1 | from scantable import scantable |
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2 | from asap import rcParams |
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3 | |
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4 | def average_time(*args, **kwargs): |
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5 | """ |
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6 | Return the (time) average of a scan or list of scans. [in channels only] |
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7 | Parameters: |
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8 | one scan or comma separated scans |
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9 | mask: an optional mask (only used for 'var' and 'tsys' weighting) |
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10 | scanav: False (default) averages all scans together, |
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11 | True averages each scan separately |
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12 | weight: Weighting scheme. 'none' (default), 'var' (variance |
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13 | weighted), 'tsys' |
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14 | Example: |
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15 | # return a time averaged scan from scana and scanb |
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16 | # without using a mask |
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17 | scanav = average_time(scana,scanb) |
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18 | # return the (time) averaged scan, i.e. the average of |
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19 | # all correlator cycles |
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20 | scanav = average_time(scan) |
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21 | |
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22 | """ |
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23 | scanAv = False |
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24 | if kwargs.has_key('scanav'): |
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25 | scanAv = kwargs.get('scanav') |
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26 | |
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27 | weight = 'none' |
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28 | if kwargs.has_key('weight'): |
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29 | weight = kwargs.get('weight') |
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30 | |
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31 | mask = () |
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32 | if kwargs.has_key('mask'): |
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33 | mask = kwargs.get('mask') |
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34 | |
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35 | lst = tuple(args) |
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36 | from asap._asap import average as _av |
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37 | for s in lst: |
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38 | if not isinstance(s,scantable): |
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39 | print "Please give a list of scantables" |
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40 | return |
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41 | return scantable(_av(lst, mask, scanAv, weight)) |
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42 | |
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43 | def quotient(source, reference, preserve=True): |
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44 | """ |
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45 | Return the quotient of a 'source' (signal) scan and a 'reference' scan. |
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46 | The reference can have just one row, even if the signal has many. Otherwise |
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47 | they must have the same number of rows. |
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48 | Parameters: |
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49 | source: the 'on' scan |
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50 | reference: the 'off' scan |
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51 | preserve: you can preserve (default) the continuum or |
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52 | remove it. The equations used are |
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53 | preserve - Output = Tref * (sig/ref) - Tref |
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54 | remove - Output = Tref * (sig/ref) - Tsig |
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55 | """ |
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56 | from asap._asap import quotient as _quot |
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57 | return scantable(_quot(source, reference, preserve)) |
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58 | |
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59 | def simple_math(left, right, op='add'): |
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60 | """ |
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61 | Apply simple mathematical binary operations to two |
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62 | scan tables, returning the result in a new scan table. |
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63 | The operation is applied to both the correlations and the TSys data |
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64 | Parameters: |
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65 | left: the 'left' scan |
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66 | right: the 'right' scan |
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67 | op: the operation: 'add' (default), 'sub', 'mul', 'div' |
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68 | """ |
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69 | if not isinstance(left,scantable) and not isinstance(right,scantable): |
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70 | print "Please provide two scantables as input" |
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71 | return |
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72 | from asap._asap import b_operate as _bop |
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73 | return scantable(_bop(left, right, op)) |
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74 | |
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75 | def scale(scan, factor, insitu=None, allaxes=None): |
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76 | """ |
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77 | Return a scan where all spectra are scaled by the give 'factor' |
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78 | Parameters: |
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79 | scan: a scantable |
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80 | factor: the scaling factor |
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81 | insitu: if False a new scantable is returned. |
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82 | Otherwise, the scaling is done in-situ |
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83 | The default is taken from .asaprc (False) |
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84 | allaxes: if True apply to all spectra. Otherwise |
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85 | apply only to the selected (beam/pol/if)spectra only. |
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86 | The default is taken from .asaprc (True) |
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87 | """ |
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88 | if allaxes is None: allaxes = rcParams['scantable.allaxes'] |
