[1757] | 1 | //#--------------------------------------------------------------------------- |
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| 2 | //# NRODataset.cc: Base class for NRO dataset. |
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| 3 | //#--------------------------------------------------------------------------- |
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| 4 | //# Copyright (C) 2000-2006 |
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| 5 | //# Associated Universities, Inc. Washington DC, USA. |
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| 6 | //# |
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| 7 | //# This library is free software; you can redistribute it and/or modify it |
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| 8 | //# under the terms of the GNU Library General Public License as published by |
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| 9 | //# the Free Software Foundation; either version 2 of the License, or (at your |
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| 10 | //# option) any later version. |
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| 11 | //# |
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| 12 | //# This library is distributed in the hope that it will be useful, but WITHOUT |
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| 13 | //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
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| 14 | //# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Library General Public |
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| 15 | //# License for more details. |
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| 16 | //# |
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| 17 | //# You should have received a copy of the GNU Library General Public License |
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| 18 | //# along with this library; if not, write to the Free Software Foundation, |
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| 19 | //# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA. |
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| 20 | //# |
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| 21 | //# Correspondence concerning AIPS++ should be addressed as follows: |
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| 22 | //# Internet email: aips2-request@nrao.edu. |
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| 23 | //# Postal address: AIPS++ Project Office |
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| 24 | //# National Radio Astronomy Observatory |
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| 25 | //# 520 Edgemont Road |
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| 26 | //# Charlottesville, VA 22903-2475 USA |
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| 27 | //# |
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| 28 | //# $Id$ |
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| 29 | //#--------------------------------------------------------------------------- |
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| 30 | //# Original: 2009/02/27, Takeshi Nakazato, NAOJ |
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| 31 | //#--------------------------------------------------------------------------- |
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| 32 | |
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| 33 | #include <atnf/PKSIO/NRODataset.h> |
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| 34 | #include <casa/OS/Time.h> |
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| 35 | #include <scimath/Mathematics/InterpolateArray1D.h> |
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| 36 | |
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[1868] | 37 | #include <measures/Measures/MeasConvert.h> |
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| 38 | #include <measures/Measures/MCFrequency.h> |
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| 39 | #include <measures/Measures/MFrequency.h> |
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| 40 | #include <measures/Measures/MPosition.h> |
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| 41 | #include <measures/Measures/MEpoch.h> |
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| 42 | #include <measures/Measures/MDirection.h> |
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| 43 | |
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[1757] | 44 | #include <math.h> |
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| 45 | #include <fstream> |
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| 46 | |
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| 47 | //#include <casa/namespace.h> |
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| 48 | |
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| 49 | using namespace std ; |
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| 50 | |
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| 51 | // |
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| 52 | // NRODataset |
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| 53 | // |
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| 54 | // Base class for NRO dataset. |
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| 55 | // |
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| 56 | |
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| 57 | // constructor |
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| 58 | NRODataset::NRODataset( string name ) |
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| 59 | { |
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| 60 | LogIO os( LogOrigin( "NRODataset", "NRODataset()", WHERE ) ) ; |
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| 61 | |
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| 62 | // memory allocation |
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| 63 | initialize() ; |
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| 64 | |
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| 65 | filename_ = name ; |
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| 66 | fp_ = NULL ; |
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| 67 | scanNum_ = 0 ; |
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| 68 | rowNum_ = 0 ; |
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| 69 | scanLen_ = 0 ; |
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| 70 | dataLen_ = 0 ; |
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| 71 | dataid_ = -1 ; |
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| 72 | |
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| 73 | // OS endian |
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| 74 | int i = 1 ; |
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| 75 | endian_ = -1 ; |
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| 76 | if ( *reinterpret_cast<char *>(&i) == 1 ) { |
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| 77 | endian_ = LITTLE_ENDIAN ; |
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| 78 | os << LogIO::NORMAL << "LITTLE_ENDIAN " << LogIO::POST ; |
