| 1 | from asap.scantable import scantable
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| 2 | from asap import rcParams
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| 3 | from asap import print_log
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| 4 |
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| 5 | def average_time(*args, **kwargs):
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| 6 | """
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| 7 | Return the (time) average of a scan or list of scans. [in channels only]
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| 8 | The cursor of the output scan is set to 0
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| 9 | Parameters:
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| 10 | one scan or comma separated scans
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| 11 | mask: an optional mask (only used for 'var' and 'tsys' weighting)
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| 12 | scanav: True averages each scan separately.
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| 13 | False (default) averages all scans together,
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| 14 | weight: Weighting scheme.
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| 15 | 'none' (mean no weight)
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| 16 | 'var' (1/var(spec) weighted)
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| 17 | 'tsys' (1/Tsys**2 weighted)
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| 18 | 'tint' (integration time weighted)
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| 19 | 'tintsys' (Tint/Tsys**2)
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| 20 | 'median' ( median averaging)
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| 21 | align: align the spectra in velocity before averaging. It takes
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| 22 | the time of the first spectrum in the first scantable
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| 23 | as reference time.
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| 24 | Example:
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| 25 | # return a time averaged scan from scana and scanb
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| 26 | # without using a mask
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| 27 | scanav = average_time(scana,scanb)
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| 28 | # return the (time) averaged scan, i.e. the average of
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| 29 | # all correlator cycles
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| 30 | scanav = average_time(scan, scanav=True)
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| 31 | """
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| 32 | scanav = False
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| 33 | if kwargs.has_key('scanav'):
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| 34 | scanav = kwargs.get('scanav')
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| 35 | weight = 'tint'
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| 36 | if kwargs.has_key('weight'):
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| 37 | weight = kwargs.get('weight')
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| 38 | mask = ()
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| 39 | if kwargs.has_key('mask'):
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| 40 | mask = kwargs.get('mask')
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| 41 | align = False
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| 42 | if kwargs.has_key('align'):
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| 43 | align = kwargs.get('align')
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| 44 | varlist = vars()
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| 45 | if isinstance(args[0],list):
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| 46 | lst = args[0]
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| 47 | elif isinstance(args[0],tuple):
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| 48 | lst = list(args[0])
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| 49 | else:
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| 50 | lst = list(args)
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| 51 |
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| 52 | del varlist["kwargs"]
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| 53 | varlist["args"] = "%d scantables" % len(lst)
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| 54 | # need special formatting here for history...
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| 55 |
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| 56 | from asap._asap import stmath
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| 57 | stm = stmath()
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| 58 | for s in lst:
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| 59 | if not isinstance(s,scantable):
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| 60 | msg = "Please give a list of scantables"
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| 61 | if rcParams['verbose']:
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| 62 | print msg
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| 63 | return
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| 64 | else:
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| 65 | raise TypeError(msg)
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| 66 | if scanav: scanav = "SCAN"
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| 67 | else: scanav = "NONE"
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| 68 | alignedlst = []
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| 69 | if align:
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| 70 | refepoch = lst[0].get_time(0)
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| 71 | for scan in lst:
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| 72 | alignedlst.append(scan.freq_align(refepoch,insitu=False))
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| 73 | else:
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| 74 | alignedlst = lst
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| 75 | if weight.upper() == 'MEDIAN':
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| 76 | # median doesn't support list of scantables - merge first
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| 77 | merged = None
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| 78 | if len(alignedlst) > 1:
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| 79 | merged = merge(alignedlst)
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| 80 | else:
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| 81 | merged = alignedlst[0]
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| 82 | s = scantable(stm._averagechannel(merged, 'MEDIAN', scanav))
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| 83 | del merged
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| 84 | else:
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| 85 | s = scantable(stm._average(alignedlst, mask, weight.upper(), scanav))
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| 86 | s._add_history("average_time",varlist)
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| 87 | print_log()
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| 88 | return s
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| 89 |
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| 90 | def quotient(source, reference, preserve=True):
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| 91 | """
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| 92 | Return the quotient of a 'source' (signal) scan and a 'reference' scan.
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| 93 | The reference can have just one scan, even if the signal has many. Otherwise
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| 94 | they must have the same number of scans.
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| 95 | The cursor of the output scan is set to 0
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| 96 | Parameters:
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| 97 | source: the 'on' scan
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| 98 | reference: the 'off' scan
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| 99 | preserve: you can preserve (default) the continuum or
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| 100 | remove it. The equations used are
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| 101 | preserve: Output = Toff * (on/off) - Toff
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| 102 | remove: Output = Toff * (on/off) - Ton
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| 103 | """
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| 104 | varlist = vars()
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| 105 | from asap._asap import stmath
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| 106 | stm = stmath()
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| 107 | stm._setinsitu(False)
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| 108 | s = scantable(stm._quotient(source, reference, preserve))
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| 109 | s._add_history("quotient",varlist)
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| 110 | print_log()
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| 111 | return s
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| 112 |
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| 113 | def simple_math(left, right, op='add', tsys=True):
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| 114 | """
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| 115 | Apply simple mathematical binary operations to two
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| 116 | scan tables, returning the result in a new scan table.
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| 117 | The operation is applied to both the correlations and the TSys data
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| 118 | The cursor of the output scan is set to 0
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| 119 | Parameters:
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| 120 | left: the 'left' scan
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| 121 | right: the 'right' scan
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| 122 | op: the operation: 'add' (default), 'sub', 'mul', 'div'
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| 123 | tsys: if True (default) then apply the operation to Tsys
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| 124 | as well as the data
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| 125 | """
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| 126 | varlist = vars()
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| 127 | print "Not yet available in asap"
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| 128 | return
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| 129 | if not isinstance(left,scantable) and not isinstance(right,scantable):
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| 130 | msg = "Please provide two scantables as input"
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| 131 | if rcParams['verbose']:
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| 132 | print msg
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| 133 | return
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| 134 | else:
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| 135 | raise TypeError(msg)
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| 136 | s = scantable(stm._bop(left, right, op, tsys))
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| 137 | s._add_history("simple_math", varlist)
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| 138 | print_log()
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| 139 | return s
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| 140 |
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| 141 | def merge(*args):
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| 142 | """
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| 143 | """
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| 144 | varlist = vars()
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| 145 | if isinstance(args[0],list):
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| 146 | lst = tuple(args[0])
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| 147 | elif isinstance(args[0],tuple):
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| 148 | lst = args[0]
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| 149 | else:
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| 150 | lst = tuple(args)
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| 151 | varlist["args"] = "%d scantables" % len(lst)
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| 152 | # need special formatting her for history...
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| 153 | from asap._asap import stmath
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| 154 | stm = stmath()
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| 155 | for s in lst:
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| 156 | if not isinstance(s,scantable):
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| 157 | msg = "Please give a list of scantables"
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| 158 | if rcParams['verbose']:
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| 159 | print msg
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| 160 | return
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| 161 | else:
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| 162 | raise TypeError(msg)
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| 163 | s = scantable(stm._merge(lst))
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| 164 | s._add_history("merge", varlist)
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| 165 | print_log()
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| 166 | return s
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| 167 |
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