1 | // C++ Interface: STSideBandSep |
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2 | // |
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3 | // Description: |
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4 | // A class to invoke sideband separation of Scantable |
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5 | // |
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6 | // Author: Kana Sugimoto <kana.sugi@nao.ac.jp>, (C) 2012 |
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7 | // |
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8 | // Copyright: See COPYING file that comes with this distribution |
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9 | // |
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10 | // |
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11 | |
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12 | // STL |
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13 | #include <ctype.h> |
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14 | |
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15 | // cascore |
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16 | #include <casa/OS/File.h> |
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17 | #include <casa/Logging/LogIO.h> |
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18 | #include <casa/Quanta/QuantumHolder.h> |
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19 | |
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20 | #include <measures/Measures/MFrequency.h> |
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21 | #include <measures/Measures/MCFrequency.h> |
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22 | |
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23 | #include <tables/Tables/TableRow.h> |
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24 | #include <tables/Tables/TableRecord.h> |
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25 | #include <tables/Tables/TableVector.h> |
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26 | |
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27 | // asap |
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28 | #include "STGrid.h" |
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29 | #include "STMath.h" |
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30 | #include "MathUtils.h" |
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31 | #include "STSideBandSep.h" |
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32 | |
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33 | using namespace std ; |
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34 | using namespace casa ; |
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35 | using namespace asap ; |
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36 | |
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37 | // #ifndef KS_DEBUG |
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38 | // #define KS_DEBUG |
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39 | // #endif |
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40 | |
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41 | namespace asap { |
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42 | |
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43 | // constructors |
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44 | STSideBandSep::STSideBandSep(const vector<string> &names) |
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45 | { |
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46 | LogIO os(LogOrigin("STSideBandSep","STSideBandSep()", WHERE)); |
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47 | os << "Setting scantable names to process." << LogIO::POST ; |
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48 | // Set file names |
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49 | ntable_ = names.size(); |
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50 | infileList_.resize(ntable_); |
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51 | for (unsigned int i = 0; i < ntable_; i++){ |
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52 | if (!checkFile(names[i], "d")) |
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53 | throw( AipsError("File does not exist") ); |
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54 | infileList_[i] = names[i]; |
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55 | } |
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56 | intabList_.resize(0); |
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57 | |
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58 | init(); |
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59 | |
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60 | {// Summary |
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61 | os << ntable_ << " files are set: ["; |
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62 | for (unsigned int i = 0; i < ntable_; i++) { |
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63 | os << " '" << infileList_[i] << "' "; |
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64 | if (i != ntable_-1) os << ","; |
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65 | } |
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66 | os << "] " << LogIO::POST; |
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67 | } |
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68 | }; |
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69 | |
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70 | STSideBandSep::STSideBandSep(const vector<ScantableWrapper> &tables) |
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71 | { |
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72 | LogIO os(LogOrigin("STSideBandSep","STSideBandSep()", WHERE)); |
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73 | os << "Setting list of scantables to process." << LogIO::POST ; |
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74 | // Set file names |
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75 | ntable_ = tables.size(); |
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76 | intabList_.resize(ntable_); |
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77 | for (unsigned int i = 0; i < ntable_; i++){ |
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78 | intabList_[i] = tables[i].getCP(); |
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79 | } |
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80 | infileList_.resize(0); |
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81 | |
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82 | init(); |
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83 | tp_ = intabList_[0]->table().tableType(); |
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84 | |
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85 | os << ntable_ << " tables are set." << LogIO::POST; |
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86 | }; |
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87 | |
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88 | STSideBandSep::~STSideBandSep() |
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89 | { |
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90 | #ifdef KS_DEBUG |
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91 | cout << "Destructor ~STSideBandSep()" << endl; |
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92 | #endif |
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93 | }; |
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94 | |
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95 | void STSideBandSep::init() |
