1 | //#--------------------------------------------------------------------------- |
---|
2 | //# SDFITSreader.cc: ATNF interface class for SDFITS input using CFITSIO. |
---|
3 | //#--------------------------------------------------------------------------- |
---|
4 | //# livedata - processing pipeline for single-dish, multibeam spectral data. |
---|
5 | //# Copyright (C) 2000-2009, Australia Telescope National Facility, CSIRO |
---|
6 | //# |
---|
7 | //# This file is part of livedata. |
---|
8 | //# |
---|
9 | //# livedata is free software: you can redistribute it and/or modify it under |
---|
10 | //# the terms of the GNU General Public License as published by the Free |
---|
11 | //# Software Foundation, either version 3 of the License, or (at your option) |
---|
12 | //# any later version. |
---|
13 | //# |
---|
14 | //# livedata is distributed in the hope that it will be useful, but WITHOUT |
---|
15 | //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
---|
16 | //# FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for |
---|
17 | //# more details. |
---|
18 | //# |
---|
19 | //# You should have received a copy of the GNU General Public License along |
---|
20 | //# with livedata. If not, see <http://www.gnu.org/licenses/>. |
---|
21 | //# |
---|
22 | //# Correspondence concerning livedata may be directed to: |
---|
23 | //# Internet email: mcalabre@atnf.csiro.au |
---|
24 | //# Postal address: Dr. Mark Calabretta |
---|
25 | //# Australia Telescope National Facility, CSIRO |
---|
26 | //# PO Box 76 |
---|
27 | //# Epping NSW 1710 |
---|
28 | //# AUSTRALIA |
---|
29 | //# |
---|
30 | //# http://www.atnf.csiro.au/computing/software/livedata.html |
---|
31 | //# $Id: SDFITSreader.cc,v 19.45 2009-09-30 07:23:48 cal103 Exp $ |
---|
32 | //#--------------------------------------------------------------------------- |
---|
33 | //# The SDFITSreader class reads single dish FITS files such as those written |
---|
34 | //# by SDFITSwriter containing Parkes Multibeam data. |
---|
35 | //# |
---|
36 | //# Original: 2000/08/09, Mark Calabretta, ATNF |
---|
37 | //#--------------------------------------------------------------------------- |
---|
38 | |
---|
39 | #include <atnf/pks/pks_maths.h> |
---|
40 | #include <atnf/PKSIO/PKSmsg.h> |
---|
41 | #include <atnf/PKSIO/MBrecord.h> |
---|
42 | #include <atnf/PKSIO/SDFITSreader.h> |
---|
43 | |
---|
44 | #include <casa/math.h> |
---|
45 | #include <casa/stdio.h> |
---|
46 | |
---|
47 | #include <algorithm> |
---|
48 | #include <strings.h> |
---|
49 | #include <cstring> |
---|
50 | |
---|
51 | class FITSparm |
---|
52 | { |
---|
53 | public: |
---|
54 | char *name; // Keyword or column name. |
---|
55 | int type; // Expected keyvalue or column data type. |
---|
56 | int colnum; // Column number; 0 for keyword; -1 absent. |
---|
57 | int coltype; // Column data type, as found. |
---|
58 | long nelem; // Column data repeat count; < 0 for vardim. |
---|
59 | int tdimcol; // TDIM column number; 0 for keyword; -1 absent. |
---|
60 | char units[32]; // Units from TUNITn keyword. |
---|
61 | }; |
---|
62 | |
---|
63 | // Numerical constants. |
---|
64 | const double PI = 3.141592653589793238462643; |
---|
65 | |
---|
66 | // Factor to convert radians to degrees. |
---|
67 | const double D2R = PI / 180.0; |
---|
68 | |
---|
69 | //---------------------------------------------------- SDFITSreader::(statics) |
---|
70 | |
---|
71 | int SDFITSreader::sInit = 1; |
---|
72 | int SDFITSreader::sReset = 0; |
---|
73 | int (*SDFITSreader::sALFAcalNon)[2] = (int (*)[2])(new float[16]); |
---|
74 | int (*SDFITSreader::sALFAcalNoff)[2] = (int (*)[2])(new float[16]); |
---|
75 | float (*SDFITSreader::sALFAcalOn)[2] = (float (*)[2])(new float[16]); |
---|
76 | float (*SDFITSreader::sALFAcalOff)[2] = (float (*)[2])(new float[16]); |
---|
77 | float (*SDFITSreader::sALFAcal)[2] = (float (*)[2])(new float[16]); |
---|
78 | |
---|
79 | //------------------------------------------------- SDFITSreader::SDFITSreader |
---|
80 | |
---|
81 | SDFITSreader::SDFITSreader() |
---|
82 | { |
---|
83 | // Default constructor. |
---|
84 | cSDptr = 0x0; |
---|
85 | |
---|
86 | // Allocate space for data descriptors. |
---|
87 | cData = new FITSparm[NDATA]; |
---|
88 | |
---|
89 | for (int iData = 0; iData < NDATA; iData++) { |
---|
90 | cData[iData].colnum = -1; |
---|
91 | } |
---|
92 | |
---|
93 | // Initialize pointers. |
---|
94 | cBeams = 0x0; |
---|
95 | cIFs = 0x0; |
---|
96 | cStartChan = 0x0; |
---|
97 | cEndChan = 0x0; |
---|
98 | cRefChan = 0x0; |
---|
99 | |
---|
100 | // By default, messages are written to stderr. |
---|
101 | initMsg(); |
---|
102 | } |
---|
103 | |
---|
104 | //------------------------------------------------ SDFITSreader::~SDFITSreader |
---|
105 | |
---|
106 | SDFITSreader::~SDFITSreader() |
---|
107 | { |
---|
108 | close(); |
---|
109 | |
---|
110 | delete [] cData; |
---|
111 | } |
---|
112 | |
---|
113 | //--------------------------------------------------------- SDFITSreader::open |
---|
114 | |
---|
115 | // Open an SDFITS file for reading. |
---|
116 | |
---|
117 | int SDFITSreader::open( |
---|
118 | char* sdName, |
---|
119 | int &nBeam, |
---|
120 | int* &beams, |
---|
121 | int &nIF, |
---|
122 | int* &IFs, |
---|
123 | int* &nChan, |
---|
124 | int* &nPol, |
---|
125 | int* &haveXPol, |
---|
126 | int &haveBase, |
---|
127 | int &haveSpectra, |
---|
128 | int &extraSysCal) |
---|
129 | { |
---|
130 | // Clear the message stack. |
---|
131 | clearMsg(); |
---|
132 | |
---|
133 | if (cSDptr) { |
---|
134 | close(); |
---|
135 | } |
---|
136 | |
---|
137 | // Open the SDFITS file. |
---|
138 | cStatus = 0; |
---|
139 | if (fits_open_file(&cSDptr, sdName, READONLY, &cStatus)) { |
---|
140 | sprintf(cMsg, "ERROR: Failed to open SDFITS file\n %s", sdName); |
---|
141 | logMsg(cMsg); |
---|
142 | return 1; |
---|
143 | } |
---|
144 | |
---|
145 | // Move to the SDFITS extension. |
---|
146 | cALFA = cALFA_BD = cALFA_CIMA = 0; |
---|
147 | if (fits_movnam_hdu(cSDptr, BINARY_TBL, "SINGLE DISH", 0, &cStatus)) { |
---|
148 | // No SDFITS table, look for BDFITS or CIMAFITS. |
---|
149 | cStatus = 0; |
---|
150 | if (fits_movnam_hdu(cSDptr, BINARY_TBL, "BDFITS", 0, &cStatus) == 0) { |
---|
151 | cALFA_BD = 1; |
---|
152 | |
---|
153 | } else { |
---|
154 | cStatus = 0; |
---|
155 | if (fits_movnam_hdu(cSDptr, BINARY_TBL, "CIMAFITS", 0, &cStatus) == 0) { |
---|
156 | cALFA_CIMA = 1; |
---|
157 | |
---|
158 | // Check for later versions of CIMAFITS. |
---|
159 | float version; |
---|
160 | readParm("VERSION", TFLOAT, &version); |
---|
161 | if (version >= 2.0f) cALFA_CIMA = int(version); |
---|
162 | |
---|
163 | } else { |
---|
164 | logMsg("ERROR: Failed to locate SDFITS binary table."); |
---|
165 | close(); |
---|
166 | return 1; |
---|
167 | } |
---|
168 | } |
---|
169 | |
---|
170 | // Arecibo ALFA data of some kind. |
---|
171 | cALFA = 1; |
---|
172 | if (sInit) { |
---|
173 | for (int iBeam = 0; iBeam < 8; iBeam++) { |
---|
174 | for (int iPol = 0; iPol < 2; iPol++) { |
---|
175 | sALFAcalOn[iBeam][iPol] = 0.0f; |
---|
176 | sALFAcalOff[iBeam][iPol] = 0.0f; |
---|
177 | |
---|
178 | // Nominal factor to calibrate spectra in Jy. |
---|
179 | sALFAcal[iBeam][iPol] = 3.0f; |
---|
180 | } |
---|
181 | } |
---|
182 | |
---|
183 | sInit = 0; |
---|
184 | } |
---|
185 | } |
---|
186 | |
---|
187 | // GBT data. |
---|
188 | char telescope[32]; |
---|
189 | readParm("TELESCOP", TSTRING, telescope); // Core. |
---|
190 | cGBT = strncmp(telescope, "GBT", 3) == 0 || |
---|
191 | strncmp(telescope, "NRAO_GBT", 8) == 0; |
---|
192 | |
---|
193 | |
---|
194 | // Check that the DATA array column is present. |
---|
195 | findData(DATA, "DATA", TFLOAT); |
---|
196 | haveSpectra = cHaveSpectra = cData[DATA].colnum > 0; |
---|
197 | |
---|
198 | cNAxisTime = 0; |
---|
199 | if (cHaveSpectra) { |
---|
200 | // Find the number of data axes (must be the same for each IF). |
---|
201 | cNAxes = 5; |
---|
202 | if (readDim(DATA, 1, &cNAxes, cNAxis)) { |
---|
203 | logMsg(); |
---|
204 | close(); |
---|
205 | return 1; |
---|
206 | } |
---|
207 | |
---|
208 | if (cALFA_BD) { |
---|
209 | // ALFA BDFITS: variable length arrays don't actually vary and there is |
---|
210 | // no TDIM (or MAXISn) card; use the LAGS_IN value. |
---|
211 | cNAxes = 5; |
---|
212 | readParm("LAGS_IN", TLONG, cNAxis); |
---|
213 | cNAxis[1] = 1; |
---|
214 | cNAxis[2] = 1; |
---|
215 | cNAxis[3] = 1; |
---|
216 | cNAxis[4] = 1; |
---|
217 | cData[DATA].nelem = cNAxis[0]; |
---|
218 | } |
---|
219 | |
---|
220 | if (cNAxes < 4) { |
---|
221 | // Need at least four axes (for now). |
---|
222 | logMsg("ERROR: DATA array contains fewer than four axes."); |
---|
223 | close(); |
---|
224 | return 1; |
---|
225 | } else if (cNAxes > 5) { |
---|
226 | // We support up to five axes. |
---|
227 | logMsg("ERROR: DATA array contains more than five axes."); |
---|
228 | close(); |
---|
229 | return 1; |
---|
230 | } |
---|
231 | |
---|
232 | findData(FLAGGED, "FLAGGED", TBYTE); |
---|
233 | |
---|
234 | } else { |
---|
235 | // DATA column not present, check for a DATAXED keyword. |
---|
236 | findData(DATAXED, "DATAXED", TSTRING); |
---|
237 | if (cData[DATAXED].colnum < 0) { |
---|
238 | logMsg("ERROR: DATA array column absent from binary table."); |
---|
239 | close(); |
---|
240 | return 1; |
---|
241 | } |
---|
242 | |
---|
243 | // Determine the number of axes and their length. |
---|
244 | char dataxed[32]; |
---|
245 | readParm("DATAXED", TSTRING, dataxed); |
---|
246 | |
---|
247 | for (int iaxis = 0; iaxis < 5; iaxis++) cNAxis[iaxis] = 0; |
---|
248 | sscanf(dataxed, "(%ld,%ld,%ld,%ld,%ld)", cNAxis, cNAxis+1, cNAxis+2, |
---|
249 | cNAxis+3, cNAxis+4); |
---|
250 | for (int iaxis = 4; iaxis > -1; iaxis--) { |
---|
251 | if (cNAxis[iaxis] == 0) cNAxes = iaxis; |
---|
252 | } |
---|
253 | } |
---|
254 | |
---|
255 | char *CTYPE[5] = {"CTYPE1", "CTYPE2", "CTYPE3", "CTYPE4", "CTYPE5"}; |
---|
256 | char *CRPIX[5] = {"CRPIX1", "CRPIX2", "CRPIX3", "CRPIX4", "CRPIX5"}; |
---|
257 | char *CRVAL[5] = {"CRVAL1", "CRVAL2", "CRVAL3", "CRVAL4", "CRVAL5"}; |
