[947] | 1 | from asap import rcParams, print_log, selector
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[709] | 2 | from numarray import logical_and
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[203] | 3 |
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| 4 | class asapplotter:
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[226] | 5 | """
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| 6 | The ASAP plotter.
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| 7 | By default the plotter is set up to plot polarisations
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| 8 | 'colour stacked' and scantables across panels.
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| 9 | Note:
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| 10 | Currenly it only plots 'spectra' not Tsys or
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| 11 | other variables.
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| 12 | """
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[734] | 13 | def __init__(self, visible=None):
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| 14 | self._visible = rcParams['plotter.gui']
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| 15 | if visible is not None:
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| 16 | self._visible = visible
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[710] | 17 | self._plotter = self._newplotter()
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| 18 |
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[920] | 19 |
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[554] | 20 | self._panelling = None
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| 21 | self._stacking = None
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| 22 | self.set_panelling()
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| 23 | self.set_stacking()
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[377] | 24 | self._rows = None
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| 25 | self._cols = None
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[203] | 26 | self._autoplot = False
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[525] | 27 | self._minmaxx = None
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| 28 | self._minmaxy = None
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[710] | 29 | self._datamask = None
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[203] | 30 | self._data = None
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[607] | 31 | self._lmap = None
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[226] | 32 | self._title = None
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[257] | 33 | self._ordinate = None
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| 34 | self._abcissa = None
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[709] | 35 | self._abcunit = None
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[920] | 36 | self._usermask = []
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| 37 | self._maskselection = None
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| 38 | self._selection = selector()
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[1021] | 39 | self._hist = None
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| 40 | if rcParams['plotter.histogram']: self._hist = "steps"
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| 41 | else: self._hist = "-"
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| 42 |
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[920] | 43 | def _translate(self, instr):
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| 44 | keys = "s b i p t".split()
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| 45 | if isinstance(instr, str):
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| 46 | for key in keys:
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| 47 | if instr.lower().startswith(key):
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| 48 | return key
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| 49 | return None
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| 50 |
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[710] | 51 | def _newplotter(self):
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| 52 | if self._visible:
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| 53 | from asap.asaplotgui import asaplotgui as asaplot
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| 54 | else:
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| 55 | from asap.asaplot import asaplot
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| 56 | return asaplot()
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| 57 |
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| 58 |
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[935] | 59 | def plot(self, scan=None):
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[203] | 60 | """
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[920] | 61 | Plot a scantable.
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[203] | 62 | Parameters:
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[920] | 63 | scan: a scantable
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[203] | 64 | Note:
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[920] | 65 | If a scantable was specified in a previous call
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[203] | 66 | to plot, no argument has to be given to 'replot'
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[920] | 67 | NO checking is done that the abcissas of the scantable
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[203] | 68 | are consistent e.g. all 'channel' or all 'velocity' etc.
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| 69 | """
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[710] | 70 | if self._plotter.is_dead:
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| 71 | self._plotter = self._newplotter()
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[600] | 72 | self._plotter.hold()
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[203] | 73 | self._plotter.clear()
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[920] | 74 | from asap import scantable
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[935] | 75 | if not self._data and not scan:
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| 76 | print "please provide a scantable to plot"
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[920] | 77 | if isinstance(scan, scantable):
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[709] | 78 | if self._data is not None:
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[920] | 79 | if scan != self._data:
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| 80 | self._data = scan
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[710] | 81 | # reset
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| 82 | self._reset()
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[525] | 83 | else:
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[920] | 84 | self._data = scan
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[710] | 85 | self._reset()
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[709] | 86 | # ranges become invalid when unit changes
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[935] | 87 | if self._abcunit and self._abcunit != self._data.get_unit():
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[709] | 88 | self._minmaxx = None
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| 89 | self._minmaxy = None
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[920] | 90 | self._abcunit = self._data.get_unit()
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[710] | 91 | self._datamask = None
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[920] | 92 | self._plot(self._data)
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[709] | 93 | if self._minmaxy is not None:
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| 94 | self._plotter.set_limits(ylim=self._minmaxy)
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[203] | 95 | self._plotter.release()
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[753] | 96 | print_log()
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[203] | 97 | return
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| 98 |
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[226] | 99 | def set_mode(self, stacking=None, panelling=None):
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[203] | 100 | """
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[377] | 101 | Set the plots look and feel, i.e. what you want to see on the plot.