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| 79 | } |
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| 80 | else { |
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| 81 | endian_ = BIG_ENDIAN ; |
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| 82 | os << LogIO::NORMAL << "BIG_ENDIAN " << LogIO::POST ; |
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| 83 | } |
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| 84 | same_ = -1 ; |
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| 85 | } |
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| 86 | |
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| 87 | // destructor |
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| 88 | NRODataset::~NRODataset() |
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| 89 | { |
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| 90 | // release memory |
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| 91 | releaseRecord() ; |
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| 92 | |
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| 93 | // close file |
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| 94 | close() ; |
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| 95 | } |
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| 96 | |
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| 97 | // data initialization |
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| 98 | void NRODataset::initialize() |
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| 99 | { |
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| 100 | datasize_ = sizeof( char ) * 8 // LOFIL |
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| 101 | + sizeof( char ) * 8 // VER |
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| 102 | + sizeof( char ) * 16 // GROUP |
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| 103 | + sizeof( char ) * 16 // PROJ |
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| 104 | + sizeof( char ) * 24 // SCHED |
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| 105 | + sizeof( char ) * 40 // OBSVR |
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| 106 | + sizeof( char ) * 16 // LOSTM |
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| 107 | + sizeof( char ) * 16 // LOETM |
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| 108 | + sizeof( int ) * 2 // ARYNM, NSCAN |
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| 109 | + sizeof( char ) * 120 // TITLE |
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| 110 | + sizeof( char ) * 16 // OBJ |
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| 111 | + sizeof( char ) * 8 // EPOCH |
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| 112 | + sizeof( double ) * 4 // RA0, DEC0, GLNG0, GLAT0 |
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| 113 | + sizeof( int ) * 2 // NCALB, SCNCD |
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| 114 | + sizeof( char ) * 120 // SCMOD |
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| 115 | + sizeof( double ) // URVEL |
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| 116 | + sizeof( char ) * 4 // VREF |
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| 117 | + sizeof( char ) * 4 // VDEF |
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| 118 | + sizeof( char ) * 8 // SWMOD |
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| 119 | + sizeof( double ) * 8 // FRQSW, DBEAM, MLTOF, CMTQ, CMTE, CMTSOM, CMTNODE, CMTI |
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| 120 | + sizeof( char ) * 24 // CMTTM |
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| 121 | + sizeof( double ) * 6 // SBDX, SBDY, SBDZ1, SBDZ2, DAZP, DELP |
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| 122 | + sizeof( int ) * 4 // CHBIND, NUMCH, CHMIN, CHMAX |
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| 123 | + sizeof( double ) * 3 // ALCTM, IPTIM, PA |
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| 124 | + sizeof( int ) * 3 // SCNLEN, SBIND, IBIT |
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| 125 | + sizeof( char ) * 8 ; // SITE |
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| 126 | |
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| 127 | // NRODataRecord |
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| 128 | record_ = new NRODataRecord() ; |
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| 129 | record_->LDATA = NULL ; |
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| 130 | } |
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| 131 | |
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| 132 | void NRODataset::convertEndian( int &value ) |
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| 133 | { |
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| 134 | char volatile *first = reinterpret_cast<char volatile *>( &value ) ; |
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| 135 | char volatile *last = first + sizeof( int ) ; |
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| 136 | std::reverse( first, last ) ; |
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| 137 | } |
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| 138 | |
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| 139 | void NRODataset::convertEndian( float &value ) |
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| 140 | { |
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| 141 | char volatile *first = reinterpret_cast<char volatile *>( &value ) ; |
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| 142 | char volatile *last = first + sizeof( float ) ; |
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| 143 | std::reverse( first, last ) ; |
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| 144 | } |
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| 145 | |
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| 146 | void NRODataset::convertEndian( double &value ) |
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| 147 | { |
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| 148 | char volatile *first = reinterpret_cast<char volatile *>( &value ) ; |
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| 149 | char volatile *last = first + sizeof( double ) ; |
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| 150 | std::reverse( first, last ) ; |
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| 151 | } |
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| 152 | |
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| 153 | int NRODataset::readHeader( char *v, int size ) |
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| 154 | { |
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| 155 | if ( (int)( fread( v, 1, size, fp_ ) ) != size ) { |
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| 156 | return -1 ; |
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| 157 | } |
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| 158 | return 0 ; |
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| 159 | } |
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| 160 | |
