1 | // |
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2 | // C++ Implementation: STFrequencies |
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3 | // |
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4 | // Description: |
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5 | // |
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6 | // |
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7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2006 |
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8 | // |
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9 | // Copyright: See COPYING file that comes with this distribution |
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10 | // |
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11 | // |
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12 | #include <casa/iostream.h> |
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13 | #include <casa/iomanip.h> |
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14 | #include <casa/Exceptions/Error.h> |
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15 | #include <casa/Containers/RecordField.h> |
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16 | #include <casa/Arrays/IPosition.h> |
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17 | #include <casa/Logging/LogIO.h> |
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18 | |
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19 | #include <tables/Tables/TableDesc.h> |
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20 | #include <tables/Tables/SetupNewTab.h> |
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21 | #include <tables/Tables/ScaColDesc.h> |
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22 | #include <tables/Tables/TableRecord.h> |
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23 | #include <tables/Tables/TableParse.h> |
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24 | #include <tables/Tables/TableRow.h> |
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25 | |
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26 | #include <coordinates/Coordinates/CoordinateSystem.h> |
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27 | #include <coordinates/Coordinates/CoordinateUtil.h> |
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28 | |
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29 | #include "STFrequencies.h" |
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30 | |
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31 | |
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32 | using namespace casa; |
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33 | |
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34 | namespace asap { |
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35 | |
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36 | const String STFrequencies::name_ = "FREQUENCIES"; |
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37 | |
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38 | STFrequencies::STFrequencies(const Scantable& parent) : |
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39 | STSubTable(parent, name_) |
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40 | { |
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41 | setup(); |
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42 | } |
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43 | |
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44 | STFrequencies::STFrequencies( casa::Table tab ) : |
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45 | STSubTable(tab, name_) |
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46 | { |
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47 | refpixCol_.attach(table_,"REFPIX"); |
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48 | refvalCol_.attach(table_,"REFVAL"); |
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49 | incrCol_.attach(table_,"INCREMENT"); |
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50 | |
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51 | } |
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52 | |
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53 | STFrequencies::~STFrequencies() |
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54 | { |
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55 | } |
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56 | |
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57 | STFrequencies & STFrequencies::operator=( const STFrequencies & other ) |
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58 | { |
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59 | if ( this != &other ) { |
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60 | static_cast<STSubTable&>(*this) = other; |
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61 | refpixCol_.attach(table_,"REFPIX"); |
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62 | refvalCol_.attach(table_,"REFVAL"); |
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63 | incrCol_.attach(table_,"INCREMENT"); |
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64 | } |
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65 | return *this; |
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66 | } |
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67 | |
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68 | void STFrequencies::setup( ) |
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69 | { |
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70 | // add to base class table |
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71 | table_.addColumn(ScalarColumnDesc<Double>("REFPIX")); |
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72 | table_.addColumn(ScalarColumnDesc<Double>("REFVAL")); |
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73 | table_.addColumn(ScalarColumnDesc<Double>("INCREMENT")); |
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74 | |
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75 | table_.rwKeywordSet().define("FRAME", String("TOPO")); |
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76 | table_.rwKeywordSet().define("BASEFRAME", String("TOPO")); |
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77 | table_.rwKeywordSet().define("EQUINOX",String( "J2000")); |
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78 | table_.rwKeywordSet().define("UNIT", String("")); |
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79 | table_.rwKeywordSet().define("DOPPLER", String("RADIO")); |
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80 | |
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81 | // new cached columns |
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82 | refpixCol_.attach(table_,"REFPIX"); |
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83 | refvalCol_.attach(table_,"REFVAL"); |
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84 | incrCol_.attach(table_,"INCREMENT"); |
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85 | } |
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86 | |
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87 | uInt STFrequencies::addEntry( Double refpix, Double refval, Double inc ) |
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88 | { |
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89 | // test if this already exists |
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90 | Table result = table_( near(table_.col("REFVAL"), refval) |
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91 | && near(table_.col("REFPIX"), refpix) |
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92 | && near(table_.col("INCREMENT"), inc), 1 ); |
