source: trunk/external-alma/atnf/PKSIO/NRODataset.cc@ 2782

Last change on this file since 2782 was 2782, checked in by Takeshi Nakazato, 12 years ago

New Development: No

JIRA Issue: No

Ready for Test: Yes

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: List test programs

Put in Release Notes: Yes/No

Module(s): Module Names change impacts.

Description: Describe your changes here...

Refactoring NRO filler.
File size: 26.4 KB
Line 
1//#---------------------------------------------------------------------------
2//# NRODataset.cc: Base class for NRO dataset.
3//#---------------------------------------------------------------------------
4//# Copyright (C) 2000-2006
5//# Associated Universities, Inc. Washington DC, USA.
6//#
7//# This library is free software; you can redistribute it and/or modify it
8//# under the terms of the GNU Library General Public License as published by
9//# the Free Software Foundation; either version 2 of the License, or (at your
10//# option) any later version.
11//#
12//# This library is distributed in the hope that it will be useful, but WITHOUT
13//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
14//# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Library General Public
15//# License for more details.
16//#
17//# You should have received a copy of the GNU Library General Public License
18//# along with this library; if not, write to the Free Software Foundation,
19//# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
20//#
21//# Correspondence concerning AIPS++ should be addressed as follows:
22//# Internet email: aips2-request@nrao.edu.
23//# Postal address: AIPS++ Project Office
24//# National Radio Astronomy Observatory
25//# 520 Edgemont Road
26//# Charlottesville, VA 22903-2475 USA
27//#
28//# $Id$
29//#---------------------------------------------------------------------------
30//# Original: 2009/02/27, Takeshi Nakazato, NAOJ
31//#---------------------------------------------------------------------------
32
33#include <atnf/PKSIO/NRODataset.h>
34#include <casa/OS/Time.h>
35#include <casa/Utilities/Regex.h>
36#include <scimath/Mathematics/InterpolateArray1D.h>
37
38#include <measures/Measures/MeasConvert.h>
39#include <measures/Measures/MCFrequency.h>
40#include <measures/Measures/MFrequency.h>
41#include <measures/Measures/MPosition.h>
42#include <measures/Measures/MEpoch.h>
43#include <measures/Measures/MDirection.h>
44
45#include <math.h>
46#include <fstream>
47
48//#include <casa/namespace.h>
49
50using namespace std ;
51
52//
53// NRODataset
54//
55// Base class for NRO dataset.
56//
57
58// constructor
59NRODataset::NRODataset( string name )
60 : scanNum_(0),
61 rowNum_(0),
62 scanLen_(0),
63 dataLen_(0),
64 dataid_(-1),
65 filename_(name),
66 fp_(NULL),
67 same_(-1),
68 frec_()
69{}
70
71// destructor
72NRODataset::~NRODataset()
73{
74 // release memory
75 releaseRecord() ;
76
77 // close file
78 close() ;
79}
80
81// data initialization
82void NRODataset::initialize()
83{
84 LogIO os( LogOrigin( "NRODataset", "initialize()", WHERE ) ) ;
85
86 int arymax = arrayMax() ;
87
88 // check endian
89 open() ;
90 fseek( fp_, 144, SEEK_SET ) ;
91 int tmp ;
92 if( fread( &tmp, 1, sizeof(int), fp_ ) != sizeof(int) ) {
93 os << LogIO::SEVERE << "Error while checking endian of the file. " << LogIO::EXCEPTION ;
94 return ;
95 }
96 if ( ( 0 < tmp ) && ( tmp <= arymax ) ) {
97 same_ = 1 ;
98 os << LogIO::NORMAL << "same endian " << LogIO::POST ;
99 }
100 else {
101 same_ = 0 ;
102 os << LogIO::NORMAL << "different endian " << LogIO::POST ;