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[203] | 102 | Parameters:
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| 103 | stacking: tell the plotter which variable to plot
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[710] | 104 | as line color overlays (default 'pol')
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[203] | 105 | panelling: tell the plotter which variable to plot
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| 106 | across multiple panels (default 'scan'
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| 107 | Note:
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| 108 | Valid modes are:
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| 109 | 'beam' 'Beam' 'b': Beams
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| 110 | 'if' 'IF' 'i': IFs
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| 111 | 'pol' 'Pol' 'p': Polarisations
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| 112 | 'scan' 'Scan' 's': Scans
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| 113 | 'time' 'Time' 't': Times
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| 114 | """
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[753] | 115 | msg = "Invalid mode"
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| 116 | if not self.set_panelling(panelling) or \
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| 117 | not self.set_stacking(stacking):
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| 118 | if rcParams['verbose']:
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| 119 | print msg
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| 120 | return
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| 121 | else:
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| 122 | raise TypeError(msg)
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[920] | 123 | if self._data: self.plot(self._data)
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[203] | 124 | return
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| 125 |
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[554] | 126 | def set_panelling(self, what=None):
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| 127 | mode = what
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| 128 | if mode is None:
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| 129 | mode = rcParams['plotter.panelling']
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| 130 | md = self._translate(mode)
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[203] | 131 | if md:
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[554] | 132 | self._panelling = md
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[226] | 133 | self._title = None
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[203] | 134 | return True
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| 135 | return False
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| 136 |
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[377] | 137 | def set_layout(self,rows=None,cols=None):
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| 138 | """
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| 139 | Set the multi-panel layout, i.e. how many rows and columns plots
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| 140 | are visible.
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| 141 | Parameters:
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| 142 | rows: The number of rows of plots
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| 143 | cols: The number of columns of plots
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| 144 | Note:
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| 145 | If no argument is given, the potter reverts to its auto-plot
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| 146 | behaviour.
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| 147 | """
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| 148 | self._rows = rows
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| 149 | self._cols = cols
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[920] | 150 | if self._data: self.plot(self._data)
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[377] | 151 | return
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| 152 |
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[709] | 153 | def set_stacking(self, what=None):
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[554] | 154 | mode = what
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[709] | 155 | if mode is None:
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| 156 | mode = rcParams['plotter.stacking']
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[554] | 157 | md = self._translate(mode)
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[203] | 158 | if md:
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| 159 | self._stacking = md
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[226] | 160 | self._lmap = None
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[203] | 161 | return True
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| 162 | return False
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| 163 |
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[525] | 164 | def set_range(self,xstart=None,xend=None,ystart=None,yend=None):
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[203] | 165 | """
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| 166 | Set the range of interest on the abcissa of the plot
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| 167 | Parameters:
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[525] | 168 | [x,y]start,[x,y]end: The start and end points of the 'zoom' window
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[203] | 169 | Note:
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| 170 | These become non-sensical when the unit changes.
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| 171 | use plotter.set_range() without parameters to reset
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| 172 |
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| 173 | """
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[525] | 174 | if xstart is None and xend is None:
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| 175 | self._minmaxx = None
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[600] | 176 | else:
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| 177 | self._minmaxx = [xstart,xend]
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[525] | 178 | if ystart is None and yend is None:
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| 179 | self._minmaxy = None
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[600] | 180 | else:
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[709] | 181 | self._minmaxy = [ystart,yend]
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[920] | 182 | if self._data: self.plot(self._data)
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[203] | 183 | return
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[709] | 184 |
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[257] | 185 | def set_legend(self, mp=None):
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[203] | 186 | """
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| 187 | Specify a mapping for the legend instead of using the default
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| 188 | indices:
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| 189 | Parameters:
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| 190 | mp: a list of 'strings'. This should have the same length
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| 191 | as the number of elements on the legend and then maps
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[710] | 192 | to the indeces in order. It is possible to uses latex
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| 193 | math expression. These have to be enclosed in r'', e.g. r'$x^{2}$'
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[203] | 194 |
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| 195 | Example:
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[485] | 196 | If the data has two IFs/rest frequencies with index 0 and 1
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[203] | 197 | for CO and SiO:
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| 198 | plotter.set_stacking('i')
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[710] | 199 | plotter.set_legend(['CO','SiO'])
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[203] | 200 | plotter.plot()
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[710] | 201 | plotter.set_legend([r'$^{12}CO$', r'SiO'])
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[203] | 202 | """
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| 203 | self._lmap = mp
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[920] | 204 | if self._data: self.plot(self._data)
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[226] | 205 | return
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| 206 |
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| 207 | def set_title(self, title=None):
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[710] | 208 | """
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| 209 | Set the title of the plot. If multiple panels are plotted,
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| 210 | multiple titles have to be specified.