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| 161 | int NRODataset::readHeader( int &v, int b ) |
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| 162 | { |
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| 163 | if ( fread( &v, 1, sizeof(int), fp_ ) != sizeof(int) ) { |
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| 164 | return -1 ; |
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| 165 | } |
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| 166 | |
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| 167 | if ( b == 0 ) |
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| 168 | convertEndian( v ) ; |
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| 169 | |
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| 170 | return 0 ; |
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| 171 | } |
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| 172 | |
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| 173 | int NRODataset::readHeader( float &v, int b ) |
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| 174 | { |
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| 175 | if ( fread( &v, 1, sizeof(float), fp_ ) != sizeof(float) ) { |
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| 176 | return -1 ; |
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| 177 | } |
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| 178 | |
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| 179 | if ( b == 0 ) |
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| 180 | convertEndian( v ) ; |
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| 181 | |
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| 182 | return 0 ; |
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| 183 | } |
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| 184 | |
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| 185 | int NRODataset::readHeader( double &v, int b ) |
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| 186 | { |
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| 187 | if ( fread( &v, 1, sizeof(double), fp_ ) != sizeof(double) ) { |
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| 188 | return -1 ; |
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| 189 | } |
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| 190 | |
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| 191 | if ( b == 0 ) |
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| 192 | convertEndian( v ) ; |
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| 193 | |
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| 194 | return 0 ; |
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| 195 | } |
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| 196 | |
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| 197 | void NRODataset::convertEndian( NRODataRecord *r ) |
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| 198 | { |
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| 199 | convertEndian( r->ISCAN ) ; |
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| 200 | convertEndian( r->DSCX ) ; |
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| 201 | convertEndian( r->DSCY ) ; |
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| 202 | convertEndian( r->SCX ) ; |
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| 203 | convertEndian( r->SCY ) ; |
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| 204 | convertEndian( r->PAZ ) ; |
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| 205 | convertEndian( r->PEL ) ; |
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| 206 | convertEndian( r->RAZ ) ; |
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| 207 | convertEndian( r->REL ) ; |
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| 208 | convertEndian( r->XX ) ; |
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| 209 | convertEndian( r->YY ) ; |
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| 210 | convertEndian( r->TEMP ) ; |
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| 211 | convertEndian( r->PATM ) ; |
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| 212 | convertEndian( r->PH2O ) ; |
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| 213 | convertEndian( r->VWIND ) ; |
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| 214 | convertEndian( r->DWIND ) ; |
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| 215 | convertEndian( r->TAU ) ; |
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| 216 | convertEndian( r->TSYS ) ; |
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| 217 | convertEndian( r->BATM ) ; |
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| 218 | convertEndian( r->LINE ) ; |
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| 219 | for ( int i = 0 ; i < 4 ; i++ ) |
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| 220 | convertEndian( r->IDMY1[i] ) ; |
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| 221 | convertEndian( r->VRAD ) ; |
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| 222 | convertEndian( r->FREQ0 ) ; |
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| 223 | convertEndian( r->FQTRK ) ; |
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| 224 | convertEndian( r->FQIF1 ) ; |
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| 225 | convertEndian( r->ALCV ) ; |
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| 226 | for ( int i = 0 ; i < 2 ; i++ ) |
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| 227 | for ( int j = 0 ; j < 2 ; j++ ) |
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| 228 | convertEndian( r->OFFCD[i][j] ) ; |
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| 229 | convertEndian( r->IDMY0 ) ; |
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| 230 | convertEndian( r->IDMY2 ) ; |
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| 231 | convertEndian( r->DPFRQ ) ; |
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| 232 | convertEndian( r->SFCTR ) ; |
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| 233 | convertEndian( r->ADOFF ) ; |
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| 234 | } |
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| 235 | |
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| 236 | void NRODataset::releaseRecord() |
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| 237 | { |
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| 238 | if ( record_ ) { |
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| 239 | if ( record_->LDATA != NULL ) { |
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| 240 | delete record_->LDATA ; |
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| 241 | record_->LDATA = NULL ; |
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| 242 | } |
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| 243 | delete record_ ; |
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| 244 | record_ = NULL ; |
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| 245 | } |
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| 246 | dataid_ = -1 ; |
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| 247 | } |