103 }
104 fseek( fp_, 0, SEEK_SET ) ;
105
106 // common part of calculation of data size and memory allocation
107 RX.resize( arymax ) ;
108 HPBW.resize( arymax ) ;
109 EFFA.resize( arymax ) ;
110 EFFB.resize( arymax ) ;
111 EFFL.resize( arymax ) ;
112 EFSS.resize( arymax ) ;
113 GAIN.resize( arymax ) ;
114 HORN.resize( arymax ) ;
115 POLTP.resize( arymax ) ;
116 POLDR.resize( arymax ) ;
117 POLAN.resize( arymax ) ;
118 DFRQ.resize( arymax ) ;
119 SIDBD.resize( arymax ) ;
120 REFN.resize( arymax ) ;
121 IPINT.resize( arymax ) ;
122 MULTN.resize( arymax ) ;
123 MLTSCF.resize( arymax ) ;
124 LAGWIND.resize( arymax ) ;
125 BEBW.resize( arymax ) ;
126 BERES.resize( arymax ) ;
127 CHWID.resize( arymax ) ;
128 ARRY.resize( arymax ) ;
129 NFCAL.resize( arymax ) ;
130 F0CAL.resize( arymax ) ;
131 FQCAL.resize( arymax ) ;
132 CHCAL.resize( arymax ) ;
133 CWCAL.resize( arymax ) ;
134 DSBFC.resize( arymax ) ;
135
136 for ( int i = 0 ; i < arymax ; i++ ) {
137 FQCAL[i].resize( 10 ) ;
138 CHCAL[i].resize( 10 ) ;
139 CWCAL[i].resize( 10 ) ;
140 }
141
142 datasize_ = sizeof( char ) * 8 // LOFIL
143 + sizeof( char ) * 8 // VER
144 + sizeof( char ) * 16 // GROUP
145 + sizeof( char ) * 16 // PROJ
146 + sizeof( char ) * 24 // SCHED
147 + sizeof( char ) * 40 // OBSVR
148 + sizeof( char ) * 16 // LOSTM
149 + sizeof( char ) * 16 // LOETM
150 + sizeof( int ) * 2 // ARYNM, NSCAN
151 + sizeof( char ) * 120 // TITLE
152 + sizeof( char ) * 16 // OBJ
153 + sizeof( char ) * 8 // EPOCH
154 + sizeof( double ) * 4 // RA0, DEC0, GLNG0, GLAT0
155 + sizeof( int ) * 2 // NCALB, SCNCD
156 + sizeof( char ) * 120 // SCMOD
157 + sizeof( double ) // URVEL
158 + sizeof( char ) * 4 // VREF
159 + sizeof( char ) * 4 // VDEF
160 + sizeof( char ) * 8 // SWMOD
161 + sizeof( double ) * 8 // FRQSW, DBEAM, MLTOF, CMTQ, CMTE, CMTSOM, CMTNODE, CMTI
162 + sizeof( char ) * 24 // CMTTM
163 + sizeof( double ) * 6 // SBDX, SBDY, SBDZ1, SBDZ2, DAZP, DELP
164 + sizeof( int ) * 4 // CHBIND, NUMCH, CHMIN, CHMAX
165 + sizeof( double ) * 3 // ALCTM, IPTIM, PA
166 + sizeof( int ) * 3 // SCNLEN, SBIND, IBIT
167 + sizeof( char ) * 8 ; // SITE
168
169 // NRODataRecord
170 record_ = new NRODataRecord() ;
171 record_->LDATA = NULL ;
172
173 // reference frequency
174 refFreq_.resize( arymax, 0.0 ) ;
175}
176
177// fill data header
178int NRODataset::fillHeader()
179{
180 LogIO os( LogOrigin( "NRODataset", "fillHeader()", WHERE ) ) ;
181
182 // open file
183 if ( open() ) {
184 os << LogIO::SEVERE << "Error opening file " << filename_ << "." << LogIO::EXCEPTION ;
185 return -1 ;
186 }
187
188 // fill
189 int status = fillHeader( same_ ) ;
190
191 if ( status != 0 ) {
192 os << LogIO::SEVERE << "Error while reading header " << filename_ << "." << LogIO::EXCEPTION ;
193 return status ;
194 }
195
196 //scanNum_ = NSCAN + 1 ; // includes ZERO scan
197 scanLen_ = SCNLEN ;
198 dataLen_ = scanLen_ - SCAN_HEADER_SIZE ;
199 scanNum_ = getScanNum();
200 rowNum_ = scanNum_ * ARYNM ;
201 chmax_ = (int) ( dataLen_ * 8 / IBIT ) ;
202 record_->LDATA = new char[dataLen_] ;
203
204 initArray();
205
206 show() ;
207
208 return status ;
209}
210
211void NRODataset::convertEndian( int &value )
212{
213 char volatile *first = reinterpret_cast<char volatile *>( &value ) ;
214 char volatile *last = first + sizeof( int ) ;
215 std::reverse( first, last ) ;
216}
217
218void NRODataset::convertEndian( float &value )
219{
220 char volatile *first = reinterpret_cast<char volatile *>( &value ) ;
221 char volatile *last = first + sizeof( float ) ;
