| 1 | import os |
|---|
| 2 | import matplotlib, numpy |
|---|
| 3 | from matplotlib.patches import Rectangle |
|---|
| 4 | from asap.parameters import rcParams |
|---|
| 5 | from asap.logging import asaplog, asaplog_post_dec |
|---|
| 6 | from asap import scantable |
|---|
| 7 | from asap._asap import stmath |
|---|
| 8 | |
|---|
| 9 | ########################################### |
|---|
| 10 | ## Add CASA custom Flag toolbar ## |
|---|
| 11 | ########################################### |
|---|
| 12 | class CustomFlagToolbarCommon: |
|---|
| 13 | def __init__(self,parent): |
|---|
| 14 | self.plotter=parent |
|---|
| 15 | #self.figmgr=self.plotter._plotter.figmgr |
|---|
| 16 | self._selregions = {} |
|---|
| 17 | self._selpanels = [] |
|---|
| 18 | self._polygons = [] |
|---|
| 19 | self._thisregion = None |
|---|
| 20 | self.xdataold=None |
|---|
| 21 | |
|---|
| 22 | ### select the nearest spectrum in pick radius |
|---|
| 23 | ### and display spectral value on the toolbar. |
|---|
| 24 | def _select_spectrum(self,event): |
|---|
| 25 | # Do not fire event when in zooming/panning mode |
|---|
| 26 | mode = self.figmgr.toolbar.mode |
|---|
| 27 | if not mode == '': |
|---|
| 28 | return |
|---|
| 29 | # When selected point is out of panels |
|---|
| 30 | if event.inaxes == None: |
|---|
| 31 | return |
|---|
| 32 | # If not left button |
|---|
| 33 | if event.button != 1: |
|---|
| 34 | return |
|---|
| 35 | |
|---|
| 36 | xclick=event.xdata |
|---|
| 37 | yclick=event.ydata |
|---|
| 38 | dist2=1000. |
|---|
| 39 | pickline=None |
|---|
| 40 | # If the pannel has picable objects |
|---|
| 41 | pflag=False |
|---|
| 42 | for lin in event.inaxes.lines: |
|---|
| 43 | if not lin.pickable(): |
|---|
| 44 | continue |
|---|
| 45 | pflag=True |
|---|
| 46 | flag,pind = lin.contains(event) |
|---|
| 47 | if not flag: |
|---|
| 48 | continue |
|---|
| 49 | # Get nearest point |
|---|
| 50 | inds = pind['ind'] |
|---|
| 51 | xlin = lin.get_xdata() |
|---|
| 52 | ylin = lin.get_ydata() |
|---|
| 53 | for i in inds: |
|---|
| 54 | d2=(xlin[i]-xclick)**2+(ylin[i]-yclick)**2 |
|---|
| 55 | if dist2 >= d2: |
|---|
| 56 | dist2 = d2 |
|---|
| 57 | pickline = lin |
|---|
| 58 | # No pickcable line in the pannel |
|---|
| 59 | if not pflag: |
|---|
| 60 | return |
|---|
| 61 | # Pickable but too far from mouse position |
|---|
| 62 | elif pickline is None: |
|---|
| 63 | picked='No line selected.' |
|---|
| 64 | self.figmgr.toolbar.set_message(picked) |
|---|
| 65 | return |
|---|
| 66 | del pind, inds, xlin, ylin |
|---|
| 67 | # Spectra are Picked |
|---|
| 68 | theplot = self.plotter._plotter |
|---|
| 69 | thetoolbar = self.figmgr.toolbar |
|---|
| 70 | thecanvas = self.figmgr.canvas |
|---|
| 71 | # Disconnect the default motion notify event |
|---|
| 72 | # Notice! the other buttons are also diabled!!! |
|---|
| 73 | thecanvas.mpl_disconnect(thetoolbar._idDrag) |
|---|
| 74 | # Get picked spectrum |
|---|
| 75 | xdata = pickline.get_xdata() |
|---|
| 76 | ydata = pickline.get_ydata() |
|---|
| 77 | titl=pickline.get_label() |
|---|
| 78 | titp=event.inaxes.title.get_text() |
|---|
| 79 | panel0=event.inaxes |
|---|
| 80 | picked="Selected: '"+titl+"' in panel '"+titp+"'." |
|---|
| 81 | thetoolbar.set_message(picked) |
|---|
| 82 | # Generate a navigation window |
|---|
| 83 | #naviwin=Navigationwindow(titp,titl) |
|---|
| 84 | #------------------------------------------------------# |
|---|
| 85 | # Show spectrum data at mouse position |
|---|
| 86 | def spec_data(event): |
|---|
| 87 | # Getting spectrum data of neiboring point |
|---|
| 88 | xclick=event.xdata |
|---|
| 89 | if event.inaxes != panel0: |
|---|
| 90 | return |
|---|
| 91 | ipoint=len(xdata)-1 |
|---|
| 92 | for i in range(len(xdata)-1): |
|---|
| 93 | xl=xclick-xdata[i] |
|---|
| 94 | xr=xclick-xdata[i+1] |
|---|
| 95 | if xl*xr <= 0.: |
|---|
| 96 | ipoint = i |
|---|
| 97 | break |
|---|
| 98 | # Output spectral value on the navigation window |
|---|
| 99 | posi='[ %s, %s ]: x = %.2f value = %.2f'\ |
|---|
| 100 | %(titl,titp,xdata[ipoint],ydata[ipoint]) |
|---|
| 101 | #naviwin.posi.set(posi) |
|---|
| 102 | thetoolbar.set_message(posi) |
|---|
| 103 | #------------------------------------------------------# |
|---|
| 104 | # Disconnect from mouse events |
|---|
| 105 | def discon(event): |
|---|
