| 1 | from asap import scantable |
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| 2 | from pylab import * |
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| 3 | from numpy import array, ma, logical_not |
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| 4 | from numpy.fft import fft, ifft |
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| 5 | |
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| 6 | class lagplotter(object): |
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| 7 | def __init__(self, stable): |
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| 8 | if not isinstance(stable, scantable): |
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| 9 | raise TypeError("This works only on scantables") |
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| 10 | self._scan = stable |
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| 11 | self.figure = None |
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| 12 | self.dataaxes = None |
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| 13 | self.fftaxes = None |
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| 14 | self.resultaxes = None |
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| 15 | self.flags = [] |
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| 16 | |
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| 17 | def _init_plot(self): |
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| 18 | if not self.figure: |
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| 19 | self.figure = figure() |
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| 20 | self.dataaxes = self.figure.add_subplot(3,1,1) |
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| 21 | self.fftaxes = self.figure.add_subplot(3,1,2) |
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| 22 | self.resultaxes = self.figure.add_subplot(3,1,3) |
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| 23 | else: |
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| 24 | self.dataaxes.cla() |
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| 25 | self.fftaxes.cla() |
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| 26 | self.resultaxes.cla() |
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| 27 | |
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| 28 | |
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| 29 | def flag(self): |
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| 30 | self._init_plot() |
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| 31 | for i in xrange(len(self._scan)): |
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| 32 | self.dataaxes.cla() |
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| 33 | self.fftaxes.cla() |
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| 34 | self.resultaxes.cla() |
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| 35 | x = array(self._scan.get_abcissa(i)[0]) |
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| 36 | y = array(self._scan.get_spectrum(i)) |
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| 37 | msk = self._scan.get_mask(i) |
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| 38 | marr = ma.MaskedArray(y, logical_not(msk), fill_value=0.0) |
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| 39 | self.dataaxes.plot(x, marr) |
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| 40 | nfft = len(marr)/2+1 |
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| 41 | yfft = fft(marr.filled()) |
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| 42 | self.fftaxes.semilogy(abs(yfft)[0:nfft]) |
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| 43 | self.figure.show() |
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| 44 | raw_input("Press any key to continue...") |
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| 45 | print "Now select a start and end point by clicking on the middle plot" |
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| 46 | print |
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| 47 | flagstart = int(ginput(show_clicks=False)[0][0]+0.5) |
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| 48 | flagend = int(ginput(show_clicks=False)[0][0]+0.5) |
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| 49 | xfft = range(len(yfft)) |
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| 50 | self.fftaxes.axvspan(flagstart, flagend, alpha=0.3) |
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| 51 | yfft[flagstart:flagend] = 0+0j |
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| 52 | yfft[-flagend:-flagstart] = 0+0j |
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| 53 | yi = ifft(yfft) |
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| 54 | self.resultaxes.plot(x, yi) |
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| 55 | self.figure.show() |
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| 56 | inp = raw_input("Commit flags (c), keep (k) or ignore(i)? ").lower() |
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| 57 | if inp.startswith("c") |
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| 58 | self.flags.append([flagstart, flagend]) |
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| 59 | self._scan.set_spectrum(yi.real, i) |
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| 60 | elif inp.startswith("k"): |
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| 61 | self.flags.append([flagstart, flagend]) |
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| 62 | else: |
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| 63 | del self.fftaxes.patches[-1] |
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| 64 | cont = raw_input("Continue (c) or quit (q)? ") |
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| 65 | if not cont == "c": |
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| 66 | return self.flags |
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| 67 | return self.flags |
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