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| 211 | Example:
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| 212 | # two panels are visible on the plotter
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| 213 | plotter.set_title(["First Panel","Second Panel"])
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| 214 | """
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[226] | 215 | self._title = title
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[920] | 216 | if self._data: self.plot(self._data)
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[226] | 217 | return
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| 218 |
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[257] | 219 | def set_ordinate(self, ordinate=None):
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[710] | 220 | """
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| 221 | Set the y-axis label of the plot. If multiple panels are plotted,
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| 222 | multiple labels have to be specified.
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[1021] | 223 | Parameters:
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| 224 | ordinate: a list of ordinate labels. None (default) let
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| 225 | data determine the labels
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[710] | 226 | Example:
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| 227 | # two panels are visible on the plotter
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| 228 | plotter.set_ordinate(["First Y-Axis","Second Y-Axis"])
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| 229 | """
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[257] | 230 | self._ordinate = ordinate
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[920] | 231 | if self._data: self.plot(self._data)
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[257] | 232 | return
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| 233 |
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| 234 | def set_abcissa(self, abcissa=None):
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[710] | 235 | """
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| 236 | Set the x-axis label of the plot. If multiple panels are plotted,
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| 237 | multiple labels have to be specified.
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[1021] | 238 | Parameters:
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| 239 | abcissa: a list of abcissa labels. None (default) let
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| 240 | data determine the labels
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[710] | 241 | Example:
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| 242 | # two panels are visible on the plotter
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| 243 | plotter.set_ordinate(["First X-Axis","Second X-Axis"])
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| 244 | """
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[257] | 245 | self._abcissa = abcissa
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[920] | 246 | if self._data: self.plot(self._data)
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[257] | 247 | return
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| 248 |
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[710] | 249 | def set_colors(self, colormap):
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[377] | 250 | """
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[710] | 251 | Set the colors to be used. The plotter will cycle through
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| 252 | these colors when lines are overlaid (stacking mode).
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[1021] | 253 | Parameters:
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| 254 | colormap: a list of colour names
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[710] | 255 | Example:
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| 256 | plotter.set_colors("red green blue")
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| 257 | # If for example four lines are overlaid e.g I Q U V
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| 258 | # 'I' will be 'red', 'Q' will be 'green', U will be 'blue'
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| 259 | # and 'V' will be 'red' again.
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| 260 | """
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| 261 | if isinstance(colormap,str):
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| 262 | colormap = colormap.split()
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| 263 | self._plotter.palette(0,colormap=colormap)
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[920] | 264 | if self._data: self.plot(self._data)
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[710] | 265 |
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[1021] | 266 | def set_histogram(self, hist=True):
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| 267 | """
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| 268 | Enable/Disable histogram-like plotting.
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| 269 | Parameters:
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| 270 | hist: True (default) or False. The fisrt default
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| 271 | is taken from the .asaprc setting
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| 272 | plotter.histogram
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| 273 | """
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| 274 | if hist: self._hist = "steps"
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| 275 | else: self._hist = "-"
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| 276 | if self._data: self.plot(self._data)
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| 277 |
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[710] | 278 | def set_linestyles(self, linestyles):
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| 279 | """
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[734] | 280 | Set the linestyles to be used. The plotter will cycle through
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| 281 | these linestyles when lines are overlaid (stacking mode) AND
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| 282 | only one color has been set.
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[710] | 283 | Parameters:
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| 284 | linestyles: a list of linestyles to use.
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| 285 | 'line', 'dashed', 'dotted', 'dashdot',
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| 286 | 'dashdotdot' and 'dashdashdot' are
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| 287 | possible
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| 288 |
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| 289 | Example:
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| 290 | plotter.set_colors("black")
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| 291 | plotter.set_linestyles("line dashed dotted dashdot")
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| 292 | # If for example four lines are overlaid e.g I Q U V
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| 293 | # 'I' will be 'solid', 'Q' will be 'dashed',
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| 294 | # U will be 'dotted' and 'V' will be 'dashdot'.