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93 | uInt resultid = 0; |
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94 | if ( result.nrow() > 0) { |
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95 | ROScalarColumn<uInt> c(result, "ID"); |
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96 | c.get(0, resultid); |
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97 | |
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98 | } else { |
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99 | uInt rno = table_.nrow(); |
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100 | table_.addRow(); |
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101 | // get last assigned freq_id and increment |
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102 | if ( rno > 0 ) { |
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103 | idCol_.get(rno-1, resultid); |
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104 | resultid++; |
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105 | } |
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106 | refpixCol_.put(rno, refpix); |
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107 | refvalCol_.put(rno, refval); |
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108 | incrCol_.put(rno, inc); |
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109 | idCol_.put(rno, resultid); |
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110 | } |
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111 | return resultid; |
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112 | } |
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113 | |
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114 | |
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115 | |
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116 | void STFrequencies::getEntry( Double& refpix, Double& refval, Double& inc, |
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117 | uInt id ) |
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118 | { |
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119 | Table t = table_(table_.col("ID") == Int(id), 1 ); |
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120 | if (t.nrow() == 0 ) { |
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121 | throw(AipsError("STFrequencies::getEntry - freqID out of range")); |
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122 | } |
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123 | ROTableRow row(t); |
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124 | // get first row - there should only be one matching id |
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125 | const TableRecord& rec = row.get(0); |
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126 | refpix = rec.asDouble("REFPIX"); |
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127 | refval = rec.asDouble("REFVAL"); |
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128 | inc = rec.asDouble("INCREMENT"); |
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129 | } |
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130 | |
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131 | void STFrequencies::setEntry( Double refpix, Double refval, Double inc, uInt id ) |
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132 | { |
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133 | Table t = table_(table_.col("ID") == Int(id), 1 ); |
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134 | if (t.nrow() == 0 ) { |
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135 | throw(AipsError("STFrequencies::getEntry - freqID out of range")); |
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136 | } |
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137 | for ( uInt i = 0 ; i < table_.nrow() ; i++ ) { |
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138 | uInt fid ; |
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139 | idCol_.get( i, fid ) ; |
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140 | if ( fid == id ) { |
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141 | refpixCol_.put( i, refpix ) ; |
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142 | refvalCol_.put( i, refval ) ; |
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143 | incrCol_.put( i, inc ) ; |
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144 | } |
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145 | } |
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146 | } |
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147 | |
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148 | SpectralCoordinate STFrequencies::getSpectralCoordinate( uInt id ) const |
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149 | { |
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150 | Table t = table_(table_.col("ID") == Int(id), 1 ); |
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151 | |
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152 | if (t.nrow() == 0 ) { |
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153 | throw(AipsError("STFrequencies::getSpectralCoordinate - ID out of range")); |
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154 | } |
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155 | |
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156 | // get the data |
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157 | ROTableRow row(t); |
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158 | // get first row - there should only be one matching id |
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159 | const TableRecord& rec = row.get(0); |
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160 | return SpectralCoordinate( getFrame(true), rec.asDouble("REFVAL"), |
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161 | rec.asDouble("INCREMENT"), |
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162 | rec.asDouble("REFPIX")); |
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163 | } |
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164 | |
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165 | /** |
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166 | SpectralCoordinate |
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167 | STFrequencies::getSpectralCoordinate( const MDirection& md, |
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168 | const MPosition& mp, |
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169 | const MEpoch& me, |
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170 | Double restfreq, uInt id ) const |
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171 | **/ |
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172 | SpectralCoordinate |
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173 | STFrequencies::getSpectralCoordinate( const MDirection& md, |
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174 | const MPosition& mp, |
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175 | const MEpoch& me, |
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176 | Vector<Double> restfreq, uInt id ) const |
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177 | { |
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178 | SpectralCoordinate spc = getSpectralCoordinate(id); |
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179 | //spc.setRestFrequency(restfreq, True); |
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180 | // for now just use the first rest frequency |
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181 | if (restfreq.nelements()==0 ) { |
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182 | restfreq.resize(1); |