---|
258 | char *CDELT[5] = {"CDELT1", "CDELT2", "CDELT3", "CDELT4", "CDELT5"}; |
---|
259 | |
---|
260 | // Find required DATA array axes. |
---|
261 | char ctype[5][72]; |
---|
262 | for (int iaxis = 0; iaxis < cNAxes; iaxis++) { |
---|
263 | strcpy(ctype[iaxis], ""); |
---|
264 | readParm(CTYPE[iaxis], TSTRING, ctype[iaxis]); // Core. |
---|
265 | } |
---|
266 | |
---|
267 | if (cStatus) { |
---|
268 | logMsg(); |
---|
269 | close(); |
---|
270 | return 1; |
---|
271 | } |
---|
272 | |
---|
273 | char *fqCRVAL = 0; |
---|
274 | char *fqCDELT = 0; |
---|
275 | char *fqCRPIX = 0; |
---|
276 | char *raCRVAL = 0; |
---|
277 | char *decCRVAL = 0; |
---|
278 | char *timeCRVAL = 0; |
---|
279 | char *timeCDELT = 0; |
---|
280 | char *timeCRPIX = 0; |
---|
281 | char *beamCRVAL = 0; |
---|
282 | |
---|
283 | cFreqAxis = -1; |
---|
284 | cStokesAxis = -1; |
---|
285 | cRaAxis = -1; |
---|
286 | cDecAxis = -1; |
---|
287 | cTimeAxis = -1; |
---|
288 | cBeamAxis = -1; |
---|
289 | |
---|
290 | for (int iaxis = 0; iaxis < cNAxes; iaxis++) { |
---|
291 | if (strncmp(ctype[iaxis], "FREQ", 4) == 0) { |
---|
292 | cFreqAxis = iaxis; |
---|
293 | fqCRVAL = CRVAL[iaxis]; |
---|
294 | fqCDELT = CDELT[iaxis]; |
---|
295 | fqCRPIX = CRPIX[iaxis]; |
---|
296 | |
---|
297 | } else if (strncmp(ctype[iaxis], "STOKES", 6) == 0) { |
---|
298 | cStokesAxis = iaxis; |
---|
299 | |
---|
300 | } else if (strncmp(ctype[iaxis], "RA", 2) == 0) { |
---|
301 | cRaAxis = iaxis; |
---|
302 | raCRVAL = CRVAL[iaxis]; |
---|
303 | |
---|
304 | } else if (strncmp(ctype[iaxis], "DEC", 3) == 0) { |
---|
305 | cDecAxis = iaxis; |
---|
306 | decCRVAL = CRVAL[iaxis]; |
---|
307 | |
---|
308 | } else if (strcmp(ctype[iaxis], "TIME") == 0) { |
---|
309 | // TIME (UTC seconds since midnight); axis type, if present, takes |
---|
310 | // precedence over keyword. |
---|
311 | cTimeAxis = iaxis; |
---|
312 | timeCRVAL = CRVAL[iaxis]; |
---|
313 | |
---|
314 | // Check for non-degeneracy. |
---|
315 | if ((cNAxisTime = cNAxis[iaxis]) > 1) { |
---|
316 | timeCDELT = CDELT[iaxis]; |
---|
317 | timeCRPIX = CRPIX[iaxis]; |
---|
318 | sprintf(cMsg, "DATA array contains a TIME axis of length %ld.", |
---|
319 | cNAxisTime); |
---|
320 | logMsg(cMsg); |
---|
321 | } |
---|
322 | |
---|
323 | } else if (strcmp(ctype[iaxis], "BEAM") == 0) { |
---|
324 | // BEAM can be a keyword or axis type. |
---|
325 | cBeamAxis = iaxis; |
---|
326 | beamCRVAL = CRVAL[iaxis]; |
---|
327 | } |
---|
328 | } |
---|
329 | |
---|
330 | if (cALFA_BD) { |
---|
331 | // Fixed in ALFA CIMAFITS. |
---|
332 | cRaAxis = 2; |
---|
333 | raCRVAL = "CRVAL2A"; |
---|
334 | |
---|
335 | cDecAxis = 3; |
---|
336 | decCRVAL = "CRVAL3A"; |
---|
337 | } |
---|
338 | |
---|
339 | // Check that required axes are present. |
---|
340 | if (cFreqAxis < 0 || cStokesAxis < 0 || cRaAxis < 0 || cDecAxis < 0) { |
---|
341 | logMsg("ERROR: Could not find required DATA array axes."); |
---|
342 | close(); |
---|
343 | return 1; |
---|
344 | } |
---|
345 | |
---|
346 | // Set up machinery for data retrieval. |
---|
347 | findData(SCAN, "SCAN", TINT); // Shared. |
---|
348 | findData(CYCLE, "CYCLE", TINT); // Additional. |
---|
349 | findData(DATE_OBS, "DATE-OBS", TSTRING); // Core. |
---|
350 | |
---|
351 | if (cTimeAxis >= 0) { |
---|
352 | // The DATA array has a TIME axis. |
---|
353 | if (cNAxisTime > 1) { |
---|
354 | // Non-degenerate. |
---|
355 | findData(TimeRefVal, timeCRVAL, TDOUBLE); // Time reference value. |
---|
356 | findData(TimeDelt, timeCDELT, TDOUBLE); // Time increment. |
---|
357 | findData(TimeRefPix, timeCRPIX, TFLOAT); // Time reference pixel. |
---|
358 | } else { |
---|
359 | // Degenerate, treat its like a simple TIME keyword. |
---|
360 | findData(TIME, timeCRVAL, TDOUBLE); |
---|
361 | } |
---|
362 | |
---|
363 | } else { |
---|
364 | findData(TIME, "TIME", TDOUBLE); // Core. |
---|
365 | } |
---|
366 | |
---|
367 | findData(EXPOSURE, "EXPOSURE", TFLOAT); // Core. |
---|
368 | findData(OBJECT, "OBJECT", TSTRING); // Core. |
---|
369 | findData(OBJ_RA, "OBJ-RA", TDOUBLE); // Additional. |
---|
370 | findData(OBJ_DEC, "OBJ-DEC", TDOUBLE); // Additional. |
---|
371 | findData(RESTFRQ, "RESTFRQ", TDOUBLE); // Additional. |
---|
372 | findData(OBSMODE, "OBSMODE", TSTRING); // Shared. |
---|
373 | |
---|
374 | findData(BEAM, "BEAM", TSHORT); // Additional. |
---|
375 | findData(IF, "IF", TSHORT); // Additional. |
---|
376 | findData(FqRefVal, fqCRVAL, TDOUBLE); // Frequency reference value. |
---|
377 | findData(FqDelt, fqCDELT, TDOUBLE); // Frequency increment. |
---|
378 | findData(FqRefPix, fqCRPIX, TFLOAT); // Frequency reference pixel. |
---|
379 | findData(RA, raCRVAL, TDOUBLE); // Right ascension. |
---|
380 | findData(DEC, decCRVAL, TDOUBLE); // Declination. |
---|
381 | findData(SCANRATE, "SCANRATE", TFLOAT); // Additional. |
---|
382 | |
---|
383 | findData(TSYS, "TSYS", TFLOAT); // Core. |
---|
384 | findData(CALFCTR, "CALFCTR", TFLOAT); // Additional. |
---|
385 | findData(XCALFCTR, "XCALFCTR", TFLOAT); // Additional. |
---|
386 | findData(BASELIN, "BASELIN", TFLOAT); // Additional. |
---|
387 | findData(BASESUB, "BASESUB", TFLOAT); // Additional. |
---|
388 | findData(XPOLDATA, "XPOLDATA", TFLOAT); // Additional. |
---|
389 | |
---|
390 | findData(REFBEAM, "REFBEAM", TSHORT); // Additional. |
---|
391 | findData(TCAL, "TCAL", TFLOAT); // Shared. |
---|
392 | findData(TCALTIME, "TCALTIME", TSTRING); // Additional. |
---|
393 | findData(AZIMUTH, "AZIMUTH", TFLOAT); // Shared. |
---|
394 | findData(ELEVATIO, "ELEVATIO", TFLOAT); // Shared. |
---|
395 | findData(PARANGLE, "PARANGLE", TFLOAT); // Additional. |
---|
396 | findData(FOCUSAXI, "FOCUSAXI", TFLOAT); // Additional. |
---|
397 | findData(FOCUSTAN, "FOCUSTAN", TFLOAT); // Additional. |
---|
398 | findData(FOCUSROT, "FOCUSROT", TFLOAT); // Additional. |
---|
399 | findData(TAMBIENT, "TAMBIENT", TFLOAT); // Shared. |
---|
400 | findData(PRESSURE, "PRESSURE", TFLOAT); // Shared. |
---|
401 | findData(HUMIDITY, "HUMIDITY", TFLOAT); // Shared. |
---|
402 | findData(WINDSPEE, "WINDSPEE", TFLOAT); // Shared. |
---|
403 | findData(WINDDIRE, "WINDDIRE", TFLOAT); // Shared. |
---|
404 | |
---|
405 | if (cStatus) { |
---|
406 | logMsg(); |
---|
407 | close(); |
---|
408 | return 1; |
---|
409 | } |
---|
410 | |
---|
411 | |
---|
412 | // Check for alternative column names. |
---|
413 | if (cALFA) { |
---|
414 | // ALFA data. |
---|
415 | cALFAscan = 0; |
---|
416 | cScanNo = 0; |
---|
417 | if (cALFA_CIMA) { |
---|
418 | findData(SCAN, "SCAN_ID", TINT); |
---|
419 | if (cALFA_CIMA > 1) { |
---|
420 | // Note that RECNUM increases by cNAxisTime per row. |
---|
421 | findData(CYCLE, "RECNUM", TINT); |
---|
422 | } else { |
---|
423 | findData(CYCLE, "SUBSCAN", TINT); |
---|
424 | } |
---|
425 | } else if (cALFA_BD) { |
---|
426 | findData(SCAN, "SCAN_NUMBER", TINT); |
---|
427 | findData(CYCLE, "PATTERN_NUMBER", TINT); |
---|
428 | } |
---|
429 | } else { |
---|
430 | readData(SCAN, 1, &cFirstScanNo); |
---|
431 | } |
---|
432 | |
---|
433 | cCycleNo = 0; |
---|
434 | cLastUTC = 0.0; |
---|
435 | |
---|
436 | // Beam number, 1-relative by default. |
---|
437 | cBeam_1rel = 1; |
---|
438 | if (cALFA) { |
---|
439 | // ALFA INPUT_ID, 0-relative (overrides BEAM column if present). |
---|
440 | findData(BEAM, "INPUT_ID", TSHORT); |
---|
441 | cBeam_1rel = 0; |
---|
442 | |
---|
443 | } else if (cData[BEAM].colnum < 0) { |
---|
444 | if (beamCRVAL) { |
---|
445 | // There is a BEAM axis. |
---|
446 | findData(BEAM, beamCRVAL, TDOUBLE); |
---|
447 | } else { |
---|
448 | // ms2sdfits output, 0-relative "feed" number. |
---|
449 | findData(BEAM, "MAIN_FEED1", TSHORT); |
---|
450 | cBeam_1rel = 0; |
---|
451 | } |
---|
452 | } |
---|
453 | |
---|
454 | // IF number, 1-relative by default. |
---|
455 | cIF_1rel = 1; |
---|
456 | if (cALFA && cData[IF].colnum < 0) { |
---|
457 | // ALFA data, 0-relative. |
---|
458 | if (cALFA_CIMA > 1) { |
---|
459 | findData(IF, "IFN", TSHORT); |
---|
460 | } else { |
---|
461 | findData(IF, "IFVAL", TSHORT); |
---|
462 | } |
---|
463 | cIF_1rel = 0; |
---|
464 | } |
---|
465 | |
---|
466 | // ms2sdfits writes a scalar "TSYS" column that averages the polarizations. |
---|
467 | int colnum; |
---|
468 | findCol("SYSCAL_TSYS", &colnum); |
---|
469 | if (colnum > 0) { |
---|
470 | // This contains the vector Tsys. |
---|
471 | findData(TSYS, "SYSCAL_TSYS", TFLOAT); |
---|
472 | } |
---|
473 | |
---|
474 | // XPOLDATA? |
---|
475 | |
---|
476 | if (cData[SCANRATE].colnum < 0) { |
---|
477 | findData(SCANRATE, "FIELD_POINTING_DIR_RATE", TFLOAT); |
---|
478 | } |
---|
479 | |
---|
480 | if (cData[RESTFRQ].colnum < 0) { |
---|
481 | findData(RESTFRQ, "RESTFREQ", TDOUBLE); |
---|
482 | if (cData[RESTFRQ].colnum < 0) { |
---|
483 | findData(RESTFRQ, "SPECTRAL_WINDOW_REST_FREQUENCY", TDOUBLE); |
---|
484 | } |
---|
485 | } |
---|
486 | |
---|
487 | if (cData[OBJ_RA].colnum < 0) { |
---|
488 | findData(OBJ_RA, "SOURCE_DIRECTION", TDOUBLE); |
---|
489 | } |
---|
490 | if (cData[OBJ_DEC].colnum < 0) { |
---|
491 | findData(OBJ_DEC, "SOURCE_DIRECTION", TDOUBLE); |
---|
492 | } |
---|
493 | |
---|
494 | // REFBEAM? |
---|
495 | |
---|
496 | if (cData[TCAL].colnum < 0) { |
---|
497 | findData(TCAL, "SYSCAL_TCAL", TFLOAT); |
---|
498 | } else if (cALFA_BD) { |
---|
499 | // ALFA BDFITS has a different TCAL with 64 elements - kill it! |
---|
500 | findData(TCAL, "NO NO NO", TFLOAT); |
---|
501 | } |
---|
502 | |
---|
503 | if (cALFA_BD) { |
---|
504 | // ALFA BDFITS. |
---|
505 | findData(AZIMUTH, "CRVAL2B", TFLOAT); |
---|
506 | findData(ELEVATIO, "CRVAL3B", TFLOAT); |
---|
507 | } |
---|
508 | |
---|
509 | if (cALFA) { |
---|
510 | // ALFA data. |
---|
511 | findData(PARANGLE, "PARA_ANG", TFLOAT); |
---|
512 | } |
---|
513 | |
---|
514 | if (cData[TAMBIENT].colnum < 0) { |
---|
515 | findData(TAMBIENT, "WEATHER_TEMPERATURE", TFLOAT); |
---|
516 | } |
---|
517 | |
---|
518 | if (cData[PRESSURE].colnum < 0) { |
---|
519 | findData(PRESSURE, "WEATHER_PRESSURE", TFLOAT); |
---|
520 | } |
---|
521 | |
---|
522 | if (cData[HUMIDITY].colnum < 0) { |
---|
