1 | // |
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2 | // C++ Implimentation: GenericEdgeDetector |
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3 | // |
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4 | // Description: |
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5 | // |
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6 | // |
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7 | // Author: Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2012 |
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8 | // |
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9 | // Copyright: See COPYING file that comes with this distribution |
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10 | // |
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11 | // |
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12 | #include <math.h> |
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13 | |
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14 | #include <casa/Arrays/Vector.h> |
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15 | #include <casa/Arrays/Matrix.h> |
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16 | #include <casa/Arrays/ArrayMath.h> |
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17 | #include <casa/Arrays/ArrayIO.h> |
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18 | #include <casa/Utilities/GenSort.h> |
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19 | |
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20 | #include <coordinates/Coordinates/DirectionCoordinate.h> |
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21 | |
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22 | #include "GenericEdgeDetector.h" |
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23 | |
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24 | using namespace std ; |
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25 | using namespace casa ; |
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26 | |
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27 | namespace asap { |
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28 | |
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29 | GenericEdgeDetector::GenericEdgeDetector() |
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30 | : EdgeDetector() |
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31 | {} |
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32 | |
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33 | GenericEdgeDetector::~GenericEdgeDetector() |
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34 | {} |
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35 | |
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36 | Vector<uInt> GenericEdgeDetector::detect() |
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37 | { |
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38 | os_.origin(LogOrigin( "GenericEdgeDetector", "detect", WHERE )) ; |
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39 | |
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40 | initDetect() ; |
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41 | |
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42 | topixel() ; |
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43 | countup() ; |
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44 | thresholding() ; |
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45 | labeling() ; |
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46 | trimming() ; |
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47 | selection() ; |
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48 | tuning() ; |
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49 | |
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50 | os_ << LogIO::DEBUGGING |
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51 | << "Detected " << off_.nelements() << " integrations as OFF" << LogIO::POST ; |
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52 | |
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53 | return off_ ; |
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54 | } |
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55 | |
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56 | void GenericEdgeDetector::parseOption( const Record &option ) |
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57 | { |
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58 | os_.origin(LogOrigin( "GenericEdgeDetector", "parseOption", WHERE )) ; |
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59 | |
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60 | String name = "fraction" ; |
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61 | if ( option.isDefined( name ) ) { |
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62 | if ( option.dataType( name ) == TpString ) { |
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63 | // should be "xx%" format |
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64 | String fstr = option.asString( name ) ; |
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65 | fstr = fstr.substr(0,fstr.size()-1) ; |
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66 | fraction_ = String::toFloat( fstr ) * 0.01 ; |
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67 | } |
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68 | else { |
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69 | fraction_ = option.asFloat( name ) ; |
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70 | } |
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71 | } |
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72 | else { |
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73 | fraction_ = 0.1 ; // default is 10% |
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74 | } |
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75 | |
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76 | name = "width" ; |
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77 | if ( option.isDefined( name ) ) { |
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78 | width_ = option.asFloat( name ) ; |
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79 | } |
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80 | else { |
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81 | width_ = 0.5 ; // default is half of median separation |
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82 | } |
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83 | |
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84 | name = "elongated" ; |
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85 | if ( option.isDefined( name ) ) { |
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86 | elongated_ = option.asBool( name ) ; |
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87 | } |
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88 | else { |
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89 | elongated_ = False ; // default is two-dimensional processing |
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90 | } |
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91 | |
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92 | os_ << "OPTION SUMMARY: " << endl |
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93 | << " fraction=" << fraction_ << endl |
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94 | << " width=" << width_ << endl |
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95 | << " elongated=" << (elongated_ ? "True" : "False") << LogIO::POST ; |
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96 | } |
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97 | |
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98 | void GenericEdgeDetector::topixel() |
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99 | { |
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100 | // os_.origin(LogOrigin( "GenericEdgeDetector", "topixel", WHERE )) ; |
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101 | |
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102 | setup() ; |
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103 | // using DirectionCoordinate |
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104 | Matrix<Double> xform(2,2) ; |