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96 | { |
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97 | // frequency setup |
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98 | sigIfno_= -1; |
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99 | ftol_ = -1; |
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100 | solFrame_ = MFrequency::N_Types; |
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101 | // shifts |
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102 | initshift(); |
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103 | // direction tolerance |
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104 | xtol_ = ytol_ = 9.69627e-6; // 2arcsec |
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105 | // solution parameters |
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106 | otherside_ = false; |
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107 | doboth_ = false; |
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108 | rejlimit_ = 0.2; |
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109 | // LO1 values |
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110 | lo1Freq_ = -1; |
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111 | loTime_ = -1; |
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112 | loDir_ = ""; |
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113 | // Default LO frame is TOPO |
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114 | loFrame_ = MFrequency::TOPO; |
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115 | // scantable storage |
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116 | tp_ = Table::Memory; |
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117 | }; |
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118 | |
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119 | void STSideBandSep::initshift() |
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120 | { |
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121 | // shifts |
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122 | nshift_ = 0; |
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123 | nchan_ = 0; |
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124 | sigShift_.resize(0); |
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125 | imgShift_.resize(0); |
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126 | tableList_.resize(0); |
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127 | }; |
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128 | |
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129 | void STSideBandSep::setFrequency(const unsigned int ifno, |
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130 | const string freqtol, |
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131 | const string frame) |
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132 | { |
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133 | LogIO os(LogOrigin("STSideBandSep","setFrequency()", WHERE)); |
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134 | |
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135 | initshift(); |
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136 | |
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137 | // IFNO |
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138 | sigIfno_ = (int) ifno; |
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139 | |
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140 | // Frequency tolerance |
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141 | Quantum<Double> qftol; |
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142 | readQuantity(qftol, String(freqtol)); |
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143 | if (!qftol.getUnit().empty()){ |
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144 | // make sure the quantity is frequency |
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145 | if (qftol.getFullUnit().getValue() != Unit("Hz").getValue()) |
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146 | throw( AipsError("Invalid quantity for frequency tolerance.") ); |
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147 | qftol.convert("Hz"); |
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148 | } |
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149 | ftol_ = qftol; |
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150 | |
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151 | // Frequency Frame |
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152 | if (!frame.empty()){ |
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153 | MFrequency::Types mft; |
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154 | if (!MFrequency::getType(mft, frame)) |
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155 | throw( AipsError("Invalid frame type.") ); |
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156 | solFrame_ = mft; |
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157 | } else { |
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158 | solFrame_ = MFrequency::N_Types; |
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159 | } |
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160 | |
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161 | {// Summary |
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162 | const String sframe = ( (solFrame_ == MFrequency::N_Types) ? |
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163 | "table frame" : |
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164 | MFrequency::showType(solFrame_) ); |
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165 | os << "Frequency setup to search IF group: " |
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166 | << "IFNO of table[0] = " << sigIfno_ |
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167 | << " , Freq tolerance = " << ftol_.getValue() << " [ " |
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168 | << (ftol_.getUnit().empty() ? "channel" : ftol_.getUnit() ) |
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169 | << " ] (in " << sframe <<")" << LogIO::POST; |
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170 | } |
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171 | }; |
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172 | |
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173 | |
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174 | void STSideBandSep::setDirTolerance(const vector<string> dirtol) |
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175 | { |
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176 | LogIO os(LogOrigin("STSideBandSep","setDirTolerance()", WHERE)); |
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177 | Quantum<Double> qcell; |
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178 | if ( (dirtol.size() == 1) && !dirtol[0].empty() ) { |
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179 | readQuantity(qcell, String(dirtol[0])); |
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180 | if (qcell.getFullUnit().getValue() == Unit("rad").getValue()) |
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181 | xtol_ = ytol_ = qcell.getValue("rad"); |
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182 | else |
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183 | throw( AipsError("Invalid unit for direction tolerance.") ); |
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184 | } |
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185 | else if (dirtol.size() > 1) { |
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186 | if ( dirtol[0].empty() && dirtol[1].empty() ) |