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| 248 | |
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| 249 | // Get specified scan |
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| 250 | NRODataRecord *NRODataset::getRecord( int i ) |
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| 251 | { |
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| 252 | LogIO os( LogOrigin( "NRODataset", "getRecord()", WHERE ) ) ; |
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| 253 | |
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| 254 | // DEBUG |
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| 255 | //cout << "NRODataset::getRecord() Start " << i << endl ; |
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| 256 | // |
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| 257 | if ( i < 0 || i >= rowNum_ ) { |
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| 258 | //cerr << "NRODataset::getRecord() data index out of range." << endl ; |
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| 259 | os << LogIO::SEVERE << "data index " << i << " out of range. return NULL." << LogIO::POST ; |
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| 260 | return NULL ; |
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| 261 | } |
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| 262 | |
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| 263 | if ( i == dataid_ ) { |
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| 264 | return record_ ; |
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| 265 | } |
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| 266 | |
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| 267 | // DEBUG |
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| 268 | //cout << "NRODataset::getData() Get new dataset" << endl ; |
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| 269 | // |
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| 270 | // read data |
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| 271 | int status = fillRecord( i ) ; |
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| 272 | if ( status == 0 ) { |
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| 273 | dataid_ = i ; |
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| 274 | } |
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| 275 | else { |
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| 276 | //cerr << "NRODataset::getRecord() error while reading data " << i << endl ; |
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| 277 | os << LogIO::SEVERE << "error while reading data " << i << ". return NULL." << LogIO::POST ; |
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| 278 | dataid_ = -1 ; |
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| 279 | return NULL ; |
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| 280 | } |
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| 281 | |
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| 282 | return record_ ; |
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| 283 | } |
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| 284 | |
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| 285 | int NRODataset::fillRecord( int i ) |
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| 286 | { |
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| 287 | LogIO os( LogOrigin( "NRODataset", "fillRecord()", WHERE ) ) ; |
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| 288 | |
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| 289 | int status = 0 ; |
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| 290 | |
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| 291 | status = open() ; |
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| 292 | if ( status != 0 ) |
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| 293 | return status ; |
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| 294 | |
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| 295 | |
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| 296 | // fill NRODataset |
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| 297 | int offset = getDataSize() + scanLen_ * i ; |
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| 298 | // DEBUG |
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| 299 | //cout << "NRODataset::fillRecord() offset (header) = " << offset << endl ; |
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| 300 | //cout << "NRODataset::fillRecord() sizeof(NRODataRecord) = " << sizeof( NRODataRecord ) << " byte" << endl ; |
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| 301 | fseek( fp_, offset, SEEK_SET ) ; |
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| 302 | if ( (int)fread( record_, 1, SCAN_HEADER_SIZE, fp_ ) != SCAN_HEADER_SIZE ) { |
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| 303 | //cerr << "Failed to read scan header: " << i << endl ; |
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| 304 | os << LogIO::SEVERE << "Failed to read scan header for " << i << "th row." << LogIO::POST ; |
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| 305 | return -1 ; |
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| 306 | } |
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| 307 | if ( (int)fread( record_->LDATA, 1, dataLen_, fp_ ) != dataLen_ ) { |
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| 308 | //cerr << "Failed to read spectral data: " << i << endl ; |
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| 309 | os << LogIO::SEVERE << "Failed to read spectral data for " << i << "th row." << LogIO::POST ; |
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| 310 | return -1 ; |
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| 311 | } |
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| 312 | |
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| 313 | if ( same_ == 0 ) { |
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| 314 | convertEndian( record_ ) ; |
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| 315 | } |
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| 316 | |
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| 317 | // DWIND unit conversion (deg -> rad) |
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| 318 | record_->DWIND = record_->DWIND * M_PI / 180.0 ; |
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| 319 | |
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| 320 | return status ; |
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| 321 | } |
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| 322 | |
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| 323 | // open |
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| 324 | int NRODataset::open() |
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| 325 | { |
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| 326 | int status = 0 ; |
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| 327 | |
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| 328 | if ( fp_ == NULL ) { |
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| 329 | if ( (fp_ = fopen( filename_.c_str(), "rb" )) == NULL ) |
