| 1 | from asap.parameters import rcParams |
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| 2 | from asap.selector import selector |
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| 3 | from asap.scantable import scantable |
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| 4 | from asap.logging import asaplog, asaplog_post_dec |
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| 5 | import matplotlib.axes |
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| 6 | from matplotlib.font_manager import FontProperties |
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| 7 | from matplotlib.text import Text |
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| 8 | |
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| 9 | import re |
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| 10 | |
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| 11 | def new_asaplot(visible=None,**kwargs): |
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| 12 | """ |
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| 13 | Returns a new asaplot instance based on the backend settings. |
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| 14 | """ |
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| 15 | if visible == None: |
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| 16 | visible = rcParams['plotter.gui'] |
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| 17 | |
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| 18 | backend=matplotlib.get_backend() |
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| 19 | if not visible: |
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| 20 | from asap.asaplot import asaplot |
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| 21 | elif backend == 'TkAgg': |
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| 22 | from asap.asaplotgui import asaplotgui as asaplot |
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| 23 | elif backend == 'Qt4Agg': |
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| 24 | from asap.asaplotgui_qt4 import asaplotgui as asaplot |
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| 25 | elif backend == 'GTkAgg': |
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| 26 | from asap.asaplotgui_gtk import asaplotgui as asaplot |
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| 27 | else: |
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| 28 | from asap.asaplot import asaplot |
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| 29 | return asaplot(**kwargs) |
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| 30 | |
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| 31 | class asapplotter: |
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| 32 | """ |
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| 33 | The ASAP plotter. |
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| 34 | By default the plotter is set up to plot polarisations |
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| 35 | 'colour stacked' and scantables across panels. |
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| 36 | |
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| 37 | .. note:: |
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| 38 | |
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| 39 | Currenly it only plots 'spectra' not Tsys or |
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| 40 | other variables. |
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| 41 | |
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| 42 | """ |
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| 43 | def __init__(self, visible=None , **kwargs): |
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| 44 | self._visible = rcParams['plotter.gui'] |
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| 45 | if visible is not None: |
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| 46 | self._visible = visible |
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| 47 | self._plotter = self._newplotter(**kwargs) |
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| 48 | # additional tool bar |
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| 49 | self._plotter.figmgr.casabar=self._new_custombar() |
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| 50 | |
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| 51 | self._panelling = None |
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| 52 | self._stacking = None |
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| 53 | self.set_panelling() |
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| 54 | self.set_stacking() |
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| 55 | self._rows = None |
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| 56 | self._cols = None |
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| 57 | self._autoplot = False |
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| 58 | self._minmaxx = None |
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| 59 | self._minmaxy = None |
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| 60 | self._datamask = None |
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| 61 | self._data = None |
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| 62 | self._lmap = None |
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| 63 | self._title = None |
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| 64 | self._ordinate = None |
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| 65 | self._abcissa = None |
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| 66 | self._abcunit = None |
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| 67 | self._usermask = [] |
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| 68 | self._maskselection = None |
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| 69 | self._selection = selector() |
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| 70 | self._hist = rcParams['plotter.histogram'] |
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| 71 | self._fp = FontProperties() |
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| 72 | self._margins = self.set_margin(refresh=False) |
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| 73 | self._offset = None |
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| 74 | self._startrow = 0 |
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| 75 | self._ipanel = -1 |
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| 76 | self._panelrows = [] |
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| 77 | self._headtext={'string': None, 'textobj': None} |
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| 78 | |
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| 79 | def _translate(self, instr): |
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| 80 | keys = "s b i p t r".split() |
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| 81 | if isinstance(instr, str): |
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| 82 | for key in keys: |
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| 83 | if instr.lower().startswith(key): |
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| 84 | return key |
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| 85 | return None |
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| 86 | |
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| 87 | def _newplotter(self, **kwargs): |
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| 88 | return new_asaplot(self._visible,**kwargs) |
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| 89 | |
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| 90 | def _new_custombar(self): |
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| 91 | backend=matplotlib.get_backend() |
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| 92 | if not self._visible: |
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| 93 | return None |
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| 94 | elif backend == "TkAgg": |
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| 95 | from asap.customgui_tkagg import CustomToolbarTkAgg |
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| 96 | return CustomToolbarTkAgg(self) |
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| 97 | elif backend == "Qt4Agg": |
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| 98 | from asap.customgui_qt4agg import CustomToolbarQT4Agg |
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| 99 | return CustomToolbarQT4Agg(self) |
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| 100 | return None |
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| 101 | |
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| 102 | def casabar_exists(self): |
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| 103 | if not hasattr(self._plotter.figmgr,'casabar'): |
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| 104 | return False |
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| 105 | elif self._plotter.figmgr.casabar: |
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| 106 | return True |
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| 107 | return False |
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| 108 | |
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| 109 | @asaplog_post_dec |
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| 110 | def plot(self, scan=None): |
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| 111 | """ |
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| 112 | Plot a scantable. |
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| 113 | Parameters: |
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| 114 | scan: a scantable |
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| 115 | Note: |
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| 116 | If a scantable was specified in a previous call |
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| 117 | to plot, no argument has to be given to 'replot' |
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| 118 | NO checking is done that the abcissas of the scantable |
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| 119 | are consistent e.g. all 'channel' or all 'velocity' etc. |
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| 120 | """ |
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| 121 | self._startrow = 0 |
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| 122 | self._ipanel = -1 |
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| 123 | self._reset_header() |
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| 124 | if self._plotter.is_dead: |
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| 125 | if self.casabar_exists(): |
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| 126 | del self._plotter.figmgr.casabar |
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| 127 | self._plotter = self._newplotter() |