| 106 | #naviwin.window.destroy() |
|---|
| 107 | theplot.register('motion_notify',None) |
|---|
| 108 | # Re-activate the default motion_notify_event |
|---|
| 109 | thetoolbar._idDrag=thecanvas.mpl_connect('motion_notify_event', |
|---|
| 110 | thetoolbar.mouse_move) |
|---|
| 111 | theplot.register('button_release',None) |
|---|
| 112 | return |
|---|
| 113 | #------------------------------------------------------# |
|---|
| 114 | # Show data value along with mouse movement |
|---|
| 115 | theplot.register('motion_notify',spec_data) |
|---|
| 116 | # Finish events when mouse button is released |
|---|
| 117 | theplot.register('button_release',discon) |
|---|
| 118 | |
|---|
| 119 | |
|---|
| 120 | ### Calculate statistics of the selected area. |
|---|
| 121 | @asaplog_post_dec |
|---|
| 122 | def _statistics(self): |
|---|
| 123 | if not self._any_selection(): |
|---|
| 124 | msg = "No selection to be calculated" |
|---|
| 125 | asaplog.push(msg) |
|---|
| 126 | asaplog.post('WARN') |
|---|
| 127 | return |
|---|
| 128 | print "Calculate statistics of selected region and spectra" |
|---|
| 129 | self._selected_stats(rows=self._selpanels,regions=self._selregions) |
|---|
| 130 | print "Statistics: " |
|---|
| 131 | print "- rows: ",self._selpanels |
|---|
| 132 | print "- regions:\n ",self._selregions |
|---|
| 133 | self._clearup_selections() |
|---|
| 134 | |
|---|
| 135 | @asaplog_post_dec |
|---|
| 136 | def _selected_stats(self,rows=None,regions=None): |
|---|
| 137 | scan = self.plotter._data |
|---|
| 138 | if not scan: |
|---|
| 139 | asaplog.post() |
|---|
| 140 | asaplog.push("Invalid scantable") |
|---|
| 141 | asaplog.post("ERROR") |
|---|
| 142 | mathobj = stmath( rcParams['insitu'] ) |
|---|
| 143 | statval={} |
|---|
| 144 | statstr = ['max', 'min', 'mean', 'median', 'sum', 'stddev', 'rms'] |
|---|
| 145 | if isinstance(rows,list) and len(rows) > 0: |
|---|
| 146 | for irow in rows: |
|---|
| 147 | for stat in statstr: |
|---|
| 148 | #statval[stat] = scan.stats(stat=stat,row=irow)[0] |
|---|
| 149 | statval[stat] = mathobj._statsrow(scan,[],stat,irow)[0] |
|---|
| 150 | self._print_stats(scan,irow,statval,statstr=statstr) |
|---|
| 151 | del irow |
|---|
| 152 | if isinstance(regions,dict) and len(regions) > 0: |
|---|
| 153 | for srow, masklist in regions.iteritems(): |
|---|
| 154 | if not isinstance(masklist,list) or len(masklist) ==0: |
|---|
| 155 | msg = "Ignoring invalid region selection for row = "+srow |
|---|
| 156 | asaplog.post() |
|---|
| 157 | asaplog.push(msg) |
|---|
| 158 | asaplog.post("WARN") |
|---|
| 159 | continue |
|---|
| 160 | irow = int(srow) |
|---|
| 161 | mask = scan.create_mask(masklist,invert=False,row=irow) |
|---|
| 162 | for stat in statstr: |
|---|
| 163 | #statval[stat] = scan.stats(stat=stat,row=irow,mask = mask)[0] |
|---|
| 164 | statval[stat] = mathobj._statsrow(scan,mask,stat,irow)[0] |
|---|
| 165 | self._print_stats(scan,irow,statval,statstr=statstr,mask=masklist) |
|---|
| 166 | del irow, mask |
|---|
| 167 | del srow, masklist |
|---|
| 168 | del scan, statval, mathobj |
|---|
| 169 | |
|---|
| 170 | @asaplog_post_dec |
|---|
| 171 | def _print_stats(self,scan,row,stats,statstr=None,mask=None): |
|---|
| 172 | if not isinstance(scan, scantable): |
|---|
| 173 | asaplog.post() |
|---|
| 174 | asaplog.push("Invalid scantable") |
|---|
| 175 | asaplog.post("ERROR") |
|---|
| 176 | if row < 0 or row > scan.nrow(): |
|---|
| 177 | asaplog.post() |
|---|
| 178 | asaplog.push("Invalid row number") |
|---|
| 179 | asaplog.post("ERROR") |
|---|
| 180 | if not isinstance(stats,dict) or len(stats) == 0: |
|---|
| 181 | asaplog.post() |
|---|
| 182 | asaplog.push("Invalid statistic value") |
|---|
| 183 | asaplog.post("ERROR") |
|---|
| 184 | maskstr = "All" |
|---|
| 185 | if mask: |
|---|
| 186 | maskstr = str(mask) |
|---|
| 187 | ssep = "-"*70+"\n" |
|---|
| 188 | sout = ssep |
|---|
| 189 | sout += ("Row=%d Scan=%d IF=%d Pol=%d Time=%s mask=%s" % \ |
|---|
| 190 | (row, scan.getscan(row), scan.getif(row), scan.getpol(row), scan.get_time(row),maskstr)) |
|---|
| 191 | sout += "\n" |
|---|
| 192 | statvals = [] |
|---|
| 193 | if not len(statstr): |
|---|
| 194 | statstr = stats.keys() |
|---|
| 195 | for key in statstr: |
|---|
| 196 | sout += key.ljust(10) |
|---|
| 197 | statvals.append(stats.pop(key)) |
|---|