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183 | restfreq[0] = 0; |
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184 | } |
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185 | spc.setRestFrequency(restfreq[0], True); |
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186 | if ( !spc.setReferenceConversion(getFrame(), me, mp, md) ) { |
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187 | throw(AipsError("Couldn't convert frequency frame.")); |
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188 | } |
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189 | String unitstr = getUnitString(); |
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190 | if ( !unitstr.empty() ) { |
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191 | Unit unitu(unitstr); |
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192 | if ( unitu == Unit("Hz") ) { |
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193 | Vector<String> wau(1); wau = unitu.getName(); |
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194 | spc.setWorldAxisUnits(wau); |
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195 | } else { |
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196 | spc.setVelocity(unitstr, getDoppler()); |
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197 | } |
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198 | } |
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199 | return spc; |
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200 | } |
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201 | |
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202 | |
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203 | void STFrequencies::rescale( Float factor, const std::string& mode ) |
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204 | { |
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205 | TableRow row(table_); |
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206 | TableRecord& outrec = row.record(); |
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207 | RecordFieldPtr<Double> rv(outrec, "REFVAL"); |
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208 | RecordFieldPtr<Double> rp(outrec, "REFPIX"); |
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209 | RecordFieldPtr<Double> inc(outrec, "INCREMENT"); |
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210 | for (uInt i=0; i<table_.nrow(); ++i) { |
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211 | |
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212 | const TableRecord& rec = row.get(i); |
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213 | |
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214 | SpectralCoordinate sc ( getFrame(true), rec.asDouble("REFVAL"), |
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215 | rec.asDouble("INCREMENT"), rec.asDouble("REFPIX") ); |
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216 | |
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217 | SpectralCoordinate scout; |
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218 | if (mode == "BIN") { |
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219 | scout = binCsys(sc, Int(factor)); |
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220 | } else if (mode == "RESAMPLE") { |
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221 | scout = resampleCsys(sc, factor); |
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222 | } |
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223 | *rv = scout.referenceValue()[0]; |
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224 | *rp = scout.referencePixel()[0]; |
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225 | *inc = scout.increment()[0]; |
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226 | row.put(i); |
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227 | } |
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228 | } |
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229 | |
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230 | SpectralCoordinate STFrequencies::binCsys(const SpectralCoordinate& sc, |
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231 | Int factor) |
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232 | { |
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233 | CoordinateSystem csys; |
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234 | csys.addCoordinate(sc); |
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235 | IPosition factors(1, factor); |
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236 | CoordinateSystem binnedcs = |
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237 | CoordinateUtil::makeBinnedCoordinateSystem(factors, csys, False); |
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238 | return binnedcs.spectralCoordinate(0); |
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239 | } |
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240 | |
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241 | SpectralCoordinate STFrequencies::resampleCsys(const SpectralCoordinate& sc, |
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242 | Float width) |
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243 | { |
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244 | Vector<Float> offset(1,0.0); |
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245 | Vector<Float> factors(1,width); |
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246 | Vector<Int> newshape; |
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247 | CoordinateSystem csys; |
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248 | csys.addCoordinate(sc); |
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249 | CoordinateSystem csys2 = csys.subImage(offset, factors, newshape); |
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250 | return csys2.spectralCoordinate(0); |
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251 | } |
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252 | |
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253 | |
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254 | MFrequency::Types STFrequencies::getFrame(bool base) const |
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255 | { |
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256 | // get the ref frame |
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257 | String rf; |
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258 | if ( base ) |
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259 | rf = table_.keywordSet().asString("BASEFRAME"); |
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260 | else |
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261 | rf = table_.keywordSet().asString("FRAME"); |
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262 | |
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263 | // Create SpectralCoordinate (units Hz) |
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264 | MFrequency::Types mft; |
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265 | if (!MFrequency::getType(mft, rf)) { |
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266 | ostringstream oss; |
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267 | LogIO os( casa::LogOrigin( "STFrequencies", "getFrame") ); |
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268 | os << LogIO::WARN << "WARNING: Frequency type unknown assuming TOPO" |
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269 | << LogIO::POST; |
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270 | mft = MFrequency::TOPO; |
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271 | } |
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272 | |