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| 128 | self._plotter.figmgr.casabar=self._new_custombar() |
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| 129 | if self.casabar_exists(): |
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| 130 | self._plotter.figmgr.casabar.set_pagecounter(1) |
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| 131 | self._panelrows = [] |
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| 132 | self._plotter.hold() |
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| 133 | #self._plotter.clear() |
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| 134 | if not self._data and not scan: |
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| 135 | msg = "Input is not a scantable" |
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| 136 | raise TypeError(msg) |
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| 137 | if scan: |
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| 138 | self.set_data(scan, refresh=False) |
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| 139 | self._plot(self._data) |
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| 140 | if self._minmaxy is not None: |
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| 141 | self._plotter.set_limits(ylim=self._minmaxy) |
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| 142 | if self.casabar_exists(): self._plotter.figmgr.casabar.enable_button() |
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| 143 | self._plotter.release() |
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| 144 | self._plotter.tidy() |
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| 145 | self._plotter.show(hardrefresh=False) |
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| 146 | return |
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| 147 | |
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| 148 | def gca(self): |
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| 149 | return self._plotter.figure.gca() |
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| 150 | |
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| 151 | def refresh(self): |
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| 152 | """Do a soft refresh""" |
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| 153 | self._plotter.figure.show() |
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| 154 | |
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| 155 | def create_mask(self, nwin=1, panel=0, color=None): |
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| 156 | """ |
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| 157 | Interactively define a mask. It retruns a mask that is equivalent to |
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| 158 | the one created manually with scantable.create_mask. |
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| 159 | Parameters: |
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| 160 | nwin: The number of mask windows to create interactively |
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| 161 | default is 1. |
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| 162 | panel: Which panel to use for mask selection. This is useful |
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| 163 | if different IFs are spread over panels (default 0) |
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| 164 | """ |
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| 165 | if self._data is None: |
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| 166 | return [] |
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| 167 | outmask = [] |
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| 168 | self._plotter.subplot(panel) |
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| 169 | xmin, xmax = self._plotter.axes.get_xlim() |
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| 170 | marg = 0.05*(xmax-xmin) |
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| 171 | self._plotter.axes.set_xlim(xmin-marg, xmax+marg) |
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| 172 | self.refresh() |
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| 173 | |
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| 174 | def cleanup(lines=False, texts=False, refresh=False): |
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| 175 | if lines: |
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| 176 | del self._plotter.axes.lines[-1] |
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| 177 | if texts: |
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| 178 | del self._plotter.axes.texts[-1] |
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| 179 | if refresh: |
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| 180 | self.refresh() |
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| 181 | |
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| 182 | for w in xrange(nwin): |
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| 183 | wpos = [] |
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| 184 | self.text(0.05,1.0, "Add start boundary", |
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| 185 | coords="relative", fontsize=10) |
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| 186 | point = self._plotter.get_point() |
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| 187 | cleanup(texts=True) |
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| 188 | if point is None: |
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| 189 | continue |
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| 190 | wpos.append(point[0]) |
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| 191 | self.axvline(wpos[0], color=color) |
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| 192 | self.text(0.05,1.0, "Add end boundary", coords="relative", fontsize=10) |
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| 193 | point = self._plotter.get_point() |
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| 194 | cleanup(texts=True, lines=True) |
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| 195 | if point is None: |
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| 196 | self.refresh() |
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| 197 | continue |
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| 198 | wpos.append(point[0]) |
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| 199 | self.axvspan(wpos[0], wpos[1], alpha=0.1, |
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| 200 | edgecolor=color, facecolor=color) |
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| 201 | ymin, ymax = self._plotter.axes.get_ylim() |
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| 202 | outmask.append(wpos) |
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| 203 | |
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| 204 | self._plotter.axes.set_xlim(xmin, xmax) |
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| 205 | self.refresh() |
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| 206 | if len(outmask) > 0: |
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| 207 | return self._data.create_mask(*outmask) |
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| 208 | return [] |
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| 209 | |
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| 210 | # forwards to matplotlib axes |
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| 211 | def text(self, *args, **kwargs): |
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| 212 | if kwargs.has_key("interactive"): |
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| 213 | if kwargs.pop("interactive"): |
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| 214 | pos = self._plotter.get_point() |
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| 215 | args = tuple(pos)+args |
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| 216 | self._axes_callback("text", *args, **kwargs) |
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| 217 | |
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| 218 | text.__doc__ = matplotlib.axes.Axes.text.__doc__ |
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| 219 | |
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| 220 | def arrow(self, *args, **kwargs): |
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| 221 | if kwargs.has_key("interactive"): |
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| 222 | if kwargs.pop("interactive"): |
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| 223 | pos = self._plotter.get_region() |
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| 224 | dpos = (pos[0][0], pos[0][1], |
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| 225 | pos[1][0]-pos[0][0], |
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| 226 | pos[1][1] - pos[0][1]) |
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| 227 | args = dpos + args |
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| 228 | self._axes_callback("arrow", *args, **kwargs) |
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| 229 | |
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| 230 | arrow.__doc__ = matplotlib.axes.Axes.arrow.__doc__ |
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| 231 | |
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| 232 | def annotate(self, text, xy=None, xytext=None, **kwargs): |
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| 233 | if kwargs.has_key("interactive"): |
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| 234 | if kwargs.pop("interactive"): |
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| 235 | xy = self._plotter.get_point() |
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| 236 | xytext = self._plotter.get_point() |
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| 237 | if not kwargs.has_key("arrowprops"): |
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| 238 | kwargs["arrowprops"] = dict(arrowstyle="->") |
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| 239 | self._axes_callback("annotate", text, xy, xytext, **kwargs) |
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| 240 | |
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| 241 | annotate.__doc__ = matplotlib.axes.Axes.annotate.__doc__ |
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| 242 | |
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| 243 | def axvline(self, *args, **kwargs): |
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| 244 | if kwargs.has_key("interactive"): |
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| 245 | if kwargs.pop("interactive"): |
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| 246 | pos = self._plotter.get_point() |
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| 247 | args = (pos[0],)+args |
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| 248 | self._axes_callback("axvline", *args, **kwargs) |