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89 | if insitu is None: insitu = rcParams['insitu'] |
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90 | if not insitu: |
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91 | from asap._asap import scale as _scale |
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92 | return scantable(_scale(scan, factor, allaxes)) |
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93 | else: |
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94 | from asap._asap import scale_insitu as _scale |
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95 | _scale(scan, factor, allaxes) |
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96 | return |
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97 | |
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98 | |
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99 | def add(scan, offset, insitu=None, allaxes=None): |
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100 | """ |
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101 | Return a scan where all spectra have the offset added |
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102 | Parameters: |
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103 | scan: a scantable |
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104 | offset: the offset |
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105 | insitu: if False a new scantable is returned. |
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106 | Otherwise, the scaling is done in-situ |
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107 | The default is taken from .asaprc (False) |
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108 | allaxes: if True apply to all spectra. Otherwise |
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109 | apply only to the selected (beam/pol/if)spectra only |
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110 | The default is taken from .asaprc (True) |
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111 | """ |
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112 | if allaxes is None: allaxes = rcParams['scantable.allaxes'] |
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113 | if insitu is None: insitu = rcParams['insitu'] |
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114 | if not insitu: |
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115 | from asap._asap import add as _add |
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116 | return scantable(_add(scan, offset, allaxes)) |
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117 | else: |
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118 | from asap._asap import add_insitu as _add |
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119 | _add(scan, offset, allaxes) |
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120 | return |
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121 | |
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122 | def convert_flux(scan, area, eta=1.0, insitu=None, allaxes=None): |
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123 | """ |
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124 | Return a scan where all spectra are converted to either Jansky or Kelvin |
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125 | depending upon the flux units of the scan table. |
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126 | Parameters: |
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127 | scan: a scantable |
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128 | area: the illuminated area of the telescope (m**2) |
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129 | eta: The efficiency of the telescope (default 1.0) |
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130 | insitu: if False a new scantable is returned. |
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131 | Otherwise, the scaling is done in-situ |
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132 | The default is taken from .asaprc (False) |
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133 | allaxes: if True apply to all spectra. Otherwise |
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134 | apply only to the selected (beam/pol/if)spectra only |
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135 | The default is taken from .asaprc (True) |
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136 | """ |
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137 | if allaxes is None: allaxes = rcParams['scantable.allaxes'] |
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138 | if insitu is None: insitu = rcParams['insitu'] |
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139 | if not insitu: |
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140 | from asap._asap import convertflux as _convert |
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141 | return scantable(_convert(scan, area, eta, allaxes)) |
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142 | else: |
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143 | from asap._asap import convertflux_insitu as _convert |
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144 | _convert(scan, area, eta, allaxes) |
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145 | return |
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146 | |
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147 | def gain_el(scan, poly=None, filename="", method="linear", insitu=None, allaxes=None): |
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148 | """ |
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149 | Return a scan after applying a gain-elevation correction. The correction |
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150 | can be made via either a polynomial or a table-based interpolation |
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151 | (and extrapolation if necessary). |
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152 | You specify polynomial coefficients, an ascii table or neither. |
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153 | If you specify neither, then a polynomial correction will be made |
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154 | with built in coefficients known for certain telescopes (an error will |
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155 | occur if the instrument is not known). |
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156 | Parameters: |
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157 | scan: a scantable |
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158 | poly: Polynomial coefficients (default None) to compute a |
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159 | gain-elevation correction as a function of |
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160 | elevation (in degrees). |
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161 | filename: The name of an ascii file holding correction factors. |
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162 | The first row of the ascii file must give the column |
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163 | names and these MUST include columns |
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164 | "ELEVATION" (degrees) and "FACTOR" (multiply data by this) |
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165 | somewhere. |
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166 | The second row must give the data type of the column. Use |
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167 | 'R' for Real and 'I' for Integer. An example file |
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168 | would be: |
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169 | |