| 198 | sout += "\n" |
|---|
| 199 | sout += ("%f "*len(statstr) % tuple(statvals)) |
|---|
| 200 | sout += "\n"+ssep |
|---|
| 201 | asaplog.push(sout) |
|---|
| 202 | del sout, ssep, maskstr, statvals, key, scan, row, stats, statstr, mask |
|---|
| 203 | |
|---|
| 204 | ### Notation |
|---|
| 205 | def _mod_note(self,event): |
|---|
| 206 | # Do not fire event when in zooming/panning mode |
|---|
| 207 | if not self.figmgr.toolbar.mode == '': |
|---|
| 208 | return |
|---|
| 209 | if event.button ==1: |
|---|
| 210 | self.notewin.load_textwindow(event) |
|---|
| 211 | elif event.button == 3 and self._note_picked(event): |
|---|
| 212 | self.notewin.load_modmenu(event) |
|---|
| 213 | return |
|---|
| 214 | |
|---|
| 215 | def _note_picked(self,event): |
|---|
| 216 | # just briefly check if any texts are picked |
|---|
| 217 | for textobj in self.canvas.figure.texts: |
|---|
| 218 | if textobj.contains(event)[0]: |
|---|
| 219 | return True |
|---|
| 220 | for ax in self.canvas.figure.axes: |
|---|
| 221 | for textobj in ax.texts: |
|---|
| 222 | if textobj.contains(event)[0]: |
|---|
| 223 | return True |
|---|
| 224 | #print "No text picked" |
|---|
| 225 | return False |
|---|
| 226 | |
|---|
| 227 | ### Region/Panel selection & oparations |
|---|
| 228 | ### add regions to selections |
|---|
| 229 | @asaplog_post_dec |
|---|
| 230 | def _add_region(self,event): |
|---|
| 231 | if not self.figmgr.toolbar.mode == '': |
|---|
| 232 | return |
|---|
| 233 | if event.button != 1 or event.inaxes == None: |
|---|
| 234 | return |
|---|
| 235 | # this row resolution assumes row panelling |
|---|
| 236 | irow = int(self._getrownum(event.inaxes)) |
|---|
| 237 | if irow in self._selpanels: |
|---|
| 238 | msg = "The whole spectrum is already selected" |
|---|
| 239 | asaplog.post() |
|---|
| 240 | asaplog.push(msg) |
|---|
| 241 | asaplog.post('WARN') |
|---|
| 242 | return |
|---|
| 243 | print "add the region to selections" |
|---|
| 244 | self._thisregion = {'axes': event.inaxes,'xs': event.xdata, |
|---|
| 245 | 'worldx': [event.xdata,event.xdata]} |
|---|
| 246 | self.plotter._plotter.register('button_press',None) |
|---|
| 247 | self.plotter._plotter.register('motion_notify', self._xspan_draw) |
|---|
| 248 | self.plotter._plotter.register('button_press', self._xspan_end) |
|---|
| 249 | |
|---|
| 250 | def _xspan_draw(self,event): |
|---|
| 251 | if event.inaxes == self._thisregion['axes']: |
|---|
| 252 | xnow = event.xdata |
|---|
| 253 | self.xdataold = xnow |
|---|
| 254 | else: |
|---|
| 255 | xnow = self.xdataold |
|---|
| 256 | try: self.lastspan |
|---|
| 257 | except AttributeError: pass |
|---|
| 258 | else: self.lastspan.remove() |
|---|
| 259 | |
|---|
| 260 | self.lastspan = self._thisregion['axes'].axvspan(self._thisregion['xs'],xnow,facecolor='0.7') |
|---|
| 261 | #self.plotter._plotter.show(False) |
|---|
| 262 | self.plotter._plotter.canvas.draw() |
|---|
| 263 | del xnow |
|---|
| 264 | |
|---|
| 265 | def _xspan_end(self,event): |
|---|
| 266 | if not self.figmgr.toolbar.mode == '': |
|---|
| 267 | return |
|---|
| 268 | if event.button != 1: |
|---|
| 269 | return |
|---|
| 270 | |
|---|
| 271 | try: self.lastspan |
|---|
| 272 | except AttributeError: pass |
|---|
| 273 | else: |
|---|
| 274 | self.lastspan.remove() |
|---|
| 275 | del self.lastspan |
|---|
| 276 | if event.inaxes == self._thisregion['axes']: |
|---|
| 277 | xdataend = event.xdata |
|---|
| 278 | else: |
|---|
| 279 | xdataend=self.xdataold |
|---|
| 280 | |
|---|
| 281 | self._thisregion['worldx'][1] = xdataend |
|---|
| 282 | lregion = self._thisregion['worldx'] |
|---|
| 283 | pregion = self._thisregion['axes'].axvspan(lregion[0],lregion[1], |
|---|
| 284 | facecolor='0.7') |
|---|
| 285 | #self.plotter._plotter.show(False) |
|---|
| 286 | self.plotter._plotter.canvas.draw() |
|---|
| 287 | self._polygons.append(pregion) |
|---|
| 288 | srow = self._getrownum(self._thisregion['axes']) |
|---|
| 289 | irow = int(srow) |
|---|
| 290 | if not self._selregions.has_key(srow): |
|---|
| 291 | self._selregions[srow] = [] |
|---|
| 292 | self._selregions[srow].append(lregion) |
|---|
| 293 | del lregion, pregion, xdataend |
|---|
| 294 | print "selected region: ",self._thisregion['worldx'],\ |
|---|
| 295 | "(@row ",self._getrownum(self._thisregion['axes']),")" |
|---|
| 296 | |
|---|