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187 | throw( AipsError("Direction tolerance is empty.") ); |
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188 | if ( !dirtol[0].empty() ) { |
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189 | readQuantity(qcell, String(dirtol[0])); |
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190 | if (qcell.getFullUnit().getValue() == Unit("rad").getValue()) |
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191 | xtol_ = qcell.getValue("rad"); |
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192 | else |
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193 | throw( AipsError("Invalid unit for direction tolerance.") ); |
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194 | } |
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195 | if ( !dirtol[1].empty() ) { |
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196 | readQuantity(qcell, String(dirtol[1])); |
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197 | if (qcell.getFullUnit().getValue() == Unit("rad").getValue()) |
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198 | ytol_ = qcell.getValue("rad"); |
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199 | else |
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200 | throw( AipsError("Invalid unit for direction tolerance.") ); |
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201 | } |
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202 | else { |
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203 | ytol_ = xtol_; |
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204 | } |
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205 | } |
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206 | else throw( AipsError("Invalid direction tolerance.") ); |
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207 | |
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208 | os << "Direction tolerance: ( " |
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209 | << xtol_ << " , " << ytol_ << " ) [rad]" << LogIO::POST; |
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210 | }; |
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211 | |
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212 | void STSideBandSep::setShift(const vector<double> &shift) |
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213 | { |
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214 | LogIO os(LogOrigin("STSideBandSep","setShift()", WHERE)); |
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215 | imgShift_.resize(shift.size()); |
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216 | for (unsigned int i = 0; i < shift.size(); i++) |
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217 | imgShift_[i] = shift[i]; |
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218 | |
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219 | if (imgShift_.size() == 0) { |
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220 | os << "Channel shifts are cleared." << LogIO::POST; |
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221 | } else { |
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222 | os << "Channel shifts of image sideband are set: ( "; |
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223 | for (unsigned int i = 0; i < imgShift_.size(); i++) { |
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224 | os << imgShift_[i]; |
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225 | if (i != imgShift_.size()-1) os << " , "; |
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226 | } |
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227 | os << " ) [channels]" << LogIO::POST; |
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228 | } |
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229 | }; |
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230 | |
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231 | void STSideBandSep::setThreshold(const double limit) |
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232 | { |
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233 | LogIO os(LogOrigin("STSideBandSep","setThreshold()", WHERE)); |
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234 | if (limit < 0) |
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235 | throw( AipsError("Rejection limit should be a positive number.") ); |
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236 | |
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237 | rejlimit_ = limit; |
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238 | os << "Rejection limit is set to " << rejlimit_ << LogIO::POST; |
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239 | }; |
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240 | |
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241 | void STSideBandSep::separate(string outname) |
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242 | { |
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243 | #ifdef KS_DEBUG |
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244 | cout << "STSideBandSep::separate" << endl; |
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245 | #endif |
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246 | LogIO os(LogOrigin("STSideBandSep","separate()", WHERE)); |
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247 | if (outname.empty()) |
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248 | outname = "sbseparated.asap"; |
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249 | |
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250 | // Set up a goup of IFNOs in the list of scantables within |
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251 | // the frequency tolerance and make them a list. |
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252 | nshift_ = setupShift(); |
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253 | if (nshift_ < 2) |
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254 | throw( AipsError("At least 2 IFs are necessary for convolution.") ); |
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255 | // Grid scantable and generate output tables |
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256 | ScantableWrapper gridst = gridTable(); |
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257 | sigTab_p = gridst.getCP(); |
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258 | if (doboth_) |
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259 | imgTab_p = gridst.copy().getCP(); |
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260 | vector<unsigned int> remRowIds; |
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261 | remRowIds.resize(0); |
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262 | Matrix<float> specMat(nchan_, nshift_); |
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263 | vector<float> sigSpec(nchan_), imgSpec(nchan_); |
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264 | vector<uInt> tabIdvec; |
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265 | |
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266 | //Generate FFTServer |
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267 | fftsf.resize(IPosition(1, nchan_), FFTEnums::REALTOCOMPLEX); |
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268 | fftsi.resize(IPosition(1, nchan_), FFTEnums::COMPLEXTOREAL); |
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269 | |
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270 | /// Loop over sigTab_p and separate sideband |
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271 | for (int irow = 0; irow < sigTab_p->nrow(); irow++){ |