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| 330 | status = -1 ; |
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| 331 | else |
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| 332 | status = 0 ; |
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| 333 | } |
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| 334 | |
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| 335 | return status ; |
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| 336 | } |
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| 337 | |
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| 338 | // close |
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| 339 | void NRODataset::close() |
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| 340 | { |
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| 341 | // DEBUG |
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| 342 | //cout << "NRODataset::close() close file" << endl ; |
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| 343 | // |
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| 344 | if ( fp_ != NULL ) |
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| 345 | fclose( fp_ ) ; |
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| 346 | fp_ = NULL ; |
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| 347 | } |
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| 348 | |
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| 349 | // get spectrum |
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| 350 | vector< vector<double> > NRODataset::getSpectrum() |
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| 351 | { |
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| 352 | vector< vector<double> > spec; |
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| 353 | |
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| 354 | for ( int i = 0 ; i < rowNum_ ; i++ ) { |
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| 355 | spec.push_back( getSpectrum( i ) ) ; |
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| 356 | } |
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| 357 | |
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| 358 | return spec ; |
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| 359 | } |
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| 360 | |
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| 361 | vector<double> NRODataset::getSpectrum( int i ) |
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| 362 | { |
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| 363 | LogIO os( LogOrigin( "NRODataset", "getSpectrum", WHERE ) ) ; |
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| 364 | |
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| 365 | // DEBUG |
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| 366 | //cout << "NRODataset::getSpectrum() start process (" << i << ")" << endl ; |
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| 367 | // |
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| 368 | // size of spectrum is not chmax_ but dataset_->getNCH() after binding |
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| 369 | int nchan = NUMCH ; |
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| 370 | vector<double> spec( chmax_, 0.0 ) ; // spectrum "before" binding |
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| 371 | vector<double> bspec( nchan, 0.0 ) ; // spectrum "after" binding |
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| 372 | // DEBUG |
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| 373 | //cout << "NRODataset::getSpectrum() nchan = " << nchan << " chmax_ = " << chmax_ << endl ; |
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| 374 | // |
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| 375 | |
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| 376 | NRODataRecord *record = getRecord( i ) ; |
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| 377 | |
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| 378 | int bit = IBIT ; // fixed to 12 bit |
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| 379 | double scale = record->SFCTR ; |
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| 380 | // DEBUG |
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| 381 | //cout << "NRODataset::getSpectrum() scale = " << scale << endl ; |
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| 382 | // |
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| 383 | double offset = record->ADOFF ; |
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| 384 | // DEBUG |
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| 385 | //cout << "NRODataset::getSpectrum() offset = " << offset << endl ; |
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| 386 | // |
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| 387 | if ( ( scale == 0.0 ) && ( offset == 0.0 ) ) { |
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| 388 | //cerr << "NRODataset::getSpectrum() zero spectrum (" << i << ")" << endl ; |
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| 389 | return bspec ; |
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| 390 | } |
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| 391 | char *cdata = record->LDATA ; |
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| 392 | vector<double> mscale = MLTSCF ; |
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| 393 | double dscale = mscale[getIndex( i )] ; |
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| 394 | int cbind = CHBIND ; |
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| 395 | int chmin = CHMIN ; |
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| 396 | |
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| 397 | // char -> int |
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| 398 | vector<int> ispec( chmax_, 0 ) ; |
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| 399 | union SharedMemory { |
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| 400 | int ivalue ; |
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| 401 | unsigned char cbuf[4] ; |
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| 402 | } ; |
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| 403 | SharedMemory u ; |
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| 404 | int j = 0 ; |
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| 405 | char ctmp = 0x00 ; |
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| 406 | int sw = 0 ; |
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| 407 | for ( int i = 0 ; i < chmax_ ; i++ ) { |
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| 408 | if ( bit == 12 ) { // 12 bit qunatization |
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| 409 | u.ivalue = 0 ; |
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| 410 | |
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| 411 | if ( endian_ == BIG_ENDIAN ) { |
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| 412 | // big endian |
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| 413 | if ( sw == 0 ) { |
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| 414 | char c0 = (cdata[j] >> 4) & 0x0f ; |