| 297 | # release event |
|---|
| 298 | self.plotter._plotter.register('button_press',None) |
|---|
| 299 | self.plotter._plotter.register('motion_notify',None) |
|---|
| 300 | # Clear up region selection |
|---|
| 301 | self._thisregion = None |
|---|
| 302 | self.xdataold = None |
|---|
| 303 | # finally recover region selection event |
|---|
| 304 | self.plotter._plotter.register('button_press',self._add_region) |
|---|
| 305 | |
|---|
| 306 | ### add panels to selections |
|---|
| 307 | @asaplog_post_dec |
|---|
| 308 | def _add_panel(self,event): |
|---|
| 309 | if not self.figmgr.toolbar.mode == '': |
|---|
| 310 | return |
|---|
| 311 | if event.button != 1 or event.inaxes == None: |
|---|
| 312 | return |
|---|
| 313 | selax = event.inaxes |
|---|
| 314 | # this row resolution assumes row panelling |
|---|
| 315 | srow = self._getrownum(selax) |
|---|
| 316 | irow = int(srow) |
|---|
| 317 | if srow: |
|---|
| 318 | self._selpanels.append(irow) |
|---|
| 319 | shadow = Rectangle((0,0),1,1,facecolor='0.7',transform=selax.transAxes,visible=True) |
|---|
| 320 | self._polygons.append(selax.add_patch(shadow)) |
|---|
| 321 | #self.plotter._plotter.show(False) |
|---|
| 322 | self.plotter._plotter.canvas.draw() |
|---|
| 323 | print "row", irow, "added to the panel selections" |
|---|
| 324 | print "selected rows =",self._selpanels |
|---|
| 325 | ## check for region selection of the spectra and overwrite it. |
|---|
| 326 | ##!!!! currently disabled for consistency with flag tools !!!! |
|---|
| 327 | #if self._selregions.has_key(srow): |
|---|
| 328 | # self._selregions.pop(srow) |
|---|
| 329 | # msg = "The whole spectrum is selected for row="+srow+". Region selection will be overwritten." |
|---|
| 330 | # asaplog.push(msg) |
|---|
| 331 | |
|---|
| 332 | def _getrownum(self,axis): |
|---|
| 333 | ### returns the row number of selected spectrum as a string ### |
|---|
| 334 | plabel = axis.get_title() |
|---|
| 335 | if plabel.startswith("row "): |
|---|
| 336 | return plabel.strip("row ") |
|---|
| 337 | return None |
|---|
| 338 | |
|---|
| 339 | def _any_selection(self): |
|---|
| 340 | ### returns if users have selected any spectrum or region ### |
|---|
| 341 | if len(self._selpanels) or len(self._selregions): |
|---|
| 342 | return True |
|---|
| 343 | return False |
|---|
| 344 | |
|---|
| 345 | def _plot_selections(self,regions=None,panels=None): |
|---|
| 346 | ### mark panels/spectra selections in the page |
|---|
| 347 | if not self._any_selection() and not (regions or panels): |
|---|
| 348 | return |
|---|
| 349 | regions = regions or self._selregions.copy() or {} |
|---|
| 350 | panels = panels or self._selpanels or [] |
|---|
| 351 | if not isinstance(regions,dict): |
|---|
| 352 | asaplog.post() |
|---|
| 353 | asaplog.push("Invalid region specification") |
|---|
| 354 | asaplog.post('ERROR') |
|---|
| 355 | if not isinstance(panels,list): |
|---|
| 356 | asaplog.post() |
|---|
| 357 | asaplog.push("Invalid panel specification") |
|---|
| 358 | asaplog.post('ERROR') |
|---|
| 359 | strow = self._getrownum(self.plotter._plotter.subplots[0]['axes']) |
|---|
| 360 | enrow = self._getrownum(self.plotter._plotter.subplots[-1]['axes']) |
|---|
| 361 | for irow in range(int(strow),int(enrow)+1): |
|---|
| 362 | if regions.has_key(str(irow)): |
|---|
| 363 | ax = self.plotter._plotter.subplots[irow - int(strow)]['axes'] |
|---|
| 364 | mlist = regions.pop(str(irow)) |
|---|
| 365 | for i in range(len(mlist)): |
|---|
| 366 | self._polygons.append(ax.axvspan(mlist[i][0],mlist[i][1], |
|---|
| 367 | facecolor='0.7')) |
|---|
| 368 | del ax,mlist |
|---|
| 369 | if irow in panels: |
|---|
| 370 | ax = self.plotter._plotter.subplots[irow - int(strow)]['axes'] |
|---|
| 371 | shadow = Rectangle((0,0),1,1,facecolor='0.7', |
|---|
| 372 | transform=ax.transAxes,visible=True) |
|---|
| 373 | self._polygons.append(ax.add_patch(shadow)) |
|---|
| 374 | del ax,shadow |
|---|
| 375 | #self.plotter._plotter.show(False) |
|---|
| 376 | self.plotter._plotter.canvas.draw() |
|---|
| 377 | del regions,panels,strow,enrow |
|---|
| 378 | |
|---|
| 379 | def _clear_selection_plot(self): |
|---|
| 380 | ### clear up polygons which mark selected spectra and regions ### |
|---|
| 381 | if len(self._polygons) > 0: |
|---|
| 382 | for shadow in self._polygons: |
|---|