222 std::reverse( first, last ) ;
223}
224
225void NRODataset::convertEndian( double &value )
226{
227 char volatile *first = reinterpret_cast<char volatile *>( &value ) ;
228 char volatile *last = first + sizeof( double ) ;
229 std::reverse( first, last ) ;
230}
231
232int NRODataset::readHeader( char *v, int size )
233{
234 if ( (int)( fread( v, 1, size, fp_ ) ) != size ) {
235 return -1 ;
236 }
237 return 0 ;
238}
239
240int NRODataset::readHeader( int &v, int b )
241{
242 if ( fread( &v, 1, sizeof(int), fp_ ) != sizeof(int) ) {
243 return -1 ;
244 }
245
246 if ( b == 0 )
247 convertEndian( v ) ;
248
249 return 0 ;
250}
251
252int NRODataset::readHeader( float &v, int b )
253{
254 if ( fread( &v, 1, sizeof(float), fp_ ) != sizeof(float) ) {
255 return -1 ;
256 }
257
258 if ( b == 0 )
259 convertEndian( v ) ;
260
261 return 0 ;
262}
263
264int NRODataset::readHeader( double &v, int b )
265{
266 if ( fread( &v, 1, sizeof(double), fp_ ) != sizeof(double) ) {
267 return -1 ;
268 }
269
270 if ( b == 0 )
271 convertEndian( v ) ;
272
273 return 0 ;
274}
275
276void NRODataset::convertEndian( NRODataRecord &r )
277{
278 convertEndian( r.ISCAN ) ;
279 convertEndian( r.DSCX ) ;
280 convertEndian( r.DSCY ) ;
281 convertEndian( r.SCX ) ;
282 convertEndian( r.SCY ) ;
283 convertEndian( r.PAZ ) ;
284 convertEndian( r.PEL ) ;
285 convertEndian( r.RAZ ) ;
286 convertEndian( r.REL ) ;
287 convertEndian( r.XX ) ;
288 convertEndian( r.YY ) ;
289 convertEndian( r.TEMP ) ;
290 convertEndian( r.PATM ) ;
291 convertEndian( r.PH2O ) ;
292 convertEndian( r.VWIND ) ;
293 convertEndian( r.DWIND ) ;
294 convertEndian( r.TAU ) ;
295 convertEndian( r.TSYS ) ;
296 convertEndian( r.BATM ) ;
297 convertEndian( r.LINE ) ;
298 for ( int i = 0 ; i < 4 ; i++ )
299 convertEndian( r.IDMY1[i] ) ;
300 convertEndian( r.VRAD ) ;
301 convertEndian( r.FREQ0 ) ;
302 convertEndian( r.FQTRK ) ;
303 convertEndian( r.FQIF1 ) ;
304 convertEndian( r.ALCV ) ;
305 for ( int i = 0 ; i < 2 ; i++ )
306 for ( int j = 0 ; j < 2 ; j++ )
307 convertEndian( r.OFFCD[i][j] ) ;
308 convertEndian( r.IDMY0 ) ;
309 convertEndian( r.IDMY2 ) ;
310 convertEndian( r.DPFRQ ) ;
311 convertEndian( r.SFCTR ) ;
312 convertEndian( r.ADOFF ) ;
313}
314
315void NRODataset::releaseRecord()
316{
317 if ( !record_.null() ) {
318 record_ = NULL ;
319 }
320 dataid_ = -1 ;
321}
322
323// Get specified scan
324NRODataRecord *NRODataset::getRecord( int i )
325{
326 // DEBUG
327 //cout << "NRODataset::getRecord() Start " << i << endl ;
328 //
329 if ( i < 0 || i >= rowNum_ ) {
330 LogIO os( LogOrigin( "NRODataset", "getRecord()", WHERE ) ) ;
331 //cerr << "NRODataset::getRecord() data index out of range." << endl ;
332 os << LogIO::SEVERE << "data index " << i << " out of range. return NULL." << LogIO::POST ;
333 return NULL ;
334 }
335
336 if ( i == dataid_ ) {
337 return &(*record_) ;
338 }
339
340 // DEBUG
341 //cout << "NRODataset::getData() Get new dataset" << endl ;
342 //
343 // read data
344 int status = fillRecord( i ) ;
345 if ( status == 0 ) {
346 dataid_ = i ;
347 }
348 else {
349 LogIO os( LogOrigin( "NRODataset", "getRecord()", WHERE ) ) ;
350 //cerr << "NRODataset::getRecord() error while reading data " << i << endl ;
351 os << LogIO::SEVERE << "error while reading data " << i << ". return NULL." << LogIO::EXCEPTION ;
352 dataid_ = -1 ;
353 return NULL ;
354 }
355
356 return &(*record_) ;
357}
358
359int NRODataset::fillRecord( int i )
360{
361 int status = 0 ;
362
363 status = open() ;
364 if ( status != 0 )
365 return status ;
366
367
368 // fill NRODataset