523 | findData(HUMIDITY, "WEATHER_REL_HUMIDITY", TFLOAT); |
---|
524 | } |
---|
525 | |
---|
526 | if (cData[WINDSPEE].colnum < 0) { |
---|
527 | findData(WINDSPEE, "WEATHER_WIND_SPEED", TFLOAT); |
---|
528 | } |
---|
529 | |
---|
530 | if (cData[WINDDIRE].colnum < 0) { |
---|
531 | findData(WINDDIRE, "WEATHER_WIND_DIRECTION", TFLOAT); |
---|
532 | } |
---|
533 | |
---|
534 | |
---|
535 | // Find the number of rows. |
---|
536 | fits_get_num_rows(cSDptr, &cNRow, &cStatus); |
---|
537 | if (!cNRow) { |
---|
538 | logMsg("ERROR: Table contains no entries."); |
---|
539 | close(); |
---|
540 | return 1; |
---|
541 | } |
---|
542 | |
---|
543 | |
---|
544 | // Determine which beams are present in the data. |
---|
545 | if (cData[BEAM].colnum > 0) { |
---|
546 | short *beamCol = new short[cNRow]; |
---|
547 | short beamNul = 1; |
---|
548 | int anynul; |
---|
549 | if (fits_read_col(cSDptr, TSHORT, cData[BEAM].colnum, 1, 1, cNRow, |
---|
550 | &beamNul, beamCol, &anynul, &cStatus)) { |
---|
551 | delete [] beamCol; |
---|
552 | logMsg(); |
---|
553 | close(); |
---|
554 | return 1; |
---|
555 | } |
---|
556 | |
---|
557 | // Find the maximum beam number. |
---|
558 | cNBeam = cBeam_1rel - 1; |
---|
559 | for (int irow = 0; irow < cNRow; irow++) { |
---|
560 | if (beamCol[irow] > cNBeam) { |
---|
561 | cNBeam = beamCol[irow]; |
---|
562 | } |
---|
563 | |
---|
564 | // Check validity. |
---|
565 | if (beamCol[irow] < cBeam_1rel) { |
---|
566 | delete [] beamCol; |
---|
567 | logMsg("ERROR: SDFITS file contains invalid beam number."); |
---|
568 | close(); |
---|
569 | return 1; |
---|
570 | } |
---|
571 | } |
---|
572 | |
---|
573 | if (!cBeam_1rel) cNBeam++; |
---|
574 | |
---|
575 | // Find all beams present in the data. |
---|
576 | cBeams = new int[cNBeam]; |
---|
577 | for (int ibeam = 0; ibeam < cNBeam; ibeam++) { |
---|
578 | cBeams[ibeam] = 0; |
---|
579 | } |
---|
580 | |
---|
581 | for (int irow = 0; irow < cNRow; irow++) { |
---|
582 | cBeams[beamCol[irow] - cBeam_1rel] = 1; |
---|
583 | } |
---|
584 | |
---|
585 | delete [] beamCol; |
---|
586 | |
---|
587 | } else { |
---|
588 | // No BEAM column. |
---|
589 | cNBeam = 1; |
---|
590 | cBeams = new int[1]; |
---|
591 | cBeams[0] = 1; |
---|
592 | } |
---|
593 | |
---|
594 | // Passing back the address of the array allows PKSFITSreader::select() to |
---|
595 | // modify its elements directly. |
---|
596 | nBeam = cNBeam; |
---|
597 | beams = cBeams; |
---|
598 | |
---|
599 | |
---|
600 | // Determine which IFs are present in the data. |
---|
601 | if (cData[IF].colnum > 0) { |
---|
602 | short *IFCol = new short[cNRow]; |
---|
603 | short IFNul = 1; |
---|
604 | int anynul; |
---|
605 | if (fits_read_col(cSDptr, TSHORT, cData[IF].colnum, 1, 1, cNRow, |
---|
606 | &IFNul, IFCol, &anynul, &cStatus)) { |
---|
607 | delete [] IFCol; |
---|
608 | logMsg(); |
---|
609 | close(); |
---|
610 | return 1; |
---|
611 | } |
---|
612 | |
---|
613 | // Find the maximum IF number. |
---|
614 | cNIF = cIF_1rel - 1; |
---|
615 | for (int irow = 0; irow < cNRow; irow++) { |
---|
616 | if (IFCol[irow] > cNIF) { |
---|
617 | cNIF = IFCol[irow]; |
---|
618 | } |
---|
619 | |
---|
620 | // Check validity. |
---|
621 | if (IFCol[irow] < cIF_1rel) { |
---|
622 | delete [] IFCol; |
---|
623 | logMsg("ERROR: SDFITS file contains invalid IF number."); |
---|
624 | close(); |
---|
625 | return 1; |
---|
626 | } |
---|
627 | } |
---|
628 | |
---|
629 | if (!cIF_1rel) cNIF++; |
---|
630 | |
---|
631 | // Find all IFs present in the data. |
---|
632 | cIFs = new int[cNIF]; |
---|
633 | cNChan = new int[cNIF]; |
---|
634 | cNPol = new int[cNIF]; |
---|
635 | cHaveXPol = new int[cNIF]; |
---|
636 | cGetXPol = 0; |
---|
637 | |
---|
638 | for (int iIF = 0; iIF < cNIF; iIF++) { |
---|
639 | cIFs[iIF] = 0; |
---|
640 | cNChan[iIF] = 0; |
---|
641 | cNPol[iIF] = 0; |
---|
642 | cHaveXPol[iIF] = 0; |
---|
643 | } |
---|
644 | |
---|
645 | for (int irow = 0; irow < cNRow; irow++) { |
---|
646 | int iIF = IFCol[irow] - cIF_1rel; |
---|
647 | if (cIFs[iIF] == 0) { |
---|
648 | cIFs[iIF] = 1; |
---|
649 | |
---|
650 | // Find the axis lengths. |
---|
651 | if (cHaveSpectra) { |
---|
652 | if (cData[DATA].nelem < 0) { |
---|
653 | // Variable dimension array. |
---|
654 | if (readDim(DATA, irow+1, &cNAxes, cNAxis)) { |
---|
655 | logMsg(); |
---|
656 | close(); |
---|
657 | return 1; |
---|
658 | } |
---|
659 | } |
---|
660 | |
---|
661 | } else { |
---|
662 | if (cData[DATAXED].colnum > 0) { |
---|
663 | char dataxed[32]; |
---|
664 | readParm("DATAXED", TSTRING, dataxed); |
---|
665 | |
---|
666 | sscanf(dataxed, "(%ld,%ld,%ld,%ld,%ld)", cNAxis, cNAxis+1, |
---|
667 | cNAxis+2, cNAxis+3, cNAxis+4); |
---|
668 | } |
---|
669 | } |
---|
670 | |
---|
671 | // Number of channels and polarizations. |
---|
672 | cNChan[iIF] = cNAxis[cFreqAxis]; |
---|
673 | cNPol[iIF] = cNAxis[cStokesAxis]; |
---|
674 | cHaveXPol[iIF] = 0; |
---|
675 | |
---|
676 | // Is cross-polarization data present? |
---|
677 | if (cData[XPOLDATA].colnum > 0) { |
---|
678 | // Check that it conforms. |
---|
679 | int nAxis; |
---|
680 | long nAxes[2]; |
---|
681 | |
---|
682 | if (readDim(XPOLDATA, irow+1, &nAxis, nAxes)) { |
---|
683 | logMsg(); |
---|
684 | close(); |
---|
685 | return 1; |
---|
686 | } |
---|
687 | |
---|
688 | // Default is to get it if we have it. |
---|
689 | if (nAxis == 2 && |
---|
690 | nAxes[0] == 2 && |
---|
691 | nAxes[1] == cNChan[iIF]) { |
---|
692 | cGetXPol = cHaveXPol[iIF] = 1; |
---|
693 | } |
---|
694 | } |
---|
695 | } |
---|
696 | } |
---|
697 | |
---|
698 | delete [] IFCol; |
---|
699 | |
---|
700 | } else { |
---|
701 | // No IF column. |
---|
702 | cNIF = 1; |
---|
703 | cIFs = new int[1]; |
---|
704 | cIFs[0] = 1; |
---|
705 | |
---|
706 | cNChan = new int[1]; |
---|
707 | cNPol = new int[1]; |
---|
708 | cHaveXPol = new int[1]; |
---|
709 | cGetXPol = 0; |
---|
710 | |
---|
711 | // Number of channels and polarizations. |
---|
712 | cNChan[0] = cNAxis[cFreqAxis]; |
---|
713 | cNPol[0] = cNAxis[cStokesAxis]; |
---|
714 | cHaveXPol[0] = 0; |
---|
715 | } |
---|
716 | |
---|
717 | if (cALFA && cALFA_CIMA < 2) { |
---|
718 | // Older ALFA data labels each polarization as a separate IF. |
---|
719 | cNPol[0] = cNIF; |
---|
720 | cNIF = 1; |
---|
721 | } |
---|
722 | |
---|
723 | // Passing back the address of the array allows PKSFITSreader::select() to |
---|
724 | // modify its elements directly. |
---|
725 | nIF = cNIF; |
---|
726 | IFs = cIFs; |
---|
727 | |
---|
728 | nChan = cNChan; |
---|
729 | nPol = cNPol; |
---|
730 | haveXPol = cHaveXPol; |
---|
731 | |
---|
732 | |
---|
733 | // Default channel range selection. |
---|
734 | cStartChan = new int[cNIF]; |
---|
735 | cEndChan = new int[cNIF]; |
---|
736 | cRefChan = new int[cNIF]; |
---|
737 | |
---|
738 | for (int iIF = 0; iIF < cNIF; iIF++) { |
---|
739 | cStartChan[iIF] = 1; |
---|
740 | cEndChan[iIF] = cNChan[iIF]; |
---|
741 | cRefChan[iIF] = cNChan[iIF]/2 + 1; |
---|
742 | } |
---|
743 | |
---|
744 | // Default is to get it if we have it. |
---|
745 | cGetSpectra = cHaveSpectra; |
---|
746 | |
---|
747 | |
---|
748 | // Are baseline parameters present? |
---|
749 | cHaveBase = 0; |
---|
750 | if (cData[BASELIN].colnum) { |
---|
751 | // Check that it conforms. |
---|
752 | int nAxis, status = 0; |
---|
753 | long nAxes[2]; |
---|
754 | |
---|
755 | if (fits_read_tdim(cSDptr, cData[BASELIN].colnum, 2, &nAxis, nAxes, |
---|
756 | &status) == 0) { |
---|
757 | cHaveBase = (nAxis == 2); |
---|
758 | } |
---|
759 | } |
---|
760 | haveBase = cHaveBase; |
---|
761 | |
---|
762 | |
---|
763 | // Is extra system calibration data available? |
---|
764 | cExtraSysCal = 0; |
---|
765 | for (int iparm = REFBEAM; iparm < NDATA; iparm++) { |
---|
766 | if (cData[iparm].colnum >= 0) { |
---|
767 | cExtraSysCal = 1; |
---|
768 | break; |
---|
769 | } |
---|
770 | } |
---|
771 | |
---|
772 | extraSysCal = cExtraSysCal; |
---|
773 | |
---|
774 | |
---|
775 | // Extras for ALFA data. |
---|
776 | cALFAacc = 0.0f; |
---|
777 | if (cALFA_CIMA > 1) { |
---|
778 | // FFTs per second when the Mock correlator operates in RFI blanking mode. |
---|
779 | readData("PHFFTACC", TFLOAT, 0, &cALFAacc); |
---|
780 | } |
---|
781 | |
---|
782 | |
---|
783 | cRow = 0; |
---|
784 | cTimeIdx = cNAxisTime; |
---|
785 | |
---|
786 | return 0; |
---|
787 | } |
---|
788 | |
---|
789 | //---------------------------------------------------- SDFITSreader::getHeader |
---|
790 | |
---|
791 | // Get parameters describing the data. |
---|
792 | |
---|
793 | int SDFITSreader::getHeader( |
---|
794 | char observer[32], |
---|
795 | char project[32], |
---|
796 | char telescope[32], |
---|
797 | double antPos[3], |
---|
798 | char obsMode[32], |
---|
799 | char bunit[32], |
---|
800 | float &equinox, |
---|
801 | char radecsys[32], |
---|
802 | char dopplerFrame[32], |
---|
803 | char datobs[32], |
---|
804 | double &utc, |
---|
805 | double &refFreq, |
---|
806 | double &bandwidth) |
---|
807 | { |
---|
808 | // Has the file been opened? |
---|
809 | if (!cSDptr) { |
---|
810 | return 1; |
---|
811 | } |
---|
812 | |
---|
813 | // Read parameter values. |
---|
814 | readParm("OBSERVER", TSTRING, observer); // Shared. |
---|
815 | readParm("PROJID", TSTRING, project); // Shared. |
---|
816 | readParm("TELESCOP", TSTRING, telescope); // Core. |
---|
817 | |
---|
818 | antPos[0] = 0.0; |
---|
819 | antPos[1] = 0.0; |
---|
820 | antPos[2] = 0.0; |
---|
821 | if (readParm("ANTENNA_POSITION", TDOUBLE, antPos)) { |
---|
822 | readParm("OBSGEO-X", TDOUBLE, antPos); // Additional. |
---|
823 | readParm("OBSGEO-Y", TDOUBLE, antPos + 1); // Additional. |
---|
824 | readParm("OBSGEO-Z", TDOUBLE, antPos + 2); // Additional. |
---|
825 | } |
---|
826 | |
---|
827 | if (antPos[0] == 0.0) { |
---|
828 | if (strncmp(telescope, "ATPKS", 5) == 0) { |
---|
829 | // Parkes coordinates. |
---|
830 | antPos[0] = -4554232.087; |
---|
831 | antPos[1] = 2816759.046; |
---|
832 | antPos[2] = -3454035.950; |
---|
833 | } else if (strncmp(telescope, "ATMOPRA", 7) == 0) { |
---|
834 | // Mopra coordinates. |
---|
835 | antPos[0] = -4682768.630; |