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170 | TIME ELEVATION FACTOR |
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171 | R R R |
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172 | 0.1 0 1.5 |
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173 | 0.2 20 1.4 |
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174 | 0.3 40 1.3 |
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175 | 0.4 60 1.2 |
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176 | 0.5 80 1.1 |
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177 | 0.6 90 1.0 |
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178 | method: Interpolation method when correcting from a table. Values |
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179 | are "nearest", "linear" (default), "cubic" and "spline" |
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180 | insitu: if False a new scantable is returned. |
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181 | Otherwise, the scaling is done in-situ |
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182 | The default is taken from .asaprc (False) |
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183 | allaxes: if True apply to all spectra. Otherwise |
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184 | apply only to the selected (beam/pol/if) spectra only |
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185 | The default is taken from .asaprc (True) |
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186 | """ |
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187 | if allaxes is None: allaxes = rcParams['scantable.allaxes'] |
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188 | if poly is None: |
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189 | poly = () |
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190 | if insitu is None: insitu = rcParams['insitu'] |
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191 | if not insitu: |
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192 | from asap._asap import gainel as _gainEl |
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193 | return scantable(_gainEl(scan, poly, filename, method, allaxes)) |
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194 | else: |
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195 | from asap._asap import gainel_insitu as _gainEl |
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196 | _gainEl(scan, poly, filename, method, allaxes) |
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197 | return |
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198 | |
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199 | def align(scan, insitu=None): |
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200 | """ |
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201 | Return a scan where all rows have been aligned in velocity. The |
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202 | velocity reference frame (e.gh. LSRK), unit and doppler (e.g. OPTICAL) |
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203 | are those set by functions set_unit and set_freqframe. The data |
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204 | are aligned to the velocity abcissa at the first time present in the data. |
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205 | scan: a scantable |
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206 | insitu: if False a new scantable is returned. |
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207 | Otherwise, the scaling is done in-situ |
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208 | The default is taken from .asaprc (False) |
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209 | """ |
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210 | if insitu is None: insitu = rcParams['insitu'] |
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211 | if not insitu: |
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212 | from asap._asap import align as _align |
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213 | return scantable(_align(scan)) |
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214 | else: |
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215 | from asap._asap import align_insitu as _align |
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216 | _align(scan) |
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217 | return |
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218 | |
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219 | def opacity(scan, tau, insitu=None, allaxes=None): |
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220 | """ |
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221 | Return a scan after applying an opacity correction. |
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222 | Parameters: |
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223 | scan: a scantable |
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224 | tau: Opacity from which the correction factor is exp(tau*ZD) |
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225 | where ZD is the zenith-distance |
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226 | insitu: if False a new scantable is returned. |
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227 | Otherwise, the scaling is done in-situ |
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228 | The default is taken from .asaprc (False) |
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229 | allaxes: if True apply to all spectra. Otherwise |
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230 | apply only to the selected (beam/pol/if)spectra only |
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231 | The default is taken from .asaprc (True) |
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232 | """ |
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233 | if allaxes is None: allaxes = rcParams['scantable.allaxes'] |
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234 | if insitu is None: insitu = rcParams['insitu'] |
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235 | if not insitu: |
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236 | from asap._asap import opacity as _opacity |
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237 | return scantable(_opacity(scan, tau, allaxes)) |
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238 | else: |
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239 | from asap._asap import opacity_insitu as _opacity |
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240 | _opacity(scan, tau, allaxes) |
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241 | return |
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242 | |
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243 | def bin(scan, width=5, insitu=None): |
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244 | """ |
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245 | Return a scan where all spectra have been binned up |
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246 | width: The bin width (default=5) in pixels |
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247 | insitu: if False a new scantable is returned. |
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248 | Otherwise, the scaling is done in-situ |
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249 | The default is taken from .asaprc (False) |
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250 | """ |
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251 | if insitu is None: insitu = rcParams['insitu'] |
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252 | if not insitu: |
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253 | from asap._asap import bin as _bin |
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254 | return scantable(_bin(scan, width)) |
