1 | //#--------------------------------------------------------------------------- |
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2 | //# SDAsciiWriter.cc: ASAP class to write out single dish spectra as FITS images |
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3 | //#--------------------------------------------------------------------------- |
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4 | //# Copyright (C) 2004 |
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5 | //# ATNF |
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6 | //# |
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7 | //# This program is free software; you can redistribute it and/or modify it |
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8 | //# under the terms of the GNU General Public License as published by the Free |
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9 | //# Software Foundation; either version 2 of the License, or (at your option) |
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10 | //# any later version. |
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11 | //# |
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12 | //# This program is distributed in the hope that it will be useful, but |
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13 | //# WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 | //# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General |
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15 | //# Public License for more details. |
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16 | //# |
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17 | //# You should have received a copy of the GNU General Public License along |
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18 | //# with this program; if not, write to the Free Software Foundation, Inc., |
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19 | //# 675 Massachusetts Ave, Cambridge, MA 02139, USA. |
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20 | //# |
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21 | //# Correspondence concerning this software should be addressed as follows: |
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22 | //# Internet email: Malte.Marquarding@csiro.au |
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23 | //# Postal address: Malte Marquarding, |
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24 | //# Australia Telescope National Facility, |
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25 | //# P.O. Box 76, |
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26 | //# Epping, NSW, 2121, |
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27 | //# AUSTRALIA |
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28 | //# |
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29 | //# $Id: SDAsciiWriter.cc 496 2005-02-22 00:21:13Z kil064 $ |
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30 | //#--------------------------------------------------------------------------- |
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31 | |
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32 | #include <casa/aips.h> |
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33 | #include <casa/Arrays/Array.h> |
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34 | #include <casa/Arrays/Vector.h> |
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35 | #include <casa/Arrays/VectorIter.h> |
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36 | #include <casa/Utilities/CountedPtr.h> |
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37 | #include <casa/Quanta/Quantum.h> |
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38 | #include <casa/Quanta/MVAngle.h> |
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39 | #include <casa/Utilities/Assert.h> |
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40 | |
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41 | #include <casa/iostream.h> |
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42 | #include <casa/fstream.h> |
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43 | |
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44 | #include <coordinates/Coordinates/CoordinateUtil.h> |
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45 | #include <coordinates/Coordinates/SpectralCoordinate.h> |
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46 | #include <coordinates/Coordinates/DirectionCoordinate.h> |
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47 | #include <coordinates/Coordinates/StokesCoordinate.h> |
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48 | |
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49 | #include <measures/Measures/MEpoch.h> |
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50 | |
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51 | #include <tables/Tables/Table.h> |
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52 | #include <tables/Tables/ScalarColumn.h> |
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53 | #include <tables/Tables/ArrayColumn.h> |
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54 | |
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55 | #include "SDDefs.h" |
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56 | #include "SDContainer.h" |
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57 | #include "SDMemTable.h" |
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58 | #include "SDAsciiWriter.h" |
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59 | |
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60 | using namespace casa; |
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61 | using namespace asap; |
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62 | |
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63 | |
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64 | SDAsciiWriter::SDAsciiWriter() |
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65 | {;} |
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66 | |
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67 | SDAsciiWriter::~SDAsciiWriter() |
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68 | {;} |
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69 | |
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70 | |
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71 | Bool SDAsciiWriter::write(const SDMemTable& sdTable, const String& fileName, Bool toStokes) |
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72 | { |
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73 | |
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74 | // Get global Header from Table |
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75 | |
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76 | SDHeader header = sdTable.getSDHeader(); |
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77 | MEpoch::Ref timeRef(MEpoch::UTC); // Should be in header |
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78 | MDirection::Types dirRef(MDirection::J2000); // Should be in header |
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79 | |
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80 | // Column keywords |
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81 | |
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82 | Table tab = sdTable.table(); |
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83 | ROArrayColumn<Double> dir(tab, String("DIRECTION")); |
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84 | ROScalarColumn<Double> time(tab, "TIME"); |
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85 | ROArrayColumn<uInt> freqid(tab, "FREQID"); |
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86 | ROScalarColumn<String> src(tab, "SRCNAME"); |
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87 | |
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88 | // Temps |
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89 | |
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90 | Vector<Int> whichStokes(1,1); |
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91 | Array<Double> whichDir; |
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92 | Vector<Double> lonLat(2); |
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93 | IPosition posDir(2,0); |
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94 | const Unit RAD(String("rad")); |
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95 | |
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96 | // Open and write header file |
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97 | |
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98 | |
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99 | String rootName(fileName); |
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100 | if (rootName.length()==0) rootName = String("ascii"); |
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101 | { |
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102 | String fName = String(rootName) + String("_header.txt"); |