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| 415 | char c1 = ((cdata[j] << 4) & 0xf0) | ((cdata[j+1] >> 4) & 0x0f) ; |
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| 416 | ctmp = cdata[j+1] & 0x0f ; |
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| 417 | u.cbuf[2] = c0 ; |
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| 418 | u.cbuf[3] = c1 ; |
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| 419 | j += 2 ; |
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| 420 | sw = 1 ; |
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| 421 | } |
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| 422 | else if ( sw == 1 ) { |
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| 423 | u.cbuf[2] = ctmp ; |
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| 424 | u.cbuf[3] = cdata[j] ; |
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| 425 | j++ ; |
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| 426 | sw = 0 ; |
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| 427 | } |
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| 428 | } |
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| 429 | else if ( endian_ == LITTLE_ENDIAN ) { |
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| 430 | // little endian |
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| 431 | if ( sw == 0 ) { |
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| 432 | char c0 = (cdata[j] >> 4) & 0x0f ; |
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| 433 | char c1 = ((cdata[j] << 4) & 0xf0) | ((cdata[j+1] >> 4) & 0x0f) ; |
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| 434 | ctmp = cdata[j+1] & 0x0f ; |
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| 435 | u.cbuf[1] = c0 ; |
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| 436 | u.cbuf[0] = c1 ; |
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| 437 | j += 2 ; |
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| 438 | sw = 1 ; |
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| 439 | } |
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| 440 | else if ( sw == 1 ) { |
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| 441 | u.cbuf[1] = ctmp ; |
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| 442 | u.cbuf[0] = cdata[j] ; |
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| 443 | j++ ; |
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| 444 | sw = 0 ; |
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| 445 | } |
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| 446 | } |
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| 447 | } |
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| 448 | |
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| 449 | ispec[i] = u.ivalue ; |
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| 450 | if ( ( ispec[i] < 0 ) || ( ispec[i] > 4096 ) ) { |
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| 451 | //cerr << "NRODataset::getSpectrum() ispec[" << i << "] is out of range" << endl ; |
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| 452 | os << LogIO::SEVERE << "ispec[" << i << "] is out of range" << LogIO::EXCEPTION ; |
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| 453 | return bspec ; |
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| 454 | } |
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| 455 | // DEBUG |
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| 456 | //cout << "NRODataset::getSpectrum() ispec[" << i << "] = " << ispec[i] << endl ; |
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| 457 | // |
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| 458 | } |
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| 459 | |
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| 460 | // int -> double |
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| 461 | for ( int i = 0 ; i < chmax_ ; i++ ) { |
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| 462 | spec[i] = (double)( ispec[i] * scale + offset ) * dscale ; |
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| 463 | // DEBUG |
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| 464 | //cout << "NRODataset::getSpectrum() spec[" << i << "] = " << spec[i] << endl ; |
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| 465 | // |
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| 466 | } |
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| 467 | |
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| 468 | // channel binding |
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| 469 | if ( cbind != 1 ) { |
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| 470 | int k = chmin ; |
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| 471 | double sum0 = 0 ; |
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| 472 | double sum1 = 0 ; |
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| 473 | for ( int i = 0 ; i < nchan ; i++ ) { |
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| 474 | for ( int j = k ; j < k + cbind ; j++ ) { |
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| 475 | sum0 += spec[k] ; |
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| 476 | sum1++ ; |
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| 477 | } |
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| 478 | bspec[i] = sum0 / sum1 ; |
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| 479 | k += cbind ; |
---|
| 480 | // DEBUG |
---|
| 481 | //cout << "NRODataset::getSpectrum() bspec[" << i << "] = " << bspec[i] << endl ; |
---|
| 482 | // |
---|
| 483 | } |
---|
| 484 | } |
---|
| 485 | else { |
---|
| 486 | for ( int i = 0 ; i < nchan ; i++ ) |
---|
| 487 | bspec[i] = spec[i] ; |
---|
| 488 | } |
---|
| 489 | |
---|
| 490 | // DEBUG |
---|
| 491 | //cout << "NRODataset::getSpectrum() end process" << endl ; |
---|
| 492 | // |
---|
| 493 | |
---|
| 494 | return bspec ; |
---|
| 495 | } |
---|
| 496 | |
---|
| 497 | int NRODataset::getIndex( int irow ) |
---|
| 498 | { |
---|
| 499 | // DEBUG |
---|
| 500 | //cout << "NRODataset::getIndex() start" << endl ; |
---|
| 501 | // |
---|
| 502 | NRODataRecord *record = getRecord( irow ) ; |
---|
| 503 | string str = record->ARRYT ; |
---|
| 504 | // DEBUG |
---|
| 505 | //cout << "NRODataset::getIndex() str = " << str << endl ; |
---|
| 506 | // |
---|
| 507 | string substr = str.substr( 1, 2 ) ; |
---|
| 508 | unsigned int index = (unsigned int)(atoi( substr.c_str() ) - 1) ; |
---|
| 509 | // DEBUG |
---|
| 510 | //cout << "NRODataset::getIndex() irow = " << irow << " index = " << index << endl ; |
---|
| 511 | // |
---|
| 512 | |
---|
| 513 | // DEBUG |
---|
| 514 | //cout << "NRODataset::getIndex() end" << endl ; |
---|
| 515 | // |
---|
| 516 | return index ; |
---|
| 517 | } |
---|
| 518 | |
---|
| 519 | int NRODataset::getPolarizationNum() |
---|
| 520 | { |
---|
| 521 | // DEBUG |
---|
| 522 | //cout << "NRODataset::getPolarizationNum() start process" << endl ; |
---|
| 523 | // |
---|
| 524 | int npol = 0 ; |
---|
| 525 | |
---|
| 526 | vector<string> type( 2 ) ; |
---|
| 527 | type[0] = "CIRC" ; |
---|