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105 | xform = 0.0 ; |
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106 | xform.diagonal() = 1.0 ; |
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107 | DirectionCoordinate coord( MDirection::J2000, |
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108 | Projection( Projection::SIN ), |
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109 | cenx_, ceny_, |
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110 | dx_, dy_, |
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111 | xform, |
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112 | 0.5*Double(nx_-1), |
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113 | 0.5*Double(ny_-1) ) ; |
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114 | Double *pdir_p = new Double[dir_.nelements()] ; |
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115 | pdir_.takeStorage( dir_.shape(), pdir_p, TAKE_OVER ) ; |
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116 | uInt len = time_.nelements() ; |
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117 | Bool b ; |
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118 | Double *dir_p = dir_.getStorage( b ) ; |
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119 | Double *wdir_p = dir_p ; |
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120 | Vector<Double> world ; |
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121 | Vector<Double> pixel ; |
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122 | IPosition vshape( 1, 2 ) ; |
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123 | for ( uInt i = 0 ; i < len ; i++ ) { |
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124 | world.takeStorage( vshape, wdir_p, SHARE ) ; |
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125 | pixel.takeStorage( vshape, pdir_p, SHARE ) ; |
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126 | coord.toPixel( pixel, world ) ; |
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127 | pdir_p += 2 ; |
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128 | wdir_p += 2 ; |
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129 | } |
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130 | dir_.putStorage( dir_p, b ) ; |
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131 | } |
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132 | |
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133 | void GenericEdgeDetector::setup() |
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134 | { |
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135 | os_.origin(LogOrigin( "GenericEdgeDetector", "setup", WHERE )) ; |
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136 | |
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137 | Double xmax, xmin, ymax, ymin ; |
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138 | minMax( xmin, xmax, dir_.row( 0 ) ) ; |
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139 | minMax( ymin, ymax, dir_.row( 1 ) ) ; |
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140 | Double wx = ( xmax - xmin ) * 1.1 ; |
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141 | Double wy = ( ymax - ymin ) * 1.1 ; |
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142 | |
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143 | cenx_ = 0.5 * ( xmin + xmax ) ; |
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144 | ceny_ = 0.5 * ( ymin + ymax ) ; |
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145 | Double decCorr = cos( ceny_ ) ; |
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146 | |
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147 | uInt len = time_.nelements() ; |
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148 | Matrix<Double> dd = dir_.copy() ; |
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149 | for ( uInt i = len-1 ; i > 0 ; i-- ) { |
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150 | //dd(0,i) = ( dd(0,i) - dd(0,i-1) ) * decCorr ; |
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151 | dd(0,i) = ( dd(0,i) - dd(0,i-1) ) * cos( 0.5*(dd(1,i-1)+dd(1,i)) ) ; |
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152 | dd(1,i) = dd(1,i) - dd(1,i-1) ; |
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153 | } |
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154 | Vector<Double> dr( len-1 ) ; |
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155 | Bool b ; |
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156 | const Double *dir_p = dd.getStorage( b ) ; |
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157 | const Double *x_p = dir_p + 2 ; |
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158 | const Double *y_p = dir_p + 3 ; |
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159 | for ( uInt i = 0 ; i < len-1 ; i++ ) { |
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160 | dr[i] = sqrt( (*x_p) * (*x_p) + (*y_p) * (*y_p) ) ; |
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161 | x_p += 2 ; |
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162 | y_p += 2 ; |
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163 | } |
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164 | dir_.freeStorage( dir_p, b ) ; |
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165 | Double med = median( dr, False, True, True ) ; |
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166 | dy_ = med * width_ ; |
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167 | dx_ = dy_ / decCorr ; |
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168 | |
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169 | nx_ = uInt( ceil( wx / dx_ ) ) ; |
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170 | ny_ = uInt( ceil( wy / dy_ ) ) ; |
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171 | |
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172 | pcenx_ = 0.5 * Double( nx_ - 1 ) ; |
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173 | pceny_ = 0.5 * Double( ny_ - 1 ) ; |
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174 | |
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175 | os_ << LogIO::DEBUGGING |
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176 | << "rangex=(" << xmin << "," << xmax << ")" << endl |
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177 | << "rangey=(" << ymin << "," << ymax << ")" << endl |
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178 | << "median separation between pointings: " << med << endl |
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179 | << "dx=" << dx_ << ", dy=" << dy_ << endl |
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180 | << "wx=" << wx << ", wy=" << wy << endl |
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181 | << "nx=" << nx_ << ", ny=" << ny_ << LogIO::POST ; |
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182 | } |
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183 | |
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184 | void GenericEdgeDetector::countup() |
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185 | { |
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186 | os_.origin(LogOrigin( "GenericEdgeDetector", "countup", WHERE )) ; |
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187 | |
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188 | uInt *a_p = new uInt[nx_*ny_] ; |
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189 | apix_.takeStorage( IPosition(2,nx_,ny_), a_p, TAKE_OVER ) ; |
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190 | apix_ = 0 ; |
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191 | |
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192 | uInt len = time_.nelements() ; |
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193 | uInt ix ; |
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194 | uInt iy ; |
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195 | // pdir_ is always contiguous |
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196 | const Double *pdir_p = pdir_.data() ; |
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197 | const Double *px_p = pdir_p ; |
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198 | const Double *py_p = pdir_p + 1 ; |
