[2980] | 1 | //# SpectralElement.h: Describes (a set of related) spectral lines |
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| 2 | //# Copyright (C) 2001,2003,2004 |
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| 3 | //# Associated Universities, Inc. Washington DC, USA. |
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| 4 | //# |
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| 5 | //# This library is free software; you can redistribute it and/or modify it |
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| 6 | //# under the terms of the GNU Library General Public License as published by |
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| 7 | //# the Free Software Foundation; either version 2 of the License, or (at your |
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| 8 | //# option) any later version. |
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| 9 | //# |
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| 10 | //# This library is distributed in the hope that it will be useful, but WITHOUT |
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| 11 | //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
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| 12 | //# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Library General Public |
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| 13 | //# License for more details. |
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| 14 | //# |
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| 15 | //# You should have received a copy of the GNU Library General Public License |
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| 16 | //# along with this library; if not, write to the Free Software Foundation, |
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| 17 | //# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA. |
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| 18 | //# |
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| 19 | //# Correspondence concerning AIPS++ should be addressed as follows: |
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| 20 | //# Internet email: aips2-request@nrao.edu. |
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| 21 | //# Postal address: AIPS++ Project Office |
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| 22 | //# National Radio Astronomy Observatory |
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| 23 | //# 520 Edgemont Road |
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| 24 | //# Charlottesville, VA 22903-2475 USA |
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| 25 | //# |
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| 26 | //# |
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| 27 | //# $Id: SpectralElement.h 21465 2014-06-19 05:56:56Z gervandiepen $ |
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| 28 | |
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| 29 | #ifndef COMPONENTS_SPECTRALELEMENT_H |
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| 30 | #define COMPONENTS_SPECTRALELEMENT_H |
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| 31 | |
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[3029] | 32 | #include <memory> |
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[2980] | 33 | #include <casa/aips.h> |
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| 34 | #include <casa/Arrays/Vector.h> |
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| 35 | #include <casa/Containers/RecordInterface.h> |
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| 36 | |
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[3106] | 37 | using namespace casacore; |
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| 38 | |
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[2980] | 39 | namespace casa { //# NAMESPACE CASA - BEGIN |
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| 40 | |
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| 41 | template <class T, class U> class Function; |
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| 42 | |
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| 43 | // <summary> |
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| 44 | // Describes (a set of related) spectral lines |
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| 45 | // </summary> |
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| 46 | |
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| 47 | // <use visibility=export> |
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| 48 | |
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| 49 | // <reviewed reviewer="" date="yyyy/mm/dd" tests="tSpectralFit" demos=""> |
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| 50 | // </reviewed> |
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| 51 | |
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| 52 | // <prerequisite> |
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| 53 | // <li> <linkto module=Functionals>Functionals</linkto> module |
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| 54 | // </prerequisite> |
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| 55 | // |
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| 56 | // <etymology> |
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| 57 | // From spectral line and element |
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| 58 | // </etymology> |
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| 59 | // |
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| 60 | // <synopsis> |
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| 61 | // The SpectralElement class is the abstract base class for classes |
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| 62 | // describing spectral components (Gaussian, Polynonomial, etc). |
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| 63 | // |
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| 64 | // The element can be used in the |
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| 65 | // <linkto class=SpectralFit>SpectralFit</linkto> class and in the |
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| 66 | // <linkto class=SpectralEstimate>SpectralEstimate</linkto> class. |
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| 67 | // |
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| 68 | // </synopsis> |
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| 69 | // |
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| 70 | // <example> |
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| 71 | // </example> |
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| 72 | // |
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| 73 | // <motivation> |
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| 74 | // To have a container for fitting of spectral profiles to an observed spectrum |
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| 75 | // </motivation> |
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| 76 | // |
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| 77 | // <todo asof="2001/02/04"> |
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| 78 | // <li> add more profile types |
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| 79 | // </todo> |
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| 80 | |
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| 81 | class SpectralElement { |
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| 82 | public: |
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| 83 | |
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| 84 | //# Enumerations |
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| 85 | // Supported spectral components |
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| 86 | enum Types { |
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| 87 | // A gaussian profile |
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| 88 | GAUSSIAN, |
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| 89 | // A polynomial baseline |
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| 90 | POLYNOMIAL, |
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| 91 | // Any compiled string functional |
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| 92 | COMPILED, |
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| 93 | // Gaussian multiplet |
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| 94 | GMULTIPLET, |
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| 95 | // Lorentzian |
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| 96 | LORENTZIAN, |
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| 97 | // power log polynomial |
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| 98 | POWERLOGPOLY, |
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| 99 | // log transformed polynomial |
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| 100 | LOGTRANSPOLY, |
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| 101 | N_Types |
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| 102 | }; |
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| 103 | |
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| 104 | virtual ~SpectralElement(); |
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| 105 | |
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| 106 | virtual SpectralElement* clone() const = 0; |
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| 107 | |
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| 108 | // Evaluate the value of the element at x |
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[3106] | 109 | virtual casacore::Double operator()(const casacore::Double x) const; |
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[2980] | 110 | |