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272 | tabIdvec.resize(0); |
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273 | const int polId = sigTab_p->getPol(irow); |
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274 | const int beamId = sigTab_p->getBeam(irow); |
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275 | const vector<double> dir = sigTab_p->getDirectionVector(irow); |
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276 | // Get a set of spectra to solve |
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277 | if (!getSpectraToSolve(polId, beamId, dir[0], dir[1], |
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278 | specMat, tabIdvec)){ |
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279 | remRowIds.push_back(irow); |
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280 | #ifdef KS_DEBUG |
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281 | cout << "no matching row found. skipping row = " << irow << endl; |
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282 | #endif |
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283 | continue; |
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284 | } |
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285 | // Solve signal sideband |
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286 | sigSpec = solve(specMat, tabIdvec, true); |
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287 | sigTab_p->setSpectrum(sigSpec, irow); |
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288 | |
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289 | // Solve image sideband |
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290 | if (doboth_) { |
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291 | imgSpec = solve(specMat, tabIdvec, false); |
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292 | imgTab_p->setSpectrum(imgSpec, irow); |
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293 | } |
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294 | } // end of row loop |
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295 | |
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296 | // Remove or flag rows without relevant data from gridded tables |
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297 | if (remRowIds.size() > 0) { |
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298 | const size_t nrem = remRowIds.size(); |
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299 | if ( sigTab_p->table().canRemoveRow() ) { |
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300 | sigTab_p->table().removeRow(remRowIds); |
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301 | os << "Removing " << nrem << " rows from the signal band table" |
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302 | << LogIO::POST; |
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303 | } else { |
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304 | sigTab_p->flagRow(remRowIds, false); |
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305 | os << "Cannot remove rows from the signal band table. Flagging " |
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306 | << nrem << " rows" << LogIO::POST; |
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307 | } |
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308 | |
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309 | if (doboth_) { |
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310 | if ( imgTab_p->table().canRemoveRow() ) { |
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311 | imgTab_p->table().removeRow(remRowIds); |
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312 | os << "Removing " << nrem << " rows from the image band table" |
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313 | << LogIO::POST; |
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314 | } else { |
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315 | imgTab_p->flagRow(remRowIds, false); |
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316 | os << "Cannot remove rows from the image band table. Flagging " |
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317 | << nrem << " rows" << LogIO::POST; |
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318 | } |
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319 | } |
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320 | } |
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321 | |
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322 | // Finally, save tables on disk |
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323 | if (outname.size() ==0) |
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324 | outname = "sbseparated.asap"; |
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325 | const string sigName = outname + ".signalband"; |
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326 | os << "Saving SIGNAL sideband table: " << sigName << LogIO::POST; |
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327 | sigTab_p->makePersistent(sigName); |
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328 | if (doboth_) { |
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329 | solveImageFrequency(); |
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330 | const string imgName = outname + ".imageband"; |
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331 | os << "Saving IMAGE sideband table: " << sigName << LogIO::POST; |
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332 | imgTab_p->makePersistent(imgName); |
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333 | } |
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334 | |
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335 | }; |
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336 | |
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337 | unsigned int STSideBandSep::setupShift() |
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338 | { |
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339 | LogIO os(LogOrigin("STSideBandSep","setupShift()", WHERE)); |
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340 | if (infileList_.size() == 0 && intabList_.size() == 0) |
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341 | throw( AipsError("No scantable has been set. Set a list of scantables first.") ); |
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342 | |
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343 | const bool byname = (intabList_.size() == 0); |
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344 | // Make sure sigIfno_ exists in the first table. |
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345 | CountedPtr<Scantable> stab; |
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346 | vector<string> coordsav; |
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347 | vector<string> coordtmp(3); |
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348 | os << "Checking IFNO in the first table." << LogIO::POST; |
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349 | if (byname) { |
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350 | if (!checkFile(infileList_[0], "d")) |
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351 | os << LogIO::SEVERE << "Could not find scantable '" << infileList_[0] |
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352 | << "'" << LogIO::EXCEPTION; |
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353 | stab = CountedPtr<Scantable>(new Scantable(infileList_[0])); |
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354 | } else { |