369 long offset = getDataSize() + scanLen_ * i ;
370 // DEBUG
371 //cout << "NRODataset::fillRecord() offset (header) = " << offset << endl ;
372 //cout << "NRODataset::fillRecord() sizeof(NRODataRecord) = " << sizeof( NRODataRecord ) << " byte" << endl ;
373 fseek( fp_, offset, SEEK_SET ) ;
374 if ( (int)fread( &(*record_), 1, SCAN_HEADER_SIZE, fp_ ) != SCAN_HEADER_SIZE ) {
375 //cerr << "Failed to read scan header: " << i << endl ;
376 LogIO os( LogOrigin( "NRODataset", "fillRecord()", WHERE ) ) ;
377 os << LogIO::SEVERE << "Failed to read scan header for " << i << "th row." << LogIO::POST ;
378 return -1 ;
379 }
380 if ( (int)fread( &(*record_->LDATA), 1, dataLen_, fp_ ) != dataLen_ ) {
381 //cerr << "Failed to read spectral data: " << i << endl ;
382 LogIO os( LogOrigin( "NRODataset", "fillRecord()", WHERE ) ) ;
383 os << LogIO::SEVERE << "Failed to read spectral data for " << i << "th row." << LogIO::POST ;
384 return -1 ;
385 }
386
387 if ( same_ == 0 ) {
388 convertEndian( *record_ ) ;
389 }
390
391 // DWIND unit conversion (deg -> rad)
392 record_->DWIND = record_->DWIND * M_PI / 180.0 ;
393
394 return status ;
395}
396
397// open
398int NRODataset::open()
399{
400 int status = 0 ;
401
402 if ( fp_ == NULL ) {
403 if ( (fp_ = fopen( filename_.c_str(), "rb" )) == NULL )
404 status = -1 ;
405 else
406 status = 0 ;
407 }
408
409 return status ;
410}
411
412// close
413void NRODataset::close()
414{
415 // DEBUG
416 //cout << "NRODataset::close() close file" << endl ;
417 //
418 if ( fp_ != NULL )
419 fclose( fp_ ) ;
420 fp_ = NULL ;
421}
422
423// get spectrum
424vector< vector<double> > NRODataset::getSpectrum()
425{
426 vector< vector<double> > spec(rowNum_);
427
428 for ( int i = 0 ; i < rowNum_ ; i++ ) {
429 spec[i] = getSpectrum( i ) ;
430 }
431
432 return spec ;
433}
434
435vector<double> NRODataset::getSpectrum( int i )
436{
437 // DEBUG
438 //cout << "NRODataset::getSpectrum() start process (" << i << ")" << endl ;
439 //
440 // size of spectrum is not chmax_ but dataset_->getNCH() after binding
441 const int nchan = NUMCH ;
442 vector<double> spec( chmax_ ) ; // spectrum "before" binding
443 // DEBUG
444 //cout << "NRODataset::getSpectrum() nchan = " << nchan << " chmax_ = " << chmax_ << endl ;
445 //
446
447 const NRODataRecord *record = getRecord( i ) ;
448
449 const int bit = IBIT ; // fixed to 12 bit
450 double scale = record->SFCTR ;
451 // DEBUG
452 //cout << "NRODataset::getSpectrum() scale = " << scale << endl ;
453 //
454 double offset = record->ADOFF ;
455 // DEBUG
456 //cout << "NRODataset::getSpectrum() offset = " << offset << endl ;
457 //
458 if ( ( scale == 0.0 ) && ( offset == 0.0 ) ) {
459 //cerr << "NRODataset::getSpectrum() zero spectrum (" << i << ")" << endl ;
460 LogIO os( LogOrigin("NRODataset","getSpectrum",WHERE) ) ;
461 os << LogIO::WARN << "zero spectrum for row " << i << LogIO::POST ;
462 if ( spec.size() != (unsigned int)nchan )
463 spec.resize( nchan ) ;
464 for ( vector<double>::iterator i = spec.begin() ;
465 i != spec.end() ; i++ )
466 *i = 0.0 ;
467 return spec ;
468 }
469 unsigned char *cdata = (unsigned char *)&(*record->LDATA) ;
470 vector<double> mscale = MLTSCF ;
471 double dscale = mscale[getIndex( i )] ;
472 int cbind = CHBIND ;
473 int chmin = CHMIN ;
474
475 // char -> int -> double
476 vector<double>::iterator iter = spec.begin() ;
477
478 static const int shift_right[] = {
479 4, 0
480 };
481 static const int start_pos[] = {
482 0, 1
483 };
484 static const int incr[] = {
485 0, 3
486 };
487 int j = 0 ;