| 528 | type[1] = "LINR" ; |
---|
| 529 | vector<double> crot ; |
---|
| 530 | vector<double> lagl ; |
---|
| 531 | //vector<int> ntype( 2, 0 ) ; |
---|
| 532 | |
---|
| 533 | unsigned int imax = rowNum_ ; |
---|
| 534 | for ( unsigned int i = 0 ; i < imax ; i++ ) { |
---|
| 535 | int index = getIndex( i ) ; |
---|
| 536 | // DEBUG |
---|
| 537 | //cout <<"NRODataset::getPolarizationNum() index = " << index << endl ; |
---|
| 538 | // |
---|
| 539 | if ( POLTP[index] == type[0] ) { |
---|
| 540 | if( count( crot.begin(), crot.end(), POLDR[index] ) != 0 ) { |
---|
| 541 | crot.push_back( POLDR[index] ) ; |
---|
| 542 | npol++ ; |
---|
| 543 | } |
---|
| 544 | //ntype[0] = 1 ; |
---|
| 545 | } |
---|
| 546 | else if ( POLTP[index] == type[1] ) { |
---|
| 547 | if ( count( lagl.begin(), lagl.end(), POLAN[index] ) != 0 ) { |
---|
| 548 | lagl.push_back( POLAN[index] ) ; |
---|
| 549 | npol++ ; |
---|
| 550 | } |
---|
| 551 | //ntype[1] = 1 ; |
---|
| 552 | } |
---|
| 553 | } |
---|
| 554 | |
---|
| 555 | if ( npol == 0 ) |
---|
| 556 | npol = 1 ; |
---|
| 557 | |
---|
| 558 | // DEBUG |
---|
| 559 | //cout << "NRODataset::getPolarizationNum() end process" << endl ; |
---|
| 560 | // |
---|
| 561 | |
---|
| 562 | return npol ; |
---|
| 563 | } |
---|
| 564 | |
---|
| 565 | vector<double> NRODataset::getStartIntTime() |
---|
| 566 | { |
---|
| 567 | vector<double> times ; |
---|
| 568 | for ( int i = 0 ; i < rowNum_ ; i++ ) { |
---|
| 569 | times.push_back( getStartIntTime( i ) ) ; |
---|
| 570 | } |
---|
| 571 | return times ; |
---|
| 572 | } |
---|
| 573 | |
---|
| 574 | double NRODataset::getStartIntTime( int i ) |
---|
| 575 | { |
---|
| 576 | NRODataRecord *record = getRecord( i ) ; |
---|
| 577 | |
---|
| 578 | char *t = record->LAVST ; |
---|
| 579 | return getMJD( t ) ; |
---|
| 580 | } |
---|
| 581 | |
---|
| 582 | double NRODataset::getMJD( char *time ) |
---|
| 583 | { |
---|
| 584 | // TODO: should be checked which time zone the time depends on |
---|
| 585 | // 2008/11/14 Takeshi Nakazato |
---|
| 586 | string strStartTime( time ) ; |
---|
| 587 | string strYear = strStartTime.substr( 0, 4 ) ; |
---|
| 588 | string strMonth = strStartTime.substr( 4, 2 ) ; |
---|
| 589 | string strDay = strStartTime.substr( 6, 2 ) ; |
---|
| 590 | string strHour = strStartTime.substr( 8, 2 ) ; |
---|
| 591 | string strMinute = strStartTime.substr( 10, 2 ) ; |
---|
| 592 | string strSecond = strStartTime.substr( 12, strStartTime.size() - 12 ) ; |
---|
| 593 | unsigned int year = atoi( strYear.c_str() ) ; |
---|
| 594 | unsigned int month = atoi( strMonth.c_str() ) ; |
---|
| 595 | unsigned int day = atoi( strDay.c_str() ) ; |
---|
| 596 | unsigned int hour = atoi( strHour.c_str() ) ; |
---|
| 597 | unsigned int minute = atoi( strMinute.c_str() ) ; |
---|
| 598 | double second = atof( strSecond.c_str() ) ; |
---|
| 599 | Time t( year, month, day, hour, minute, second ) ; |
---|
| 600 | |
---|
| 601 | return t.modifiedJulianDay() ; |
---|
| 602 | } |
---|
| 603 | |
---|
| 604 | vector<bool> NRODataset::getIFs() |
---|
| 605 | { |
---|
| 606 | vector<bool> v ; |
---|
| 607 | vector< vector<double> > fref ; |
---|
| 608 | vector< vector<double> > chcal = CHCAL ; |
---|
| 609 | vector<double> f0cal = F0CAL ; |
---|
| 610 | vector<double> beres = BERES ; |
---|
| 611 | for ( int i = 0 ; i < rowNum_ ; i++ ) { |
---|
| 612 | vector<double> f( 4, 0 ) ; |
---|
| 613 | uInt index = getIndex( i ) ; |
---|
| 614 | f[0] = chcal[index][0] ; |
---|
| 615 | f[1] = f0cal[index] ; |
---|
| 616 | f[2] = beres[index] ; |
---|
| 617 | if ( f[0] != 0. ) { |
---|
| 618 | f[1] = f[1] - f[0] * f[2] ; |
---|
| 619 | } |
---|
| 620 | NRODataRecord *record = getRecord( i ) ; |
---|
| 621 | f[3] = record->FREQ0 ; |
---|
| 622 | if ( v.size() == 0 ) { |
---|
| 623 | v.push_back( True ) ; |
---|
| 624 | fref.push_back( f ) ; |
---|
| 625 | } |
---|
| 626 | else { |
---|
| 627 | bool b = true ; |
---|
| 628 | int fsize = fref.size() ; |
---|
| 629 | for ( int j = 0 ; j < fsize ; j++ ) { |
---|
| 630 | if ( fref[j][1] == f[1] && fref[j][2] == f[2] && fref[j][3] == f[3] ) { |
---|
| 631 | b = false ; |
---|
| 632 | } |
---|
| 633 | } |
---|
| 634 | if ( b ) { |
---|
| 635 | v.push_back( True ) ; |
---|
| 636 | fref.push_back( f ) ; |
---|
| 637 | } |
---|
| 638 | } |
---|
| 639 | } |
---|
| 640 | |
---|
| 641 | |
---|
| 642 | // DEBUG |
---|
| 643 | //cout << "NRODataset::getIFs() number of IF is " << v.size() << endl ; |
---|
| 644 | // |
---|
| 645 | |
---|
| 646 | return v ; |
---|
| 647 | } |
---|
| 648 | |
---|
| 649 | vector<double> NRODataset::getFrequencies( int i ) |
---|
| 650 | { |
---|
| 651 | // return value |
---|
| 652 | // v[0] reference channel |
---|
| 653 | // v[1] reference frequency |
---|
| 654 | // v[2] frequency increment |
---|
| 655 | vector<double> v( 3, 0.0 ) ; |
---|
| 656 | |
---|
| 657 | NRODataRecord *record = getRecord( i ) ; |
---|
| 658 | string arryt = string( record->ARRYT ) ; |
---|
| 659 | //string sbeamno = arryt.substr( 1, arryt.size()-1 ) ; |
---|
| 660 | //uInt ib = atoi( sbeamno.c_str() ) - 1 ; |
---|
| 661 | uInt ib = getArrayId( arryt ) ; |
---|
| 662 | |
---|
| 663 | int ia = -1 ; |
---|
| 664 | bool isAOS = false ; |
---|
| 665 | //cout << "NRODataset::getFrequencies() record->ARRYT=" << record->ARRYT << endl ; |
---|
| 666 | //cout << "NRODataset::getFrequencies() ib = " << ib << endl ; |
---|
| 667 | |
---|
| 668 | if ( strncmp( record->ARRYT, "X", 1 ) == 0 ) { |
---|
| 669 | // FX |
---|
| 670 | if ( strncmp( (record->ARRYT)+1, "1", 1 ) == 0 |
---|
| 671 | || strncmp( (record->ARRYT)+1, "3", 1 ) ) { |
---|
| 672 | // FX1, 3 |
---|
| 673 | ia = 2 ; |
---|
| 674 | } |
---|
| 675 | else { |
---|
| 676 | // FX2, 4 |
---|
| 677 | ia = 1 ; |
---|
| 678 | } |
---|
| 679 | } |
---|
| 680 | else if ( strncmp( record->ARRYT, "A", 1 ) == 0 ) |
---|
| 681 | ia = 2 ; // AC |
---|
| 682 | else if ( strncmp( record->ARRYT, "W", 1 ) == 0 ) { |
---|
| 683 | // AOS-W |
---|
| 684 | ia = 2 ; |
---|
| 685 | isAOS = true ; |
---|
| 686 | } |
---|
| 687 | else if ( strncmp( record->ARRYT, "U", 1 ) == 0 ) { |
---|
| 688 | // AOS-U |
---|
| 689 | ia = 2 ; |
---|
| 690 | isAOS = true ; |
---|
| 691 | } |
---|
| 692 | else if ( strncmp( record->ARRYT, "H", 1 ) == 0 ) { |
---|
| 693 | // AOS-H |
---|
| 694 | isAOS = true ; |
---|
| 695 | //cout << record->ARRYT << " " << strlen(record->ARRYT) << endl ; |
---|
| 696 | //cout << (record->ARRYT)+1 << endl ; |
---|
| 697 | if ( strncmp( (record->ARRYT)+2, " ", 1 ) == 0 ) { |
---|
| 698 | // H1-9 |
---|
| 699 | if ( strncmp( (record->ARRYT)+1, "9", 1 ) == 0 ) { |
---|
| 700 | // H9 |
---|
| 701 | ia = 2 ; |
---|
| 702 | } |
---|
| 703 | else { |
---|
| 704 | // H1-8 |
---|
| 705 | ia = 1 ; |
---|
| 706 | } |
---|
| 707 | } |
---|
| 708 | else { |
---|
| 709 | // H10-16 |
---|
| 710 | ia = 2 ; |
---|
| 711 | } |
---|
| 712 | } |
---|
| 713 | |
---|
| 714 | int iu ; |
---|
| 715 | if ( record->FQIF1 > 0 ) |
---|
| 716 | iu = 1 ; // USB |
---|
| 717 | else |
---|
| 718 | iu = 2 ; // LSB |
---|
| 719 | |
---|
| 720 | int ivdef = -1 ; |
---|
| 721 | //if ( strncmp( (dataset_->getVDEF()).c_str(), "RAD", 3 ) == 0 ) |
---|
| 722 | if ( (getVDEF()).compare( 0, 3, "RAD" ) == 0 ) |