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| 249 | |
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| 250 | axvline.__doc__ = matplotlib.axes.Axes.axvline.__doc__ |
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| 251 | |
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| 252 | def axhline(self, *args, **kwargs): |
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| 253 | if kwargs.has_key("interactive"): |
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| 254 | if kwargs.pop("interactive"): |
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| 255 | pos = self._plotter.get_point() |
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| 256 | args = (pos[1],)+args |
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| 257 | self._axes_callback("axhline", *args, **kwargs) |
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| 258 | |
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| 259 | axhline.__doc__ = matplotlib.axes.Axes.axhline.__doc__ |
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| 260 | |
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| 261 | def axvspan(self, *args, **kwargs): |
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| 262 | if kwargs.has_key("interactive"): |
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| 263 | if kwargs.pop("interactive"): |
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| 264 | pos = self._plotter.get_region() |
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| 265 | dpos = (pos[0][0], pos[1][0]) |
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| 266 | args = dpos + args |
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| 267 | self._axes_callback("axvspan", *args, **kwargs) |
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| 268 | # hack to preventy mpl from redrawing the patch |
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| 269 | # it seem to convert the patch into lines on every draw. |
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| 270 | # This doesn't happen in a test script??? |
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| 271 | #del self._plotter.axes.patches[-1] |
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| 272 | |
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| 273 | axvspan.__doc__ = matplotlib.axes.Axes.axvspan.__doc__ |
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| 274 | |
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| 275 | def axhspan(self, *args, **kwargs): |
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| 276 | if kwargs.has_key("interactive"): |
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| 277 | if kwargs.pop("interactive"): |
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| 278 | pos = self._plotter.get_region() |
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| 279 | dpos = (pos[0][1], pos[1][1]) |
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| 280 | args = dpos + args |
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| 281 | self._axes_callback("axhspan", *args, **kwargs) |
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| 282 | # hack to preventy mpl from redrawing the patch |
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| 283 | # it seem to convert the patch into lines on every draw. |
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| 284 | # This doesn't happen in a test script??? |
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| 285 | #del self._plotter.axes.patches[-1] |
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| 286 | |
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| 287 | axhspan.__doc__ = matplotlib.axes.Axes.axhspan.__doc__ |
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| 288 | |
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| 289 | def _axes_callback(self, axesfunc, *args, **kwargs): |
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| 290 | panel = 0 |
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| 291 | if kwargs.has_key("panel"): |
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| 292 | panel = kwargs.pop("panel") |
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| 293 | coords = None |
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| 294 | if kwargs.has_key("coords"): |
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| 295 | coords = kwargs.pop("coords") |
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| 296 | if coords.lower() == 'world': |
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| 297 | kwargs["transform"] = self._plotter.axes.transData |
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| 298 | elif coords.lower() == 'relative': |
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| 299 | kwargs["transform"] = self._plotter.axes.transAxes |
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| 300 | self._plotter.subplot(panel) |
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| 301 | self._plotter.axes.set_autoscale_on(False) |
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| 302 | getattr(self._plotter.axes, axesfunc)(*args, **kwargs) |
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| 303 | self._plotter.show(False) |
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| 304 | self._plotter.axes.set_autoscale_on(True) |
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| 305 | # end matplotlib.axes fowarding functions |
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| 306 | |
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| 307 | @asaplog_post_dec |
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| 308 | def set_data(self, scan, refresh=True): |
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| 309 | """ |
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| 310 | Set a scantable to plot. |
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| 311 | Parameters: |
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| 312 | scan: a scantable |
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| 313 | refresh: True (default) or False. If True, the plot is |
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| 314 | replotted based on the new parameter setting(s). |
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| 315 | Otherwise,the parameter(s) are set without replotting. |
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| 316 | Note: |
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| 317 | The user specified masks and data selections will be reset |
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| 318 | if a new scantable is set. This method should be called before |
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| 319 | setting data selections (set_selection) and/or masks (set_mask). |
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| 320 | """ |
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| 321 | from asap import scantable |
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| 322 | if isinstance(scan, scantable): |
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| 323 | if self._data is not None: |
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| 324 | if scan != self._data: |
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| 325 | del self._data |
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| 326 | self._data = scan |
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| 327 | # reset |
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| 328 | self._reset() |
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| 329 | msg = "A new scantable is set to the plotter. "\ |
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| 330 | "The masks and data selections are reset." |
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| 331 | asaplog.push( msg ) |
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| 332 | else: |
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| 333 | self._data = scan |
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| 334 | self._reset() |
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| 335 | else: |
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| 336 | msg = "Input is not a scantable" |
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| 337 | raise TypeError(msg) |
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| 338 | |
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| 339 | # ranges become invalid when unit changes |
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| 340 | if self._abcunit and self._abcunit != self._data.get_unit(): |
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| 341 | self._minmaxx = None |
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| 342 | self._minmaxy = None |
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| 343 | self._abcunit = self._data.get_unit() |
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| 344 | self._datamask = None |
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| 345 | if refresh: self.plot() |
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| 346 | |
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| 347 | @asaplog_post_dec |
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| 348 | def set_mode(self, stacking=None, panelling=None, refresh=True): |
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| 349 | """ |
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| 350 | Set the plots look and feel, i.e. what you want to see on the plot. |
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| 351 | Parameters: |
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| 352 | stacking: tell the plotter which variable to plot |
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| 353 | as line colour overlays (default 'pol') |
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| 354 | panelling: tell the plotter which variable to plot |
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| 355 | across multiple panels (default 'scan' |
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| 356 | refresh: True (default) or False. If True, the plot is |
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| 357 | replotted based on the new parameter setting(s). |
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| 358 | Otherwise,the parameter(s) are set without replotting. |
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| 359 | Note: |
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| 360 | Valid modes are: |
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| 361 | 'beam' 'Beam' 'b': Beams |
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| 362 | 'if' 'IF' 'i': IFs |
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| 363 | 'pol' 'Pol' 'p': Polarisations |
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| 364 | 'scan' 'Scan' 's': Scans |
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| 365 | 'time' 'Time' 't': Times |