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355 | stab = intabList_[0]; |
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356 | } |
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357 | if (sigIfno_ < 0) { |
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358 | sigIfno_ = (int) stab->getIF(0); |
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359 | os << "IFNO to process has not been set. Using the first IF = " |
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360 | << sigIfno_ << LogIO::POST; |
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361 | } |
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362 | |
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363 | unsigned int basench; |
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364 | double basech0, baseinc, ftolval, inctolval; |
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365 | coordsav = stab->getCoordInfo(); |
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366 | const string stfframe = coordsav[1]; |
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367 | coordtmp[0] = "Hz"; |
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368 | coordtmp[1] = ( (solFrame_ == MFrequency::N_Types) ? |
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369 | stfframe : |
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370 | MFrequency::showType(solFrame_) ); |
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371 | coordtmp[2] = coordsav[2]; |
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372 | stab->setCoordInfo(coordtmp); |
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373 | if (!getFreqInfo(stab, (unsigned int) sigIfno_, basech0, baseinc, basench)) { |
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374 | os << LogIO::SEVERE << "No data with IFNO=" << sigIfno_ |
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375 | << " found in the first table." << LogIO::EXCEPTION; |
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376 | } |
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377 | else { |
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378 | os << "Found IFNO = " << sigIfno_ |
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379 | << " in the first table." << LogIO::POST; |
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380 | } |
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381 | if (ftol_.getUnit().empty()) { |
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382 | // tolerance in unit of channels |
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383 | ftolval = ftol_.getValue() * baseinc; |
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384 | } |
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385 | else { |
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386 | ftolval = ftol_.getValue("Hz"); |
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387 | } |
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388 | inctolval = abs(baseinc/(double) basench); |
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389 | const string poltype0 = stab->getPolType(); |
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390 | |
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391 | // Initialize shift values |
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392 | initshift(); |
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393 | |
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394 | const bool setImg = ( doboth_ && (imgShift_.size() == 0) ); |
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395 | // Select IFs |
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396 | for (unsigned int itab = 0; itab < ntable_; itab++ ){ |
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397 | os << "Table " << itab << LogIO::POST; |
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398 | if (itab > 0) { |
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399 | if (byname) { |
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400 | if (!checkFile(infileList_[itab], "d")) |
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401 | os << LogIO::SEVERE << "Could not find scantable '" |
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402 | << infileList_[itab] << "'" << LogIO::EXCEPTION; |
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403 | stab = CountedPtr<Scantable>(new Scantable(infileList_[itab])); |
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404 | } else { |
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405 | stab = intabList_[itab]; |
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406 | } |
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407 | //POLTYPE should be the same. |
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408 | if (stab->getPolType() != poltype0 ) { |
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409 | os << LogIO::WARN << "POLTYPE differs from the first table." |
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410 | << " Skipping the table" << LogIO::POST; |
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411 | continue; |
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412 | } |
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413 | // Multi beam data may not handled properly |
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414 | if (stab->nbeam() > 1) |
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415 | os << LogIO::WARN << "Table contains multiple beams. " |
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416 | << "It may not be handled properly." << LogIO::POST; |
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417 | |
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418 | coordsav = stab->getCoordInfo(); |
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419 | coordtmp[2] = coordsav[2]; |
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420 | stab->setCoordInfo(coordtmp); |
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421 | } |
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422 | bool selected = false; |
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423 | vector<uint> ifnos = stab->getIFNos(); |
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424 | vector<uint>::iterator iter; |
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425 | const STSelector& basesel = stab->getSelection(); |
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426 | for (iter = ifnos.begin(); iter != ifnos.end(); iter++){ |
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427 | unsigned int nch; |
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428 | double freq0, incr; |
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429 | if ( getFreqInfo(stab, *iter, freq0, incr, nch) ){ |
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430 | if ( (nch == basench) && (abs(freq0-basech0) < ftolval) |
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431 | && (abs(incr-baseinc) < inctolval) ){ |
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432 | //Found |
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433 | STSelector sel(basesel); |
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434 | sel.setIFs(vector<int>(1,(int) *iter)); |
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435 | stab->setSelection(sel); |
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436 | CountedPtr<Scantable> seltab = ( new Scantable(*stab, false) ); |
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437 | stab->setSelection(basesel); |
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438 | seltab->setCoordInfo(coordsav); |
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439 | const double chShift = (freq0 - basech0) / baseinc; |