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199 | long offset ; |
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200 | for ( uInt i = 0 ; i < len ; i++ ) { |
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201 | ix = uInt(round( *px_p )) ; |
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202 | iy = uInt(round( *py_p )) ; |
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203 | offset = ix + iy * nx_ ; |
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204 | *(a_p+offset) += 1 ; |
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205 | px_p += 2 ; |
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206 | py_p += 2 ; |
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207 | } |
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208 | |
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209 | os_ << LogIO::DEBUGGING |
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210 | << "a.max()=" << max(apix_) << ",a.min()=" << min(apix_) << LogIO::POST ; |
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211 | } |
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212 | |
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213 | void GenericEdgeDetector::thresholding() |
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214 | { |
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215 | uInt len = apix_.nelements() ; |
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216 | uInt *a_p = apix_.data() ; |
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217 | for ( uInt i = 0 ; i < len ; i++ ) { |
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218 | *a_p = ((*a_p > 0) ? 1 : 0) ; |
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219 | a_p++ ; |
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220 | } |
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221 | } |
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222 | |
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223 | void GenericEdgeDetector::labeling() |
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224 | { |
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225 | os_.origin(LogOrigin( "GenericEdgeDetector", "labeling", WHERE )) ; |
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226 | |
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227 | uInt n = 1 ; |
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228 | uInt niter = 0 ; |
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229 | const uInt maxiter = 100 ; |
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230 | while ( n > 0 && niter < maxiter ) { |
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231 | n = _labeling() ; |
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232 | os_ << LogIO::DEBUGGING |
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233 | << "cycle " << niter << ": labeled " << n << " pixels" << LogIO::POST ; |
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234 | niter++ ; |
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235 | } |
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236 | if ( niter == maxiter ) { |
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237 | // WARN |
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238 | os_ << LogIO::WARN << "labeling not converged before maxiter=" << maxiter << LogIO::POST ; |
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239 | } |
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240 | } |
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241 | |
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242 | uInt GenericEdgeDetector::_labeling() |
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243 | { |
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244 | uInt n = 0 ; |
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245 | for ( uInt ix = 0 ; ix < nx_ ; ix++ ) { |
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246 | Vector<uInt> v( apix_.row( ix ) ) ; |
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247 | uInt nx = __labeling( v ) ; |
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248 | n += nx ; |
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249 | } |
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250 | for ( uInt iy = 0 ; iy < ny_ ; iy++ ) { |
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251 | Vector<uInt> v( apix_.column( iy ) ) ; |
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252 | uInt ny = __labeling( v ) ; |
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253 | n += ny ; |
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254 | } |
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255 | return n ; |
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256 | } |
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257 | |
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258 | uInt GenericEdgeDetector::__labeling( Vector<uInt> &a ) |
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259 | { |
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260 | uInt n = 0 ; |
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261 | if ( allEQ( a, n ) ) { |
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262 | return n ; |
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263 | } |
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264 | |
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265 | uInt start ; |
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266 | uInt end ; |
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267 | _search( start, end, a ) ; |
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268 | for ( uInt i = start+1 ; i < end ; i++ ) { |
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269 | if ( a[i] == 0 ) { |
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270 | a[i] = 1 ; |
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271 | n++ ; |
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272 | } |
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273 | } |
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274 | return n ; |
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275 | } |
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276 | |
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277 | void GenericEdgeDetector::_search( uInt &start, |
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278 | uInt &end, |
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279 | const Vector<uInt> &a ) |
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280 | { |
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281 | uInt n = a.nelements() ; |
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282 | start = 0 ; |
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283 | while( a[start] == 0 ) { |
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284 | start++ ; |
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285 | } |
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286 | end = n - 1 ; |
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287 | while( a[end] == 0 ) { |
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288 | end-- ; |
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289 | } |
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290 | } |
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291 | |
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292 | void GenericEdgeDetector::trimming() |
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293 | { |
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294 | os_.origin(LogOrigin( "GenericEdgeDetector", "trimming", WHERE )) ; |
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295 | |
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296 | const uInt n1 = sum( apix_ ) ; |
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297 | const uInt nTrim = uInt(ceil( n1 * fraction_ )) ; |
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298 | os_ << LogIO::DEBUGGING |
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299 | << "number of nonzero pixel: " << n1 << endl |
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300 | << "number of pixels to be trimmed: " << nTrim << LogIO::POST ; |
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301 | uInt n = 0 ; |
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302 | uInt niter = 0 ; |
