source: trunk/external-alma/components/SpectralComponents/SpectralElement.h@ 3066

Last change on this file since 3066 was 3029, checked in by Kana Sugimoto, 10 years ago

New Development: Yes

JIRA Issue: Yes (CAS-6929)

Ready for Test: Yes

Interface Changes: No

What Interface Changed:

Test Programs:

Put in Release Notes: No

Module(s): asap as a whole

Description: committing Darrell's changes to make asap work with merged casacore.


File size: 5.6 KB
Line 
1//# SpectralElement.h: Describes (a set of related) spectral lines
2//# Copyright (C) 2001,2003,2004
3//# Associated Universities, Inc. Washington DC, USA.
4//#
5//# This library is free software; you can redistribute it and/or modify it
6//# under the terms of the GNU Library General Public License as published by
7//# the Free Software Foundation; either version 2 of the License, or (at your
8//# option) any later version.
9//#
10//# This library is distributed in the hope that it will be useful, but WITHOUT
11//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
12//# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Library General Public
13//# License for more details.
14//#
15//# You should have received a copy of the GNU Library General Public License
16//# along with this library; if not, write to the Free Software Foundation,
17//# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
18//#
19//# Correspondence concerning AIPS++ should be addressed as follows:
20//# Internet email: aips2-request@nrao.edu.
21//# Postal address: AIPS++ Project Office
22//# National Radio Astronomy Observatory
23//# 520 Edgemont Road
24//# Charlottesville, VA 22903-2475 USA
25//#
26//#
27//# $Id: SpectralElement.h 21465 2014-06-19 05:56:56Z gervandiepen $
28
29#ifndef COMPONENTS_SPECTRALELEMENT_H
30#define COMPONENTS_SPECTRALELEMENT_H
31
32#include <memory>
33#include <casa/aips.h>
34#include <casa/Arrays/Vector.h>
35#include <casa/Containers/RecordInterface.h>
36
37namespace casa { //# NAMESPACE CASA - BEGIN
38
39template <class T, class U> class Function;
40
41// <summary>
42// Describes (a set of related) spectral lines
43// </summary>
44
45// <use visibility=export>
46
47// <reviewed reviewer="" date="yyyy/mm/dd" tests="tSpectralFit" demos="">
48// </reviewed>
49
50// <prerequisite>
51// <li> <linkto module=Functionals>Functionals</linkto> module
52// </prerequisite>
53//
54// <etymology>
55// From spectral line and element
56// </etymology>
57//
58// <synopsis>
59// The SpectralElement class is the abstract base class for classes
60// describing spectral components (Gaussian, Polynonomial, etc).
61//
62// The element can be used in the
63// <linkto class=SpectralFit>SpectralFit</linkto> class and in the
64// <linkto class=SpectralEstimate>SpectralEstimate</linkto> class.
65//
66// </synopsis>
67//
68// <example>
69// </example>
70//
71// <motivation>
72// To have a container for fitting of spectral profiles to an observed spectrum
73// </motivation>
74//
75// <todo asof="2001/02/04">
76// <li> add more profile types
77// </todo>
78
79class SpectralElement {
80public:
81
82 //# Enumerations
83 // Supported spectral components
84 enum Types {
85 // A gaussian profile
86 GAUSSIAN,
87 // A polynomial baseline
88 POLYNOMIAL,
89 // Any compiled string functional
90 COMPILED,
91 // Gaussian multiplet
92 GMULTIPLET,
93 // Lorentzian
94 LORENTZIAN,
95 // power log polynomial
96 POWERLOGPOLY,
97 // log transformed polynomial
98 LOGTRANSPOLY,
99 N_Types
100 };
101
102 virtual ~SpectralElement();
103
104 virtual SpectralElement* clone() const = 0;
105
106 // Evaluate the value of the element at x
107 virtual Double operator()(const Double x) const;
108
109 Bool operator==(const SpectralElement& other) const;
110
111 // Get parameter n
112 // <thrown>
113 // <li> AipsError if illegal n
114 // </thrown>
115 virtual Double operator[](const uInt n) const;
116
117 // Get all the types available as String and codes, and number available
118 static const String* allTypes(Int &nall,
119 const SpectralElement::Types *&typ);
120 // Get a string from the type
121 static const String &fromType(SpectralElement::Types tp);
122 // Get a type from a (non-case sensitive; minimum match) String
123 static Bool toType(SpectralElement::Types &tp,
124 const String &typName);
125
126 // Get type of this element
127 SpectralElement::Types getType() const { return _type; }
128
129 // Get all parameters
130 void get(Vector<Double>& params) const;
131
132 Vector<Double> get() const;
133
134 // Get error estimates of parameters
135 void getError(Vector<Double> &err) const;
136 Vector<Double> getError() const;
137
138 // Get the order (i.e. the number of parameters)
139 uInt getOrder() const { return _params.size(); };
140
141 // Set the error fields
142 virtual void setError(const Vector<Double> &err);
143
144 // Set fixed parameters (True) or unset them (False)
145 // <thrown>
146 // <li> AipsError if incorrect number of parameters (e.g. not 3 for GAUSSIAN)
147 // </thrown>
148
149 // Fix/unfix all in one go
150 virtual void fix(const Vector<Bool>& fix);
151
152 // Get the fix state[s]
153 const Vector<Bool> &fixed() const;
154
155 // Save to a record.
156 virtual Bool toRecord(RecordInterface& out) const;
157
158 // set parameters
159 virtual void set(const Vector<Double>& params);
160
161protected:
162
163 SpectralElement() {}
164
165 SpectralElement(Types type, const Vector<Double>& parms=Vector<Double>(0));
166
167 SpectralElement(const SpectralElement& other);
168
169 SpectralElement &operator=(const SpectralElement& other);
170
171 void _set(const Vector<Double>& params);
172
173 void _setType(const Types type);
174
175 void _setFunction(const SHARED_PTR<Function<Double, Double> >& f);
176
177 virtual SHARED_PTR<Function<Double, Double> > _getFunction() const {
178 return _function;
179 }
180
181private:
182 //#Data
183 // type of element
184 Types _type;
185
186 // The parameters of the function. I.e. the polynomial coefficients;
187 // amplitude, center and sigma of a Gaussian.
188 Vector<Double> _params;
189 // The errors of the parameters
190 Vector<Double> _errors;
191 // The indication if the parameter has to be fixed (True) or solved (False).
192 // Solved is the default.
193 Vector<Bool> _fixed;
194
195 SHARED_PTR<Function<Double, Double> > _function;
196
197};
198
199ostream &operator<<(ostream& os, const SpectralElement& elem);
200
201Bool near(const SpectralElement& s1, const SpectralElement& s2, const Double tol);
202
203Bool nearAbs(const SpectralElement& s1, const SpectralElement& s2, const Double tol);
204
205
206} //# NAMESPACE CASA - END
207
208#endif
209
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