---|
836 | antPos[1] = 2802619.060; |
---|
837 | antPos[2] = -3291759.900; |
---|
838 | } else if (strncmp(telescope, "ARECIBO", 7) == 0) { |
---|
839 | // Arecibo coordinates. |
---|
840 | antPos[0] = 2390486.900; |
---|
841 | antPos[1] = -5564731.440; |
---|
842 | antPos[2] = 1994720.450; |
---|
843 | } |
---|
844 | } |
---|
845 | |
---|
846 | readData(OBSMODE, 1, obsMode); // Shared. |
---|
847 | |
---|
848 | // Brightness unit. |
---|
849 | if (cData[DATAXED].colnum >= 0) { |
---|
850 | strcpy(bunit, "Jy"); |
---|
851 | } else { |
---|
852 | strcpy(bunit, cData[DATA].units); |
---|
853 | } |
---|
854 | |
---|
855 | if (strcmp(bunit, "JY") == 0) { |
---|
856 | bunit[1] = 'y'; |
---|
857 | } else if (strcmp(bunit, "JY/BEAM") == 0) { |
---|
858 | strcpy(bunit, "Jy/beam"); |
---|
859 | } |
---|
860 | |
---|
861 | readParm("EQUINOX", TFLOAT, &equinox); // Shared. |
---|
862 | if (cStatus == 405) { |
---|
863 | // EQUINOX was written as string value in early versions. |
---|
864 | cStatus = 0; |
---|
865 | char strtmp[32]; |
---|
866 | readParm("EQUINOX", TSTRING, strtmp); |
---|
867 | sscanf(strtmp, "%f", &equinox); |
---|
868 | } |
---|
869 | |
---|
870 | if (readParm("RADESYS", TSTRING, radecsys)) { // Additional. |
---|
871 | if (readParm("RADECSYS", TSTRING, radecsys)) { // Additional. |
---|
872 | strcpy(radecsys, ""); |
---|
873 | } |
---|
874 | } |
---|
875 | |
---|
876 | if (readParm("SPECSYS", TSTRING, dopplerFrame)) { // Additional. |
---|
877 | // Fallback value. |
---|
878 | strcpy(dopplerFrame, "TOPOCENT"); |
---|
879 | |
---|
880 | // Look for VELFRAME, written by earlier versions of Livedata. |
---|
881 | if (readParm("VELFRAME", TSTRING, dopplerFrame)) { // Additional. |
---|
882 | // No, try digging it out of the CTYPE card (AIPS convention). |
---|
883 | char keyw[9], ctype[9]; |
---|
884 | sprintf(keyw, "CTYPE%ld", cFreqAxis+1); |
---|
885 | readParm(keyw, TSTRING, ctype); |
---|
886 | |
---|
887 | if (strncmp(ctype, "FREQ-", 5) == 0) { |
---|
888 | strcpy(dopplerFrame, ctype+5); |
---|
889 | if (strcmp(dopplerFrame, "LSR") == 0) { |
---|
890 | // LSR unqualified usually means LSR (kinematic). |
---|
891 | strcpy(dopplerFrame, "LSRK"); |
---|
892 | } else if (strcmp(dopplerFrame, "HEL") == 0) { |
---|
893 | // Almost certainly barycentric. |
---|
894 | strcpy(dopplerFrame, "BARYCENT"); |
---|
895 | } |
---|
896 | } else { |
---|
897 | strcpy(dopplerFrame, ""); |
---|
898 | } |
---|
899 | } |
---|
900 | |
---|
901 | // Translate to FITS standard names. |
---|
902 | if (strncmp(dopplerFrame, "TOP", 3) == 0) { |
---|
903 | strcpy(dopplerFrame, "TOPOCENT"); |
---|
904 | } else if (strncmp(dopplerFrame, "GEO", 3) == 0) { |
---|
905 | strcpy(dopplerFrame, "GEOCENTR"); |
---|
906 | } else if (strncmp(dopplerFrame, "HEL", 3) == 0) { |
---|
907 | strcpy(dopplerFrame, "HELIOCEN"); |
---|
908 | } else if (strncmp(dopplerFrame, "BARY", 4) == 0) { |
---|
909 | strcpy(dopplerFrame, "BARYCENT"); |
---|
910 | } |
---|
911 | } |
---|
912 | |
---|
913 | if (cStatus) { |
---|
914 | logMsg(); |
---|
915 | return 1; |
---|
916 | } |
---|
917 | |
---|
918 | // Get parameters from first row of table. |
---|
919 | readTime(1, 1, datobs, utc); |
---|
920 | readData(FqRefVal, 1, &refFreq); |
---|
921 | readParm("BANDWID", TDOUBLE, &bandwidth); // Core. |
---|
922 | |
---|
923 | if (cStatus) { |
---|
924 | logMsg(); |
---|
925 | return 1; |
---|
926 | } |
---|
927 | |
---|
928 | return 0; |
---|
929 | } |
---|
930 | |
---|
931 | //-------------------------------------------------- SDFITSreader::getFreqInfo |
---|
932 | |
---|
933 | // Get frequency parameters for each IF. |
---|
934 | |
---|
935 | int SDFITSreader::getFreqInfo( |
---|
936 | int &nIF, |
---|
937 | double* &startFreq, |
---|
938 | double* &endFreq) |
---|
939 | { |
---|
940 | float fqRefPix; |
---|
941 | double fqDelt, fqRefVal; |
---|
942 | |
---|
943 | nIF = cNIF; |
---|
944 | startFreq = new double[nIF]; |
---|
945 | endFreq = new double[nIF]; |
---|
946 | |
---|
947 | if (cData[IF].colnum > 0) { |
---|
948 | short *IFCol = new short[cNRow]; |
---|
949 | short IFNul = 1; |
---|
950 | int anynul; |
---|
951 | if (fits_read_col(cSDptr, TSHORT, cData[IF].colnum, 1, 1, cNRow, |
---|
952 | &IFNul, IFCol, &anynul, &cStatus)) { |
---|
953 | delete [] IFCol; |
---|
954 | logMsg(); |
---|
955 | close(); |
---|
956 | return 1; |
---|
957 | } |
---|
958 | |
---|
959 | for (int iIF = 0; iIF < nIF; iIF++) { |
---|
960 | if (cIFs[iIF]) { |
---|
961 | // Find the first occurrence of this IF in the table. |
---|
962 | int IFno = iIF + cIF_1rel; |
---|
963 | for (int irow = 0; irow < cNRow;) { |
---|
964 | if (IFCol[irow++] == IFno) { |
---|
965 | readData(FqRefPix, irow, &fqRefPix); |
---|
966 | readData(FqRefVal, irow, &fqRefVal); |
---|
967 | readData(FqDelt, irow, &fqDelt); |
---|
968 | |
---|
969 | if (cALFA_BD) { |
---|
970 | unsigned char invert; |
---|
971 | readData("UPPERSB", TBYTE, irow, &invert); |
---|
972 | |
---|
973 | if (invert) { |
---|
974 | fqDelt = -fqDelt; |
---|
975 | } |
---|
976 | } |
---|
977 | |
---|
978 | startFreq[iIF] = fqRefVal + ( 1 - fqRefPix) * fqDelt; |
---|
979 | endFreq[iIF] = fqRefVal + (cNChan[iIF] - fqRefPix) * fqDelt; |
---|
980 | |
---|
981 | break; |
---|
982 | } |
---|
983 | } |
---|
984 | |
---|
985 | } else { |
---|
986 | startFreq[iIF] = 0.0; |
---|
987 | endFreq[iIF] = 0.0; |
---|
988 | } |
---|
989 | } |
---|
990 | |
---|
991 | delete [] IFCol; |
---|
992 | |
---|
993 | } else { |
---|
994 | // No IF column, read the first table entry. |
---|
995 | readData(FqRefPix, 1, &fqRefPix); |
---|
996 | readData(FqRefVal, 1, &fqRefVal); |
---|
997 | readData(FqDelt, 1, &fqDelt); |
---|
998 | |
---|
999 | startFreq[0] = fqRefVal + ( 1 - fqRefPix) * fqDelt; |
---|
1000 | endFreq[0] = fqRefVal + (cNChan[0] - fqRefPix) * fqDelt; |
---|
1001 | } |
---|
1002 | |
---|
1003 | return cStatus; |
---|
1004 | } |
---|
1005 | |
---|
1006 | //---------------------------------------------------- SDFITSreader::findRange |
---|
1007 | |
---|
1008 | // Find the range of the data in time and position. |
---|
1009 | |
---|
1010 | int SDFITSreader::findRange( |
---|
1011 | int &nRow, |
---|
1012 | int &nSel, |
---|
1013 | char dateSpan[2][32], |
---|
1014 | double utcSpan[2], |
---|
1015 | double* &positions) |
---|
1016 | { |
---|
1017 | // Has the file been opened? |
---|
1018 | if (!cSDptr) { |
---|
1019 | return 1; |
---|
1020 | } |
---|
1021 | |
---|
1022 | nRow = cNRow; |
---|
1023 | |
---|
1024 | // Find the number of rows selected. |
---|
1025 | short *sel = new short[cNRow]; |
---|
1026 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1027 | sel[irow] = 1; |
---|
1028 | } |
---|
1029 | |
---|
1030 | int anynul; |
---|
1031 | if (cData[BEAM].colnum > 0) { |
---|
1032 | short *beamCol = new short[cNRow]; |
---|
1033 | short beamNul = 1; |
---|
1034 | if (fits_read_col(cSDptr, TSHORT, cData[BEAM].colnum, 1, 1, cNRow, |
---|
1035 | &beamNul, beamCol, &anynul, &cStatus)) { |
---|
1036 | delete [] beamCol; |
---|
1037 | delete [] sel; |
---|
1038 | logMsg(); |
---|
1039 | return 1; |
---|
1040 | } |
---|
1041 | |
---|
1042 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1043 | if (!cBeams[beamCol[irow]-cBeam_1rel]) { |
---|
1044 | sel[irow] = 0; |
---|
1045 | } |
---|
1046 | } |
---|
1047 | |
---|
1048 | delete [] beamCol; |
---|
1049 | } |
---|
1050 | |
---|
1051 | if (cData[IF].colnum > 0) { |
---|
1052 | short *IFCol = new short[cNRow]; |
---|
1053 | short IFNul = 1; |
---|
1054 | if (fits_read_col(cSDptr, TSHORT, cData[IF].colnum, 1, 1, cNRow, |
---|
1055 | &IFNul, IFCol, &anynul, &cStatus)) { |
---|
1056 | delete [] IFCol; |
---|
1057 | delete [] sel; |
---|
1058 | logMsg(); |
---|
1059 | return 1; |
---|
1060 | } |
---|
1061 | |
---|
1062 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1063 | if (!cIFs[IFCol[irow]-cIF_1rel]) { |
---|
1064 | sel[irow] = 0; |
---|
1065 | } |
---|
1066 | } |
---|
1067 | |
---|
1068 | delete [] IFCol; |
---|
1069 | } |
---|
1070 | |
---|
1071 | nSel = 0; |
---|
1072 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1073 | nSel += sel[irow]; |
---|
1074 | } |
---|
1075 | |
---|
1076 | |
---|
1077 | // Find the time range assuming the data is in chronological order. |
---|
1078 | readTime(1, 1, dateSpan[0], utcSpan[0]); |
---|
1079 | readTime(cNRow, cNAxisTime, dateSpan[1], utcSpan[1]); |
---|
1080 | |
---|
1081 | |
---|
1082 | // Retrieve positions for selected data. |
---|
1083 | int isel = 0; |
---|
1084 | positions = new double[2*nSel]; |
---|
1085 | |
---|
1086 | if (cCoordSys == 1) { |
---|
1087 | // Horizontal (Az,El). |
---|
1088 | if (cData[AZIMUTH].colnum < 0 || |
---|
1089 | cData[ELEVATIO].colnum < 0) { |
---|
1090 | logMsg("WARNING: Azimuth/elevation information absent."); |
---|
1091 | cStatus = -1; |
---|
1092 | |
---|
1093 | } else { |
---|
1094 | float *az = new float[cNRow]; |
---|
1095 | float *el = new float[cNRow]; |
---|
1096 | readCol(AZIMUTH, az); |
---|
1097 | readCol(ELEVATIO, el); |
---|
1098 | |
---|
1099 | if (!cStatus) { |
---|
1100 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1101 | if (sel[irow]) { |
---|
1102 | positions[isel++] = az[irow] * D2R; |
---|
1103 | positions[isel++] = el[irow] * D2R; |
---|
1104 | } |
---|
1105 | } |
---|
1106 | } |
---|
1107 | |
---|
1108 | delete [] az; |
---|
1109 | delete [] el; |
---|
1110 | } |
---|
1111 | |
---|
1112 | } else if (cCoordSys == 3) { |
---|
1113 | // ZPA-EL. |
---|
1114 | if (cData[BEAM].colnum < 0 || |
---|
1115 | cData[FOCUSROT].colnum < 0 || |
---|
1116 | cData[ELEVATIO].colnum < 0) { |
---|
1117 | logMsg("WARNING: ZPA/elevation information absent."); |
---|
1118 | cStatus = -1; |
---|
1119 | |
---|
1120 | } else { |
---|
1121 | short *beam = new short[cNRow]; |
---|
1122 | float *rot = new float[cNRow]; |
---|
1123 | float *el = new float[cNRow]; |
---|
1124 | readCol(BEAM, beam); |
---|
1125 | readCol(FOCUSROT, rot); |
---|
1126 | readCol(ELEVATIO, el); |
---|
1127 | |
---|
1128 | if (!cStatus) { |
---|
1129 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1130 | if (sel[irow]) { |
---|
1131 | Int beamNo = beam[irow]; |