| 383 | shadow.remove() |
|---|
| 384 | self.plotter._plotter.canvas.draw() |
|---|
| 385 | self._polygons = [] |
|---|
| 386 | |
|---|
| 387 | def _clearup_selections(self): |
|---|
| 388 | # clear-up selection and polygons |
|---|
| 389 | self._selpanels = [] |
|---|
| 390 | self._selregions = {} |
|---|
| 391 | self._clear_selection_plot() |
|---|
| 392 | |
|---|
| 393 | ### clear up selections |
|---|
| 394 | def cancel_select(self): |
|---|
| 395 | self.figmgr.toolbar.set_message('selections canceled') |
|---|
| 396 | # clear-up selection and polygons |
|---|
| 397 | self._clearup_selections() |
|---|
| 398 | |
|---|
| 399 | ### flag selected spectra/regions |
|---|
| 400 | @asaplog_post_dec |
|---|
| 401 | def flag(self): |
|---|
| 402 | if not self._any_selection(): |
|---|
| 403 | msg = "No selection to be Flagged" |
|---|
| 404 | asaplog.post() |
|---|
| 405 | asaplog.push(msg) |
|---|
| 406 | asaplog.post('WARN') |
|---|
| 407 | return |
|---|
| 408 | self._flag_operation(rows=self._selpanels, |
|---|
| 409 | regions=self._selregions,unflag=False) |
|---|
| 410 | print "Flagged" |
|---|
| 411 | print "- rows: ",self._selpanels |
|---|
| 412 | print "- regions:\n ",self._selregions |
|---|
| 413 | self._clearup_selections() |
|---|
| 414 | self._plot_page(pagemode="current") |
|---|
| 415 | |
|---|
| 416 | ### unflag selected spectra/regions |
|---|
| 417 | @asaplog_post_dec |
|---|
| 418 | def unflag(self): |
|---|
| 419 | if not self._any_selection(): |
|---|
| 420 | msg = "No selection to be Flagged" |
|---|
| 421 | asaplog.push(msg) |
|---|
| 422 | asaplog.post('WARN') |
|---|
| 423 | return |
|---|
| 424 | self._flag_operation(rows=self._selpanels, |
|---|
| 425 | regions=self._selregions,unflag=True) |
|---|
| 426 | print "Unflagged:" |
|---|
| 427 | print "- rows: ",self._selpanels |
|---|
| 428 | print "- regions:\n ",self._selregions |
|---|
| 429 | self._clearup_selections() |
|---|
| 430 | self._plot_page(pagemode="current") |
|---|
| 431 | |
|---|
| 432 | ### actual flag operation |
|---|
| 433 | @asaplog_post_dec |
|---|
| 434 | def _flag_operation(self,rows=None,regions=None,unflag=False): |
|---|
| 435 | scan = self.plotter._data |
|---|
| 436 | if not scan: |
|---|
| 437 | asaplog.post() |
|---|
| 438 | asaplog.push("Invalid scantable") |
|---|
| 439 | asaplog.post("ERROR") |
|---|
| 440 | if isinstance(rows,list) and len(rows) > 0: |
|---|
| 441 | scan.flag_row(rows=rows,unflag=unflag) |
|---|
| 442 | if isinstance(regions,dict) and len(regions) > 0: |
|---|
| 443 | for srow, masklist in regions.iteritems(): |
|---|
| 444 | if not isinstance(masklist,list) or len(masklist) ==0: |
|---|
| 445 | msg = "Ignoring invalid region selection for row = "+srow |
|---|
| 446 | asaplog.post() |
|---|
| 447 | asaplog.push(msg) |
|---|
| 448 | asaplog.post("WARN") |
|---|
| 449 | continue |
|---|
| 450 | irow = int(srow) |
|---|
| 451 | mask = scan.create_mask(masklist,invert=False,row=irow) |
|---|
| 452 | scan.flag(row=irow,mask=mask,unflag=unflag) |
|---|
| 453 | del irow, mask |
|---|
| 454 | del srow, masklist |
|---|
| 455 | del scan |
|---|
| 456 | |
|---|
| 457 | ### show statistics of selected spectra/regions |
|---|
| 458 | def stat_cal(self): |
|---|
| 459 | print "Calculate statics of selected regions/panels" |
|---|
| 460 | self._statistics() |
|---|
| 461 | |
|---|
| 462 | ### Page chages |
|---|
| 463 | ### go to the previous page |
|---|
| 464 | def prev_page(self): |
|---|
| 465 | self.figmgr.toolbar.set_message('plotting the previous page') |
|---|
| 466 | self._clear_selection_plot() |
|---|
| 467 | self._plot_page(pagemode="prev") |
|---|
| 468 | self._plot_selections() |
|---|
| 469 | |
|---|
| 470 | ### go to the next page |
|---|
| 471 | def next_page(self): |
|---|
| 472 | self.figmgr.toolbar.set_message('plotting the next page') |
|---|
| 473 | self._clear_selection_plot() |
|---|
| 474 | self._plot_page(pagemode="next") |
|---|
| 475 | self._plot_selections() |
|---|
| 476 | |
|---|
| 477 | ### actual plotting of the new page |
|---|
| 478 | def _plot_page(self,pagemode="next"): |
|---|
| 479 | if self.plotter._startrow <= 0: |
|---|
| 480 | msg = "The page counter is reset due to chages of plot settings. " |
|---|
| 481 | msg += "Plotting from the first page." |
|---|
| 482 | asaplog.post() |
|---|
| 483 | asaplog.push(msg) |
|---|