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103 | cout << "Writing header to " << fName << endl; |
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104 | ofstream of(fName.chars(), ios::trunc); |
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105 | std::string summary = sdTable.summary(true); |
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106 | of << summary; |
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107 | of.close(); |
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108 | } |
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109 | |
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110 | // Open data file |
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111 | |
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112 | String fName = rootName + String(".txt"); |
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113 | ofstream of(fName.chars(), ios::trunc); |
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114 | |
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115 | // Write header |
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116 | |
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117 | of << "row beam IF pol source longitude latitude time nchan spectrum mask" |
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118 | << endl; |
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119 | |
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120 | // Loop over rows |
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121 | |
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122 | const uInt nRows = sdTable.nRow(); |
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123 | for (uInt iRow=0; iRow<nRows; iRow++) { |
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124 | |
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125 | // Get data |
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126 | |
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127 | const MaskedArray<Float>& dataIn(sdTable.rowAsMaskedArray(iRow,toStokes)); |
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128 | const Array<Float>& values = dataIn.getArray(); |
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129 | const Array<Bool>& mask = dataIn.getMask(); |
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130 | |
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131 | // Get abcissa |
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132 | |
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133 | std::vector<double> abcissa = sdTable.getAbcissa(Int(iRow)); |
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134 | const uInt n = abcissa.size(); |
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135 | |
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136 | // Iterate through data in this row by spectra |
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137 | |
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138 | ReadOnlyVectorIterator<Float> itData(values, asap::ChanAxis); |
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139 | ReadOnlyVectorIterator<Bool> itMask(mask, asap::ChanAxis); |
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140 | while (!itData.pastEnd()) { |
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141 | const IPosition& pos = itData.pos(); |
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142 | AlwaysAssert(itData.vector().nelements()==n,AipsError); |
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143 | |
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144 | // FreqID |
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145 | |
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146 | Vector<uInt> iTmp; |
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147 | freqid.get(iRow, iTmp); |
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148 | |
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149 | // Direction |
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150 | |
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151 | dir.get(iRow, whichDir); |
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152 | posDir(0) = pos(asap::BeamAxis); |
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153 | posDir(1) = 0; |
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154 | lonLat[0] = whichDir(posDir); |
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155 | // |
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156 | posDir(0) = pos(asap::BeamAxis); |
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157 | posDir(1) = 1; |
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158 | lonLat[1] = whichDir(posDir); |
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159 | |
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160 | // Write preamble |
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161 | |
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162 | of << iRow << " " << pos(asap::BeamAxis) << " " << pos(asap::IFAxis) << " " << |
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163 | pos(asap::PolAxis) << " " << |
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164 | src(iRow) << " " << formatDirection(lonLat) << " " << |
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165 | sdTable.getTime(iRow,True) << " " << n << " "; |
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166 | |
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167 | // Write abcissa |
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168 | |
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169 | of.setf(ios::fixed, ios::floatfield); |
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170 | of.precision(4); |
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171 | for (uInt i=0; i<n; i++) { |
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172 | of << abcissa[i] << " "; |
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173 | } |
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174 | |
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175 | // Write data |
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176 | |
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177 | const Vector<Float>& data = itData.vector(); |
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178 | const Vector<Bool>& mask = itMask.vector(); |
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179 | for (uInt i=0; i<n; i++) { |
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180 | of << data[i] << " "; |
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181 | } |
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182 | // Write mask |
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183 | |
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184 | for (uInt i=0; i<n; i++) { |
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185 | of << mask[i] << " "; |
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186 | } |
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187 | of << endl; |
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188 | |
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189 | // Next spectrum |
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190 | |
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191 | itData.next(); |
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192 | itMask.next(); |
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193 | } |
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194 | } |
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195 | // |
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196 | of.close(); |
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197 | cout << "Wrote " << nRows << " rows into file " << fileName << endl; |
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198 | // |
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199 | return True; |
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200 | } |
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201 | |
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202 | |
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203 | |
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204 | String SDAsciiWriter::formatDirection(const Vector<Double>& lonLat) |
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205 | { |
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206 | MVAngle x1(lonLat(0)); |
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207 | String s1 = x1.string(MVAngle::TIME, 12); |
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208 | // |
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209 | MVAngle x2(lonLat(1)); |
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210 | String s2 = x2.string(MVAngle::ANGLE, 12); |
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211 | // |
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212 | String ss = s1 + String(" ") + s2; |
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213 | return ss; |
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214 | } |
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215 | |
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