488 for ( int i = 0 ; i < chmax_ ; i++ ) {
489 // char -> int
490 int ivalue = 0 ;
491 if ( bit == 12 ) { // 12 bit qunatization
492 const int ialt = i & 1 ;
493 const int idx = j + start_pos[ialt];
494 const unsigned tmp = unsigned(cdata[idx]) << 8 | cdata[idx + 1];
495 ivalue = int((tmp >> shift_right[ialt]) & 0xFFF);
496 j += incr[ialt];
497 }
498
499 if ( ( ivalue < 0 ) || ( ivalue > 4096 ) ) {
500 //cerr << "NRODataset::getSpectrum() ispec[" << i << "] is out of range" << endl ;
501 LogIO os( LogOrigin( "NRODataset", "getSpectrum", WHERE ) ) ;
502 os << LogIO::SEVERE << "ivalue for row " << i << " is out of range" << LogIO::EXCEPTION ;
503 if ( spec.size() != (unsigned int)nchan )
504 spec.resize( nchan ) ;
505 for ( vector<double>::iterator i = spec.begin() ;
506 i != spec.end() ; i++ )
507 *i = 0.0 ;
508 return spec ;
509 }
510 // DEBUG
511 //cout << "NRODataset::getSpectrum() ispec[" << i << "] = " << ispec[i] << endl ;
512 //
513
514 // int -> double
515 *iter = (double)( ivalue * scale + offset ) * dscale ;
516 // DEBUG
517 //cout << "NRODataset::getSpectrum() spec[" << i << "] = " << *iter << endl ;
518 //
519 iter++ ;
520 }
521
522 // channel binding if necessary
523 if ( cbind != 1 ) {
524 iter = spec.begin() ;
525 advance( iter, chmin ) ;
526 vector<double>::iterator iter2 = spec.begin() ;
527 for ( int i = 0 ; i < nchan ; i++ ) {
528 double sum0 = 0 ;
529 double sum1 = 0 ;
530 for ( int j = 0 ; j < cbind ; j++ ) {
531 sum0 += *iter ;
532 sum1 += 1.0 ;
533 iter++ ;
534 }
535 *iter2 = sum0 / sum1 ;
536 iter2++ ;
537 // DEBUG
538 //cout << "NRODataset::getSpectrum() bspec[" << i << "] = " << bspec[i] << endl ;
539 //
540 }
541 spec.resize( nchan ) ;
542 }
543
544 // DEBUG
545 //cout << "NRODataset::getSpectrum() end process" << endl ;
546 //
547
548 return spec ;
549}
550
551int NRODataset::getIndex( int irow )
552{
553 // DEBUG
554 //cout << "NRODataset::getIndex() start" << endl ;
555 //
556 const NRODataRecord *record = getRecord( irow ) ;
557
558 const string str = record->ARRYT ;
559 // DEBUG
560 //cout << "NRODataset::getIndex() str = " << str << endl ;
561 //
562 int index = (int)getArrayId(str);
563 // DEBUG
564 //cout << "NRODataset::getIndex() irow = " << irow << "str = " << str << " index = " << index << endl ;
565 //
566
567 // DEBUG
568 //cout << "NRODataset::getIndex() end" << endl ;
569 //
570 return index ;
571}
572
573int NRODataset::getPolarizationNum()
574{
575 // DEBUG
576 //cout << "NRODataset::getPolarizationNum() start process" << endl ;
577 //
578 int npol = 1;
579 Regex reRx2("(.*V|H20ch2)$");
580 Regex reRx1("(.*H|H20ch1)$");
581 Bool match1 = false;
582 Bool match2 = false;
583 for (int i = 0; i < arrayMax(); i++) {
584 //cout << "RX[" << i << "]=" << RX[i] << endl;
585 if (!match1) {
586 match1 = (reRx1.match(RX[i].c_str(), RX[i].size()) != String::npos);
587 }
588 if (!match2) {
589 match2 = (reRx2.match(RX[i].c_str(), RX[i].size()) != String::npos);
590 }
591 }
592
593 if (match1 && match2)
594 npol = 2;
595
596 //cout << "npol = " << npol << endl;
597
598 // DEBUG
599 //cout << "NRODataset::getPolarizationNum() end process" << endl ;
600 //
601
602 return npol ;
603}
604
605vector<double> NRODataset::getStartIntTime()
606{
607 vector<double> times ;
608 for ( int i = 0 ; i < rowNum_ ; i++ ) {
609 times.push_back( getStartIntTime( i ) ) ;
610 }
611 return times ;
612}
613
614double NRODataset::getStartIntTime( int i )
615{
616 const NRODataRecord *record = getRecord( i ) ;
617
618 const char *t = record->LAVST ;
619 return getMJD( t ) ;
620}
621