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| 366 | 'row' 'Row' 'r': Rows |
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| 367 | When either 'stacking' or 'panelling' is set to 'row', |
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| 368 | the other parameter setting is ignored. |
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| 369 | """ |
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| 370 | msg = "Invalid mode" |
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| 371 | if not self.set_panelling(panelling) or \ |
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| 372 | not self.set_stacking(stacking): |
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| 373 | raise TypeError(msg) |
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| 374 | #if self._panelling == 'r': |
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| 375 | # self._stacking = '_r' |
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| 376 | #if self._stacking == 'r': |
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| 377 | # self._panelling = '_r' |
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| 378 | if refresh and self._data: self.plot(self._data) |
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| 379 | return |
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| 380 | |
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| 381 | def set_panelling(self, what=None): |
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| 382 | """Set the 'panelling' mode i.e. which type of spectra should be |
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| 383 | spread across different panels. |
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| 384 | """ |
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| 385 | |
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| 386 | mode = what |
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| 387 | if mode is None: |
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| 388 | mode = rcParams['plotter.panelling'] |
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| 389 | md = self._translate(mode) |
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| 390 | if md: |
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| 391 | self._panelling = md |
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| 392 | self._title = None |
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| 393 | #if md == 'r': |
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| 394 | # self._stacking = '_r' |
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| 395 | # you need to reset counters for multi page plotting |
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| 396 | self._reset_counters() |
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| 397 | return True |
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| 398 | return False |
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| 399 | |
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| 400 | def set_layout(self,rows=None,cols=None,refresh=True): |
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| 401 | """ |
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| 402 | Set the multi-panel layout, i.e. how many rows and columns plots |
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| 403 | are visible. |
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| 404 | Parameters: |
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| 405 | rows: The number of rows of plots |
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| 406 | cols: The number of columns of plots |
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| 407 | refresh: True (default) or False. If True, the plot is |
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| 408 | replotted based on the new parameter setting(s). |
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| 409 | Otherwise,the parameter(s) are set without replotting. |
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| 410 | Note: |
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| 411 | If no argument is given, the potter reverts to its auto-plot |
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| 412 | behaviour. |
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| 413 | """ |
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| 414 | self._rows = rows |
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| 415 | self._cols = cols |
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| 416 | if refresh and self._data: self.plot(self._data) |
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| 417 | return |
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| 418 | |
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| 419 | def set_stacking(self, what=None): |
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| 420 | """Set the 'stacking' mode i.e. which type of spectra should be |
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| 421 | overlayed. |
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| 422 | """ |
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| 423 | mode = what |
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| 424 | if mode is None: |
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| 425 | mode = rcParams['plotter.stacking'] |
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| 426 | md = self._translate(mode) |
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| 427 | if md: |
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| 428 | self._stacking = md |
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| 429 | self._lmap = None |
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| 430 | #if md == 'r': |
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| 431 | # self._panelling = '_r' |
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| 432 | # you need to reset counters for multi page plotting |
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| 433 | self._reset_counters() |
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| 434 | return True |
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| 435 | return False |
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| 436 | |
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| 437 | def _reset_counters(self): |
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| 438 | self._startrow = 0 |
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| 439 | self._ipanel = -1 |
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| 440 | self._panelrows = [] |
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| 441 | |
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| 442 | def set_range(self,xstart=None,xend=None,ystart=None,yend=None,refresh=True, offset=None): |
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| 443 | """ |
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| 444 | Set the range of interest on the abcissa of the plot |
|---|
| 445 | Parameters: |
|---|
| 446 | [x,y]start,[x,y]end: The start and end points of the 'zoom' window |
|---|
| 447 | refresh: True (default) or False. If True, the plot is |
|---|
| 448 | replotted based on the new parameter setting(s). |
|---|
| 449 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 450 | offset: shift the abcissa by the given amount. The abcissa label will |
|---|
| 451 | have '(relative)' appended to it. |
|---|
| 452 | Note: |
|---|
| 453 | These become non-sensical when the unit changes. |
|---|
| 454 | use plotter.set_range() without parameters to reset |
|---|
| 455 | |
|---|
| 456 | """ |
|---|
| 457 | self._offset = offset |
|---|
| 458 | if xstart is None and xend is None: |
|---|
| 459 | self._minmaxx = None |
|---|
| 460 | else: |
|---|
| 461 | self._minmaxx = [xstart,xend] |
|---|
| 462 | if ystart is None and yend is None: |
|---|
| 463 | self._minmaxy = None |
|---|
| 464 | else: |
|---|
| 465 | self._minmaxy = [ystart,yend] |
|---|
| 466 | if refresh and self._data: self.plot(self._data) |
|---|
| 467 | return |
|---|
| 468 | |
|---|
| 469 | def set_legend(self, mp=None, fontsize = None, mode = 0, refresh=True): |
|---|
| 470 | """ |
|---|
| 471 | Specify a mapping for the legend instead of using the default |
|---|
| 472 | indices: |
|---|
| 473 | Parameters: |
|---|
| 474 | mp: a list of 'strings'. This should have the same length |
|---|
| 475 | as the number of elements on the legend and then maps |
|---|
| 476 | to the indeces in order. It is possible to uses latex |
|---|
| 477 | math expression. These have to be enclosed in r'', |
|---|
| 478 | e.g. r'$x^{2}$' |
|---|
| 479 | fontsize: The font size of the label (default None) |
|---|
| 480 | mode: where to display the legend |
|---|
| 481 | Any other value for loc else disables the legend: |
|---|
| 482 | 0: auto |
|---|
| 483 | 1: upper right |
|---|
| 484 | 2: upper left |
|---|
| 485 | 3: lower left |
|---|
| 486 | 4: lower right |
|---|
| 487 | 5: right |
|---|
| 488 | 6: center left |
|---|
| 489 | 7: center right |
|---|
| 490 | 8: lower center |
|---|
| 491 | 9: upper center |
|---|
| 492 | 10: center |
|---|
| 493 | refresh: True (default) or False. If True, the plot is |
|---|
| 494 | replotted based on the new parameter setting(s). |
|---|
| 495 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 496 | |
|---|
| 497 | Example: |
|---|
| 498 | If the data has two IFs/rest frequencies with index 0 and 1 |
|---|
| 499 | for CO and SiO: |
|---|
| 500 | plotter.set_stacking('i') |
|---|
| 501 | plotter.set_legend(['CO','SiO']) |
|---|
| 502 | plotter.plot() |
|---|
| 503 | plotter.set_legend([r'$^{12}CO$', r'SiO']) |
|---|
| 504 | """ |
|---|
| 505 | self._lmap = mp |
|---|
| 506 | self._plotter.legend(mode) |
|---|
| 507 | if isinstance(fontsize, int): |
|---|
| 508 | from matplotlib import rc as rcp |
|---|
| 509 | rcp('legend', fontsize=fontsize) |
|---|
| 510 | if refresh and self._data: self.plot(self._data) |
|---|
| 511 | return |
|---|
| 512 | |
|---|
| 513 | def set_title(self, title=None, fontsize=None, refresh=True): |
|---|
| 514 | """ |
|---|
| 515 | Set the title of the plot. If multiple panels are plotted, |
|---|
| 516 | multiple titles have to be specified. |
|---|
| 517 | Parameters: |
|---|
| 518 | refresh: True (default) or False. If True, the plot is |
|---|
| 519 | replotted based on the new parameter setting(s). |
|---|
| 520 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 521 | Example: |
|---|
| 522 | # two panels are visible on the plotter |
|---|
| 523 | plotter.set_title(["First Panel","Second Panel"]) |
|---|
| 524 | """ |
|---|
| 525 | self._title = title |
|---|
| 526 | if isinstance(fontsize, int): |
|---|
| 527 | from matplotlib import rc as rcp |
|---|
| 528 | rcp('axes', titlesize=fontsize) |
|---|
| 529 | if refresh and self._data: self.plot(self._data) |
|---|
| 530 | return |
|---|
| 531 | |
|---|
| 532 | def set_ordinate(self, ordinate=None, fontsize=None, refresh=True): |
|---|