---|
| 723 | ivdef = 0 ; |
---|
| 724 | //else if ( strncmp( dataset_->getVDEF(), "OPT", 3 ) == 0 ) |
---|
| 725 | else if ( (getVDEF()).compare( 0, 3, "OPT" ) == 0 ) |
---|
| 726 | ivdef = 1 ; |
---|
| 727 | // DEBUG |
---|
| 728 | //cout << "NRODataset::getFrequencies() ivdef = " << ivdef << endl ; |
---|
| 729 | // |
---|
| 730 | double vel = getURVEL() + record->VRAD ; |
---|
| 731 | double cvel = 2.99792458e8 ; // speed of light [m/s] |
---|
| 732 | double fq0 = record->FREQ0 ; |
---|
| 733 | //double fq0 = record->FQTRK ; |
---|
| 734 | |
---|
| 735 | int ncal = getNFCAL()[ib] ; |
---|
| 736 | vector<double> freqs( ncal ) ; |
---|
| 737 | double cw = 0.0 ; |
---|
| 738 | vector<double> fqcal = getFQCAL()[ib] ; |
---|
| 739 | vector<double> chcal = getCHCAL()[ib] ; |
---|
| 740 | |
---|
| 741 | for ( int ii = 0 ; ii < ncal ; ii++ ) { |
---|
| 742 | freqs[ii] = fqcal[ii] ; |
---|
| 743 | freqs[ii] -= getF0CAL()[ib] ; |
---|
| 744 | if ( ia == 1 ) { |
---|
| 745 | if ( iu == 1 ) { |
---|
| 746 | freqs[ii] = fq0 + freqs[ii] ; |
---|
| 747 | } |
---|
| 748 | else if ( iu == 2 ) { |
---|
| 749 | freqs[ii] = fq0 - freqs[ii] ; |
---|
| 750 | } |
---|
| 751 | } |
---|
| 752 | else if ( ia == 2 ) { |
---|
| 753 | if ( iu == 1 ) { |
---|
| 754 | freqs[ii] = fq0 - freqs[ii] ; |
---|
| 755 | } |
---|
| 756 | else if ( iu == 2 ) { |
---|
| 757 | freqs[ii] = fq0 + freqs[ii] ; |
---|
| 758 | } |
---|
| 759 | } |
---|
| 760 | // if ( ivdef == 0 ) { |
---|
| 761 | // double factor = 1.0 / ( 1.0 - vel / cvel ) ; |
---|
| 762 | // freqs[ii] = freqs[ii] * factor - record->FQTRK * ( factor - 1.0 ) ; |
---|
| 763 | // } |
---|
| 764 | // else if ( ivdef == 1 ) { |
---|
| 765 | // double factor = vel / cvel ; |
---|
| 766 | // freqs[ii] = freqs[ii] * ( 1.0 + factor ) - record->FQTRK * factor ; |
---|
| 767 | // } |
---|
| 768 | } |
---|
| 769 | |
---|
| 770 | if ( isAOS ) { |
---|
| 771 | // regridding |
---|
| 772 | while ( ncal < (int)chcal.size() ) { |
---|
| 773 | chcal.pop_back() ; |
---|
| 774 | } |
---|
| 775 | Vector<Double> xin( chcal ) ; |
---|
| 776 | Vector<Double> yin( freqs ) ; |
---|
| 777 | int nchan = getNUMCH() ; |
---|
| 778 | Vector<Double> xout( nchan ) ; |
---|
| 779 | indgen( xout ) ; |
---|
| 780 | Vector<Double> yout ; |
---|
| 781 | InterpolateArray1D<Double, Double>::interpolate( yout, xout, xin, yin, InterpolateArray1D<Double,Double>::cubic ) ; |
---|
| 782 | Double bw = abs( yout[nchan-1] - yout[0] ) ; |
---|
| 783 | bw += 0.5 * abs( yout[nchan-1] - yout[nchan-2] + yout[1] - yout[0] ) ; |
---|
| 784 | Double dz = bw / (Double) nchan ; |
---|
| 785 | if ( yout[0] > yout[1] ) |
---|
| 786 | dz = - dz ; |
---|
| 787 | v[0] = 0 ; |
---|
| 788 | v[1] = yout[0] ; |
---|
| 789 | v[2] = dz ; |
---|
| 790 | } |
---|
| 791 | else { |
---|
| 792 | cw = getBERES()[ib] ; |
---|
| 793 | |
---|
[2031] | 794 | if ( iu == 2 ) |
---|
| 795 | cw *= -1.0 ; |
---|
| 796 | |
---|
[1757] | 797 | if ( cw == 0.0 ) { |
---|
| 798 | cw = ( freqs[1] - freqs[0] ) |
---|
| 799 | / ( chcal[1] - chcal[0] ) ; |
---|
| 800 | // if ( cw < 0.0 ) |
---|
| 801 | // cw = - cw ; |
---|
| 802 | } |
---|
| 803 | v[0] = chcal[0] - 1 ; // 0-base |
---|
| 804 | v[1] = freqs[0] ; |
---|
| 805 | v[2] = cw ; |
---|
| 806 | } |
---|
| 807 | |
---|
[1868] | 808 | // conversion from TOPO to LSRK |
---|
| 809 | v[1] = toLSR( v[1], getStartIntTime( i ), record_->SCX, record_->SCY ) ; |
---|
| 810 | |
---|
| 811 | if ( refFreq_[ib] != 0.0 ) { |
---|
| 812 | v[1] = refFreq_[ib] ; |
---|
| 813 | } |
---|
| 814 | else { |
---|
| 815 | refFreq_[ib] = v[1] ; |
---|
| 816 | } |
---|
| 817 | |
---|
[1757] | 818 | return v ; |
---|
| 819 | } |
---|
| 820 | |
---|
| 821 | uInt NRODataset::getArrayId( string type ) |
---|
| 822 | { |
---|
| 823 | string sbeamno = type.substr( 1, type.size()-1 ) ; |
---|
| 824 | uInt ib = atoi( sbeamno.c_str() ) - 1 ; |
---|
| 825 | return ib ; |
---|
| 826 | } |
---|
| 827 | |
---|
| 828 | void NRODataset::show() |
---|
| 829 | { |
---|
| 830 | LogIO os( LogOrigin( "NRODataset", "show()", WHERE ) ) ; |
---|
| 831 | |
---|
| 832 | os << LogIO::NORMAL << "------------------------------------------------------------" << endl ; |
---|
| 833 | os << LogIO::NORMAL << "Number of scan = " << scanNum_ << endl ; |
---|
| 834 | os << LogIO::NORMAL << "Number of data record = " << rowNum_ << endl ; |
---|
| 835 | os << LogIO::NORMAL << "Length of data record = " << scanLen_ << " bytes" << endl ; |
---|
| 836 | os << LogIO::NORMAL << "Allocated memory for spectral data = " << dataLen_ << " bytes" << endl ; |
---|
| 837 | os << LogIO::NORMAL << "Max number of channel = " << chmax_ << endl ; |
---|
| 838 | os << LogIO::NORMAL << "------------------------------------------------------------" << endl ; |
---|
| 839 | os.post() ; |
---|
| 840 | |
---|
| 841 | } |
---|
[1868] | 842 | |
---|
| 843 | double NRODataset::toLSR( double v, double t, double x, double y ) |
---|
| 844 | { |
---|
| 845 | double vlsr ; |
---|
| 846 | |
---|
| 847 | // get epoch |
---|
| 848 | double tcent = t + 0.5*getIPTIM()/86400.0 ; |
---|
| 849 | MEpoch me( Quantity( tcent, "d" ), MEpoch::UTC ) ; |
---|
| 850 | |
---|
| 851 | // get antenna position |
---|
| 852 | MPosition mp ; |
---|
| 853 | if ( SITE.find( "45" ) != string::npos ) { |
---|
| 854 | // 45m telescope |
---|
| 855 | Double posx = -3.8710235e6 ; |
---|
| 856 | Double posy = 3.4281068e6 ; |
---|
| 857 | Double posz = 3.7240395e6 ; |
---|
| 858 | mp = MPosition( MVPosition( posx, posy, posz ), |
---|
| 859 | MPosition::ITRF ) ; |
---|
| 860 | } |
---|
| 861 | else { |
---|
| 862 | // ASTE |
---|
| 863 | Vector<Double> pos( 2 ) ; |
---|
| 864 | pos[0] = -67.7031 ; |
---|
| 865 | pos[1] = -22.9717 ; |
---|
| 866 | Double sitealt = 4800.0 ; |
---|
| 867 | mp = MPosition( MVPosition( Quantity( sitealt, "m" ), |
---|
| 868 | Quantum< Vector<Double> >( pos, "deg" ) ), |
---|
| 869 | MPosition::WGS84 ) ; |
---|
| 870 | } |
---|
| 871 | |
---|
| 872 | // get direction |
---|
| 873 | MDirection md ; |
---|
| 874 | if ( SCNCD == 0 ) { |
---|
| 875 | // RADEC |
---|
| 876 | if ( EPOCH == "B1950" ) { |
---|
| 877 | md = MDirection( Quantity( Double(x), "rad" ), Quantity( Double(y), "rad" ), |
---|
| 878 | MDirection::B1950 ) ; |
---|
| 879 | } |
---|
| 880 | else { |
---|
| 881 | md = MDirection( Quantity( Double(x), "rad" ), Quantity( Double(y), "rad" ), |
---|
| 882 | MDirection::J2000 ) ; |
---|
| 883 | } |
---|
| 884 | } |
---|
| 885 | else if ( SCNCD == 1 ) { |
---|
| 886 | // LB |
---|
| 887 | md = MDirection( Quantity( Double(x), "rad" ), Quantity( Double(y), "rad" ), |
---|
| 888 | MDirection::GALACTIC ) ; |
---|
| 889 | } |
---|
| 890 | else { |
---|
| 891 | // AZEL |
---|
| 892 | md = MDirection( Quantity( Double(x), "rad" ), Quantity( Double(y), "rad" ), |
---|
| 893 | MDirection::AZEL ) ; |
---|
| 894 | } |
---|
| 895 | |
---|
| 896 | // to LSR |
---|
| 897 | MeasFrame mf( me, mp, md ) ; |
---|
| 898 | MFrequency::Convert tolsr( MFrequency::TOPO, MFrequency::Ref( MFrequency::LSRK, mf ) ) ; |
---|
| 899 | vlsr = (double)(tolsr( Double(v) ).get( "Hz" ).getValue()) ; |
---|
| 900 | |
---|
| 901 | return vlsr ; |
---|
| 902 | } |
---|