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303 | const uInt maxiter = 100 ; |
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304 | if ( !elongated_ ) { |
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305 | while ( n < nTrim && niter < maxiter ) { |
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306 | uInt m = _trimming() ; |
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307 | os_ << LogIO::DEBUGGING |
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308 | << "cycle " << niter << ": trimmed " << m << " pixels" << LogIO::POST ; |
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309 | n += m ; |
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310 | niter++ ; |
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311 | } |
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312 | } |
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313 | else if ( nx_ > ny_ ) { |
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314 | os_ << "1D triming along x-axis" << LogIO::POST ; |
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315 | while ( n < nTrim && niter < maxiter ) { |
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316 | uInt m = _trimming1DX() ; |
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317 | os_ << LogIO::DEBUGGING |
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318 | << "cycle " << niter << ": trimmed " << m << " pixels" << LogIO::POST ; |
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319 | n += m ; |
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320 | niter++ ; |
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321 | } |
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322 | } |
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323 | else { // nx_ < ny_ |
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324 | os_ << "1D triming along y-axis" << LogIO::POST ; |
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325 | while ( n < nTrim && niter < maxiter ) { |
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326 | uInt m = _trimming1DY() ; |
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327 | os_ << LogIO::DEBUGGING |
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328 | << "cycle " << niter << ": trimmed " << m << " pixels" << LogIO::POST ; |
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329 | n += m ; |
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330 | niter++ ; |
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331 | } |
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332 | } |
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333 | os_ << LogIO::DEBUGGING |
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334 | << "number of pixels actually trimmed: " << n << LogIO::POST ; |
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335 | |
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336 | if ( niter == maxiter ) { |
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337 | // WARN |
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338 | os_ << LogIO::WARN << "trimming not converged before maxiter=" << maxiter << LogIO::POST ; |
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339 | } |
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340 | } |
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341 | |
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342 | uInt GenericEdgeDetector::_trimming() |
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343 | { |
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344 | uInt n = 0 ; |
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345 | Block<uInt> flatIdxList( apix_.nelements() ) ; |
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346 | uInt start ; |
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347 | uInt end ; |
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348 | uInt flatIdx ; |
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349 | for ( uInt ix = 0 ; ix < nx_ ; ix++ ) { |
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350 | Vector<uInt> v( apix_.row( ix ) ) ; |
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351 | if ( allEQ( v, (uInt)0 ) ) { |
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352 | continue ; |
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353 | } |
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354 | _search( start, end, v ) ; |
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355 | uInt offset = start * nx_ ; |
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356 | flatIdx = offset + ix ; |
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357 | flatIdxList[n++] = flatIdx ; |
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358 | if ( start != end ) { |
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359 | offset = end * nx_ ; |
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360 | flatIdx = offset + ix ; |
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361 | flatIdxList[n++] = flatIdx ; |
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362 | } |
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363 | } |
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364 | for ( uInt iy = 0 ; iy < ny_ ; iy++ ) { |
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365 | Vector<uInt> v( apix_.column( iy ) ) ; |
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366 | if ( allEQ( v, (uInt)0 ) ) { |
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367 | continue ; |
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368 | } |
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369 | uInt offset = iy * nx_ ; |
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370 | _search( start, end, v ) ; |
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371 | flatIdx = offset + start ; |
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372 | flatIdxList[n++] = flatIdx ; |
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373 | if ( start != end ) { |
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374 | flatIdx = offset + end ; |
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375 | flatIdxList[n++] = flatIdx ; |
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376 | } |
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377 | } |
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378 | n = genSort( flatIdxList.storage(), |
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379 | n, |
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380 | Sort::Ascending, |
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381 | Sort::QuickSort | Sort::NoDuplicates ) ; |
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382 | Vector<uInt> v( IPosition(1,apix_.nelements()), apix_.data(), SHARE ) ; |
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383 | const uInt *idx_p = flatIdxList.storage() ; |
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384 | for ( uInt i = 0 ; i < n ; i++ ) { |
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385 | v[*idx_p] = 0 ; |
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386 | idx_p++ ; |
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387 | } |
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388 | |
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389 | return n ; |
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390 | } |
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391 | |
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392 | uInt GenericEdgeDetector::_trimming1DX() |
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393 | { |
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394 | uInt n = 0 ; |
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395 | const uInt nx = apix_.nrow() ; |
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396 | Vector<uInt> v1, v2 ; |
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397 | uInt ix, jx ; |
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398 | for ( ix = 0 ; ix < nx_ ; ix++ ) { |
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399 | v1.reference( apix_.row( ix ) ) ; |
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400 | if ( anyNE( v1, n ) ) break ; |
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401 | } |