| 533 | """ |
|---|
| 534 | Set the y-axis label of the plot. If multiple panels are plotted, |
|---|
| 535 | multiple labels have to be specified. |
|---|
| 536 | Parameters: |
|---|
| 537 | ordinate: a list of ordinate labels. None (default) let |
|---|
| 538 | data determine the labels |
|---|
| 539 | refresh: True (default) or False. If True, the plot is |
|---|
| 540 | replotted based on the new parameter setting(s). |
|---|
| 541 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 542 | Example: |
|---|
| 543 | # two panels are visible on the plotter |
|---|
| 544 | plotter.set_ordinate(["First Y-Axis","Second Y-Axis"]) |
|---|
| 545 | """ |
|---|
| 546 | self._ordinate = ordinate |
|---|
| 547 | if isinstance(fontsize, int): |
|---|
| 548 | from matplotlib import rc as rcp |
|---|
| 549 | rcp('axes', labelsize=fontsize) |
|---|
| 550 | rcp('ytick', labelsize=fontsize) |
|---|
| 551 | if refresh and self._data: self.plot(self._data) |
|---|
| 552 | return |
|---|
| 553 | |
|---|
| 554 | def set_abcissa(self, abcissa=None, fontsize=None, refresh=True): |
|---|
| 555 | """ |
|---|
| 556 | Set the x-axis label of the plot. If multiple panels are plotted, |
|---|
| 557 | multiple labels have to be specified. |
|---|
| 558 | Parameters: |
|---|
| 559 | abcissa: a list of abcissa labels. None (default) let |
|---|
| 560 | data determine the labels |
|---|
| 561 | refresh: True (default) or False. If True, the plot is |
|---|
| 562 | replotted based on the new parameter setting(s). |
|---|
| 563 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 564 | Example: |
|---|
| 565 | # two panels are visible on the plotter |
|---|
| 566 | plotter.set_ordinate(["First X-Axis","Second X-Axis"]) |
|---|
| 567 | """ |
|---|
| 568 | self._abcissa = abcissa |
|---|
| 569 | if isinstance(fontsize, int): |
|---|
| 570 | from matplotlib import rc as rcp |
|---|
| 571 | rcp('axes', labelsize=fontsize) |
|---|
| 572 | rcp('xtick', labelsize=fontsize) |
|---|
| 573 | if refresh and self._data: self.plot(self._data) |
|---|
| 574 | return |
|---|
| 575 | |
|---|
| 576 | def set_colors(self, colmap, refresh=True): |
|---|
| 577 | """ |
|---|
| 578 | Set the colours to be used. The plotter will cycle through |
|---|
| 579 | these colours when lines are overlaid (stacking mode). |
|---|
| 580 | Parameters: |
|---|
| 581 | colmap: a list of colour names |
|---|
| 582 | refresh: True (default) or False. If True, the plot is |
|---|
| 583 | replotted based on the new parameter setting(s). |
|---|
| 584 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 585 | Example: |
|---|
| 586 | plotter.set_colors("red green blue") |
|---|
| 587 | # If for example four lines are overlaid e.g I Q U V |
|---|
| 588 | # 'I' will be 'red', 'Q' will be 'green', U will be 'blue' |
|---|
| 589 | # and 'V' will be 'red' again. |
|---|
| 590 | """ |
|---|
| 591 | if isinstance(colmap,str): |
|---|
| 592 | colmap = colmap.split() |
|---|
| 593 | self._plotter.palette(0, colormap=colmap) |
|---|
| 594 | if refresh and self._data: self.plot(self._data) |
|---|
| 595 | |
|---|
| 596 | # alias for english speakers |
|---|
| 597 | set_colours = set_colors |
|---|
| 598 | |
|---|
| 599 | def set_histogram(self, hist=True, linewidth=None, refresh=True): |
|---|
| 600 | """ |
|---|
| 601 | Enable/Disable histogram-like plotting. |
|---|
| 602 | Parameters: |
|---|
| 603 | hist: True (default) or False. The fisrt default |
|---|
| 604 | is taken from the .asaprc setting |
|---|
| 605 | plotter.histogram |
|---|
| 606 | refresh: True (default) or False. If True, the plot is |
|---|
| 607 | replotted based on the new parameter setting(s). |
|---|
| 608 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 609 | """ |
|---|
| 610 | self._hist = hist |
|---|
| 611 | if isinstance(linewidth, float) or isinstance(linewidth, int): |
|---|
| 612 | from matplotlib import rc as rcp |
|---|
| 613 | rcp('lines', linewidth=linewidth) |
|---|
| 614 | if refresh and self._data: self.plot(self._data) |
|---|
| 615 | |
|---|
| 616 | def set_linestyles(self, linestyles=None, linewidth=None, refresh=True): |
|---|
| 617 | """ |
|---|
| 618 | Set the linestyles to be used. The plotter will cycle through |
|---|
| 619 | these linestyles when lines are overlaid (stacking mode) AND |
|---|
| 620 | only one color has been set. |
|---|
| 621 | Parameters: |
|---|
| 622 | linestyles: a list of linestyles to use. |
|---|
| 623 | 'line', 'dashed', 'dotted', 'dashdot', |
|---|
| 624 | 'dashdotdot' and 'dashdashdot' are |
|---|
| 625 | possible |
|---|
| 626 | refresh: True (default) or False. If True, the plot is |
|---|
| 627 | replotted based on the new parameter setting(s). |
|---|
| 628 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 629 | Example: |
|---|
| 630 | plotter.set_colors("black") |
|---|
| 631 | plotter.set_linestyles("line dashed dotted dashdot") |
|---|
| 632 | # If for example four lines are overlaid e.g I Q U V |
|---|
| 633 | # 'I' will be 'solid', 'Q' will be 'dashed', |
|---|
| 634 | # U will be 'dotted' and 'V' will be 'dashdot'. |
|---|
| 635 | """ |
|---|
| 636 | if isinstance(linestyles,str): |
|---|
| 637 | linestyles = linestyles.split() |
|---|
| 638 | self._plotter.palette(color=0,linestyle=0,linestyles=linestyles) |
|---|
| 639 | if isinstance(linewidth, float) or isinstance(linewidth, int): |
|---|
| 640 | from matplotlib import rc as rcp |
|---|
| 641 | rcp('lines', linewidth=linewidth) |
|---|
| 642 | if refresh and self._data: self.plot(self._data) |
|---|
| 643 | |
|---|
| 644 | def set_font(self, refresh=True,**kwargs): |
|---|
| 645 | """ |
|---|
| 646 | Set font properties. |
|---|
| 647 | Parameters: |
|---|
| 648 | family: one of 'sans-serif', 'serif', 'cursive', 'fantasy', 'monospace' |
|---|
| 649 | style: one of 'normal' (or 'roman'), 'italic' or 'oblique' |
|---|
| 650 | weight: one of 'normal or 'bold' |
|---|
| 651 | size: the 'general' font size, individual elements can be adjusted |
|---|
| 652 | seperately |
|---|
| 653 | refresh: True (default) or False. If True, the plot is |
|---|
| 654 | replotted based on the new parameter setting(s). |
|---|
| 655 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 656 | """ |
|---|
| 657 | from matplotlib import rc as rcp |
|---|
| 658 | fdict = {} |
|---|
| 659 | for k,v in kwargs.iteritems(): |
|---|
| 660 | if v: |
|---|
| 661 | fdict[k] = v |
|---|
| 662 | self._fp = FontProperties(**fdict) |
|---|
| 663 | if refresh and self._data: self.plot(self._data) |
|---|
| 664 | |
|---|
| 665 | def set_margin(self,margin=[],refresh=True): |
|---|
| 666 | """ |
|---|
| 667 | Set margins between subplots and plot edges. |
|---|
| 668 | Parameters: |
|---|
| 669 | margin: a list of margins in figure coordinate (0-1), |
|---|
| 670 | i.e., fraction of the figure width or height. |
|---|
| 671 | The order of elements should be: |
|---|
| 672 | [left, bottom, right, top, horizontal space btw panels, |
|---|
| 673 | vertical space btw panels]. |
|---|
| 674 | refresh: True (default) or False. If True, the plot is |
|---|
| 675 | replotted based on the new parameter setting(s). |
|---|
| 676 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 677 | Note |
|---|
| 678 | * When margin is not specified, the values are reset to the defaults |
|---|
| 679 | of matplotlib. |
|---|
| 680 | * If any element is set to be None, the current value is adopted. |
|---|
| 681 | """ |
|---|
| 682 | if margin == []: self._margins=self._reset_margin() |
|---|
| 683 | else: |
|---|
| 684 | self._margins=[None]*6 |
|---|
| 685 | self._margins[0:len(margin)]=margin |
|---|
| 686 | #print "panel margin set to ",self._margins |
|---|
| 687 | if refresh and self._data: self.plot(self._data) |
|---|
| 688 | |
|---|
| 689 | def _reset_margin(self): |
|---|
| 690 | ks=map(lambda x: 'figure.subplot.'+x, |
|---|
| 691 | ['left','bottom','right','top','hspace','wspace']) |
|---|
| 692 | return map(matplotlib.rcParams.get,ks) |
|---|
| 693 | |
|---|
| 694 | def plot_lines(self, linecat=None, doppler=0.0, deltachan=10, rotate=90.0, |
|---|
| 695 | location=None): |
|---|
| 696 | """ |
|---|
| 697 | Plot a line catalog. |
|---|
| 698 | Parameters: |
|---|
| 699 | linecat: the linecatalog to plot |
|---|
| 700 | doppler: the velocity shift to apply to the frequencies |
|---|
| 701 | deltachan: the number of channels to include each side of the |
|---|
| 702 | line to determine a local maximum/minimum |
|---|
| 703 | rotate: the rotation (in degrees) for the text label (default 90.0) |
|---|
| 704 | location: the location of the line annotation from the 'top', |
|---|
| 705 | 'bottom' or alternate (None - the default) |
|---|
| 706 | Notes: |
|---|
| 707 | If the spectrum is flagged no line will be drawn in that location. |
|---|
| 708 | """ |
|---|
| 709 | if not self._data: |
|---|
| 710 | raise RuntimeError("No scantable has been plotted yet.") |
|---|
| 711 | from asap._asap import linecatalog |
|---|
| 712 | if not isinstance(linecat, linecatalog): |
|---|
| 713 | raise ValueError("'linecat' isn't of type linecatalog.") |
|---|
| 714 | if not self._data.get_unit().endswith("Hz"): |
|---|
| 715 | raise RuntimeError("Can only overlay linecatalogs when data is in frequency.") |
|---|
| 716 | from numpy import ma |
|---|
| 717 | for j in range(len(self._plotter.subplots)): |
|---|
| 718 | self._plotter.subplot(j) |
|---|
| 719 | lims = self._plotter.axes.get_xlim() |
|---|
| 720 | for row in range(linecat.nrow()): |
|---|
| 721 | # get_frequency returns MHz |
|---|
| 722 | base = { "GHz": 1000.0, "MHz": 1.0, "Hz": 1.0e-6 } |
|---|
| 723 | restf = linecat.get_frequency(row)/base[self._data.get_unit()] |
|---|
| 724 | c = 299792.458 |
|---|
| 725 | freq = restf*(1.0-doppler/c) |
|---|
| 726 | if lims[0] < freq < lims[1]: |
|---|
| 727 | if location is None: |
|---|
| 728 | loc = 'bottom' |
|---|
| 729 | if row%2: loc='top' |
|---|
| 730 | else: loc = location |
|---|
| 731 | maxys = [] |
|---|
| 732 | for line in self._plotter.axes.lines: |
|---|
| 733 | v = line._x |
|---|
| 734 | asc = v[0] < v[-1] |
|---|
| 735 | |
|---|
| 736 | idx = None |
|---|
| 737 | if not asc: |
|---|
| 738 | if v[len(v)-1] <= freq <= v[0]: |
|---|
| 739 | i = len(v)-1 |
|---|
| 740 | while i>=0 and v[i] < freq: |
|---|
| 741 | idx = i |
|---|
| 742 | i-=1 |
|---|
| 743 | else: |
|---|
| 744 | if v[0] <= freq <= v[len(v)-1]: |
|---|
| 745 | i = 0 |
|---|
| 746 | while i<len(v) and v[i] < freq: |
|---|
| 747 | idx = i |
|---|
| 748 | i+=1 |
|---|
| 749 | if idx is not None: |
|---|
| 750 | lower = idx - deltachan |
|---|
| 751 | upper = idx + deltachan |
|---|
| 752 | if lower < 0: lower = 0 |
|---|
| 753 | if upper > len(v): upper = len(v) |
|---|
| 754 | s = slice(lower, upper) |
|---|
| 755 | y = line._y[s] |
|---|
| 756 | maxy = ma.maximum(y) |
|---|
| 757 | if isinstance( maxy, float): |
|---|
| 758 | maxys.append(maxy) |
|---|
| 759 | if len(maxys): |
|---|
| 760 | peak = max(maxys) |
|---|