622double NRODataset::getMJD( const char *time )
623{
624 // TODO: should be checked which time zone the time depends on
625 // 2008/11/14 Takeshi Nakazato
626 string strStartTime( time ) ;
627 string strYear = strStartTime.substr( 0, 4 ) ;
628 string strMonth = strStartTime.substr( 4, 2 ) ;
629 string strDay = strStartTime.substr( 6, 2 ) ;
630 string strHour = strStartTime.substr( 8, 2 ) ;
631 string strMinute = strStartTime.substr( 10, 2 ) ;
632 string strSecond = strStartTime.substr( 12, strStartTime.size() - 12 ) ;
633 unsigned int year = atoi( strYear.c_str() ) ;
634 unsigned int month = atoi( strMonth.c_str() ) ;
635 unsigned int day = atoi( strDay.c_str() ) ;
636 unsigned int hour = atoi( strHour.c_str() ) ;
637 unsigned int minute = atoi( strMinute.c_str() ) ;
638 double second = atof( strSecond.c_str() ) ;
639 Time t( year, month, day, hour, minute, second ) ;
640
641 return t.modifiedJulianDay() ;
642}
643
644double NRODataset::getScanTime( int i )
645{
646 double startTime = getStartIntTime( i ) ;
647 double interval = getIPTIM() / 86400.0 ; // [sec]->[day]
648 return startTime+0.5*interval ;
649}
650
651vector<bool> NRODataset::getIFs()
652{
653 vector<bool> v ;
654 vector< vector<double> > fref ;
655 vector< vector<double> > chcal = CHCAL ;
656 vector<double> f0cal = F0CAL ;
657 vector<double> beres = BERES ;
658 for ( int i = 0 ; i < rowNum_ ; i++ ) {
659 vector<double> f( 4, 0 ) ;
660 uInt index = getIndex( i ) ;
661 f[0] = chcal[index][0] ;
662 f[1] = f0cal[index] ;
663 f[2] = beres[index] ;
664 if ( f[0] != 0. ) {
665 f[1] = f[1] - f[0] * f[2] ;
666 }
667 const NRODataRecord *record = getRecord( i ) ;
668 f[3] = record->FREQ0 ;
669 if ( v.size() == 0 ) {
670 v.push_back( True ) ;
671 fref.push_back( f ) ;
672 }
673 else {
674 bool b = true ;
675 int fsize = fref.size() ;
676 for ( int j = 0 ; j < fsize ; j++ ) {
677 if ( fref[j][1] == f[1] && fref[j][2] == f[2] && fref[j][3] == f[3] ) {
678 b = false ;
679 }
680 }
681 if ( b ) {
682 v.push_back( True ) ;
683 fref.push_back( f ) ;
684 }
685 }
686 }
687
688
689 // DEBUG
690 //cout << "NRODataset::getIFs() number of IF is " << v.size() << endl ;
691 //
692
693 return v ;
694}
695
696vector<double> NRODataset::getFrequencies( int i )
697{
698 // return value
699 // v[0] reference channel
700 // v[1] reference frequency
701 // v[2] frequency increment
702 vector<double> v( 3, 0.0 ) ;
703
704 const NRODataRecord *record = getRecord( i ) ;
705 string arryt = string( record->ARRYT ) ;
706 uInt ib = getArrayId( arryt ) ;
707 string rxname = getRX()[0] ;
708 string key = arryt ;
709 if ( rxname.find("MULT2") != string::npos )
710 key = "BEARS" ;
711
712 if ( frec_.isDefined( key ) ) {
713 // frequency for the array is already calculated
714 Vector<Double> f = frec_.asArrayDouble( key ) ;
715 Double *f_p = f.data() ;
716 for ( int i = 0 ; i < 3 ; i++ )
717 v[i] = (double)(f_p[i]) ;
718 return v ;
719 }
720
721 //int ia = -1 ;
722 bool isAOS = false ;
723 //cout << "NRODataset::getFrequencies() record->ARRYT=" << record->ARRYT << endl ;
724 //cout << "NRODataset::getFrequencies() ib = " << ib << endl ;
725
726 if ( arryt[0] == 'W' || arryt[0] == 'U' || arryt[0] == 'H' )
727 isAOS = true ;
728
729 Bool isUSB ;
730 if ( record->FQIF1 > 0 )
731 isUSB = True ; // USB
732 else
733 isUSB = False ; // LSB
734
735 int ivdef = -1 ;
736 if ( (getVDEF()).compare( 0, 3, "RAD" ) == 0 )
737 ivdef = 0 ;
738 else if ( (getVDEF()).compare( 0, 3, "OPT" ) == 0 )
739 ivdef = 1 ;
740 // DEBUG
741 //cout << "NRODataset::getFrequencies() ivdef = " << ivdef << endl ;