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| 295 | """
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| 296 | if isinstance(linestyles,str):
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| 297 | linestyles = linestyles.split()
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| 298 | self._plotter.palette(color=0,linestyle=0,linestyles=linestyles)
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[920] | 299 | if self._data: self.plot(self._data)
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[710] | 300 |
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| 301 | def save(self, filename=None, orientation=None, dpi=None):
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| 302 | """
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[377] | 303 | Save the plot to a file. The know formats are 'png', 'ps', 'eps'.
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| 304 | Parameters:
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| 305 | filename: The name of the output file. This is optional
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| 306 | and autodetects the image format from the file
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| 307 | suffix. If non filename is specified a file
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| 308 | called 'yyyymmdd_hhmmss.png' is created in the
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| 309 | current directory.
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[709] | 310 | orientation: optional parameter for postscript only (not eps).
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| 311 | 'landscape', 'portrait' or None (default) are valid.
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| 312 | If None is choosen for 'ps' output, the plot is
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| 313 | automatically oriented to fill the page.
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[710] | 314 | dpi: The dpi of the output non-ps plot
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[377] | 315 | """
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[709] | 316 | self._plotter.save(filename,orientation,dpi)
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[377] | 317 | return
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[709] | 318 |
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[257] | 319 |
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[920] | 320 | def set_mask(self, mask=None, selection=None):
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[525] | 321 | """
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[734] | 322 | Set a plotting mask for a specific polarization.
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| 323 | This is useful for masking out "noise" Pangle outside a source.
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| 324 | Parameters:
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[920] | 325 | mask: a mask from scantable.create_mask
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| 326 | selection: the spectra to apply the mask to.
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[734] | 327 | Example:
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[920] | 328 | select = selector()
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| 329 | select.setpolstrings("Pangle")
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| 330 | plotter.set_mask(mymask, select)
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[734] | 331 | """
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[710] | 332 | if not self._data:
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[920] | 333 | msg = "Can only set mask after a first call to plot()"
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[753] | 334 | if rcParams['verbose']:
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| 335 | print msg
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[762] | 336 | return
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[753] | 337 | else:
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[762] | 338 | raise RuntimeError(msg)
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[920] | 339 | if len(mask):
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| 340 | if isinstance(mask, list) or isinstance(mask, tuple):
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| 341 | self._usermask = array(mask)
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[710] | 342 | else:
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[920] | 343 | self._usermask = mask
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| 344 | if mask is None and selection is None:
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| 345 | self._usermask = []
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| 346 | self._maskselection = None
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| 347 | if isinstance(selection, selector):
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[947] | 348 | self._maskselection = {'b': selection.get_beams(),
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| 349 | 's': selection.get_scans(),
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| 350 | 'i': selection.get_ifs(),
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| 351 | 'p': selection.get_pols(),
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[920] | 352 | 't': [] }
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[710] | 353 | else:
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[920] | 354 | self._maskselection = None
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| 355 | self.plot(self._data)
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[710] | 356 |
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[709] | 357 | def _slice_indeces(self, data):
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| 358 | mn = self._minmaxx[0]
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| 359 | mx = self._minmaxx[1]
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| 360 | asc = data[0] < data[-1]
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| 361 | start=0
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| 362 | end = len(data)-1
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| 363 | inc = 1
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| 364 | if not asc:
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| 365 | start = len(data)-1
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| 366 | end = 0