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273 | return mft; |
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274 | } |
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275 | |
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276 | std::string STFrequencies::getFrameString( bool base ) const |
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277 | { |
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278 | if ( base ) return table_.keywordSet().asString("BASEFRAME"); |
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279 | else return table_.keywordSet().asString("FRAME"); |
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280 | } |
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281 | |
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282 | std::string STFrequencies::getUnitString( ) const |
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283 | { |
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284 | return table_.keywordSet().asString("UNIT"); |
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285 | } |
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286 | |
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287 | Unit STFrequencies::getUnit( ) const |
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288 | { |
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289 | return Unit(table_.keywordSet().asString("UNIT")); |
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290 | } |
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291 | |
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292 | std::string STFrequencies::getDopplerString( ) const |
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293 | { |
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294 | return table_.keywordSet().asString("DOPPLER"); |
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295 | } |
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296 | |
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297 | MDoppler::Types STFrequencies::getDoppler( ) const |
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298 | { |
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299 | String dpl = table_.keywordSet().asString("DOPPLER"); |
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300 | |
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301 | // Create SpectralCoordinate (units Hz) |
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302 | MDoppler::Types mdt; |
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303 | if (!MDoppler::getType(mdt, dpl)) { |
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304 | throw(AipsError("Doppler type unknown")); |
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305 | } |
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306 | return mdt; |
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307 | } |
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308 | |
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309 | std::string STFrequencies::print( int id, Bool strip ) const |
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310 | { |
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311 | Table t; |
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312 | ostringstream oss; |
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313 | if ( id < 0 ) t = table_; |
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314 | else t = table_(table_.col("ID") == Int(id), 1 ); |
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315 | ROTableRow row(t); |
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316 | for (uInt i=0; i<t.nrow(); ++i) { |
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317 | const TableRecord& rec = row.get(i); |
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318 | oss << setw(8) |
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319 | << t.keywordSet().asString("FRAME") << setw(16) << setprecision(8) |
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320 | << rec.asDouble("REFVAL") << setw(7) |
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321 | << rec.asDouble("REFPIX") |
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322 | << setw(15) |
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323 | << rec.asDouble("INCREMENT"); |
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324 | } |
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325 | String outstr(oss); |
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326 | if (strip) { |
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327 | int f = outstr.find_first_not_of(' '); |
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328 | int l = outstr.find_last_not_of(' ', outstr.size()); |
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329 | if (f < 0) { |
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330 | f = 0; |
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331 | } |
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332 | if ( l < f || l < f ) { |
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333 | l = outstr.size(); |
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334 | } |
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335 | return outstr.substr(f,l); |
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336 | } |
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337 | return outstr; |
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338 | } |
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339 | |
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340 | float STFrequencies::getRefFreq( uInt id, uInt channel ) |
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341 | { |
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342 | Table t = table_(table_.col("ID") == Int(id), 1 ); |
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343 | if ( t.nrow() == 0 ) throw(AipsError("Selected Illegal frequency id")); |
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344 | ROTableRow row(t); |
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345 | const TableRecord& rec = row.get(0); |
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346 | return (Double(channel/2) - rec.asDouble("REFPIX")) |
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347 | * rec.asDouble("INCREMENT") + rec.asDouble("REFVAL"); |
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348 | } |
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349 | |
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350 | bool STFrequencies::conformant( const STFrequencies& other ) const |
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351 | { |
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352 | const Record& r = table_.keywordSet(); |
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353 | const Record& ro = other.table_.keywordSet(); |
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354 | return ( r.asString("FRAME") == ro.asString("FRAME") && |
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355 | r.asString("EQUINOX") == ro.asString("EQUINOX") && |
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356 | r.asString("UNIT") == ro.asString("UNIT") && |
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357 | r.asString("DOPPLER") == ro.asString("DOPPLER") |
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358 | ); |
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359 | } |
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360 | |
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361 | std::vector< std::string > STFrequencies::getInfo( ) const |
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362 | { |