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[3106] | 111 | casacore::Bool operator==(const SpectralElement& other) const; |
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[2980] | 112 | |
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| 113 | // Get parameter n |
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| 114 | // <thrown> |
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| 115 | // <li> AipsError if illegal n |
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| 116 | // </thrown> |
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[3106] | 117 | virtual casacore::Double operator[](const uInt n) const; |
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[2980] | 118 | |
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[3106] | 119 | // Get all the types available as casacore::String and codes, and number available |
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| 120 | static const casacore::String* allTypes(Int &nall, |
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[2980] | 121 | const SpectralElement::Types *&typ); |
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| 122 | // Get a string from the type |
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[3106] | 123 | static const casacore::String &fromType(SpectralElement::Types tp); |
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| 124 | // Get a type from a (non-case sensitive; minimum match) casacore::String |
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| 125 | static casacore::Bool toType(SpectralElement::Types &tp, |
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| 126 | const casacore::String &typName); |
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[2980] | 127 | |
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| 128 | // Get type of this element |
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| 129 | SpectralElement::Types getType() const { return _type; } |
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| 130 | |
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| 131 | // Get all parameters |
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[3106] | 132 | void get(casacore::Vector<casacore::Double>& params) const; |
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[2980] | 133 | |
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[3106] | 134 | casacore::Vector<casacore::Double> get() const; |
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[2980] | 135 | |
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| 136 | // Get error estimates of parameters |
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[3106] | 137 | void getError(casacore::Vector<casacore::Double> &err) const; |
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| 138 | casacore::Vector<casacore::Double> getError() const; |
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[2980] | 139 | |
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| 140 | // Get the order (i.e. the number of parameters) |
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| 141 | uInt getOrder() const { return _params.size(); }; |
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| 142 | |
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| 143 | // Set the error fields |
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[3106] | 144 | virtual void setError(const casacore::Vector<casacore::Double> &err); |
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[2980] | 145 | |
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| 146 | // Set fixed parameters (True) or unset them (False) |
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| 147 | // <thrown> |
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| 148 | // <li> AipsError if incorrect number of parameters (e.g. not 3 for GAUSSIAN) |
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| 149 | // </thrown> |
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| 150 | |
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| 151 | // Fix/unfix all in one go |
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[3106] | 152 | virtual void fix(const casacore::Vector<casacore::Bool>& fix); |
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[2980] | 153 | |
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| 154 | // Get the fix state[s] |
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[3106] | 155 | const casacore::Vector<casacore::Bool> &fixed() const; |
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[2980] | 156 | |
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| 157 | // Save to a record. |
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[3106] | 158 | virtual casacore::Bool toRecord(RecordInterface& out) const; |
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[2980] | 159 | |
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| 160 | // set parameters |
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[3106] | 161 | virtual void set(const casacore::Vector<casacore::Double>& params); |
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[2980] | 162 | |
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| 163 | protected: |
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| 164 | |
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| 165 | SpectralElement() {} |
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| 166 | |
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[3106] | 167 | SpectralElement(Types type, const casacore::Vector<casacore::Double>& parms=casacore::Vector<casacore::Double>(0)); |
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[2980] | 168 | |
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| 169 | SpectralElement(const SpectralElement& other); |
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| 170 | |
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| 171 | SpectralElement &operator=(const SpectralElement& other); |
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| 172 | |
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[3106] | 173 | void _set(const casacore::Vector<casacore::Double>& params); |
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[2980] | 174 | |
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| 175 | void _setType(const Types type); |
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| 176 | |
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[3106] | 177 | void _setFunction(const SHARED_PTR<Function<casacore::Double, casacore::Double> >& f); |
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[2980] | 178 | |
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[3106] | 179 | virtual SHARED_PTR<Function<casacore::Double, casacore::Double> > _getFunction() const { |
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[2980] | 180 | return _function; |
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| 181 | } |
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| 182 | |
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| 183 | private: |
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| 184 | //#Data |
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| 185 | // type of element |
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| 186 | Types _type; |
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| 187 | |
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| 188 | // The parameters of the function. I.e. the polynomial coefficients; |
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| 189 | // amplitude, center and sigma of a Gaussian. |
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[3106] | 190 | casacore::Vector<casacore::Double> _params; |
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[2980] | 191 | // The errors of the parameters |
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[3106] | 192 | casacore::Vector<casacore::Double> _errors; |
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[2980] | 193 | // The indication if the parameter has to be fixed (True) or solved (False). |
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| 194 | // Solved is the default. |
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[3106] | 195 | casacore::Vector<casacore::Bool> _fixed; |
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[2980] | 196 | |
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[3106] | 197 | SHARED_PTR<Function<casacore::Double, casacore::Double> > _function; |
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[2980] | 198 | |
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| 199 | }; |
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| 200 | |
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| 201 | ostream &operator<<(ostream& os, const SpectralElement& elem); |
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| 202 | |
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[3106] | 203 | casacore::Bool near(const SpectralElement& s1, const SpectralElement& s2, const casacore::Double tol); |
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[2980] | 204 | |
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[3106] | 205 | casacore::Bool nearAbs(const SpectralElement& s1, const SpectralElement& s2, const casacore::Double tol); |
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[2980] | 206 | |
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| 207 | |
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| 208 | } //# NAMESPACE CASA - END |
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| 209 | |
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| 210 | #endif |
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| 211 | |
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