---|
1132 | Double zpa = rot[irow]; |
---|
1133 | if (beamNo > 1) { |
---|
1134 | // Beam geometry for the Parkes multibeam. |
---|
1135 | if (beamNo < 8) { |
---|
1136 | zpa += -60.0 + 60.0*(beamNo-2); |
---|
1137 | } else { |
---|
1138 | zpa += -90.0 + 60.0*(beamNo-8); |
---|
1139 | } |
---|
1140 | |
---|
1141 | if (zpa < -180.0) { |
---|
1142 | zpa += 360.0; |
---|
1143 | } else if (zpa > 180.0) { |
---|
1144 | zpa -= 360.0; |
---|
1145 | } |
---|
1146 | } |
---|
1147 | |
---|
1148 | positions[isel++] = zpa * D2R; |
---|
1149 | positions[isel++] = el[irow] * D2R; |
---|
1150 | } |
---|
1151 | } |
---|
1152 | } |
---|
1153 | |
---|
1154 | delete [] beam; |
---|
1155 | delete [] rot; |
---|
1156 | delete [] el; |
---|
1157 | } |
---|
1158 | |
---|
1159 | } else { |
---|
1160 | double *ra = new double[cNRow]; |
---|
1161 | double *dec = new double[cNRow]; |
---|
1162 | readCol(RA, ra); |
---|
1163 | readCol(DEC, dec); |
---|
1164 | |
---|
1165 | if (cStatus) { |
---|
1166 | delete [] ra; |
---|
1167 | delete [] dec; |
---|
1168 | goto cleanup; |
---|
1169 | } |
---|
1170 | |
---|
1171 | if (cALFA_BD) { |
---|
1172 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1173 | // Convert hours to degrees. |
---|
1174 | ra[irow] *= 15.0; |
---|
1175 | } |
---|
1176 | } |
---|
1177 | |
---|
1178 | if (cCoordSys == 0) { |
---|
1179 | // Equatorial (RA,Dec). |
---|
1180 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1181 | if (sel[irow]) { |
---|
1182 | positions[isel++] = ra[irow] * D2R; |
---|
1183 | positions[isel++] = dec[irow] * D2R; |
---|
1184 | } |
---|
1185 | } |
---|
1186 | |
---|
1187 | } else if (cCoordSys == 2) { |
---|
1188 | // Feed-plane. |
---|
1189 | if (cData[OBJ_RA].colnum < 0 || |
---|
1190 | cData[OBJ_DEC].colnum < 0 || |
---|
1191 | cData[PARANGLE].colnum < 0 || |
---|
1192 | cData[FOCUSROT].colnum < 0) { |
---|
1193 | logMsg("WARNING: Insufficient information to compute feed-plane\n" |
---|
1194 | " coordinates."); |
---|
1195 | cStatus = -1; |
---|
1196 | |
---|
1197 | } else { |
---|
1198 | double *srcRA = new double[cNRow]; |
---|
1199 | double *srcDec = new double[cNRow]; |
---|
1200 | float *par = new float[cNRow]; |
---|
1201 | float *rot = new float[cNRow]; |
---|
1202 | |
---|
1203 | readCol(OBJ_RA, srcRA); |
---|
1204 | readCol(OBJ_DEC, srcDec); |
---|
1205 | readCol(PARANGLE, par); |
---|
1206 | readCol(FOCUSROT, rot); |
---|
1207 | |
---|
1208 | if (!cStatus) { |
---|
1209 | for (int irow = 0; irow < cNRow; irow++) { |
---|
1210 | if (sel[irow]) { |
---|
1211 | // Convert to feed-plane coordinates. |
---|
1212 | Double dist, pa; |
---|
1213 | distPA(ra[irow]*D2R, dec[irow]*D2R, srcRA[irow]*D2R, |
---|
1214 | srcDec[irow]*D2R, dist, pa); |
---|
1215 | |
---|
1216 | Double spin = (par[irow] + rot[irow])*D2R - pa; |
---|
1217 | if (spin > 2.0*PI) spin -= 2.0*PI; |
---|
1218 | Double squint = PI/2.0 - dist; |
---|
1219 | |
---|
1220 | positions[isel++] = spin; |
---|
1221 | positions[isel++] = squint; |
---|
1222 | } |
---|
1223 | } |
---|
1224 | } |
---|
1225 | |
---|
1226 | delete [] srcRA; |
---|
1227 | delete [] srcDec; |
---|
1228 | delete [] par; |
---|
1229 | delete [] rot; |
---|
1230 | } |
---|
1231 | } |
---|
1232 | |
---|
1233 | delete [] ra; |
---|
1234 | delete [] dec; |
---|
1235 | } |
---|
1236 | |
---|
1237 | cleanup: |
---|
1238 | delete [] sel; |
---|
1239 | |
---|
1240 | if (cStatus) { |
---|
1241 | nSel = 0; |
---|
1242 | delete [] positions; |
---|
1243 | logMsg(); |
---|
1244 | cStatus = 0; |
---|
1245 | return 1; |
---|
1246 | } |
---|
1247 | |
---|
1248 | return 0; |
---|
1249 | } |
---|
1250 | |
---|
1251 | |
---|
1252 | //--------------------------------------------------------- SDFITSreader::read |
---|
1253 | |
---|
1254 | // Read the next data record. |
---|
1255 | |
---|
1256 | int SDFITSreader::read( |
---|
1257 | MBrecord &mbrec) |
---|
1258 | { |
---|
1259 | // Has the file been opened? |
---|
1260 | if (!cSDptr) { |
---|
1261 | return 1; |
---|
1262 | } |
---|
1263 | |
---|
1264 | // Find the next selected beam and IF. |
---|
1265 | short iBeam = 0, iIF = 0; |
---|
1266 | while (1) { |
---|
1267 | if (++cTimeIdx > cNAxisTime) { |
---|
1268 | if (++cRow > cNRow) break; |
---|
1269 | cTimeIdx = 1; |
---|
1270 | } |
---|
1271 | |
---|
1272 | if (cData[BEAM].colnum > 0) { |
---|
1273 | readData(BEAM, cRow, &iBeam); |
---|
1274 | |
---|
1275 | // Convert to 0-relative. |
---|
1276 | if (cBeam_1rel) iBeam--; |
---|
1277 | } |
---|
1278 | |
---|
1279 | |
---|
1280 | if (cBeams[iBeam]) { |
---|
1281 | if (cData[IF].colnum > 0) { |
---|
1282 | readData(IF, cRow, &iIF); |
---|
1283 | |
---|
1284 | // Convert to 0-relative. |
---|
1285 | if (cIF_1rel) iIF--; |
---|
1286 | } |
---|
1287 | |
---|
1288 | if (cIFs[iIF]) { |
---|
1289 | if (cALFA) { |
---|
1290 | // ALFA data, check for calibration data. |
---|
1291 | char chars[32]; |
---|
1292 | readData(OBSMODE, cRow, chars); |
---|
1293 | if (strcmp(chars, "DROP") == 0) { |
---|
1294 | // Completely flagged integration. |
---|
1295 | continue; |
---|
1296 | |
---|
1297 | } else if (strcmp(chars, "CAL") == 0) { |
---|
1298 | sReset = 1; |
---|
1299 | if (cALFA_CIMA > 1) { |
---|
1300 | for (short iPol = 0; iPol < cNPol[iIF]; iPol++) { |
---|
1301 | alfaCal(iBeam, iIF, iPol); |
---|
1302 | } |
---|
1303 | continue; |
---|
1304 | } else { |
---|
1305 | // iIF is really the polarization in older ALFA data. |
---|
1306 | alfaCal(iBeam, 0, iIF); |
---|
1307 | continue; |
---|
1308 | } |
---|
1309 | |
---|
1310 | } else { |
---|
1311 | // Reset for the next CAL record. |
---|
1312 | if (sReset) { |
---|
1313 | for (short iPol = 0; iPol < cNPol[iIF]; iPol++) { |
---|
1314 | sALFAcalNon[iBeam][iPol] = 0; |
---|
1315 | sALFAcalNoff[iBeam][iPol] = 0; |
---|
1316 | sALFAcalOn[iBeam][iPol] = 0.0f; |
---|
1317 | sALFAcalOff[iBeam][iPol] = 0.0f; |
---|
1318 | } |
---|
1319 | sReset = 0; |
---|
1320 | |
---|
1321 | sprintf(cMsg, "ALFA cal factors for beam %d: %.3e, %.3e", |
---|
1322 | iBeam+1, sALFAcal[iBeam][0], sALFAcal[iBeam][1]); |
---|
1323 | logMsg(cMsg); |
---|
1324 | } |
---|
1325 | } |
---|
1326 | } |
---|
1327 | |
---|
1328 | break; |
---|
1329 | } |
---|
1330 | } |
---|
1331 | } |
---|
1332 | |
---|
1333 | // EOF? |
---|
1334 | if (cRow > cNRow) { |
---|
1335 | return -1; |
---|
1336 | } |
---|
1337 | |
---|
1338 | |
---|
1339 | if (cALFA) { |
---|
1340 | int scanNo; |
---|
1341 | readData(SCAN, cRow, &scanNo); |
---|
1342 | if (scanNo != cALFAscan) { |
---|
1343 | cScanNo++; |
---|
1344 | cALFAscan = scanNo; |
---|
1345 | } |
---|
1346 | mbrec.scanNo = cScanNo; |
---|
1347 | |
---|
1348 | } else { |
---|
1349 | readData(SCAN, cRow, &mbrec.scanNo); |
---|
1350 | |
---|
1351 | // Ensure that scan number is 1-relative. |
---|
1352 | mbrec.scanNo -= (cFirstScanNo - 1); |
---|
1353 | } |
---|
1354 | |
---|
1355 | // Times. |
---|
1356 | char datobs[32]; |
---|
1357 | readTime(cRow, cTimeIdx, datobs, mbrec.utc); |
---|
1358 | strcpy(mbrec.datobs, datobs); |
---|
1359 | |
---|
1360 | if (cData[CYCLE].colnum > 0) { |
---|
1361 | readData(CYCLE, cRow, &mbrec.cycleNo); |
---|
1362 | mbrec.cycleNo += cTimeIdx - 1; |
---|
1363 | if (cALFA_BD) mbrec.cycleNo++; |
---|
1364 | } else { |
---|
1365 | // Cycle number not recorded, must do our own bookkeeping. |
---|
1366 | if (mbrec.utc != cLastUTC) { |
---|
1367 | mbrec.cycleNo = ++cCycleNo; |
---|
1368 | cLastUTC = mbrec.utc; |
---|
1369 | } |
---|
1370 | } |
---|
1371 | |
---|
1372 | readData(EXPOSURE, cRow, &mbrec.exposure); |
---|
1373 | |
---|
1374 | // Source identification. |
---|
1375 | readData(OBJECT, cRow, mbrec.srcName); |
---|
1376 | |
---|
1377 | readData(OBJ_RA, cRow, &mbrec.srcRA); |
---|
1378 | if (strcmp(cData[OBJ_RA].name, "OBJ-RA") == 0) { |
---|
1379 | mbrec.srcRA *= D2R; |
---|
1380 | } |
---|
1381 | |
---|
1382 | if (strcmp(cData[OBJ_DEC].name, "OBJ-DEC") == 0) { |
---|
1383 | readData(OBJ_DEC, cRow, &mbrec.srcDec); |
---|
1384 | mbrec.srcDec *= D2R; |
---|
1385 | } |
---|
1386 | |
---|
1387 | // Line rest frequency (Hz). |
---|
1388 | readData(RESTFRQ, cRow, &mbrec.restFreq); |
---|
1389 | if (mbrec.restFreq == 0.0 && cALFA_BD) { |
---|
1390 | mbrec.restFreq = 1420.40575e6; |
---|
1391 | } |
---|
1392 | |
---|
1393 | // Observation mode. |
---|
1394 | readData(OBSMODE, cRow, mbrec.obsType); |
---|
1395 | |
---|
1396 | // Beam-dependent parameters. |
---|
1397 | mbrec.beamNo = iBeam + 1; |
---|
1398 | |
---|
1399 | readData(RA, cRow, &mbrec.ra); |
---|
1400 | readData(DEC, cRow, &mbrec.dec); |
---|
1401 | mbrec.ra *= D2R; |
---|
1402 | mbrec.dec *= D2R; |
---|
1403 | |
---|
1404 | if (cALFA_BD) mbrec.ra *= 15.0; |
---|
1405 | |
---|
1406 | float scanrate[2]; |
---|
1407 | readData(SCANRATE, cRow, &scanrate); |
---|
1408 | if (strcmp(cData[SCANRATE].name, "SCANRATE") == 0) { |
---|
1409 | mbrec.raRate = scanrate[0] * D2R; |
---|
1410 | mbrec.decRate = scanrate[1] * D2R; |
---|
1411 | } |
---|
1412 | mbrec.paRate = 0.0f; |
---|
1413 | |
---|
1414 | // IF-dependent parameters. |
---|
1415 | int startChan = cStartChan[iIF]; |
---|
1416 | int endChan = cEndChan[iIF]; |
---|
1417 | int refChan = cRefChan[iIF]; |
---|
1418 | |
---|
1419 | // Allocate data storage. |
---|
1420 | int nChan = abs(endChan - startChan) + 1; |
---|
1421 | int nPol = cNPol[iIF]; |
---|
1422 | |
---|
1423 | if (cGetSpectra || cGetXPol) { |
---|
1424 | int nxpol = cGetXPol ? 2*nChan : 0; |
---|
1425 | mbrec.allocate(0, nChan*nPol, nxpol); |
---|
1426 | } |
---|
1427 | |
---|
1428 | mbrec.nIF = 1; |
---|
1429 | mbrec.IFno[0] = iIF + 1; |
---|
1430 | mbrec.nChan[0] = nChan; |
---|
1431 | mbrec.nPol[0] = nPol; |
---|
1432 | |
---|
1433 | readData(FqRefPix, cRow, mbrec.fqRefPix); |
---|
1434 | readData(FqRefVal, cRow, mbrec.fqRefVal); |
---|
1435 | readData(FqDelt, cRow, mbrec.fqDelt); |
---|
1436 | |
---|
1437 | if (cALFA_BD) { |
---|
1438 | unsigned char invert; |
---|
1439 | int anynul, colnum; |
---|
1440 | findCol("UPPERSB", &colnum); |
---|
1441 | fits_read_col(cSDptr, TBYTE, colnum, cRow, 1, 1, 0, &invert, &anynul, |
---|
1442 | &cStatus); |
---|
1443 | |
---|
1444 | if (invert) { |
---|