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363 | const Record& r = table_.keywordSet(); |
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364 | std::vector<std::string> out; |
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365 | out.push_back(r.asString("UNIT")); |
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366 | out.push_back(r.asString("FRAME")); |
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367 | out.push_back(r.asString("DOPPLER")); |
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368 | return out; |
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369 | } |
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370 | |
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371 | void STFrequencies::setInfo( const std::vector< std::string >& theinfo ) |
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372 | { |
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373 | if ( theinfo.size() != 3 ) throw(AipsError("setInfo needs three parameters")); |
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374 | try { |
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375 | setUnit(theinfo[0]); |
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376 | setFrame(theinfo[1]); |
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377 | setDoppler(theinfo[2]); |
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378 | } catch (AipsError& e) { |
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379 | throw(e); |
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380 | } |
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381 | } |
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382 | |
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383 | void STFrequencies::setUnit( const std::string & unit ) |
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384 | { |
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385 | if (unit == "" || unit == "pixel" || unit == "channel" ) { |
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386 | table_.rwKeywordSet().define("UNIT", ""); |
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387 | } else { |
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388 | Unit u(unit); |
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389 | if ( u == Unit("km/s") || u == Unit("Hz") ) |
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390 | table_.rwKeywordSet().define("UNIT", unit); |
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391 | else { |
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392 | throw(AipsError("Illegal spectral unit.")); |
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393 | } |
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394 | } |
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395 | } |
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396 | |
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397 | void STFrequencies::setFrame(MFrequency::Types frame, bool base ) |
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398 | { |
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399 | String f = MFrequency::showType(frame); |
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400 | if (base) |
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401 | table_.rwKeywordSet().define("BASEFRAME", f); |
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402 | else |
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403 | table_.rwKeywordSet().define("FRAME", f); |
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404 | |
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405 | } |
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406 | |
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407 | void STFrequencies::setFrame( const std::string & frame, bool base ) |
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408 | { |
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409 | MFrequency::Types mdr; |
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410 | if (!MFrequency::getType(mdr, frame)) { |
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411 | Int a,b;const uInt* c; |
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412 | const String* valid = MFrequency::allMyTypes(a, b, c); |
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413 | Vector<String> ftypes(IPosition(1,a), valid); |
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414 | ostringstream oss; |
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415 | oss << String("Please specify a legal frequency type. Types are\n"); |
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416 | oss << ftypes; |
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417 | String msg(oss); |
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418 | throw(AipsError(msg)); |
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419 | } else { |
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420 | if (base) |
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421 | table_.rwKeywordSet().define("BASEFRAME", frame); |
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422 | else |
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423 | table_.rwKeywordSet().define("FRAME", frame); |
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424 | } |
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425 | } |
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426 | |
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427 | void STFrequencies::setDoppler( const std::string & doppler ) |
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428 | { |
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429 | MDoppler::Types mdt; |
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430 | if (!MDoppler::getType(mdt, doppler)) { |
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431 | Int a,b;const uInt* c; |
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432 | const String* valid = MDoppler::allMyTypes(a, b, c); |
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433 | Vector<String> ftypes(IPosition(1,a), valid); |
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434 | ostringstream oss; |
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435 | oss << String("Please specify a legal doppler type. Types are\n"); |
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436 | oss << ftypes; |
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437 | String msg(oss); |
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438 | throw(AipsError(msg)); |
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439 | } else { |
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440 | table_.rwKeywordSet().define("DOPPLER", doppler); |
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441 | } |
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442 | } |
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443 | |
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444 | void STFrequencies::shiftRefPix(int npix, uInt id) |
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445 | { |
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446 | Table t = table_(table_.col("ID") == Int(id), 1 ); |
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447 | if ( t.nrow() == 0 ) throw(AipsError("Selected Illegal frequency id")); |
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448 | ScalarColumn<Double> tcol(t, "REFPIX"); |
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449 | tcol.put(0, tcol(0)+Double(npix)); |
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450 | } |
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451 | |
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452 | } // namespace |
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