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| 367 | inc = -1
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| 368 | # find min index
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| 369 | while data[start] < mn:
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| 370 | start+= inc
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| 371 | # find max index
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| 372 | while data[end] > mx:
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| 373 | end-=inc
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| 374 | end +=1
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| 375 | if start > end:
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| 376 | return end,start
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| 377 | return start,end
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| 378 |
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[710] | 379 | def _reset(self):
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[920] | 380 | self._usermask = []
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[710] | 381 | self._usermaskspectra = None
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[920] | 382 | self.set_selection(None, False)
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| 383 |
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| 384 | def _plot(self, scan):
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[947] | 385 | savesel = scan.get_selection()
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| 386 | sel = savesel + self._selection
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| 387 | d0 = {'s': 'SCANNO', 'b': 'BEAMNO', 'i':'IFNO',
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| 388 | 'p': 'POLNO', 'c': 'CYCLENO', 't' : 'TIME' }
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| 389 | order = [d0[self._panelling],d0[self._stacking]]
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| 390 | sel.set_order(order)
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| 391 | scan.set_selection(sel)
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[920] | 392 | d = {'b': scan.getbeam, 's': scan.getscan,
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| 393 | 'i': scan.getif, 'p': scan.getpol, 't': scan._gettime }
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| 394 |
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[947] | 395 | polmodes = dict(zip(self._selection.get_pols(),self._selection.get_poltypes()))
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[920] | 396 | n,nstack = self._get_selected_n(scan)
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[998] | 397 | maxpanel, maxstack = 16,8
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[920] | 398 | if n > maxpanel or nstack > maxstack:
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| 399 | from asap import asaplog
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| 400 | msg ="Scan to be plotted contains more than %d selections.\n" \
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| 401 | "Selecting first %d selections..." % (maxpanel,maxpanel)
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| 402 | asaplog.push(msg)
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| 403 | print_log()
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| 404 | n = min(n,maxpanel)
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[998] | 405 | nstack = min(nstack,maxstack)
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[920] | 406 |
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| 407 | if n > 1:
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| 408 | ganged = rcParams['plotter.ganged']
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| 409 | if self._rows and self._cols:
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| 410 | n = min(n,self._rows*self._cols)
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| 411 | self._plotter.set_panels(rows=self._rows,cols=self._cols,
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| 412 | nplots=n,ganged=ganged)
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| 413 | else:
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| 414 | self._plotter.set_panels(rows=n,cols=0,nplots=n,ganged=ganged)
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| 415 | else:
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| 416 | self._plotter.set_panels()
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| 417 | r=0
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| 418 | nr = scan.nrow()
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| 419 | a0,b0 = -1,-1
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| 420 | allxlim = []
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[1018] | 421 | allylim = []
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[920] | 422 | newpanel=True
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| 423 | panelcount,stackcount = 0,0
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[1002] | 424 | while r < nr:
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[920] | 425 | a = d[self._panelling](r)
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| 426 | b = d[self._stacking](r)
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| 427 | if a > a0 and panelcount < n:
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| 428 | if n > 1:
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| 429 | self._plotter.subplot(panelcount)
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| 430 | self._plotter.palette(0)
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| 431 | #title
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| 432 | xlab = self._abcissa and self._abcissa[panelcount] \
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| 433 | or scan._getabcissalabel()
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| 434 | ylab = self._ordinate and self._ordinate[panelcount] \
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| 435 | or scan._get_ordinate_label()
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| 436 | self._plotter.set_axes('xlabel',xlab)
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| 437 | self._plotter.set_axes('ylabel',ylab)
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| 438 | lbl = self._get_label(scan, r, self._panelling, self._title)
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| 439 | if isinstance(lbl, list) or isinstance(lbl, tuple):
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| 440 | if 0 <= panelcount < len(lbl):