1445 | mbrec.fqDelt[0] = -mbrec.fqDelt[0]; |
---|
1446 | } |
---|
1447 | } |
---|
1448 | |
---|
1449 | if (cStatus) { |
---|
1450 | logMsg(); |
---|
1451 | return 1; |
---|
1452 | } |
---|
1453 | |
---|
1454 | // Adjust for channel selection. |
---|
1455 | if (mbrec.fqRefPix[0] != refChan) { |
---|
1456 | mbrec.fqRefVal[0] += (refChan - mbrec.fqRefPix[0]) * mbrec.fqDelt[0]; |
---|
1457 | mbrec.fqRefPix[0] = refChan; |
---|
1458 | } |
---|
1459 | |
---|
1460 | if (endChan < startChan) { |
---|
1461 | mbrec.fqDelt[0] = -mbrec.fqDelt[0]; |
---|
1462 | } |
---|
1463 | |
---|
1464 | // The data may only have a scalar Tsys value. |
---|
1465 | mbrec.tsys[0][0] = 0.0f; |
---|
1466 | mbrec.tsys[0][1] = 0.0f; |
---|
1467 | if (cData[TSYS].nelem >= nPol) { |
---|
1468 | readData(TSYS, cRow, mbrec.tsys[0]); |
---|
1469 | } |
---|
1470 | |
---|
1471 | for (int j = 0; j < 2; j++) { |
---|
1472 | mbrec.calfctr[0][j] = 0.0f; |
---|
1473 | } |
---|
1474 | if (cData[CALFCTR].colnum > 0) { |
---|
1475 | readData(CALFCTR, cRow, mbrec.calfctr); |
---|
1476 | } |
---|
1477 | |
---|
1478 | if (cHaveBase) { |
---|
1479 | mbrec.haveBase = 1; |
---|
1480 | readData(BASELIN, cRow, mbrec.baseLin); |
---|
1481 | readData(BASESUB, cRow, mbrec.baseSub); |
---|
1482 | } else { |
---|
1483 | mbrec.haveBase = 0; |
---|
1484 | } |
---|
1485 | |
---|
1486 | if (cStatus) { |
---|
1487 | logMsg(); |
---|
1488 | return 1; |
---|
1489 | } |
---|
1490 | |
---|
1491 | // Read data, sectioning and transposing it in the process. |
---|
1492 | long *blc = new long[cNAxes+1]; |
---|
1493 | long *trc = new long[cNAxes+1]; |
---|
1494 | long *inc = new long[cNAxes+1]; |
---|
1495 | for (int iaxis = 0; iaxis <= cNAxes; iaxis++) { |
---|
1496 | blc[iaxis] = 1; |
---|
1497 | trc[iaxis] = 1; |
---|
1498 | inc[iaxis] = 1; |
---|
1499 | } |
---|
1500 | |
---|
1501 | blc[cFreqAxis] = std::min(startChan, endChan); |
---|
1502 | trc[cFreqAxis] = std::max(startChan, endChan); |
---|
1503 | if (cTimeAxis >= 0) { |
---|
1504 | blc[cTimeAxis] = cTimeIdx; |
---|
1505 | trc[cTimeAxis] = cTimeIdx; |
---|
1506 | } |
---|
1507 | blc[cNAxes] = cRow; |
---|
1508 | trc[cNAxes] = cRow; |
---|
1509 | |
---|
1510 | mbrec.haveSpectra = cGetSpectra; |
---|
1511 | if (cGetSpectra) { |
---|
1512 | int anynul; |
---|
1513 | |
---|
1514 | for (int iPol = 0; iPol < nPol; iPol++) { |
---|
1515 | blc[cStokesAxis] = iPol+1; |
---|
1516 | trc[cStokesAxis] = iPol+1; |
---|
1517 | |
---|
1518 | if (cALFA && cALFA_CIMA < 2) { |
---|
1519 | // ALFA data: polarizations are stored in successive rows. |
---|
1520 | blc[cStokesAxis] = 1; |
---|
1521 | trc[cStokesAxis] = 1; |
---|
1522 | |
---|
1523 | if (iPol) { |
---|
1524 | if (++cRow > cNRow) { |
---|
1525 | return -1; |
---|
1526 | } |
---|
1527 | |
---|
1528 | blc[cNAxes] = cRow; |
---|
1529 | trc[cNAxes] = cRow; |
---|
1530 | } |
---|
1531 | |
---|
1532 | } else if (cData[DATA].nelem < 0) { |
---|
1533 | // Variable dimension array; get axis lengths. |
---|
1534 | int naxes = 5, status; |
---|
1535 | |
---|
1536 | if ((status = readDim(DATA, cRow, &naxes, cNAxis))) { |
---|
1537 | logMsg(); |
---|
1538 | |
---|
1539 | } else if ((status = (naxes != cNAxes))) { |
---|
1540 | logMsg("ERROR: DATA array dimensions changed."); |
---|
1541 | } |
---|
1542 | |
---|
1543 | if (status) { |
---|
1544 | delete [] blc; |
---|
1545 | delete [] trc; |
---|
1546 | delete [] inc; |
---|
1547 | return 1; |
---|
1548 | } |
---|
1549 | } |
---|
1550 | |
---|
1551 | if (fits_read_subset_flt(cSDptr, cData[DATA].colnum, cNAxes, cNAxis, |
---|
1552 | blc, trc, inc, 0, mbrec.spectra[0] + iPol*nChan, &anynul, |
---|
1553 | &cStatus)) { |
---|
1554 | logMsg(); |
---|
1555 | delete [] blc; |
---|
1556 | delete [] trc; |
---|
1557 | delete [] inc; |
---|
1558 | return 1; |
---|
1559 | } |
---|
1560 | |
---|
1561 | if (endChan < startChan) { |
---|
1562 | // Reverse the spectrum. |
---|
1563 | float *iptr = mbrec.spectra[0] + iPol*nChan; |
---|
1564 | float *jptr = iptr + nChan - 1; |
---|
1565 | float *mid = iptr + nChan/2; |
---|
1566 | while (iptr < mid) { |
---|
1567 | float tmp = *iptr; |
---|
1568 | *(iptr++) = *jptr; |
---|
1569 | *(jptr--) = tmp; |
---|
1570 | } |
---|
1571 | } |
---|
1572 | |
---|
1573 | if (cALFA) { |
---|
1574 | // ALFA data, rescale the spectrum. |
---|
1575 | float el, zd; |
---|
1576 | readData(ELEVATIO, cRow, &el); |
---|
1577 | zd = 90.0f - el; |
---|
1578 | |
---|
1579 | float factor = sALFAcal[iBeam][iPol] / alfaGain(zd); |
---|
1580 | |
---|
1581 | if (cALFA_CIMA > 1) { |
---|
1582 | // Rescale according to the number of unblanked accumulations. |
---|
1583 | int colnum, naccum; |
---|
1584 | findCol("STAT", &colnum); |
---|
1585 | fits_read_col(cSDptr, TINT, colnum, cRow, 10*(cTimeIdx-1)+2, 1, 0, |
---|
1586 | &naccum, &anynul, &cStatus); |
---|
1587 | factor *= cALFAacc / naccum; |
---|
1588 | } |
---|
1589 | |
---|
1590 | float *chan = mbrec.spectra[0] + iPol*nChan; |
---|
1591 | float *chanN = chan + nChan; |
---|
1592 | while (chan < chanN) { |
---|
1593 | // Approximate conversion to Jy. |
---|
1594 | *(chan++) *= factor; |
---|
1595 | } |
---|
1596 | } |
---|
1597 | |
---|
1598 | if (mbrec.tsys[0][iPol] == 0.0) { |
---|
1599 | // Compute Tsys as the average across the spectrum. |
---|
1600 | float *chan = mbrec.spectra[0] + iPol*nChan; |
---|
1601 | float *chanN = chan + nChan; |
---|
1602 | float *tsys = mbrec.tsys[0] + iPol; |
---|
1603 | while (chan < chanN) { |
---|
1604 | *tsys += *(chan++); |
---|
1605 | } |
---|
1606 | |
---|
1607 | *tsys /= nChan; |
---|
1608 | } |
---|
1609 | |
---|
1610 | // Read data flags. |
---|
1611 | if (cData[FLAGGED].colnum > 0) { |
---|
1612 | if (fits_read_subset_byt(cSDptr, cData[FLAGGED].colnum, cNAxes, |
---|
1613 | cNAxis, blc, trc, inc, 0, mbrec.flagged[0] + iPol*nChan, &anynul, |
---|
1614 | &cStatus)) { |
---|
1615 | logMsg(); |
---|
1616 | delete [] blc; |
---|
1617 | delete [] trc; |
---|
1618 | delete [] inc; |
---|
1619 | return 1; |
---|
1620 | } |
---|
1621 | |
---|
1622 | if (endChan < startChan) { |
---|
1623 | // Reverse the flag vector. |
---|
1624 | unsigned char *iptr = mbrec.flagged[0] + iPol*nChan; |
---|
1625 | unsigned char *jptr = iptr + nChan - 1; |
---|
1626 | for (int ichan = 0; ichan < nChan/2; ichan++) { |
---|
1627 | unsigned char tmp = *iptr; |
---|
1628 | *(iptr++) = *jptr; |
---|
1629 | *(jptr--) = tmp; |
---|
1630 | } |
---|
1631 | } |
---|
1632 | |
---|
1633 | } else { |
---|
1634 | // All channels are unflagged by default. |
---|
1635 | unsigned char *iptr = mbrec.flagged[0] + iPol*nChan; |
---|
1636 | for (int ichan = 0; ichan < nChan; ichan++) { |
---|
1637 | *(iptr++) = 0; |
---|
1638 | } |
---|
1639 | } |
---|
1640 | } |
---|
1641 | } |
---|
1642 | |
---|
1643 | |
---|
1644 | // Read cross-polarization data. |
---|
1645 | if (cGetXPol) { |
---|
1646 | int anynul; |
---|
1647 | for (int j = 0; j < 2; j++) { |
---|
1648 | mbrec.xcalfctr[0][j] = 0.0f; |
---|
1649 | } |
---|
1650 | if (cData[XCALFCTR].colnum > 0) { |
---|
1651 | readData(XCALFCTR, cRow, mbrec.xcalfctr); |
---|
1652 | } |
---|
1653 | |
---|
1654 | blc[0] = 1; |
---|
1655 | trc[0] = 2; |
---|
1656 | blc[1] = std::min(startChan, endChan); |
---|
1657 | trc[1] = std::max(startChan, endChan); |
---|
1658 | blc[2] = cRow; |
---|
1659 | trc[2] = cRow; |
---|
1660 | |
---|
1661 | int nAxis = 2; |
---|
1662 | long nAxes[] = {2, nChan}; |
---|
1663 | |
---|
1664 | if (fits_read_subset_flt(cSDptr, cData[XPOLDATA].colnum, nAxis, nAxes, |
---|
1665 | blc, trc, inc, 0, mbrec.xpol[0], &anynul, &cStatus)) { |
---|
1666 | logMsg(); |
---|
1667 | delete [] blc; |
---|
1668 | delete [] trc; |
---|
1669 | delete [] inc; |
---|
1670 | return 1; |
---|
1671 | } |
---|
1672 | |
---|
1673 | if (endChan < startChan) { |
---|
1674 | // Invert the cross-polarization spectrum. |
---|
1675 | float *iptr = mbrec.xpol[0]; |
---|
1676 | float *jptr = iptr + nChan - 2; |
---|
1677 | for (int ichan = 0; ichan < nChan/2; ichan++) { |
---|
1678 | float tmp = *iptr; |
---|
1679 | *iptr = *jptr; |
---|
1680 | *jptr = tmp; |
---|
1681 | |
---|
1682 | tmp = *(iptr+1); |
---|
1683 | *(iptr+1) = *(jptr+1); |
---|
1684 | *(jptr+1) = tmp; |
---|
1685 | |
---|
1686 | iptr += 2; |
---|
1687 | jptr -= 2; |
---|
1688 | } |
---|
1689 | } |
---|
1690 | } |
---|
1691 | |
---|
1692 | delete [] blc; |
---|
1693 | delete [] trc; |
---|
1694 | delete [] inc; |
---|
1695 | |
---|
1696 | if (cStatus) { |
---|
1697 | logMsg(); |
---|
1698 | return 1; |
---|
1699 | } |
---|
1700 | |
---|
1701 | mbrec.extraSysCal = cExtraSysCal; |
---|
1702 | readData(REFBEAM, cRow, &mbrec.refBeam); |
---|
1703 | readData(TCAL, cRow, &mbrec.tcal[0]); |
---|
1704 | readData(TCALTIME, cRow, mbrec.tcalTime); |
---|
1705 | |
---|
1706 | readData(AZIMUTH, cRow, &mbrec.azimuth); |
---|
1707 | readData(ELEVATIO, cRow, &mbrec.elevation); |
---|
1708 | readData(PARANGLE, cRow, &mbrec.parAngle); |
---|
1709 | |
---|
1710 | readData(FOCUSAXI, cRow, &mbrec.focusAxi); |
---|
1711 | readData(FOCUSTAN, cRow, &mbrec.focusTan); |
---|
1712 | readData(FOCUSROT, cRow, &mbrec.focusRot); |
---|
1713 | |
---|
1714 | readData(TAMBIENT, cRow, &mbrec.temp); |
---|
1715 | readData(PRESSURE, cRow, &mbrec.pressure); |
---|
1716 | readData(HUMIDITY, cRow, &mbrec.humidity); |
---|
1717 | readData(WINDSPEE, cRow, &mbrec.windSpeed); |
---|
1718 | readData(WINDDIRE, cRow, &mbrec.windAz); |
---|
1719 | |
---|
1720 | if (cALFA_BD) { |
---|
1721 | // ALFA BDFITS stores zenith angle rather than elevation. |
---|
1722 | mbrec.elevation = 90.0 - mbrec.elevation; |
---|
1723 | } |
---|
1724 | |
---|
1725 | mbrec.azimuth *= D2R; |
---|
1726 | mbrec.elevation *= D2R; |
---|
1727 | mbrec.parAngle *= D2R; |
---|
1728 | mbrec.focusRot *= D2R; |
---|
1729 | mbrec.windAz *= D2R; |
---|
1730 | |
---|
1731 | if (cStatus) { |
---|
1732 | logMsg(); |
---|
1733 | return 1; |
---|
1734 | } |
---|
1735 | |
---|
1736 | return 0; |
---|
1737 | } |
---|
1738 | |
---|
1739 | //-------------------------------------------------------- SDFITSreader::close |
---|
1740 | |
---|
1741 | // Close the SDFITS file. |
---|
1742 | |
---|
1743 | void SDFITSreader::close() |
---|