742 //
743 double vel = getURVEL() + record->VRAD ;
744 double cvel = 2.99792458e8 ; // speed of light [m/s]
745 double fq0 = record->FREQ0 ;
746 //double fq0 = record->FQTRK ;
747
748 int ncal = getNFCAL()[ib] ;
749 double cw = 0.0 ;
750 vector<double> fqcal = getFQCAL()[ib] ;
751 vector<double> chcal = getCHCAL()[ib] ;
752 double f0cal = getF0CAL()[ib] ;
753 Vector<Double> freqs( ncal, fq0-f0cal ) ;
754
755 double factor = vel / cvel ;
756 if ( ivdef == 0 )
757 factor = 1.0 / ( 1.0 - factor ) ;
758 for ( int ii = 0 ; ii < ncal ; ii++ ) {
759 freqs[ii] += fqcal[ii] ;
760 if ( ivdef == 0 ) {
761 freqs[ii] = freqs[ii] * factor + record->FQTRK * ( 1.0 - factor ) ;
762 }
763 else if ( ivdef == 1 ) {
764 freqs[ii] = freqs[ii] * ( 1.0 + factor ) - record->FQTRK * factor ;
765 }
766
767 //ofstream ofs("freqs.txt",ios::out|ios::app) ;
768 //ofs << setprecision(16) ;
769 //ofs << i << " " << record->ARRYT << " " << chcal[ii] << " " << freqs[ii] << " " << record->ISCAN << " " << fqcal[ii] << " " << f0cal << " " << record->FQTRK << " " << vel << endl ;
770 //ofs.close() ;
771
772 }
773
774 if ( isAOS ) {
775 // regridding
776 while ( ncal < (int)chcal.size() ) {
777 chcal.pop_back() ;
778 }
779 Vector<Double> xin( chcal ) ;
780 Vector<Double> yin( freqs ) ;
781 int nchan = getNUMCH() ;
782 Vector<Double> xout( nchan ) ;
783 indgen( xout ) ;
784 Vector<Double> yout ;
785 InterpolateArray1D<Double, Double>::interpolate( yout, xout, xin, yin, InterpolateArray1D<Double,Double>::cubic ) ;
786 Double bw = abs( yout[nchan-1] - yout[0] ) ;
787 bw += 0.5 * abs( yout[nchan-1] - yout[nchan-2] + yout[1] - yout[0] ) ;
788 Double dz = bw / (Double) nchan ;
789 if ( yout[0] > yout[1] )
790 dz = - dz ;
791 v[0] = 0 ;
792 v[1] = yout[0] ;
793 v[2] = dz ;
794 }
795 else {
796
797 cw = ( freqs[1] - freqs[0] )
798 / ( chcal[1] - chcal[0] ) ;
799
800 if ( isUSB ) {
801 // channel frequency inversion
802 cw *= -1.0 ;
803 Double tmp = freqs[1] ;
804 freqs[1] = freqs[0] ;
805 freqs[0] = tmp ;
806 }
807
808 v[0] = chcal[0] - 1 ; // 0-base
809 v[1] = freqs[0] ;
810 v[2] = cw ;
811 }
812
813 if ( refFreq_[ib] == 0.0 )
814 refFreq_[ib] = v[1] ;
815
816 // register frequency setting to Record
817 Vector<Double> f( v ) ;
818 frec_.define( key, f ) ;
819
820 return v ;
821}
822
823uInt NRODataset::getArrayId( string type )
824{
825 string sbeamno = type.substr( 1, type.size()-1 ) ;
826 uInt ib = atoi( sbeamno.c_str() ) - 1 ;
827 return ib ;
828}
829
830uInt NRODataset::getSortedArrayId( string type )
831{
832 uInt index = 0;
833 while (arrayNames_[index] != type && index < (uInt)ARYNM)
834 ++index;
835 return index;
836}
837
838void NRODataset::show()
839{
840 LogIO os( LogOrigin( "NRODataset", "show()", WHERE ) ) ;
841
842 os << LogIO::NORMAL << "------------------------------------------------------------" << endl ;
843 os << LogIO::NORMAL << "Number of scan = " << scanNum_ << endl ;
844 os << LogIO::NORMAL << "Number of data record = " << rowNum_ << endl ;
845 os << LogIO::NORMAL << "Length of data record = " << scanLen_ << " bytes" << endl ;
846 os << LogIO::NORMAL << "Allocated memory for spectral data = " << dataLen_ << " bytes" << endl ;
847 os << LogIO::NORMAL << "Max number of channel = " << chmax_ << endl ;
848 os << LogIO::NORMAL << "------------------------------------------------------------" << endl ;
849 os.post() ;
850
851}
852
853double NRODataset::toLSR( double v, double t, double x, double y )
854{
855 double vlsr ;
856
857 // get epoch
858 double tcent = t + 0.5*getIPTIM()/86400.0 ;