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| 441 | lbl = lbl[panelcount]
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| 442 | else:
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| 443 | # get default label
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| 444 | lbl = self._get_label(scan, r, self._panelling, None)
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| 445 | self._plotter.set_axes('title',lbl)
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| 446 | newpanel = True
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| 447 | stackcount =0
|
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| 448 | panelcount += 1
|
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| 449 | if (b > b0 or newpanel) and stackcount < nstack:
|
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| 450 | y = []
|
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| 451 | if len(polmodes):
|
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| 452 | y = scan._getspectrum(r, polmodes[scan.getpol(r)])
|
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| 453 | else:
|
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| 454 | y = scan._getspectrum(r)
|
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| 455 | m = scan._getmask(r)
|
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| 456 | if self._maskselection and len(self._usermask) == len(m):
|
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| 457 | if d[self._stacking](r) in self._maskselection[self._stacking]:
|
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| 458 | print "debug"
|
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| 459 | m = logical_and(m, self._usermask)
|
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| 460 | x = scan._getabcissa(r)
|
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| 461 | if self._minmaxx is not None:
|
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| 462 | s,e = self._slice_indeces(x)
|
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| 463 | x = x[s:e]
|
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| 464 | y = y[s:e]
|
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| 465 | m = m[s:e]
|
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[1021] | 466 | if len(x) > 2048 and rcParams['plotter.decimate']:
|
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| 467 | fac = len(x)/2048
|
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[920] | 468 | x = x[::fac]
|
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| 469 | m = m[::fac]
|
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| 470 | y = y[::fac]
|
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| 471 | llbl = self._get_label(scan, r, self._stacking, self._lmap)
|
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| 472 | if isinstance(llbl, list) or isinstance(llbl, tuple):
|
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| 473 | if 0 <= stackcount < len(llbl):
|
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| 474 | # use user label
|
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| 475 | llbl = llbl[stackcount]
|
---|
| 476 | else:
|
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| 477 | # get default label
|
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| 478 | llbl = self._get_label(scan, r, self._stacking, None)
|
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| 479 | self._plotter.set_line(label=llbl)
|
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[1021] | 480 | self._plotter.set_line(linestyle=self._hist)
|
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[920] | 481 | self._plotter.plot(x,y,m)
|
---|
| 482 | xlim= self._minmaxx or [min(x),max(x)]
|
---|
| 483 | allxlim += xlim
|
---|
[1018] | 484 | ylim= self._minmaxy or [min(y),max(y)]
|
---|
| 485 | allylim += ylim
|
---|
[920] | 486 | stackcount += 1
|
---|
| 487 | # last in colour stack -> autoscale x
|
---|
| 488 | if stackcount == nstack:
|
---|
| 489 | allxlim.sort()
|
---|
| 490 | self._plotter.axes.set_xlim([allxlim[0],allxlim[-1]])
|
---|
| 491 | # clear
|
---|
| 492 | allxlim =[]
|
---|
| 493 |
|
---|
| 494 | newpanel = False
|
---|
| 495 | a0=a
|
---|
| 496 | b0=b
|
---|
| 497 | # ignore following rows
|
---|
| 498 | if (panelcount == n) and (stackcount == nstack):
|
---|
[1018] | 499 | # last panel -> autoscale y if ganged
|
---|
| 500 | if rcParams['plotter.ganged']:
|
---|
| 501 | allylim.sort()
|
---|
| 502 | self._plotter.set_limits(ylim=[allylim[0],allylim[-1]])
|
---|
[998] | 503 | break
|
---|
[920] | 504 | r+=1 # next row
|
---|
[947] | 505 | #reset the selector to the scantable's original
|
---|
| 506 | scan.set_selection(savesel)
|
---|
[920] | 507 |
|
---|
| 508 | def set_selection(self, selection=None, refresh=True):
|
---|
[947] | 509 | self._selection = isinstance(selection,selector) and selection or selector()
|
---|
[920] | 510 | d0 = {'s': 'SCANNO', 'b': 'BEAMNO', 'i':'IFNO',
|
---|
| 511 | 'p': 'POLNO', 'c': 'CYCLENO', 't' : 'TIME' }
|
---|
| 512 | order = [d0[self._panelling],d0[self._stacking]]
|
---|
[947] | 513 | self._selection.set_order(order)
|
---|
[920] | 514 | if self._data and refresh: self.plot(self._data)
|
---|
| 515 |
|
---|
| 516 | def _get_selected_n(self, scan):
|
---|
| 517 | d1 = {'b': scan.nbeam, 's': scan.nscan,
|
---|
| 518 | 'i': scan.nif, 'p': scan.npol, 't': scan.ncycle }
|
---|
[947] | 519 | d2 = { 'b': len(self._selection.get_beams()),
|
---|
| 520 | 's': len(self._selection.get_scans()),
|
---|
| 521 | 'i': len(self._selection.get_ifs()),
|
---|
| 522 | 'p': len(self._selection.get_pols()),
|
---|
| 523 | 't': len(self._selection.get_cycles()) }
|
---|
[920] | 524 | n = d2[self._panelling] or d1[self._panelling]()
|
---|
| 525 | nstack = d2[self._stacking] or d1[self._stacking]()
|
---|
| 526 | return n,nstack
|
---|
| 527 |
|
---|
| 528 | def _get_label(self, scan, row, mode, userlabel=None):
|
---|
[947] | 529 | pms = dict(zip(self._selection.get_pols(),self._selection.get_poltypes()))
|
---|
[920] | 530 | if len(pms):
|
---|
| 531 | poleval = scan._getpollabel(scan.getpol(row),pms[scan.getpol(row)])
|
---|
| 532 | else:
|
---|
| 533 | poleval = scan._getpollabel(scan.getpol(row),scan.poltype())
|
---|
| 534 | d = {'b': "Beam "+str(scan.getbeam(row)),
|
---|
| 535 | 's': scan._getsourcename(row),
|
---|
| 536 | 'i': "IF"+str(scan.getif(row)),
|
---|
[964] | 537 | 'p': poleval,
|
---|
[920] | 538 | 't': scan._gettime(row) }
|
---|
| 539 | return userlabel or d[mode]
|
---|