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255 | else: |
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256 | from asap._asap import bin_insitu as _bin |
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257 | _bin(scan, width) |
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258 | return |
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259 | |
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260 | def average_pol(scan, mask=None, insitu=None): |
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261 | """ |
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262 | Average the Polarisations together. |
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263 | Parameters: |
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264 | scan: The scantable |
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265 | mask: An optional mask defining the region, where the |
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266 | averaging will be applied. The output will have all |
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267 | specified points masked. |
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268 | insitu: if False a new scantable is returned. |
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269 | Otherwise, the scaling is done in-situ |
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270 | The default is taken from .asaprc (False) |
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271 | Example: |
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272 | polav = average_pols(myscan) |
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273 | """ |
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274 | if mask is None: |
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275 | mask = () |
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276 | if insitu is None: insitu = rcParams['insitu'] |
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277 | if not insitu: |
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278 | from asap._asap import averagepol as _avpol |
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279 | return scantable(_avpol(scan, mask)) |
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280 | else: |
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281 | from asap._asap import averagepol_insitu as _avpol |
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282 | _avpol(scan, mask) |
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283 | return |
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284 | |
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285 | def smooth(scan, kernel="hanning", width=5.0, insitu=None, allaxes=None): |
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286 | """ |
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287 | Smooth the spectrum by the specified kernel (conserving flux). |
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288 | Parameters: |
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289 | scan: The input scan |
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290 | kernel: The type of smoothing kernel. Select from |
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291 | 'hanning' (default), 'gaussian' and 'boxcar'. |
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292 | The first three characters are sufficient. |
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293 | width: The width of the kernel in pixels. For hanning this is |
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294 | ignored otherwise it defauls to 5 pixels. |
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295 | For 'gaussian' it is the Full Width Half |
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296 | Maximum. For 'boxcar' it is the full width. |
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297 | insitu: if False a new scantable is returned. |
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298 | Otherwise, the scaling is done in-situ |
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299 | The default is taken from .asaprc (False) |
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300 | allaxes: If True (default) apply to all spectra. Otherwise |
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301 | apply only to the selected (beam/pol/if)spectra only |
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302 | The default is taken from .asaprc (True) |
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303 | Example: |
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304 | none |
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305 | """ |
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306 | if allaxes is None: allaxes = rcParams['scantable.allaxes'] |
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307 | if insitu is None: insitu = rcParams['insitu'] |
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308 | if not insitu: |
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309 | from asap._asap import smooth as _smooth |
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310 | return scantable(_smooth(scan,kernel,width,allaxes)) |
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311 | else: |
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312 | from asap._asap import smooth_insitu as _smooth |
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313 | _smooth(scan,kernel,width,allaxes) |
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314 | return |
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315 | |
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316 | def poly_baseline(scan, mask=None, order=0, insitu=None): |
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317 | """ |
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318 | Return a scan which has been baselined (all rows) by a polynomial. |
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319 | Parameters: |
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320 | scan: a scantable |
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321 | mask: an optional mask |
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322 | order: the order of the polynomial (default is 0) |
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323 | insitu: if False a new scantable is returned. |
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324 | Otherwise, the scaling is done in-situ |
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325 | The default is taken from .asaprc (False) |
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326 | Example: |
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327 | # return a scan baselined by a third order polynomial, |
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328 | # not using a mask |
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329 | bscan = poly_baseline(scan, order=3) |
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330 | """ |
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331 | from asap.asapfitter import fitter |
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332 | if mask is None: |
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333 | from numarray import ones |
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334 | mask = tuple(ones(scan.nchan())) |
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335 | f = fitter() |
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336 | f._verbose(True) |
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337 | f.set_scan(scan, mask) |
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338 | f.set_function(poly=order) |
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339 | sf = f.auto_fit(insitu) |
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340 | return sf |
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