| 484 | asaplog.post('WARN') |
|---|
| 485 | goback = False |
|---|
| 486 | |
|---|
| 487 | self.plotter._plotter.hold() |
|---|
| 488 | self.plotter._plotter.legend(1) |
|---|
| 489 | #if goback: |
|---|
| 490 | # self._set_prevpage_counter() |
|---|
| 491 | self._set_plot_counter(pagemode) |
|---|
| 492 | #self.plotter._plotter.clear() |
|---|
| 493 | self.plotter._plot(self.plotter._data) |
|---|
| 494 | self.set_pagecounter(self._get_pagenum()) |
|---|
| 495 | self.plotter._plotter.release() |
|---|
| 496 | self.plotter._plotter.tidy() |
|---|
| 497 | self.plotter._plotter.show(hardrefresh=False) |
|---|
| 498 | |
|---|
| 499 | ### calculate the panel ID and start row to plot a page |
|---|
| 500 | #def _set_prevpage_counter(self): |
|---|
| 501 | def _set_plot_counter(self, pagemode): |
|---|
| 502 | ## page operation should be either "previous", "current", or "next" |
|---|
| 503 | availpage = ["p","c","n"] |
|---|
| 504 | pageop = pagemode[0].lower() |
|---|
| 505 | if not (pageop in availpage): |
|---|
| 506 | asaplog.post() |
|---|
| 507 | asaplot.push("Invalid page operation") |
|---|
| 508 | asaplot.post("ERROR") |
|---|
| 509 | if pageop == "n": |
|---|
| 510 | # nothing necessary to plot the next page |
|---|
| 511 | return |
|---|
| 512 | # set row and panel counters to those of the 1st panel of previous page |
|---|
| 513 | maxpanel = 16 |
|---|
| 514 | # the ID of the last panel in current plot |
|---|
| 515 | lastpanel = self.plotter._ipanel |
|---|
| 516 | # the number of current subplots |
|---|
| 517 | currpnum = len(self.plotter._plotter.subplots) |
|---|
| 518 | |
|---|
| 519 | # the nuber of previous subplots |
|---|
| 520 | start_ipanel = None |
|---|
| 521 | if pageop == "c": |
|---|
| 522 | start_ipanel = max(lastpanel-currpnum+1, 0) |
|---|
| 523 | else: |
|---|
| 524 | ## previous page |
|---|
| 525 | prevpnum = None |
|---|
| 526 | if self.plotter._rows and self.plotter._cols: |
|---|
| 527 | # when user set layout |
|---|
| 528 | prevpnum = self.plotter._rows*self.plotter._cols |
|---|
| 529 | else: |
|---|
| 530 | # no user specification |
|---|
| 531 | prevpnum = maxpanel |
|---|
| 532 | start_ipanel = max(lastpanel-currpnum-prevpnum+1, 0) |
|---|
| 533 | del prevpnum |
|---|
| 534 | |
|---|
| 535 | # set the pannel ID of the last panel of the prev(-prev) page |
|---|
| 536 | self.plotter._ipanel = start_ipanel-1 |
|---|
| 537 | if self.plotter._panelling == 'r': |
|---|
| 538 | self.plotter._startrow = start_ipanel |
|---|
| 539 | else: |
|---|
| 540 | # the start row number of the next panel |
|---|
| 541 | self.plotter._startrow = self.plotter._panelrows[start_ipanel] |
|---|
| 542 | del lastpanel,currpnum,start_ipanel |
|---|
| 543 | |
|---|
| 544 | ### refresh the page counter |
|---|
| 545 | def set_pagecounter(self,page): |
|---|
| 546 | nwidth = int(numpy.ceil(numpy.log10(max(page,1))))+1 |
|---|
| 547 | nwidth = max(nwidth,4) |
|---|
| 548 | formatstr = '%'+str(nwidth)+'d' |
|---|
| 549 | self.show_pagenum(page,formatstr) |
|---|
| 550 | |
|---|
| 551 | def show_pagenum(self,pagenum,formatstr): |
|---|
| 552 | # passed to backend dependent class |
|---|
| 553 | pass |
|---|
| 554 | |
|---|
| 555 | def _get_pagenum(self): |
|---|
| 556 | maxpanel = 16 |
|---|
| 557 | # get the ID of last panel in the current page |
|---|
| 558 | idlastpanel = self.plotter._ipanel |
|---|
| 559 | if self.plotter._rows and self.plotter._cols: |
|---|
| 560 | ppp = self.plotter._rows*self.plotter._cols |
|---|
| 561 | else: |
|---|
| 562 | ppp = maxpanel |
|---|
| 563 | return int(idlastpanel/ppp)+1 |
|---|
| 564 | |
|---|
| 565 | ##################################### |
|---|
| 566 | ## Backend dependent Classes ## |
|---|
| 567 | ##################################### |
|---|
| 568 | ### TkAgg |
|---|
| 569 | if matplotlib.get_backend() == 'TkAgg': |
|---|
| 570 | import Tkinter as Tk |
|---|
| 571 | from notationwindow import NotationWindowTkAgg |
|---|
| 572 | |
|---|
| 573 | class CustomFlagToolbarTkAgg(CustomFlagToolbarCommon, Tk.Frame): |
|---|
| 574 | def __init__(self,parent): |
|---|
| 575 | from asap.asapplotter import asapplotter |
|---|
| 576 | if not isinstance(parent,asapplotter): |
|---|
| 577 | return False |
|---|
| 578 | if not parent._plotter: |
|---|
| 579 | return False |
|---|
| 580 | self._p = parent._plotter |
|---|