| 761 | if peak > self._plotter.axes.get_ylim()[1]: |
|---|
| 762 | loc = 'bottom' |
|---|
| 763 | else: |
|---|
| 764 | continue |
|---|
| 765 | self._plotter.vline_with_label(freq, peak, |
|---|
| 766 | linecat.get_name(row), |
|---|
| 767 | location=loc, rotate=rotate) |
|---|
| 768 | self._plotter.show(hardrefresh=False) |
|---|
| 769 | |
|---|
| 770 | |
|---|
| 771 | def save(self, filename=None, orientation=None, dpi=None): |
|---|
| 772 | """ |
|---|
| 773 | Save the plot to a file. The known formats are 'png', 'ps', 'eps'. |
|---|
| 774 | Parameters: |
|---|
| 775 | filename: The name of the output file. This is optional |
|---|
| 776 | and autodetects the image format from the file |
|---|
| 777 | suffix. If non filename is specified a file |
|---|
| 778 | called 'yyyymmdd_hhmmss.png' is created in the |
|---|
| 779 | current directory. |
|---|
| 780 | orientation: optional parameter for postscript only (not eps). |
|---|
| 781 | 'landscape', 'portrait' or None (default) are valid. |
|---|
| 782 | If None is choosen for 'ps' output, the plot is |
|---|
| 783 | automatically oriented to fill the page. |
|---|
| 784 | dpi: The dpi of the output non-ps plot |
|---|
| 785 | """ |
|---|
| 786 | self._plotter.save(filename,orientation,dpi) |
|---|
| 787 | return |
|---|
| 788 | |
|---|
| 789 | @asaplog_post_dec |
|---|
| 790 | def set_mask(self, mask=None, selection=None, refresh=True): |
|---|
| 791 | """ |
|---|
| 792 | Set a plotting mask for a specific polarization. |
|---|
| 793 | This is useful for masking out "noise" Pangle outside a source. |
|---|
| 794 | Parameters: |
|---|
| 795 | mask: a mask from scantable.create_mask |
|---|
| 796 | selection: the spectra to apply the mask to. |
|---|
| 797 | refresh: True (default) or False. If True, the plot is |
|---|
| 798 | replotted based on the new parameter setting(s). |
|---|
| 799 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 800 | Example: |
|---|
| 801 | select = selector() |
|---|
| 802 | select.setpolstrings("Pangle") |
|---|
| 803 | plotter.set_mask(mymask, select) |
|---|
| 804 | """ |
|---|
| 805 | if not self._data: |
|---|
| 806 | msg = "Can only set mask after a first call to plot()" |
|---|
| 807 | raise RuntimeError(msg) |
|---|
| 808 | if len(mask): |
|---|
| 809 | if isinstance(mask, list) or isinstance(mask, tuple): |
|---|
| 810 | self._usermask = array(mask) |
|---|
| 811 | else: |
|---|
| 812 | self._usermask = mask |
|---|
| 813 | if mask is None and selection is None: |
|---|
| 814 | self._usermask = [] |
|---|
| 815 | self._maskselection = None |
|---|
| 816 | if isinstance(selection, selector): |
|---|
| 817 | self._maskselection = {'b': selection.get_beams(), |
|---|
| 818 | 's': selection.get_scans(), |
|---|
| 819 | 'i': selection.get_ifs(), |
|---|
| 820 | 'p': selection.get_pols(), |
|---|
| 821 | 't': [] } |
|---|
| 822 | else: |
|---|
| 823 | self._maskselection = None |
|---|
| 824 | if refresh: self.plot(self._data) |
|---|
| 825 | |
|---|
| 826 | def _slice_indeces(self, data): |
|---|
| 827 | mn = self._minmaxx[0] |
|---|
| 828 | mx = self._minmaxx[1] |
|---|
| 829 | asc = data[0] < data[-1] |
|---|
| 830 | start=0 |
|---|
| 831 | end = len(data)-1 |
|---|
| 832 | inc = 1 |
|---|
| 833 | if not asc: |
|---|
| 834 | start = len(data)-1 |
|---|
| 835 | end = 0 |
|---|
| 836 | inc = -1 |
|---|
| 837 | # find min index |
|---|
| 838 | #while start > 0 and data[start] < mn: |
|---|
| 839 | # start+= inc |
|---|
| 840 | minind=start |
|---|
| 841 | for ind in xrange(start,end+inc,inc): |
|---|
| 842 | if data[ind] > mn: break |
|---|
| 843 | minind=ind |
|---|
| 844 | # find max index |
|---|
| 845 | #while end > 0 and data[end] > mx: |
|---|
| 846 | # end-=inc |
|---|
| 847 | #if end > 0: end +=1 |
|---|
| 848 | maxind=end |
|---|
| 849 | for ind in xrange(end,start-inc,-inc): |
|---|
| 850 | if data[ind] < mx: break |
|---|
| 851 | maxind=ind |
|---|
| 852 | start=minind |
|---|
| 853 | end=maxind |
|---|
| 854 | if start > end: |
|---|
| 855 | return end,start+1 |
|---|
| 856 | elif start < end: |
|---|
| 857 | return start,end+1 |
|---|
| 858 | else: |
|---|
| 859 | return start,end |
|---|
| 860 | |
|---|
| 861 | def _reset(self): |
|---|
| 862 | self._usermask = [] |
|---|
| 863 | self._usermaskspectra = None |
|---|
| 864 | self._offset = None |
|---|
| 865 | self.set_selection(None, False) |
|---|
| 866 | self._reset_header() |
|---|
| 867 | |
|---|
| 868 | def _reset_header(self): |
|---|
| 869 | self._headtext={'string': None, 'textobj': None} |
|---|
| 870 | |
|---|
| 871 | def _plot(self, scan): |
|---|
| 872 | savesel = scan.get_selection() |
|---|
| 873 | sel = savesel + self._selection |
|---|
| 874 | order = self._get_sortstring([self._panelling,self._stacking]) |
|---|
| 875 | if order: |
|---|
| 876 | sel.set_order(order) |
|---|
| 877 | scan.set_selection(sel) |
|---|
| 878 | d = {'b': scan.getbeam, 's': scan.getscan, |
|---|
| 879 | 'i': scan.getif, 'p': scan.getpol, 't': scan.get_time, |
|---|
| 880 | 'r': int}#, '_r': int} |
|---|
| 881 | |
|---|
| 882 | polmodes = dict(zip(self._selection.get_pols(), |
|---|
| 883 | self._selection.get_poltypes())) |
|---|
| 884 | # this returns either a tuple of numbers or a length (ncycles) |
|---|
| 885 | # convert this into lengths |
|---|
| 886 | n0,nstack0 = self._get_selected_n(scan) |
|---|
| 887 | if isinstance(n0, int): n = n0 |
|---|
| 888 | else: n = len(n0) |
|---|
| 889 | if isinstance(nstack0, int): nstack = nstack0 |
|---|
| 890 | else: nstack = len(nstack0) |
|---|
| 891 | # In case of row stacking |
|---|
| 892 | rowstack = False |
|---|
| 893 | titlemode = self._panelling |
|---|
| 894 | if self._stacking == "r" and self._panelling != "r": |
|---|
| 895 | rowstack = True |
|---|
| 896 | titlemode = '_r' |
|---|
| 897 | nptot = n |
|---|
| 898 | maxpanel, maxstack = 16,16 |
|---|
| 899 | if nstack > maxstack: |
|---|
| 900 | msg ="Scan to be overlayed contains more than %d selections.\n" \ |
|---|
| 901 | "Selecting first %d selections..." % (maxstack, maxstack) |
|---|
| 902 | asaplog.push(msg) |
|---|
| 903 | asaplog.post('WARN') |
|---|
| 904 | nstack = min(nstack,maxstack) |
|---|
| 905 | #n = min(n-self._ipanel-1,maxpanel) |
|---|
| 906 | n = n-self._ipanel-1 |
|---|
| 907 | |
|---|
| 908 | ganged = False |
|---|
| 909 | if n > 1: |
|---|
| 910 | ganged = rcParams['plotter.ganged'] |
|---|
| 911 | if self._panelling == 'i': |
|---|
| 912 | ganged = False |
|---|
| 913 | if self._rows and self._cols: |
|---|
| 914 | n = min(n,self._rows*self._cols) |
|---|
| 915 | self._plotter.set_panels(rows=self._rows,cols=self._cols, |
|---|
| 916 | nplots=n,margin=self._margins, |
|---|
| 917 | ganged=ganged) |
|---|
| 918 | else: |
|---|
| 919 | n = min(n,maxpanel) |
|---|
| 920 | self._plotter.set_panels(rows=n,cols=0,nplots=n, |
|---|
| 921 | margin=self._margins,ganged=ganged) |
|---|
| 922 | else: |
|---|
| 923 | self._plotter.set_panels(margin=self._margins) |
|---|
| 924 | #r = 0 |
|---|
| 925 | r = self._startrow |
|---|
| 926 | nr = scan.nrow() |
|---|
| 927 | a0,b0 = -1,-1 |
|---|
| 928 | allxlim = [] |
|---|
| 929 | allylim = [] |
|---|
| 930 | #newpanel=True |
|---|
| 931 | newpanel=False |
|---|
| 932 | panelcount,stackcount = 0,0 |
|---|
| 933 | # If this is not the first page |
|---|
| 934 | if r > 0: |
|---|
| 935 | # panelling value of the prev page |
|---|
| 936 | a0 = d[self._panelling](r-1) |
|---|
| 937 | # set the initial stackcount large not to plot |
|---|
| 938 | # the start row automatically |
|---|
| 939 | stackcount = nstack |
|---|
| 940 | |
|---|
| 941 | while r < nr: |
|---|
| 942 | a = d[self._panelling](r) |
|---|
| 943 | b = d[self._stacking](r) |
|---|
| 944 | if a > a0 and panelcount < n: |
|---|
| 945 | if n > 1: |
|---|
| 946 | self._plotter.subplot(panelcount) |
|---|
| 947 | self._plotter.palette(0) |
|---|
| 948 | #title |
|---|
| 949 | xlab = self._abcissa and self._abcissa[panelcount] \ |
|---|
| 950 | or scan._getabcissalabel() |
|---|
| 951 | if self._offset and not self._abcissa: |
|---|
| 952 | xlab += " (relative)" |
|---|
| 953 | ylab = self._ordinate and self._ordinate[panelcount] \ |
|---|
| 954 | or scan._get_ordinate_label() |
|---|
| 955 | self._plotter.set_axes('xlabel', xlab) |
|---|
| 956 | self._plotter.set_axes('ylabel', ylab) |
|---|
| 957 | #lbl = self._get_label(scan, r, self._panelling, self._title) |
|---|
| 958 | lbl = self._get_label(scan, r, titlemode, self._title) |
|---|
| 959 | if isinstance(lbl, list) or isinstance(lbl, tuple): |
|---|
| 960 | if 0 <= panelcount < len(lbl): |
|---|
| 961 | lbl = lbl[panelcount] |
|---|
| 962 | else: |
|---|
| 963 | # get default label |
|---|
| 964 | #lbl = self._get_label(scan, r, self._panelling, None) |
|---|
| 965 | lbl = self._get_label(scan, r, titlemode, None) |
|---|
| 966 | self._plotter.set_axes('title',lbl) |
|---|
| 967 | newpanel = True |
|---|
| 968 | stackcount = 0 |
|---|
| 969 | panelcount += 1 |
|---|
| 970 | # save the start row to plot this panel for future revisit. |
|---|
| 971 | if self._panelling != 'r' and \ |
|---|
| 972 | len(self._panelrows) < self._ipanel+1+panelcount: |
|---|
| 973 | self._panelrows += [r] |
|---|
| 974 | |
|---|
| 975 | #if (b > b0 or newpanel) and stackcount < nstack: |
|---|
| 976 | if stackcount < nstack and (newpanel or rowstack |
|---|
| 977 | or (a == a0 and b > b0)): |
|---|
| 978 | y = [] |
|---|
| 979 | if len(polmodes): |
|---|
| 980 | y = scan._getspectrum(r, polmodes[scan.getpol(r)]) |
|---|
| 981 | else: |
|---|
| 982 | y = scan._getspectrum(r) |
|---|
| 983 | # flag application |
|---|
| 984 | mr = scan._getflagrow(r) |
|---|
| 985 | #mr = False |
|---|
| 986 | from numpy import ma, array |
|---|
| 987 | if mr: |
|---|
| 988 | y = ma.masked_array(y,mask=mr) |
|---|
| 989 | else: |
|---|
| 990 | m = scan._getmask(r) |
|---|
| 991 | from numpy import logical_not, logical_and |
|---|
| 992 | if self._maskselection and len(self._usermask) == len(m): |
|---|
| 993 | if d[self._stacking](r) in \ |
|---|
| 994 | self._maskselection[self._stacking]: |
|---|
| 995 | m = logical_and(m, self._usermask) |
|---|
| 996 | y = ma.masked_array(y,mask=logical_not(array(m, |
|---|
| 997 | copy=False))) |
|---|
| 998 | |
|---|
| 999 | x = array(scan._getabcissa(r)) |
|---|
| 1000 | if self._offset: |
|---|
| 1001 | x += self._offset |
|---|
| 1002 | if self._minmaxx is not None: |
|---|
| 1003 | s,e = self._slice_indeces(x) |
|---|
| 1004 | x = x[s:e] |
|---|
| 1005 | y = y[s:e] |
|---|
| 1006 | if len(x) > 1024 and rcParams['plotter.decimate']: |
|---|
| 1007 | fac = len(x)/1024 |
|---|
| 1008 | x = x[::fac] |
|---|
| 1009 | y = y[::fac] |
|---|
| 1010 | llbl = self._get_label(scan, r, self._stacking, self._lmap) |
|---|
| 1011 | if isinstance(llbl, list) or isinstance(llbl, tuple): |
|---|
| 1012 | if 0 <= stackcount < len(llbl): |
|---|
| 1013 | # use user label |
|---|
| 1014 | llbl = llbl[stackcount] |
|---|
| 1015 | else: |
|---|
| 1016 | # get default label |