1744 | { |
---|
1745 | if (cSDptr) { |
---|
1746 | int status = 0; |
---|
1747 | fits_close_file(cSDptr, &status); |
---|
1748 | cSDptr = 0x0; |
---|
1749 | |
---|
1750 | if (cBeams) delete [] cBeams; |
---|
1751 | if (cIFs) delete [] cIFs; |
---|
1752 | if (cStartChan) delete [] cStartChan; |
---|
1753 | if (cEndChan) delete [] cEndChan; |
---|
1754 | if (cRefChan) delete [] cRefChan; |
---|
1755 | } |
---|
1756 | } |
---|
1757 | |
---|
1758 | //------------------------------------------------------- SDFITSreader::logMsg |
---|
1759 | |
---|
1760 | // Log a message. If the current CFITSIO status value is non-zero, also log |
---|
1761 | // the corresponding error message and the CFITSIO message stack. |
---|
1762 | |
---|
1763 | void SDFITSreader::logMsg(const char *msg) |
---|
1764 | { |
---|
1765 | FITSreader::logMsg(msg); |
---|
1766 | |
---|
1767 | if (cStatus > 0) { |
---|
1768 | fits_get_errstatus(cStatus, cMsg); |
---|
1769 | FITSreader::logMsg(cMsg); |
---|
1770 | |
---|
1771 | while (fits_read_errmsg(cMsg)) { |
---|
1772 | FITSreader::logMsg(cMsg); |
---|
1773 | } |
---|
1774 | } |
---|
1775 | } |
---|
1776 | |
---|
1777 | //----------------------------------------------------- SDFITSreader::findData |
---|
1778 | |
---|
1779 | // Locate a data item in the SDFITS file. |
---|
1780 | |
---|
1781 | void SDFITSreader::findData( |
---|
1782 | int iData, |
---|
1783 | char *name, |
---|
1784 | int type) |
---|
1785 | { |
---|
1786 | cData[iData].name = name; |
---|
1787 | cData[iData].type = type; |
---|
1788 | |
---|
1789 | int colnum; |
---|
1790 | findCol(name, &colnum); |
---|
1791 | cData[iData].colnum = colnum; |
---|
1792 | |
---|
1793 | // Determine the number of data elements. |
---|
1794 | if (colnum > 0) { |
---|
1795 | int coltype; |
---|
1796 | long nelem, width; |
---|
1797 | fits_get_coltype(cSDptr, colnum, &coltype, &nelem, &width, &cStatus); |
---|
1798 | fits_get_bcolparms(cSDptr, colnum, 0x0, cData[iData].units, 0x0, 0x0, 0x0, |
---|
1799 | 0x0, 0x0, 0x0, &cStatus); |
---|
1800 | |
---|
1801 | // Look for a TDIMnnn keyword or column. |
---|
1802 | char tdim[8]; |
---|
1803 | sprintf(tdim, "TDIM%d", colnum); |
---|
1804 | findCol(tdim, &cData[iData].tdimcol); |
---|
1805 | |
---|
1806 | if (coltype < 0) { |
---|
1807 | // CFITSIO returns coltype < 0 for variable length arrays. |
---|
1808 | cData[iData].coltype = -coltype; |
---|
1809 | cData[iData].nelem = -nelem; |
---|
1810 | |
---|
1811 | } else { |
---|
1812 | cData[iData].coltype = coltype; |
---|
1813 | |
---|
1814 | // Is there a TDIMnnn column? |
---|
1815 | if (cData[iData].tdimcol > 0) { |
---|
1816 | // Yes, dimensions of the fixed-length array could still vary. |
---|
1817 | cData[iData].nelem = -nelem; |
---|
1818 | } else { |
---|
1819 | cData[iData].nelem = nelem; |
---|
1820 | } |
---|
1821 | } |
---|
1822 | |
---|
1823 | } else if (colnum == 0) { |
---|
1824 | // Keyword. |
---|
1825 | cData[iData].coltype = 0; |
---|
1826 | cData[iData].nelem = 1; |
---|
1827 | cData[iData].tdimcol = -1; |
---|
1828 | } |
---|
1829 | } |
---|
1830 | |
---|
1831 | //------------------------------------------------------ SDFITSreader::findCol |
---|
1832 | |
---|
1833 | // Locate a parameter in the SDFITS file. |
---|
1834 | |
---|
1835 | void SDFITSreader::findCol( |
---|
1836 | char *name, |
---|
1837 | int *colnum) |
---|
1838 | { |
---|
1839 | *colnum = 0; |
---|
1840 | int status = 0; |
---|
1841 | fits_get_colnum(cSDptr, CASESEN, name, colnum, &status); |
---|
1842 | |
---|
1843 | if (status) { |
---|
1844 | // Not a real column - maybe it's virtual. |
---|
1845 | char card[81]; |
---|
1846 | |
---|
1847 | status = 0; |
---|
1848 | fits_read_card(cSDptr, name, card, &status); |
---|
1849 | if (status) { |
---|
1850 | // Not virtual either. |
---|
1851 | *colnum = -1; |
---|
1852 | } |
---|
1853 | |
---|
1854 | // Clear error messages. |
---|
1855 | fits_clear_errmsg(); |
---|
1856 | } |
---|
1857 | } |
---|
1858 | |
---|
1859 | //------------------------------------------------------ SDFITSreader::readDim |
---|
1860 | |
---|
1861 | // Determine the dimensions of an array in the SDFITS file. |
---|
1862 | |
---|
1863 | int SDFITSreader::readDim( |
---|
1864 | int iData, |
---|
1865 | long iRow, |
---|
1866 | int *naxes, |
---|
1867 | long naxis[]) |
---|
1868 | { |
---|
1869 | int colnum = cData[iData].colnum; |
---|
1870 | if (colnum <= 0) { |
---|
1871 | return 1; |
---|
1872 | } |
---|
1873 | |
---|
1874 | int maxdim = *naxes; |
---|
1875 | if (cData[iData].tdimcol < 0) { |
---|
1876 | // No TDIMnnn column for this array. |
---|
1877 | if (cData[iData].nelem < 0) { |
---|
1878 | // Variable length array; read the array descriptor. |
---|
1879 | *naxes = 1; |
---|
1880 | long dummy; |
---|
1881 | if (fits_read_descript(cSDptr, colnum, iRow, naxis, &dummy, &cStatus)) { |
---|
1882 | return 1; |
---|
1883 | } |
---|
1884 | |
---|
1885 | } else { |
---|
1886 | // Read the repeat count from TFORMnnn. |
---|
1887 | if (fits_read_tdim(cSDptr, colnum, maxdim, naxes, naxis, &cStatus)) { |
---|
1888 | return 1; |
---|
1889 | } |
---|
1890 | } |
---|
1891 | |
---|
1892 | } else { |
---|
1893 | // Read the TDIMnnn value from the header or table. |
---|
1894 | char tdim[8], tdimval[64]; |
---|
1895 | sprintf(tdim, "TDIM%d", colnum); |
---|
1896 | readData(tdim, TSTRING, iRow, tdimval); |
---|
1897 | |
---|
1898 | // fits_decode_tdim() checks that the TDIMnnn value is within the length |
---|
1899 | // of the array in the specified column number but unfortunately doesn't |
---|
1900 | // recognize variable-length arrays. Hence we must decode it here. |
---|
1901 | char *tp = tdimval; |
---|
1902 | if (*tp != '(') return 1; |
---|
1903 | |
---|
1904 | tp++; |
---|
1905 | *naxes = 0; |
---|
1906 | for (size_t j = 1; j < strlen(tdimval); j++) { |
---|
1907 | if (tdimval[j] == ',' || tdimval[j] == ')') { |
---|
1908 | sscanf(tp, "%ld", naxis + (*naxes)++); |
---|
1909 | if (tdimval[j] == ')') break; |
---|
1910 | tp = tdimval + j + 1; |
---|
1911 | } |
---|
1912 | } |
---|
1913 | } |
---|
1914 | |
---|
1915 | return 0; |
---|
1916 | } |
---|
1917 | |
---|
1918 | //----------------------------------------------------- SDFITSreader::readParm |
---|
1919 | |
---|
1920 | // Read a parameter value from the SDFITS file. |
---|
1921 | |
---|
1922 | int SDFITSreader::readParm( |
---|
1923 | char *name, |
---|
1924 | int type, |
---|
1925 | void *value) |
---|
1926 | { |
---|
1927 | return readData(name, type, 1, value); |
---|
1928 | } |
---|
1929 | |
---|
1930 | //----------------------------------------------------- SDFITSreader::readData |
---|
1931 | |
---|
1932 | // Read a data value from the SDFITS file. |
---|
1933 | |
---|
1934 | int SDFITSreader::readData( |
---|
1935 | char *name, |
---|
1936 | int type, |
---|
1937 | long iRow, |
---|
1938 | void *value) |
---|
1939 | { |
---|
1940 | int colnum; |
---|
1941 | findCol(name, &colnum); |
---|
1942 | |
---|
1943 | if (colnum > 0 && iRow > 0) { |
---|
1944 | // Read the first value from the specified row of the table. |
---|
1945 | int coltype; |
---|
1946 | long nelem, width; |
---|
1947 | fits_get_coltype(cSDptr, colnum, &coltype, &nelem, &width, &cStatus); |
---|
1948 | |
---|
1949 | int anynul; |
---|
1950 | if (type == TSTRING) { |
---|
1951 | if (nelem) { |
---|
1952 | fits_read_col(cSDptr, type, colnum, iRow, 1, 1, 0, &value, &anynul, |
---|
1953 | &cStatus); |
---|
1954 | } else { |
---|
1955 | strcpy((char *)value, ""); |
---|
1956 | } |
---|
1957 | |
---|
1958 | } else { |
---|
1959 | if (nelem) { |
---|
1960 | fits_read_col(cSDptr, type, colnum, iRow, 1, 1, 0, value, &anynul, |
---|
1961 | &cStatus); |
---|
1962 | } else { |
---|
1963 | if (type == TSHORT) { |
---|
1964 | *((short *)value) = 0; |
---|
1965 | } else if (type == TINT) { |
---|
1966 | *((int *)value) = 0; |
---|
1967 | } else if (type == TFLOAT) { |
---|
1968 | *((float *)value) = 0.0f; |
---|
1969 | } else if (type == TDOUBLE) { |
---|
1970 | *((double *)value) = 0.0; |
---|
1971 | } |
---|
1972 | } |
---|
1973 | } |
---|
1974 | |
---|
1975 | } else if (colnum == 0) { |
---|
1976 | // Read keyword value. |
---|
1977 | fits_read_key(cSDptr, type, name, value, 0, &cStatus); |
---|
1978 | |
---|
1979 | } else { |
---|
1980 | // Not present. |
---|
1981 | if (type == TSTRING) { |
---|
1982 | strcpy((char *)value, ""); |
---|
1983 | } else if (type == TSHORT) { |
---|
1984 | *((short *)value) = 0; |
---|
1985 | } else if (type == TINT) { |
---|
1986 | *((int *)value) = 0; |
---|
1987 | } else if (type == TFLOAT) { |
---|
1988 | *((float *)value) = 0.0f; |
---|
1989 | } else if (type == TDOUBLE) { |
---|
1990 | *((double *)value) = 0.0; |
---|
1991 | } |
---|
1992 | } |
---|
1993 | |
---|
1994 | return colnum < 0; |
---|
1995 | } |
---|
1996 | |
---|
1997 | //----------------------------------------------------- SDFITSreader::readData |
---|
1998 | |
---|
1999 | // Read data from the SDFITS file. |
---|
2000 | |
---|
2001 | int SDFITSreader::readData( |
---|
2002 | int iData, |
---|
2003 | long iRow, |
---|
2004 | void *value) |
---|
2005 | { |
---|
2006 | int type = cData[iData].type; |
---|
2007 | int colnum = cData[iData].colnum; |
---|
2008 | |
---|
2009 | if (colnum > 0 && iRow > 0) { |
---|
2010 | // Read the required number of values from the specified row of the table. |
---|
2011 | long nelem = cData[iData].nelem; |
---|
2012 | int anynul; |
---|
2013 | if (type == TSTRING) { |
---|
2014 | if (nelem) { |
---|
2015 | fits_read_col(cSDptr, type, colnum, iRow, 1, 1, 0, &value, &anynul, |
---|
2016 | &cStatus); |
---|
2017 | } else { |
---|
2018 | strcpy((char *)value, ""); |
---|
2019 | } |
---|
2020 | |
---|
2021 | } else { |
---|
2022 | if (nelem) { |
---|
2023 | fits_read_col(cSDptr, type, colnum, iRow, 1, abs(nelem), 0, value, |
---|
2024 | &anynul, &cStatus); |
---|
2025 | } else { |
---|
2026 | if (type == TSHORT) { |
---|
2027 | *((short *)value) = 0; |
---|
2028 | } else if (type == TINT) { |
---|
2029 | *((int *)value) = 0; |
---|
2030 | } else if (type == TFLOAT) { |
---|
2031 | *((float *)value) = 0.0f; |
---|
2032 | } else if (type == TDOUBLE) { |