| 581 | self.figmgr = self._p.figmgr |
|---|
| 582 | self.canvas = self.figmgr.canvas |
|---|
| 583 | self.mode = '' |
|---|
| 584 | self.button = True |
|---|
| 585 | self.pagecount = None |
|---|
| 586 | CustomFlagToolbarCommon.__init__(self,parent) |
|---|
| 587 | self.notewin=NotationWindowTkAgg(master=self.canvas) |
|---|
| 588 | self._add_custom_toolbar() |
|---|
| 589 | |
|---|
| 590 | def _add_custom_toolbar(self): |
|---|
| 591 | Tk.Frame.__init__(self,master=self.figmgr.window) |
|---|
| 592 | #self.bSpec=self._NewButton(master=self, |
|---|
| 593 | # text='spec value', |
|---|
| 594 | # command=self.spec_show) |
|---|
| 595 | |
|---|
| 596 | self.bRegion=self._NewButton(master=self, |
|---|
| 597 | text='region', |
|---|
| 598 | command=self.select_region) |
|---|
| 599 | self.bPanel=self._NewButton(master=self, |
|---|
| 600 | text='panel', |
|---|
| 601 | command=self.select_panel) |
|---|
| 602 | self.bClear=self._NewButton(master=self, |
|---|
| 603 | text='clear', |
|---|
| 604 | command=self.cancel_select) |
|---|
| 605 | self.bFlag=self._NewButton(master=self, |
|---|
| 606 | text='flag', |
|---|
| 607 | command=self.flag) |
|---|
| 608 | self.bUnflag=self._NewButton(master=self, |
|---|
| 609 | text='unflag', |
|---|
| 610 | command=self.unflag) |
|---|
| 611 | |
|---|
| 612 | self.bStat=self._NewButton(master=self, |
|---|
| 613 | text='statistics', |
|---|
| 614 | command=self.stat_cal) |
|---|
| 615 | |
|---|
| 616 | self.bNote=self._NewButton(master=self, |
|---|
| 617 | text='notation', |
|---|
| 618 | command=self.modify_note) |
|---|
| 619 | |
|---|
| 620 | self.bQuit=self._NewButton(master=self, |
|---|
| 621 | text='Quit', |
|---|
| 622 | #file="stock_close.ppm", |
|---|
| 623 | command=self.quit, |
|---|
| 624 | side=Tk.RIGHT) |
|---|
| 625 | |
|---|
| 626 | # page change oparations |
|---|
| 627 | frPage = Tk.Frame(master=self,borderwidth=2,relief=Tk.GROOVE) |
|---|
| 628 | frPage.pack(ipadx=2,padx=10,side=Tk.RIGHT) |
|---|
| 629 | self.lPagetitle = Tk.Label(master=frPage,text='Page:',padx=5) |
|---|
| 630 | #width=8,anchor=Tk.E,padx=5) |
|---|
| 631 | self.lPagetitle.pack(side=Tk.LEFT) |
|---|
| 632 | self.pagecount = Tk.StringVar(master=frPage) |
|---|
| 633 | self.lPagecount = Tk.Label(master=frPage, |
|---|
| 634 | textvariable=self.pagecount, |
|---|
| 635 | padx=5,bg='white') |
|---|
| 636 | self.lPagecount.pack(side=Tk.LEFT,padx=3) |
|---|
| 637 | |
|---|
| 638 | self.bNext=self._NewButton(master=frPage, |
|---|
| 639 | text=' + ', |
|---|
| 640 | #file="hand.ppm", |
|---|
| 641 | command=self.next_page) |
|---|
| 642 | self.bPrev=self._NewButton(master=frPage, |
|---|
| 643 | text=' - ', |
|---|
| 644 | command=self.prev_page) |
|---|
| 645 | |
|---|
| 646 | if os.uname()[0] != 'Darwin': |
|---|
| 647 | self.bPrev.config(padx=5) |
|---|
| 648 | self.bNext.config(padx=5) |
|---|
| 649 | |
|---|
| 650 | self.pack(side=Tk.BOTTOM,fill=Tk.BOTH) |
|---|
| 651 | self.pagecount.set(' '*4) |
|---|
| 652 | |
|---|
| 653 | self.disable_button() |
|---|
| 654 | return #self |
|---|
| 655 | |
|---|
| 656 | def _NewButton(self, master, text, command, side=Tk.LEFT,file=None): |
|---|
| 657 | img = None |
|---|
| 658 | if file: |
|---|
| 659 | file = os.path.join(matplotlib.rcParams['datapath'], 'images', file) |
|---|
| 660 | img = Tk.PhotoImage(master=master, file=file) |
|---|
| 661 | |
|---|
| 662 | if os.uname()[0] == 'Darwin': |
|---|
| 663 | b = Tk.Button(master=master, text=text, image=img, |
|---|
| 664 | command=command) |
|---|
| 665 | if img: b.image = img |
|---|
| 666 | else: |
|---|
| 667 | b = Tk.Button(master=master, text=text, image=img, padx=2, pady=2, |
|---|
| 668 | command=command) |
|---|
| 669 | if img: b.image = img |
|---|
| 670 | b.pack(side=side) |
|---|
| 671 | return b |
|---|
| 672 | |
|---|
| 673 | def show_pagenum(self,pagenum,formatstr): |
|---|
| 674 | self.pagecount.set(formatstr % (pagenum)) |
|---|
| 675 | |
|---|
| 676 | def spec_show(self): |
|---|
| 677 | if not self.figmgr.toolbar.mode == '' or not self.button: return |
|---|
| 678 | self.figmgr.toolbar.set_message('spec value: drag on a spec') |
|---|
| 679 | if self.mode == 'spec': return |
|---|
| 680 | self.mode='spec' |
|---|
| 681 | self.notewin.close_widgets() |
|---|
| 682 | self.__disconnect_event() |
|---|
| 683 | self._p.register('button_press',self._select_spectrum) |