|---|
| 1017 | llbl = self._get_label(scan, r, self._stacking, None) |
|---|
| 1018 | self._plotter.set_line(label=llbl) |
|---|
| 1019 | plotit = self._plotter.plot |
|---|
| 1020 | if self._hist: plotit = self._plotter.hist |
|---|
| 1021 | if len(x) > 0 and not mr: |
|---|
| 1022 | plotit(x,y) |
|---|
| 1023 | xlim= self._minmaxx or [min(x),max(x)] |
|---|
| 1024 | allxlim += xlim |
|---|
| 1025 | ylim= self._minmaxy or [ma.minimum(y),ma.maximum(y)] |
|---|
| 1026 | allylim += ylim |
|---|
| 1027 | else: |
|---|
| 1028 | xlim = self._minmaxx or [] |
|---|
| 1029 | allxlim += xlim |
|---|
| 1030 | ylim= self._minmaxy or [] |
|---|
| 1031 | allylim += ylim |
|---|
| 1032 | stackcount += 1 |
|---|
| 1033 | a0=a |
|---|
| 1034 | b0=b |
|---|
| 1035 | # last in colour stack -> autoscale x |
|---|
| 1036 | if stackcount == nstack and len(allxlim) > 0: |
|---|
| 1037 | allxlim.sort() |
|---|
| 1038 | self._plotter.subplots[panelcount-1]['axes'].set_xlim([allxlim[0],allxlim[-1]]) |
|---|
| 1039 | if ganged: |
|---|
| 1040 | allxlim = [allxlim[0],allxlim[-1]] |
|---|
| 1041 | else: |
|---|
| 1042 | # clear |
|---|
| 1043 | allxlim =[] |
|---|
| 1044 | |
|---|
| 1045 | newpanel = False |
|---|
| 1046 | #a0=a |
|---|
| 1047 | #b0=b |
|---|
| 1048 | # ignore following rows |
|---|
| 1049 | if (panelcount == n and stackcount == nstack) or (r == nr-1): |
|---|
| 1050 | # last panel -> autoscale y if ganged |
|---|
| 1051 | #if rcParams['plotter.ganged'] and len(allylim) > 0: |
|---|
| 1052 | if ganged and len(allylim) > 0: |
|---|
| 1053 | allylim.sort() |
|---|
| 1054 | self._plotter.set_limits(ylim=[allylim[0],allylim[-1]]) |
|---|
| 1055 | break |
|---|
| 1056 | r+=1 # next row |
|---|
| 1057 | |
|---|
| 1058 | # save the current counter for multi-page plotting |
|---|
| 1059 | self._startrow = r+1 |
|---|
| 1060 | self._ipanel += panelcount |
|---|
| 1061 | if self.casabar_exists(): |
|---|
| 1062 | if self._ipanel >= nptot-1: |
|---|
| 1063 | self._plotter.figmgr.casabar.disable_next() |
|---|
| 1064 | else: |
|---|
| 1065 | self._plotter.figmgr.casabar.enable_next() |
|---|
| 1066 | if self._ipanel + 1 - panelcount > 0: |
|---|
| 1067 | self._plotter.figmgr.casabar.enable_prev() |
|---|
| 1068 | else: |
|---|
| 1069 | self._plotter.figmgr.casabar.disable_prev() |
|---|
| 1070 | |
|---|
| 1071 | #reset the selector to the scantable's original |
|---|
| 1072 | scan.set_selection(savesel) |
|---|
| 1073 | |
|---|
| 1074 | #temporary switch-off for older matplotlib |
|---|
| 1075 | #if self._fp is not None: |
|---|
| 1076 | if self._fp is not None and getattr(self._plotter.figure,'findobj',False): |
|---|
| 1077 | for o in self._plotter.figure.findobj(Text): |
|---|
| 1078 | o.set_fontproperties(self._fp) |
|---|
| 1079 | |
|---|
| 1080 | def _get_sortstring(self, lorders): |
|---|
| 1081 | d0 = {'s': 'SCANNO', 'b': 'BEAMNO', 'i':'IFNO', |
|---|
| 1082 | 'p': 'POLNO', 'c': 'CYCLENO', 't' : 'TIME', 'r':None, '_r':None } |
|---|
| 1083 | if not (type(lorders) == list) and not (type(lorders) == tuple): |
|---|
| 1084 | return None |
|---|
| 1085 | if len(lorders) > 0: |
|---|
| 1086 | lsorts = [] |
|---|
| 1087 | for order in lorders: |
|---|
| 1088 | if order == "r": |
|---|
| 1089 | # don't sort if row panelling/stacking |
|---|
| 1090 | return None |
|---|
| 1091 | ssort = d0[order] |
|---|
| 1092 | if ssort: |
|---|
| 1093 | lsorts.append(ssort) |
|---|
| 1094 | return lsorts |
|---|
| 1095 | return None |
|---|
| 1096 | |
|---|
| 1097 | def set_selection(self, selection=None, refresh=True, **kw): |
|---|
| 1098 | """ |
|---|
| 1099 | Parameters: |
|---|
| 1100 | selection: a selector object (default unset the selection) |
|---|
| 1101 | refresh: True (default) or False. If True, the plot is |
|---|
| 1102 | replotted based on the new parameter setting(s). |
|---|
| 1103 | Otherwise,the parameter(s) are set without replotting. |
|---|
| 1104 | """ |
|---|
| 1105 | if selection is None: |
|---|
| 1106 | # reset |
|---|
| 1107 | if len(kw) == 0: |
|---|
| 1108 | self._selection = selector() |
|---|
| 1109 | else: |
|---|
| 1110 | # try keywords |
|---|
| 1111 | for k in kw: |
|---|
| 1112 | if k not in selector.fields: |
|---|
| 1113 | raise KeyError("Invalid selection key '%s', valid keys are %s" % (k, selector.fields)) |
|---|
| 1114 | self._selection = selector(**kw) |
|---|
| 1115 | elif isinstance(selection, selector): |
|---|
| 1116 | self._selection = selection |
|---|
| 1117 | else: |
|---|
| 1118 | raise TypeError("'selection' is not of type selector") |
|---|
| 1119 | |
|---|
| 1120 | order = self._get_sortstring([self._panelling,self._stacking]) |
|---|
| 1121 | if order: |
|---|
| 1122 | self._selection.set_order(order) |
|---|
| 1123 | if refresh and self._data: self.plot(self._data) |
|---|
| 1124 | |
|---|
| 1125 | def _get_selected_n(self, scan): |
|---|
| 1126 | d1 = {'b': scan.getbeamnos, 's': scan.getscannos, |
|---|
| 1127 | 'i': scan.getifnos, 'p': scan.getpolnos, 't': scan.ncycle, |
|---|
| 1128 | 'r': scan.nrow}#, '_r': False} |
|---|
| 1129 | d2 = { 'b': self._selection.get_beams(), |
|---|
| 1130 | 's': self._selection.get_scans(), |
|---|
| 1131 | 'i': self._selection.get_ifs(), |
|---|
| 1132 | 'p': self._selection.get_pols(), |
|---|
| 1133 | 't': self._selection.get_cycles(), |
|---|
| 1134 | 'r': False}#, '_r': 1} |
|---|
| 1135 | n = d2[self._panelling] or d1[self._panelling]() |
|---|
| 1136 | nstack = d2[self._stacking] or d1[self._stacking]() |
|---|
| 1137 | # handle row panelling/stacking |
|---|
| 1138 | if self._panelling == 'r': |
|---|
| 1139 | nstack = 1 |
|---|
| 1140 | elif self._stacking == 'r': |
|---|
| 1141 | n = 1 |
|---|
| 1142 | return n,nstack |
|---|
| 1143 | |
|---|
| 1144 | def _get_label(self, scan, row, mode, userlabel=None): |
|---|
| 1145 | if isinstance(userlabel, list) and len(userlabel) == 0: |
|---|
| 1146 | userlabel = " " |
|---|
| 1147 | pms = dict(zip(self._selection.get_pols(),self._selection.get_poltypes())) |
|---|
| 1148 | if len(pms): |
|---|
| 1149 | poleval = scan._getpollabel(scan.getpol(row),pms[scan.getpol(row)]) |
|---|
| 1150 | else: |
|---|
| 1151 | poleval = scan._getpollabel(scan.getpol(row),scan.poltype()) |
|---|
| 1152 | d = {'b': "Beam "+str(scan.getbeam(row)), |
|---|
| 1153 | #'s': scan._getsourcename(row), |
|---|
| 1154 | 's': "Scan "+str(scan.getscan(row))+\ |
|---|
| 1155 | " ("+str(scan._getsourcename(row))+")", |
|---|
| 1156 | 'i': "IF"+str(scan.getif(row)), |
|---|
| 1157 | 'p': poleval, |
|---|
| 1158 | 't': str(scan.get_time(row)), |
|---|
| 1159 | 'r': "row "+str(row), |
|---|
| 1160 | #'_r': str(scan.get_time(row))+",\nIF"+str(scan.getif(row))+", "+poleval+", Beam"+str(scan.getbeam(row)) } |
|---|
| 1161 | '_r': "" } |
|---|
| 1162 | return userlabel or d[mode] |
|---|
| 1163 | |
|---|
| 1164 | def plotazel(self, scan=None, outfile=None): |
|---|
| 1165 | """ |
|---|
| 1166 | plot azimuth and elevation versus time of a scantable |
|---|
| 1167 | """ |
|---|
| 1168 | visible = rcParams['plotter.gui'] |
|---|
| 1169 | from matplotlib import pylab as PL |
|---|
| 1170 | from matplotlib.dates import DateFormatter, timezone |
|---|
| 1171 | from matplotlib.dates import HourLocator, MinuteLocator,SecondLocator, DayLocator |
|---|
| 1172 | from matplotlib.ticker import MultipleLocator |
|---|
| 1173 | from numpy import array, pi |
|---|
| 1174 | if not visible or not self._visible: |
|---|
| 1175 | PL.ioff() |
|---|
| 1176 | from matplotlib.backends.backend_agg import FigureCanvasAgg |
|---|
| 1177 | PL.gcf().canvas.switch_backends(FigureCanvasAgg) |
|---|
| 1178 | self._data = scan |
|---|
| 1179 | self._outfile = outfile |
|---|
| 1180 | dates = self._data.get_time(asdatetime=True) |
|---|
| 1181 | t = PL.date2num(dates) |
|---|
| 1182 | tz = timezone('UTC') |
|---|
| 1183 | PL.cla() |
|---|
| 1184 | PL.ioff() |
|---|
| 1185 | PL.clf() |
|---|
| 1186 | # Adjust subplot margins |
|---|
| 1187 | if len(self._margins) != 6: |
|---|
| 1188 | self.set_margin(refresh=False) |
|---|
| 1189 | lef, bot, rig, top, wsp, hsp = self._margins |
|---|
| 1190 | PL.gcf().subplots_adjust(left=lef,bottom=bot,right=rig,top=top, |
|---|
| 1191 | wspace=wsp,hspace=hsp) |
|---|
| 1192 | |
|---|
| 1193 | tdel = max(t) - min(t) |
|---|
| 1194 | ax = PL.subplot(2,1,1) |
|---|
| 1195 | el = array(self._data.get_elevation())*180./pi |
|---|
| 1196 | PL.ylabel('El [deg.]') |
|---|
| 1197 | dstr = dates[0].strftime('%Y/%m/%d') |
|---|
| 1198 | if tdel > 1.0: |
|---|
| 1199 | dstr2 = dates[len(dates)-1].strftime('%Y/%m/%d') |
|---|
| 1200 | dstr = dstr + " - " + dstr2 |
|---|
| 1201 | majloc = DayLocator() |
|---|
| 1202 | minloc = HourLocator(range(0,23,12)) |
|---|
| 1203 | timefmt = DateFormatter("%b%d") |
|---|
| 1204 | elif tdel > 24./60.: |
|---|
| 1205 | timefmt = DateFormatter('%H:%M') |
|---|
| 1206 | majloc = HourLocator() |
|---|
| 1207 | minloc = MinuteLocator(30) |
|---|
| 1208 | else: |
|---|
| 1209 | timefmt = DateFormatter('%H:%M') |
|---|
| 1210 | majloc = MinuteLocator(interval=5) |
|---|
| 1211 | minloc = SecondLocator(30) |
|---|
| 1212 | |
|---|
| 1213 | PL.title(dstr) |
|---|
| 1214 | if tdel == 0.0: |
|---|
| 1215 | th = (t - PL.floor(t))*24.0 |
|---|
| 1216 | PL.plot(th,el,'o',markersize=2, markerfacecolor='b', markeredgecolor='b') |
|---|
| 1217 | else: |
|---|
| 1218 | PL.plot_date(t,el,'o', markersize=2, markerfacecolor='b', markeredgecolor='b',tz=tz) |
|---|
| 1219 | #ax.grid(True) |
|---|
| 1220 | ax.xaxis.set_major_formatter(timefmt) |
|---|
| 1221 | ax.xaxis.set_major_locator(majloc) |
|---|
| 1222 | ax.xaxis.set_minor_locator(minloc) |
|---|
| 1223 | ax.yaxis.grid(True) |
|---|
| 1224 | yloc = MultipleLocator(30) |
|---|
| 1225 | ax.set_ylim(0,90) |
|---|
| 1226 | ax.yaxis.set_major_locator(yloc) |
|---|
| 1227 | if tdel > 1.0: |
|---|
| 1228 | labels = ax.get_xticklabels() |
|---|
| 1229 | # PL.setp(labels, fontsize=10, rotation=45) |
|---|
| 1230 | PL.setp(labels, fontsize=10) |
|---|
| 1231 | |
|---|
| 1232 | # Az plot |
|---|
| 1233 | az = array(self._data.get_azimuth())*180./pi |
|---|
| 1234 | if min(az) < 0: |
|---|
| 1235 | for irow in range(len(az)): |
|---|
| 1236 | if az[irow] < 0: az[irow] += 360.0 |
|---|
| 1237 | |
|---|
| 1238 | ax2 = PL.subplot(2,1,2) |
|---|
| 1239 | #PL.xlabel('Time (UT [hour])') |
|---|
| 1240 | PL.ylabel('Az [deg.]') |
|---|
| 1241 | if tdel == 0.0: |
|---|
| 1242 | PL.plot(th,az,'o',markersize=2, markeredgecolor='b',markerfacecolor='b') |
|---|
| 1243 | else: |
|---|
| 1244 | PL.plot_date(t,az,'o', markersize=2,markeredgecolor='b',markerfacecolor='b',tz=tz) |
|---|
| 1245 | ax2.xaxis.set_major_formatter(timefmt) |
|---|
| 1246 | ax2.xaxis.set_major_locator(majloc) |
|---|
| 1247 | ax2.xaxis.set_minor_locator(minloc) |
|---|
| 1248 | #ax2.grid(True) |
|---|
| 1249 | ax2.set_ylim(0,360) |
|---|
| 1250 | ax2.yaxis.grid(True) |
|---|
| 1251 | #hfmt = DateFormatter('%H') |
|---|
| 1252 | #hloc = HourLocator() |
|---|
| 1253 | yloc = MultipleLocator(60) |
