 | msk = logical_not(msk) |
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[102] | 453 | return msk |
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[113] | 454 | |
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| 455 | def set_restfreqs(self, freqs, unit='Hz'): |
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[102] | 456 | """ |
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| 457 | Set the restfrequency(s) for this scantable. |
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| 458 | Parameters: |
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| 459 | freqs: one or more frequencies |
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| 460 | unit: optional 'unit', default 'Hz' |
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| 461 | Example: |
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[113] | 462 | scan.set_restfreqs([1000000000.0]) |
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[102] | 463 | """ |
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[113] | 464 | if type(freqs) is float or int: |
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| 465 | freqs = (freqs) |
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| 466 | sdtable._setrestfreqs(self,freqs, unit) |
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[102] | 467 | return |
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[256] | 468 | def get_restfreqs(self): |
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| 469 | """ |
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| 470 | Get the restfrequency(s) stored in this scantable. |
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| 471 | The return value(s) are always of unit 'Hz' |
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| 472 | Parameters: |
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| 473 | none |
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| 474 | Returns: |
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| 475 | a list of doubles |
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| 476 | """ |
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| 477 | return list(self._getrestfreqs()) |
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[102] | 478 | |
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| 479 | def flag_spectrum(self, thebeam, theif, thepol): |
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| 480 | """ |
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| 481 | This flags a selected spectrum in the scan 'for good'. |
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| 482 | USE WITH CARE - not reversible. |
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| 483 | Use masks for non-permanent exclusion of channels. |
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| 484 | Parameters: |
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| 485 | thebeam,theif,thepol: all have to be explicitly |
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| 486 | specified |
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| 487 | Example: |
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| 488 | scan.flag_spectrum(0,0,1) |
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| 489 | flags the spectrum for Beam=0, IF=0, Pol=1 |
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| 490 | """ |
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| 491 | if (thebeam < self.nbeam() and theif < self.nif() and thepol < self.npol()): |
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| 492 | stable.setbeam(thebeam) |
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| 493 | stable.setif(theif) |
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| 494 | stable.setpol(thepol) |
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| 495 | stable._flag(self) |
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| 496 | else: |
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| 497 | print "Please specify a valid (Beam/IF/Pol)" |
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| 498 | return |
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[113] | 499 | |
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| 500 | def plot(self, what='spectrum',col='Pol', panel=None): |
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| 501 | """ |
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| 502 | Plot the spectra contained in the scan. Alternatively you can also |
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| 503 | Plot Tsys vs Time |
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| 504 | Parameters: |
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| 505 | what: a choice of 'spectrum' (default) or 'tsys' |
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[135] | 506 | col: which out of Beams/IFs/Pols should be colour stacked |
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[113] | 507 | panel: set up multiple panels, currently not working. |
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| 508 | """ |
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| 509 | validcol = {'Beam':self.nbeam(),'IF':self.nif(),'Pol':self.npol()} |
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[124] | 510 | |
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[113] | 511 | validyax = ['spectrum','tsys'] |
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[189] | 512 | from asap.asaplot import ASAPlot |
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[113] | 513 | if not self._p: |
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| 514 | self._p = ASAPlot() |
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[189] | 515 | #print "Plotting not enabled" |
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| 516 | #return |
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| 517 | if self._p.is_dead: |
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| 518 | del self._p |
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| 519 | self._p = ASAPlot() |
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[113] | 520 | npan = 1 |
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| 521 | x = None |
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| 522 | if what == 'tsys': |
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| 523 | n = self.nrow() |
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| 524 | if n < 2: |
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| 525 | print "Only one integration. Can't plot." |
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| 526 | return |
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[124] | 527 | self._p.hold() |
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| 528 | self._p.clear() |
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[113] | 529 | if panel == 'Time': |
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| 530 | npan = self.nrow() |
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[124] | 531 | self._p.set_panels(rows=npan) |
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[113] | 532 | xlab,ylab,tlab = None,None,None |
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[226] | 533 | self._vb = False |
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[256] | 534 | sel = self.get_cursor() |
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[113] | 535 | for i in range(npan): |
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[226] | 536 | if npan > 1: |
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| 537 | self._p.subplot(i) |
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[113] | 538 | for j in range(validcol[col]): |
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| 539 | x = None |
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| 540 | y = None |
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| 541 | m = None |
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| 542 | tlab = self._getsourcename(i) |
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[124] | 543 | import re |
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| 544 | tlab = re.sub('_S','',tlab) |
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[113] | 545 | if col == 'Beam': |
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| 546 | self.setbeam(j) |
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| 547 | elif col == 'IF': |
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| 548 | self.setif(j) |
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| 549 | elif col == 'Pol': |
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| 550 | self.setpol(j) |
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| 551 | if what == 'tsys': |
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| 552 | x = range(self.nrow()) |
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| 553 | xlab = 'Time [pixel]' |
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| 554 | m = list(ones(len(x))) |
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| 555 | y = [] |
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| 556 | ylab = r'$T_{sys}$' |
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| 557 | for k in range(len(x)): |
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| 558 | y.append(self._gettsys(k)) |
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| 559 | else: |
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[158] | 560 | x,xlab = self.get_abcissa(i) |
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[256] | 561 | y = self._getspectrum(i) |
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[113] | 562 | ylab = r'Flux' |
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[256] | 563 | m = self._getmask(i) |
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[113] | 564 | llab = col+' '+str(j) |
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| 565 | self._p.set_line(label=llab) |
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| 566 | self._p.plot(x,y,m) |
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[124] | 567 | self._p.set_axes('xlabel',xlab) |
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| 568 | self._p.set_axes('ylabel',ylab) |
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| 569 | self._p.set_axes('title',tlab) |
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[113] | 570 | self._p.release() |
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[256] | 571 | self.set_cursor(sel[0],sel[1],sel[2]) |
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[226] | 572 | self._vb = rcParams['verbose'] |
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[113] | 573 | return |
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[256] | 574 | |
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| 575 | print out |
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| 576 | |
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| 577 | def _print_values(self, dat, label='', timestamps=[]): |
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| 578 | d = dat['data'] |
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| 579 | a = dat['axes'] |
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| 580 | shp = d.getshape() |
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| 581 | out = '' |
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| 582 | for i in range(shp[3]): |
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| 583 | out += '%s [%s]:\n' % (a[3],timestamps[i]) |
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| 584 | t = d[:,:,:,i] |
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| 585 | for j in range(shp[0]): |
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| 586 | if shp[0] > 1: out += ' %s[%d] ' % (a[0],j) |
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| 587 | for k in range(shp[1]): |
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| 588 | if shp[1] > 1: out += ' %s[%d] ' % (a[1],k) |
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| 589 | for l in range(shp[2]): |
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| 590 | if shp[2] > 1: out += ' %s[%d] ' % (a[2],l) |
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| 591 | out += '= %3.3f\n' % (t[j,k,l]) |
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| 592 | out += "--------------------------------------------------\n" |
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| 593 | print "--------------------------------------------------" |
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| 594 | print " ", label |
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| 595 | print "--------------------------------------------------" |
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| 596 | print out |
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