|---|
| 684 | |
|---|
| 685 | def modify_note(self): |
|---|
| 686 | if not self.figmgr.toolbar.mode == '': return |
|---|
| 687 | self.figmgr.toolbar.set_message('text: select a position/text') |
|---|
| 688 | if self.mode == 'note': |
|---|
| 689 | self.bNote.config(relief='raised') |
|---|
| 690 | self.mode='none' |
|---|
| 691 | self.spec_show() |
|---|
| 692 | return |
|---|
| 693 | self.bNote.config(relief='sunken') |
|---|
| 694 | self.bRegion.config(relief='raised') |
|---|
| 695 | self.bPanel.config(relief='raised') |
|---|
| 696 | self.mode='note' |
|---|
| 697 | self.__disconnect_event() |
|---|
| 698 | self._p.register('button_press',self._mod_note) |
|---|
| 699 | |
|---|
| 700 | def select_region(self): |
|---|
| 701 | if not self.figmgr.toolbar.mode == '' or not self.button: return |
|---|
| 702 | self.figmgr.toolbar.set_message('select rectangle regions') |
|---|
| 703 | if self.mode == 'region': |
|---|
| 704 | self.bRegion.config(relief='raised') |
|---|
| 705 | self.mode='none' |
|---|
| 706 | self.spec_show() |
|---|
| 707 | return |
|---|
| 708 | self.bNote.config(relief='raised') |
|---|
| 709 | self.bRegion.config(relief='sunken') |
|---|
| 710 | self.bPanel.config(relief='raised') |
|---|
| 711 | self.mode='region' |
|---|
| 712 | self.notewin.close_widgets() |
|---|
| 713 | self.__disconnect_event() |
|---|
| 714 | self._p.register('button_press',self._add_region) |
|---|
| 715 | |
|---|
| 716 | def select_panel(self): |
|---|
| 717 | if not self.figmgr.toolbar.mode == '' or not self.button: return |
|---|
| 718 | self.figmgr.toolbar.set_message('select panels') |
|---|
| 719 | if self.mode == 'panel': |
|---|
| 720 | self.bPanel.config(relief='raised') |
|---|
| 721 | self.mode='none' |
|---|
| 722 | self.spec_show() |
|---|
| 723 | return |
|---|
| 724 | self.bNote.config(relief='raised') |
|---|
| 725 | self.bRegion.config(relief='raised') |
|---|
| 726 | self.bPanel.config(relief='sunken') |
|---|
| 727 | self.mode='panel' |
|---|
| 728 | self.notewin.close_widgets() |
|---|
| 729 | self.__disconnect_event() |
|---|
| 730 | self._p.register('button_press',self._add_panel) |
|---|
| 731 | |
|---|
| 732 | def quit(self): |
|---|
| 733 | self.__disconnect_event() |
|---|
| 734 | #self.delete_bar() |
|---|
| 735 | self.disable_button() |
|---|
| 736 | self.figmgr.window.wm_withdraw() |
|---|
| 737 | |
|---|
| 738 | def enable_button(self): |
|---|
| 739 | if self.button: return |
|---|
| 740 | self.bRegion.config(state=Tk.NORMAL) |
|---|
| 741 | self.bPanel.config(state=Tk.NORMAL) |
|---|
| 742 | self.bClear.config(state=Tk.NORMAL) |
|---|
| 743 | self.bFlag.config(state=Tk.NORMAL) |
|---|
| 744 | self.bUnflag.config(state=Tk.NORMAL) |
|---|
| 745 | self.bStat.config(state=Tk.NORMAL) |
|---|
| 746 | self.button=True |
|---|
| 747 | self.spec_show() |
|---|
| 748 | |
|---|
| 749 | def disable_button(self): |
|---|
| 750 | ## disable buttons which don't work for plottp |
|---|
| 751 | if not self.button: return |
|---|
| 752 | self.bRegion.config(relief='raised', state=Tk.DISABLED) |
|---|
| 753 | self.bPanel.config(relief='raised', state=Tk.DISABLED) |
|---|
| 754 | self.bClear.config(state=Tk.DISABLED) |
|---|
| 755 | self.bFlag.config(state=Tk.DISABLED) |
|---|
| 756 | self.bUnflag.config(state=Tk.DISABLED) |
|---|
| 757 | self.bStat.config(state=Tk.DISABLED) |
|---|
| 758 | self.bNext.config(state=Tk.DISABLED) |
|---|
| 759 | self.bPrev.config(state=Tk.DISABLED) |
|---|
| 760 | self.button=False |
|---|
| 761 | self.mode='' |
|---|
| 762 | self.notewin.close_widgets() |
|---|
| 763 | self.__disconnect_event() |
|---|
| 764 | |
|---|
| 765 | def enable_next(self): |
|---|
| 766 | self.bNext.config(state=Tk.NORMAL) |
|---|
| 767 | |
|---|
| 768 | def disable_next(self): |
|---|
| 769 | self.bNext.config(state=Tk.DISABLED) |
|---|
| 770 | |
|---|
| 771 | def enable_prev(self): |
|---|
| 772 | self.bPrev.config(state=Tk.NORMAL) |
|---|
| 773 | |
|---|
| 774 | def disable_prev(self): |
|---|
| 775 | self.bPrev.config(state=Tk.DISABLED) |
|---|
| 776 | |
|---|
| 777 | def delete_bar(self): |
|---|
| 778 | self.__disconnect_event() |
|---|
| 779 | self.destroy() |
|---|
| 780 | |
|---|
| 781 | def __disconnect_event(self): |
|---|
| 782 | self._p.register('button_press',None) |
|---|
| 783 | self._p.register('button_release',None) |
|---|