859 MEpoch me( Quantity( tcent, "d" ), MEpoch::UTC ) ;
860
861 // get antenna position
862 MPosition mp ;
863 if ( SITE.find( "45" ) != string::npos ) {
864 // 45m telescope
865 Double posx = -3.8710235e6 ;
866 Double posy = 3.4281068e6 ;
867 Double posz = 3.7240395e6 ;
868 mp = MPosition( MVPosition( posx, posy, posz ),
869 MPosition::ITRF ) ;
870 }
871 else {
872 // ASTE
873 Vector<Double> pos( 2 ) ;
874 pos[0] = -67.7031 ;
875 pos[1] = -22.9717 ;
876 Double sitealt = 4800.0 ;
877 mp = MPosition( MVPosition( Quantity( sitealt, "m" ),
878 Quantum< Vector<Double> >( pos, "deg" ) ),
879 MPosition::WGS84 ) ;
880 }
881
882 // get direction
883 MDirection md ;
884 if ( SCNCD == 0 ) {
885 // RADEC
886 if ( EPOCH == "B1950" ) {
887 md = MDirection( Quantity( Double(x), "rad" ), Quantity( Double(y), "rad" ),
888 MDirection::B1950 ) ;
889 }
890 else {
891 md = MDirection( Quantity( Double(x), "rad" ), Quantity( Double(y), "rad" ),
892 MDirection::J2000 ) ;
893 }
894 }
895 else if ( SCNCD == 1 ) {
896 // LB
897 md = MDirection( Quantity( Double(x), "rad" ), Quantity( Double(y), "rad" ),
898 MDirection::GALACTIC ) ;
899 }
900 else {
901 // AZEL
902 md = MDirection( Quantity( Double(x), "rad" ), Quantity( Double(y), "rad" ),
903 MDirection::AZEL ) ;
904 }
905
906 // to LSR
907 MeasFrame mf( me, mp, md ) ;
908 MFrequency::Convert tolsr( MFrequency::TOPO, MFrequency::Ref( MFrequency::LSRK, mf ) ) ;
909 vlsr = (double)(tolsr( Double(v) ).get( "Hz" ).getValue()) ;
910
911 return vlsr ;
912}
913
914uInt NRODataset::getPolNo( int i )
915{
916 int idx = getIndex( i ) ;
917// cout << "HORN[" << idx << "]=" << HORN[idx]
918// << ", RX[" << idx << "]=" << RX[idx] << endl ;
919 return polNoFromRX( RX[idx] ) ;
920}
921
922uInt NRODataset::polNoFromRX( const string &rx )
923{
924 uInt polno = 0 ;
925 // 2013/01/23 TN
926 // In NRO 45m telescope, naming convension for dual-polarization
927 // receiver is as follows:
928 //
929 // xxxH for horizontal component,
930 // xxxV for vertical component.
931 //
932 // Exception is H20ch1/ch2.
933 // Here, POLNO is assigned as follows:
934 //
935 // POLNO=0: xxxH or H20ch1
936 // 1: xxxV or H20ch2
937 //
938 // For others, POLNO is always 0.
939 String rxString(rx);
940 rxString.trim();
941 //cout << "rx='" << rxString << "' (size " << rxString.size() << ")" << endl;
942 Regex reRx("(.*V|H20ch2)$");
943 if (reRx.match(rxString.c_str(), rxString.size()) != String::npos) {
944 //cout << "match!" << endl;
945 polno = 1;
946 }
947 return polno ;
948}
949
950void NRODataset::initArray()
951{
952 if (ARYNM <= 0)
953 throw AipsError("ARYNM must be greater than zero.");
954
955 int numArray = 0;
956 arrayNames_.resize(ARYNM);
957 for (int irow = 0; numArray < ARYNM && irow < rowNum_; irow++) {
958 //cout << "irow " << irow << endl;
959 const NRODataRecord *record = getRecord( irow ) ;
960 const string str = record->ARRYT ;
961 if (find(arrayNames_.begin(), arrayNames_.end(), str) == arrayNames_.end()) {
962 arrayNames_[numArray] = str;
963 //cout << "arrayNames_[" << numArray << "]=" << str << endl;
964 ++numArray;
965 }
966 }
967 //cout << "numArray=" << numArray << endl;
968}
969
970int NRODataset::getScanNum()
971{
972 long offset = getDataSize() + scanLen_ * NSCAN * ARYNM ;
973 fseek( fp_, offset, SEEK_SET ) ;
974 // try to read data
975 fgetc( fp_ ) ;
976 int eof = feof( fp_ ) ;
977 //cout << "eof=" << eof << endl;
978 // reset file pointer
979 fseek( fp_, 0, SEEK_SET ) ;
980 return NSCAN + (eof > 0 ? 0 : 1) ;
981}
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