|---|
| 1254 | ax2.yaxis.set_major_locator(yloc) |
|---|
| 1255 | if tdel > 1.0: |
|---|
| 1256 | labels = ax2.get_xticklabels() |
|---|
| 1257 | PL.setp(labels, fontsize=10) |
|---|
| 1258 | PL.xlabel('Time (UT [day])') |
|---|
| 1259 | else: |
|---|
| 1260 | PL.xlabel('Time (UT [hour])') |
|---|
| 1261 | |
|---|
| 1262 | PL.ion() |
|---|
| 1263 | PL.draw() |
|---|
| 1264 | PL.gcf().show() |
|---|
| 1265 | if (self._outfile is not None): |
|---|
| 1266 | PL.savefig(self._outfile) |
|---|
| 1267 | |
|---|
| 1268 | def plotpointing(self, scan=None, outfile=None): |
|---|
| 1269 | """ |
|---|
| 1270 | plot telescope pointings |
|---|
| 1271 | """ |
|---|
| 1272 | visible = rcParams['plotter.gui'] |
|---|
| 1273 | from matplotlib import pylab as PL |
|---|
| 1274 | from numpy import array, pi |
|---|
| 1275 | if not visible or not self._visible: |
|---|
| 1276 | PL.ioff() |
|---|
| 1277 | from matplotlib.backends.backend_agg import FigureCanvasAgg |
|---|
| 1278 | PL.gcf().canvas.switch_backends(FigureCanvasAgg) |
|---|
| 1279 | self._data = scan |
|---|
| 1280 | self._outfile = outfile |
|---|
| 1281 | dir = array(self._data.get_directionval()).transpose() |
|---|
| 1282 | ra = dir[0]*180./pi |
|---|
| 1283 | dec = dir[1]*180./pi |
|---|
| 1284 | PL.cla() |
|---|
| 1285 | #PL.ioff() |
|---|
| 1286 | PL.clf() |
|---|
| 1287 | # Adjust subplot margins |
|---|
| 1288 | if len(self._margins) != 6: |
|---|
| 1289 | self.set_margin(refresh=False) |
|---|
| 1290 | lef, bot, rig, top, wsp, hsp = self._margins |
|---|
| 1291 | PL.gcf().subplots_adjust(left=lef,bottom=bot,right=rig,top=top, |
|---|
| 1292 | wspace=wsp,hspace=hsp) |
|---|
| 1293 | ax = PL.gca() |
|---|
| 1294 | #ax = PL.axes([0.1,0.1,0.8,0.8]) |
|---|
| 1295 | #ax = PL.axes([0.1,0.1,0.8,0.8]) |
|---|
| 1296 | ax.set_aspect('equal') |
|---|
| 1297 | PL.plot(ra, dec, 'b,') |
|---|
| 1298 | PL.xlabel('RA [deg.]') |
|---|
| 1299 | PL.ylabel('Declination [deg.]') |
|---|
| 1300 | PL.title('Telescope pointings') |
|---|
| 1301 | [xmin,xmax,ymin,ymax] = PL.axis() |
|---|
| 1302 | PL.axis([xmax,xmin,ymin,ymax]) |
|---|
| 1303 | #PL.ion() |
|---|
| 1304 | PL.draw() |
|---|
| 1305 | PL.gcf().show() |
|---|
| 1306 | if (self._outfile is not None): |
|---|
| 1307 | PL.savefig(self._outfile) |
|---|
| 1308 | |
|---|
| 1309 | # plot total power data |
|---|
| 1310 | # plotting in time is not yet implemented.. |
|---|
| 1311 | @asaplog_post_dec |
|---|
| 1312 | def plottp(self, scan=None, outfile=None): |
|---|
| 1313 | if self._plotter.is_dead: |
|---|
| 1314 | if self.casabar_exists(): |
|---|
| 1315 | del self._plotter.figmgr.casabar |
|---|
| 1316 | self._plotter = self._newplotter() |
|---|
| 1317 | self._plotter.figmgr.casabar=self._new_custombar() |
|---|
| 1318 | self._plotter.hold() |
|---|
| 1319 | self._plotter.clear() |
|---|
| 1320 | from asap import scantable |
|---|
| 1321 | if not self._data and not scan: |
|---|
| 1322 | msg = "Input is not a scantable" |
|---|
| 1323 | raise TypeError(msg) |
|---|
| 1324 | if isinstance(scan, scantable): |
|---|
| 1325 | if self._data is not None: |
|---|
| 1326 | if scan != self._data: |
|---|
| 1327 | self._data = scan |
|---|
| 1328 | # reset |
|---|
| 1329 | self._reset() |
|---|
| 1330 | else: |
|---|
| 1331 | self._data = scan |
|---|
| 1332 | self._reset() |
|---|
| 1333 | # ranges become invalid when abcissa changes? |
|---|
| 1334 | #if self._abcunit and self._abcunit != self._data.get_unit(): |
|---|
| 1335 | # self._minmaxx = None |
|---|
| 1336 | # self._minmaxy = None |
|---|
| 1337 | # self._abcunit = self._data.get_unit() |
|---|
| 1338 | # self._datamask = None |
|---|
| 1339 | |
|---|
| 1340 | # Adjust subplot margins |
|---|
| 1341 | if len(self._margins) !=6: self.set_margin(refresh=False) |
|---|
| 1342 | lef, bot, rig, top, wsp, hsp = self._margins |
|---|
| 1343 | self._plotter.figure.subplots_adjust( |
|---|
| 1344 | left=lef,bottom=bot,right=rig,top=top,wspace=wsp,hspace=hsp) |
|---|
| 1345 | if self.casabar_exists(): self._plotter.figmgr.casabar.disable_button() |
|---|
| 1346 | self._plottp(self._data) |
|---|
| 1347 | if self._minmaxy is not None: |
|---|
| 1348 | self._plotter.set_limits(ylim=self._minmaxy) |
|---|
| 1349 | self._plotter.release() |
|---|
| 1350 | self._plotter.tidy() |
|---|
| 1351 | self._plotter.show(hardrefresh=False) |
|---|
| 1352 | return |
|---|
| 1353 | |
|---|
| 1354 | def _plottp(self,scan): |
|---|
| 1355 | """ |
|---|
| 1356 | private method for plotting total power data |
|---|
| 1357 | """ |
|---|
| 1358 | from numpy import ma, array, arange, logical_not |
|---|
| 1359 | r=0 |
|---|
| 1360 | nr = scan.nrow() |
|---|
| 1361 | a0,b0 = -1,-1 |
|---|
| 1362 | allxlim = [] |
|---|
| 1363 | allylim = [] |
|---|
| 1364 | y=[] |
|---|
| 1365 | self._plotter.set_panels() |
|---|
| 1366 | self._plotter.palette(0) |
|---|
| 1367 | #title |
|---|
| 1368 | #xlab = self._abcissa and self._abcissa[panelcount] \ |
|---|
| 1369 | # or scan._getabcissalabel() |
|---|
| 1370 | #ylab = self._ordinate and self._ordinate[panelcount] \ |
|---|
| 1371 | # or scan._get_ordinate_label() |
|---|
| 1372 | xlab = self._abcissa or 'row number' #or Time |
|---|
| 1373 | ylab = self._ordinate or scan._get_ordinate_label() |
|---|
| 1374 | self._plotter.set_axes('xlabel',xlab) |
|---|
| 1375 | self._plotter.set_axes('ylabel',ylab) |
|---|
| 1376 | lbl = self._get_label(scan, r, 's', self._title) |
|---|
| 1377 | if isinstance(lbl, list) or isinstance(lbl, tuple): |
|---|
| 1378 | # if 0 <= panelcount < len(lbl): |
|---|
| 1379 | # lbl = lbl[panelcount] |
|---|
| 1380 | # else: |
|---|
| 1381 | # get default label |
|---|
| 1382 | lbl = self._get_label(scan, r, self._panelling, None) |
|---|
| 1383 | self._plotter.set_axes('title',lbl) |
|---|
| 1384 | y=array(scan._get_column(scan._getspectrum,-1)) |
|---|
| 1385 | m = array(scan._get_column(scan._getmask,-1)) |
|---|
| 1386 | y = ma.masked_array(y,mask=logical_not(array(m,copy=False))) |
|---|
| 1387 | x = arange(len(y)) |
|---|
| 1388 | # try to handle spectral data somewhat... |
|---|
| 1389 | l,m = y.shape |
|---|
| 1390 | if m > 1: |
|---|
| 1391 | y=y.mean(axis=1) |
|---|
| 1392 | plotit = self._plotter.plot |
|---|
| 1393 | llbl = self._get_label(scan, r, self._stacking, None) |
|---|
| 1394 | self._plotter.set_line(label=llbl) |
|---|
| 1395 | if len(x) > 0: |
|---|
| 1396 | plotit(x,y) |
|---|
| 1397 | |
|---|
| 1398 | |
|---|
| 1399 | # forwards to matplotlib.Figure.text |
|---|
| 1400 | def figtext(self, *args, **kwargs): |
|---|
| 1401 | """ |
|---|
| 1402 | Add text to figure at location x,y (relative 0-1 coords). |
|---|
| 1403 | This method forwards *args and **kwargs to a Matplotlib method, |
|---|
| 1404 | matplotlib.Figure.text. |
|---|
| 1405 | See the method help for detailed information. |
|---|
| 1406 | """ |
|---|
| 1407 | self._plotter.text(*args, **kwargs) |
|---|
| 1408 | # end matplotlib.Figure.text forwarding function |
|---|
| 1409 | |
|---|
| 1410 | |
|---|
| 1411 | # printing header information |
|---|
| 1412 | @asaplog_post_dec |
|---|
| 1413 | def print_header(self, plot=True, fontsize=9, logger=False, selstr='', extrastr=''): |
|---|
| 1414 | """ |
|---|
| 1415 | print data (scantable) header on the plot and/or logger. |
|---|
| 1416 | To plot the header on the plot, this method should be called after |
|---|
| 1417 | plotting spectra by the method, asapplotter.plot. |
|---|
| 1418 | Parameters: |
|---|
| 1419 | plot: whether or not print header info on the plot. |
|---|
| 1420 | fontsize: header font size (valid only plot=True) |
|---|
| 1421 | logger: whether or not print header info on the logger. |
|---|
| 1422 | selstr: additional selection string (not verified) |
|---|
| 1423 | extrastr: additional string to print at the beginning (not verified) |
|---|
| 1424 | """ |
|---|
| 1425 | if not plot and not logger: |
|---|
| 1426 | return |
|---|
| 1427 | if not self._data: |
|---|
| 1428 | raise RuntimeError("No scantable has been set yet.") |
|---|
| 1429 | # Now header will be printed on plot and/or logger. |
|---|
| 1430 | # Get header information and format it. |
|---|
| 1431 | ssum=self._data._list_header() |
|---|
| 1432 | # Print Observation header to the upper-left corner of plot |
|---|
| 1433 | headstr=[ssum[ssum.find('Observer:'):ssum.find('Flux Unit:')]] |
|---|
| 1434 | headstr.append(ssum[ssum.find('Beams:'):ssum.find('Observer:')] |
|---|
| 1435 | +ssum[ssum.find('Rest Freqs:'):ssum.find('Abcissa:')]) |
|---|
| 1436 | if extrastr != '': |
|---|
| 1437 | headstr[0]=extrastr+'\n'+headstr[0] |
|---|
| 1438 | self._headtext['extrastr'] = extrastr |
|---|
| 1439 | if selstr != '': |
|---|
| 1440 | selstr += '\n' |
|---|
| 1441 | self._headtext['selstr'] = selstr |
|---|
| 1442 | ssel=(selstr+self._data.get_selection().__str__()+self._selection.__str__() or 'none') |
|---|
| 1443 | headstr.append('***Selections***\n'+ssel) |
|---|
| 1444 | |
|---|
| 1445 | if plot: |
|---|
| 1446 | self._plotter.hold() |
|---|
| 1447 | self._header_plot(headstr,fontsize=fontsize) |
|---|
| 1448 | import time |
|---|
| 1449 | self._plotter.figure.text(0.99,0.01, |
|---|
| 1450 | time.strftime("%a %d %b %Y %H:%M:%S %Z"), |
|---|
| 1451 | horizontalalignment='right', |
|---|
| 1452 | verticalalignment='bottom',fontsize=8) |
|---|
| 1453 | self._plotter.release() |
|---|
| 1454 | if logger: |
|---|
| 1455 | selstr = "Selections: "+ssel |
|---|
| 1456 | asaplog.push("----------------\n Plot Summary\n----------------") |
|---|
| 1457 | asaplog.push(extrastr) |
|---|
| 1458 | asaplog.push(ssum[ssum.find('Beams:'):ssum.find('Selection:')]\ |
|---|
| 1459 | #+ selstr + ssum[ssum.find('Scan Source'):]) |
|---|
| 1460 | + selstr) |
|---|
| 1461 | self._headtext['string'] = headstr |
|---|
| 1462 | del ssel, ssum, headstr |
|---|
| 1463 | |
|---|
| 1464 | def _header_plot(self, texts, fontsize=9): |
|---|
| 1465 | self._headtext['textobj']=[] |
|---|
| 1466 | nstcol=len(texts) |
|---|
| 1467 | for i in range(nstcol): |
|---|
| 1468 | self._headtext['textobj'].append( |
|---|
| 1469 | self._plotter.figure.text(0.03+float(i)/nstcol,0.98, |
|---|
| 1470 | texts[i], |
|---|
| 1471 | horizontalalignment='left', |
|---|
| 1472 | verticalalignment='top', |
|---|
| 1473 | fontsize=fontsize)) |
|---|
| 1474 | |
|---|
| 1475 | def clear_header(self): |
|---|
| 1476 | if not self._headtext['textobj']: |
|---|
| 1477 | asaplog.push("No header has been plotted. Exit without any operation") |
|---|
| 1478 | asaplog.post("WARN") |
|---|
| 1479 | else: |
|---|
| 1480 | self._plotter.hold() |
|---|
| 1481 | for textobj in self._headtext['textobj']: |
|---|
| 1482 | #if textobj.get_text() in self._headstring: |
|---|
| 1483 | try: |
|---|
| 1484 | textobj.remove() |
|---|
| 1485 | except NotImplementedError: |
|---|
| 1486 | self._plotter.figure.texts.pop(self._plotter.figure.texts.index(textobj)) |
|---|
| 1487 | self._plotter.release() |
|---|
| 1488 | self._reset_header() |
|---|