---|
2033 | *((double *)value) = 0.0; |
---|
2034 | } |
---|
2035 | } |
---|
2036 | } |
---|
2037 | |
---|
2038 | } else if (colnum == 0) { |
---|
2039 | // Read keyword value. |
---|
2040 | char *name = cData[iData].name; |
---|
2041 | fits_read_key(cSDptr, type, name, value, 0, &cStatus); |
---|
2042 | |
---|
2043 | } else { |
---|
2044 | // Not present. |
---|
2045 | if (type == TSTRING) { |
---|
2046 | strcpy((char *)value, ""); |
---|
2047 | } else if (type == TSHORT) { |
---|
2048 | *((short *)value) = 0; |
---|
2049 | } else if (type == TINT) { |
---|
2050 | *((int *)value) = 0; |
---|
2051 | } else if (type == TFLOAT) { |
---|
2052 | *((float *)value) = 0.0f; |
---|
2053 | } else if (type == TDOUBLE) { |
---|
2054 | *((double *)value) = 0.0; |
---|
2055 | } |
---|
2056 | } |
---|
2057 | |
---|
2058 | return colnum < 0; |
---|
2059 | } |
---|
2060 | |
---|
2061 | //------------------------------------------------------ SDFITSreader::readCol |
---|
2062 | |
---|
2063 | // Read a scalar column from the SDFITS file. |
---|
2064 | |
---|
2065 | int SDFITSreader::readCol( |
---|
2066 | int iData, |
---|
2067 | void *value) |
---|
2068 | { |
---|
2069 | int type = cData[iData].type; |
---|
2070 | |
---|
2071 | if (cData[iData].colnum > 0) { |
---|
2072 | // Table column. |
---|
2073 | int anynul; |
---|
2074 | fits_read_col(cSDptr, type, cData[iData].colnum, 1, 1, cNRow, 0, |
---|
2075 | value, &anynul, &cStatus); |
---|
2076 | |
---|
2077 | } else { |
---|
2078 | // Header keyword. |
---|
2079 | readData(iData, 0, value); |
---|
2080 | for (int irow = 1; irow < cNRow; irow++) { |
---|
2081 | if (type == TSHORT) { |
---|
2082 | ((short *)value)[irow] = *((short *)value); |
---|
2083 | } else if (type == TINT) { |
---|
2084 | ((int *)value)[irow] = *((int *)value); |
---|
2085 | } else if (type == TFLOAT) { |
---|
2086 | ((float *)value)[irow] = *((float *)value); |
---|
2087 | } else if (type == TDOUBLE) { |
---|
2088 | ((double *)value)[irow] = *((double *)value); |
---|
2089 | } |
---|
2090 | } |
---|
2091 | } |
---|
2092 | |
---|
2093 | return cData[iData].colnum < 0; |
---|
2094 | } |
---|
2095 | |
---|
2096 | //----------------------------------------------------- SDFITSreader::readTime |
---|
2097 | |
---|
2098 | // Read the time from the SDFITS file. |
---|
2099 | |
---|
2100 | int SDFITSreader::readTime( |
---|
2101 | long iRow, |
---|
2102 | int iPix, |
---|
2103 | char *datobs, |
---|
2104 | double &utc) |
---|
2105 | { |
---|
2106 | readData(DATE_OBS, iRow, datobs); |
---|
2107 | if (cData[TIME].colnum >= 0) { |
---|
2108 | readData(TIME, iRow, &utc); |
---|
2109 | } else if (cNAxisTime > 1) { |
---|
2110 | double timeDelt, timeRefPix, timeRefVal; |
---|
2111 | readData(TimeRefVal, iRow, &timeRefVal); |
---|
2112 | readData(TimeDelt, iRow, &timeDelt); |
---|
2113 | readData(TimeRefPix, iRow, &timeRefPix); |
---|
2114 | utc = timeRefVal + (iPix - timeRefPix) * timeDelt; |
---|
2115 | } |
---|
2116 | |
---|
2117 | if (cALFA_BD) utc *= 3600.0; |
---|
2118 | |
---|
2119 | // Check DATE-OBS format. |
---|
2120 | if (datobs[2] == '/') { |
---|
2121 | // Translate an old-format DATE-OBS. |
---|
2122 | datobs[9] = datobs[1]; |
---|
2123 | datobs[8] = datobs[0]; |
---|
2124 | datobs[2] = datobs[6]; |
---|
2125 | datobs[5] = datobs[3]; |
---|
2126 | datobs[3] = datobs[7]; |
---|
2127 | datobs[6] = datobs[4]; |
---|
2128 | datobs[7] = '-'; |
---|
2129 | datobs[4] = '-'; |
---|
2130 | datobs[1] = '9'; |
---|
2131 | datobs[0] = '1'; |
---|
2132 | |
---|
2133 | } else if (datobs[10] == 'T' && cData[TIME].colnum < 0) { |
---|
2134 | // Dig UTC out of a new-format DATE-OBS. |
---|
2135 | int hh, mm; |
---|
2136 | float ss; |
---|
2137 | sscanf(datobs+11, "%d:%d:%f", &hh, &mm, &ss); |
---|
2138 | utc = (hh*60 + mm)*60 + ss; |
---|
2139 | } |
---|
2140 | |
---|
2141 | datobs[10] = '\0'; |
---|
2142 | |
---|
2143 | return 0; |
---|
2144 | } |
---|
2145 | |
---|
2146 | //------------------------------------------------------ SDFITSreader::alfaCal |
---|
2147 | |
---|
2148 | // Process ALFA calibration data. |
---|
2149 | |
---|
2150 | int SDFITSreader::alfaCal( |
---|
2151 | short iBeam, |
---|
2152 | short iIF, |
---|
2153 | short iPol) |
---|
2154 | { |
---|
2155 | int calOn; |
---|
2156 | char chars[32]; |
---|
2157 | if (cALFA_BD) { |
---|
2158 | readData("OBS_NAME", TSTRING, cRow, chars); |
---|
2159 | } else { |
---|
2160 | readData("SCANTYPE", TSTRING, cRow, chars); |
---|
2161 | } |
---|
2162 | |
---|
2163 | if (strcmp(chars, "ON") == 0) { |
---|
2164 | calOn = 1; |
---|
2165 | } else if (strcmp(chars, "OFF") == 0) { |
---|
2166 | calOn = 0; |
---|
2167 | } else { |
---|
2168 | return 1; |
---|
2169 | } |
---|
2170 | |
---|
2171 | // Read cal data. |
---|
2172 | long *blc = new long[cNAxes+1]; |
---|
2173 | long *trc = new long[cNAxes+1]; |
---|
2174 | long *inc = new long[cNAxes+1]; |
---|
2175 | for (int iaxis = 0; iaxis <= cNAxes; iaxis++) { |
---|
2176 | blc[iaxis] = 1; |
---|
2177 | trc[iaxis] = 1; |
---|
2178 | inc[iaxis] = 1; |
---|
2179 | } |
---|
2180 | |
---|
2181 | // User channel selection. |
---|
2182 | int startChan = cStartChan[iIF]; |
---|
2183 | int endChan = cEndChan[iIF]; |
---|
2184 | |
---|
2185 | blc[cFreqAxis] = std::min(startChan, endChan); |
---|
2186 | trc[cFreqAxis] = std::max(startChan, endChan); |
---|
2187 | if (cALFA_CIMA > 1) { |
---|
2188 | // CIMAFITS 2.x has a legitimate STOKES axis... |
---|
2189 | blc[cStokesAxis] = iPol+1; |
---|
2190 | trc[cStokesAxis] = iPol+1; |
---|
2191 | } else { |
---|
2192 | // ...older ALFA data does not. |
---|
2193 | blc[cStokesAxis] = 1; |
---|
2194 | trc[cStokesAxis] = 1; |
---|
2195 | } |
---|
2196 | if (cTimeAxis >= 0) { |
---|
2197 | blc[cTimeAxis] = cTimeIdx; |
---|
2198 | trc[cTimeAxis] = cTimeIdx; |
---|
2199 | } |
---|
2200 | blc[cNAxes] = cRow; |
---|
2201 | trc[cNAxes] = cRow; |
---|
2202 | |
---|
2203 | float spectrum[endChan]; |
---|
2204 | int anynul; |
---|
2205 | if (fits_read_subset_flt(cSDptr, cData[DATA].colnum, cNAxes, cNAxis, |
---|
2206 | blc, trc, inc, 0, spectrum, &anynul, &cStatus)) { |
---|
2207 | logMsg(); |
---|
2208 | delete [] blc; |
---|
2209 | delete [] trc; |
---|
2210 | delete [] inc; |
---|
2211 | return 1; |
---|
2212 | } |
---|
2213 | |
---|
2214 | // Factor to rescale according to the number of unblanked accumulations. |
---|
2215 | float factor = 1.0f; |
---|
2216 | if (cALFA_CIMA > 1) { |
---|
2217 | int colnum, naccum; |
---|
2218 | findCol("STAT", &colnum); |
---|
2219 | fits_read_col(cSDptr, TINT, colnum, cRow, 2, 1, 0, &naccum, &anynul, |
---|
2220 | &cStatus); |
---|
2221 | factor = cALFAacc / naccum; |
---|
2222 | } |
---|
2223 | |
---|
2224 | // Average the spectrum. |
---|
2225 | float mean = 1e9f; |
---|
2226 | for (int k = 0; k < 2; k++) { |
---|
2227 | float discrim = 2.0f * mean; |
---|
2228 | |
---|
2229 | int nChan = 0; |
---|
2230 | float sum = 0.0f; |
---|
2231 | |
---|
2232 | float *chanN = spectrum + abs(endChan - startChan) + 1; |
---|
2233 | for (float *chan = spectrum; chan < chanN; chan++) { |
---|
2234 | // Simple discriminant that eliminates strong radar interference. |
---|
2235 | if (*chan < discrim) { |
---|
2236 | nChan++; |
---|
2237 | sum += *chan * factor; |
---|
2238 | } |
---|
2239 | } |
---|
2240 | |
---|
2241 | mean = sum / nChan; |
---|
2242 | } |
---|
2243 | |
---|
2244 | if (calOn) { |
---|
2245 | sALFAcalOn[iBeam][iPol] *= sALFAcalNon[iBeam][iPol]; |
---|
2246 | sALFAcalOn[iBeam][iPol] += mean; |
---|
2247 | sALFAcalOn[iBeam][iPol] /= ++sALFAcalNon[iBeam][iPol]; |
---|
2248 | } else { |
---|
2249 | sALFAcalOff[iBeam][iPol] *= sALFAcalNoff[iBeam][iPol]; |
---|
2250 | sALFAcalOff[iBeam][iPol] += mean; |
---|
2251 | sALFAcalOff[iBeam][iPol] /= ++sALFAcalNoff[iBeam][iPol]; |
---|
2252 | } |
---|
2253 | |
---|
2254 | if (sALFAcalNon[iBeam][iPol] && sALFAcalNoff[iBeam][iPol]) { |
---|
2255 | // Tcal should come from the TCAL table, it varies weakly with beam, |
---|
2256 | // polarization, and frequency. However, TCAL is not written properly. |
---|
2257 | float Tcal = 12.0f; |
---|
2258 | sALFAcal[iBeam][iPol] = Tcal / (sALFAcalOn[iBeam][iPol] - |
---|
2259 | sALFAcalOff[iBeam][iPol]); |
---|
2260 | |
---|
2261 | // Scale from K to Jy; the gain also varies weakly with beam, |
---|
2262 | // polarization, frequency, and zenith angle. |
---|
2263 | float fluxCal = 10.0f; |
---|
2264 | sALFAcal[iBeam][iPol] /= fluxCal; |
---|
2265 | } |
---|
2266 | |
---|
2267 | return 0; |
---|
2268 | } |
---|
2269 | |
---|
2270 | //----------------------------------------------------- SDFITSreader::alfaGain |
---|
2271 | |
---|
2272 | // ALFA gain factor. |
---|
2273 | |
---|
2274 | float SDFITSreader::alfaGain( |
---|
2275 | float zd) |
---|
2276 | { |
---|
2277 | // Gain vs zenith distance table from Robert Minchin, 2008/12/08. |
---|
2278 | const int nZD = 37; |
---|
2279 | const float zdLim[] = {1.5f, 19.5f}; |
---|
2280 | const float zdInc = (nZD - 1) / (zdLim[1] - zdLim[0]); |
---|
2281 | float zdGain[] = { 1.00723708, |
---|
2282 | 1.16644573, 1.15003645, 1.07117307, 1.02532673, |
---|
2283 | 1.01788402, 1.01369524, 1.00000000, 0.989855111, |
---|
2284 | 0.990888834, 0.993996620, 0.989964068, 0.982213855, |
---|
2285 | 0.978662670, 0.979349494, 0.978478372, 0.974631131, |
---|
2286 | 0.972126007, 0.972835243, 0.972742677, 0.968671739, |
---|
2287 | 0.963891327, 0.963452935, 0.966831207, 0.969585896, |
---|
2288 | 0.970700860, 0.972644389, 0.973754644, 0.967344403, |
---|
2289 | 0.952168941, 0.937160134, 0.927843094, 0.914048433, |
---|
2290 | 0.886700928, 0.864701211, 0.869126320, 0.854309499}; |
---|
2291 | |
---|
2292 | float gain; |
---|
2293 | // Do table lookup by linear interpolation. |
---|
2294 | float lambda = zdInc * (zd - zdLim[0]); |
---|
2295 | int j = int(lambda); |
---|
2296 | if (j < 0) { |
---|
2297 | gain = zdGain[0]; |
---|
2298 | } else if (j >= nZD-1) { |
---|
2299 | gain = zdGain[nZD-1]; |
---|
2300 | } else { |
---|
2301 | gain = zdGain[j] + (lambda - j) * (zdGain[j+1] - zdGain[j]); |
---|
2302 | } |
---|
2303 | |
---|
2304 | return gain; |
---|
2305 | } |
---|
2306 | |
---|