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402 | for ( jx = nx-1 ; jx > ix ; jx-- ) { |
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403 | v2.reference( apix_.row( jx ) ) ; |
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404 | if ( anyNE( v2, n ) ) break ; |
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405 | } |
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406 | n += _trimming1D( v1 ) ; |
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407 | if ( ix != jx ) |
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408 | n+= _trimming1D( v2 ) ; |
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409 | |
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410 | return n ; |
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411 | } |
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412 | |
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413 | uInt GenericEdgeDetector::_trimming1DY() |
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414 | { |
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415 | uInt n = 0 ; |
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416 | const uInt ny = apix_.ncolumn() ; |
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417 | Vector<uInt> v1, v2 ; |
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418 | uInt iy, jy ; |
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419 | for ( iy = 0 ; iy < ny_ ; iy++ ) { |
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420 | v1.reference( apix_.column( iy ) ) ; |
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421 | if ( anyNE( v1, n ) ) break ; |
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422 | } |
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423 | for ( jy = ny-1 ; jy > iy ; jy-- ) { |
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424 | v2.reference( apix_.column( jy ) ) ; |
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425 | if ( anyNE( v2, n ) ) break ; |
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426 | } |
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427 | n += _trimming1D( v1 ) ; |
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428 | if ( iy != jy ) |
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429 | n+= _trimming1D( v2 ) ; |
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430 | |
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431 | return n ; |
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432 | } |
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433 | |
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434 | uInt GenericEdgeDetector::_trimming1D( Vector<uInt> &a ) |
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435 | { |
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436 | uInt len = a.nelements() ; |
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437 | uInt n = 0 ; |
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438 | for ( uInt i = 0 ; i < len ; i++ ) { |
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439 | if ( a[i] == 1 ) { |
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440 | a[i] = 0 ; |
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441 | n++ ; |
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442 | } |
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443 | } |
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444 | |
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445 | return n ; |
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446 | } |
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447 | |
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448 | void GenericEdgeDetector::selection() |
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449 | { |
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450 | // os_.origin(LogOrigin( "GenericEdgeDetector", "selection", WHERE )) ; |
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451 | |
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452 | uInt nrow = pdir_.shape()[1] ; |
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453 | const Double *px_p = pdir_.data() ; |
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454 | const Double *py_p = px_p + 1 ; |
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455 | Vector<uInt> v( IPosition(1,apix_.nelements()), apix_.data(), SHARE ) ; |
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456 | uInt n = 0 ; |
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457 | for ( uInt irow = 0 ; irow < nrow ; irow++ ) { |
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458 | uInt idx = int(round(*px_p)) + int(round(*py_p)) * nx_ ; |
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459 | if ( v[idx] == 0 ) { |
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460 | tempuInt_[n++] = irow ; |
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461 | } |
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462 | px_p += 2 ; |
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463 | py_p += 2 ; |
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464 | } |
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465 | off_ = vectorFromTempStorage( n ) ; |
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466 | } |
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467 | |
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468 | void GenericEdgeDetector::tuning() |
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469 | { |
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470 | os_.origin(LogOrigin( "GenericEdgeDetector", "tuning", WHERE )) ; |
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471 | |
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472 | const uInt len = off_.nelements() ; |
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473 | if ( len == 0 ) |
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474 | return ; |
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475 | |
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476 | Block<uInt> diff( len-1 ) ; |
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477 | for ( uInt i = 0 ; i < len-1 ; i++ ) { |
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478 | diff[i] = off_[i+1] - off_[i] ; |
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479 | } |
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480 | const uInt threshold = 3 ; |
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481 | uInt n = 0 ; |
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482 | for ( uInt i = 0 ; i < len ; i++ ) { |
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483 | tempuInt_[n++] = off_[i] ; |
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484 | } |
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485 | for ( uInt i = 1 ; i < len ; i++ ) { |
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486 | uInt ii = i - 1 ; |
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487 | if ( diff[ii] != 1 && diff[ii] < threshold ) { |
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488 | uInt t = off_[ii]+1 ; |
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489 | uInt u = off_[i] ; |
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490 | for ( uInt j = t ; j < u ; j++ ) { |
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491 | os_ << LogIO::DEBUGGING |
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492 | << "move " << j << " from ON to OFF" << LogIO::POST ; |
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493 | tempuInt_[n++] = j ; |
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494 | } |
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495 | } |
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496 | } |
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497 | if ( n > len ) { |
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498 | off_.resize() ; |
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499 | off_ = vectorFromTempStorage( n ) ; |
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500 | } |
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501 | } |
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502 | |
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503 | } // namespace asap |
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