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440 | tableList_.push_back(seltab); |
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441 | sigShift_.push_back(-chShift); |
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442 | if (setImg) |
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443 | imgShift_.push_back(chShift); |
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444 | |
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445 | selected = true; |
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446 | os << "- IF" << *iter << " selected: sideband shift = " |
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447 | << chShift << " channels" << LogIO::POST; |
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448 | } |
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449 | } |
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450 | } // ifno loop |
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451 | stab->setCoordInfo(coordsav); |
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452 | if (!selected) |
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453 | os << LogIO::WARN << "No data selected in Table " |
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454 | << itab << LogIO::POST; |
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455 | } // table loop |
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456 | nchan_ = basench; |
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457 | |
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458 | os << "Total number of IFs selected = " << tableList_.size() |
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459 | << LogIO::POST; |
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460 | if ( setImg && (sigShift_.size() != imgShift_.size()) ){ |
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461 | os << LogIO::SEVERE |
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462 | << "User defined channel shift of image sideband has " |
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463 | << imgShift_.size() |
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464 | << " elements, while selected IFNOs are " << sigShift_.size() |
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465 | << "\nThe frequency tolerance (freqtol) may be too small." |
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466 | << LogIO::EXCEPTION; |
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467 | } |
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468 | |
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469 | return tableList_.size(); |
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470 | }; |
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471 | |
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472 | bool STSideBandSep::getFreqInfo(const CountedPtr<Scantable> &stab, |
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473 | const unsigned int &ifno, |
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474 | double &freq0, double &incr, |
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475 | unsigned int &nchan) |
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476 | { |
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477 | vector<uint> ifnos = stab->getIFNos(); |
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478 | bool found = false; |
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479 | vector<uint>::iterator iter; |
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480 | for (iter = ifnos.begin(); iter != ifnos.end(); iter++){ |
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481 | if (*iter == ifno) { |
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482 | found = true; |
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483 | break; |
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484 | } |
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485 | } |
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486 | if (!found) |
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487 | return false; |
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488 | |
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489 | const STSelector& basesel = stab->getSelection(); |
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490 | STSelector sel(basesel); |
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491 | sel.setIFs(vector<int>(1,(int) ifno)); |
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492 | stab->setSelection(sel); |
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493 | vector<double> freqs; |
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494 | freqs = stab->getAbcissa(0); |
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495 | freq0 = freqs[0]; |
---|
496 | incr = freqs[1] - freqs[0]; |
---|
497 | nchan = freqs.size(); |
---|
498 | stab->setSelection(basesel); |
---|
499 | return true; |
---|
500 | }; |
---|
501 | |
---|
502 | ScantableWrapper STSideBandSep::gridTable() |
---|
503 | { |
---|
504 | LogIO os(LogOrigin("STSideBandSep","gridTable()", WHERE)); |
---|
505 | if (tableList_.size() == 0) |
---|
506 | throw( AipsError("Internal error. No scantable has been set to grid.") ); |
---|
507 | Double xmin, xmax, ymin, ymax; |
---|
508 | mapExtent(tableList_, xmin, xmax, ymin, ymax); |
---|
509 | const Double centx = 0.5 * (xmin + xmax); |
---|
510 | const Double centy = 0.5 * (ymin + ymax); |
---|
511 | const int nx = max(1, (int) ceil( (xmax - xmin) * cos(centy) /xtol_ ) ); |
---|
512 | const int ny = max(1, (int) ceil( (ymax - ymin) / ytol_ ) ); |
---|
513 | |
---|
514 | string scellx, scelly; |
---|
515 | { |
---|
516 | ostringstream oss; |
---|
517 | oss << xtol_ << "rad" ; |
---|
518 | scellx = oss.str(); |
---|
519 | } |
---|
520 | { |
---|
521 | ostringstream oss; |
---|
522 | oss << ytol_ << "rad" ; |
---|
523 | scelly = oss.str(); |
---|
524 | } |
---|
525 | |
---|
526 | ScantableWrapper stab0; |
---|
527 | if (intabList_.size() > 0) |
---|
528 | stab0 = ScantableWrapper(intabList_[0]); |
---|
529 | else |
---|
530 | stab0 = ScantableWrapper(infileList_[0]); |
---|
531 | |
---|
532 | string scenter; |
---|
533 | { |
---|
534 | ostringstream oss; |
---|
535 | oss << stab0.getCP()->getDirectionRefString() << " " |
---|
536 | << centx << "rad" << " " << centy << "rad"; |
---|
537 | scenter = oss.str(); |
---|
538 | } |
---|
539 | |
---|
540 | STGrid2 gridder = STGrid2(stab0); |
---|
541 | gridder.setIF(sigIfno_); |
---|
542 | gridder.defineImage(nx, ny, scellx, scelly, scenter); |
---|
543 | gridder.setFunc("box", 1); |
---|
544 | gridder.setWeight("uniform"); |
---|
545 | #ifdef KS_DEBUG |
---|
546 | cout << "Grid parameter summary: " << endl; |
---|
547 | cout << "- IF = " << sigIfno_ << endl; |
---|
548 | cout << "- center = " << scenter << ")\n" |
---|
549 | << "- npix = (" << nx << ", " << ny << ")\n" |
---|
550 | << "- cell = (" << scellx << ", " << scelly << endl; |
---|
551 | #endif |
---|
552 | gridder.grid(); |
---|
553 | const int itp = (tp_ == Table::Memory ? 0 : 1); |
---|
554 | ScantableWrapper gtab = gridder.getResultAsScantable(itp); |
---|
555 | return gtab; |
---|
556 | }; |
---|
557 | |
---|
558 | void STSideBandSep::mapExtent(vector< CountedPtr<Scantable> > &tablist, |
---|
559 | Double &xmin, Double &xmax, |
---|
560 | Double &ymin, Double &ymax) |
---|
561 | { |
---|
562 | ROArrayColumn<Double> dirCol_; |
---|
563 | dirCol_.attach( tablist[0]->table(), "DIRECTION" ); |
---|
564 | Matrix<Double> direction = dirCol_.getColumn(); |
---|
565 | Vector<Double> ra( direction.row(0) ); |
---|
566 | mathutil::rotateRA(ra); |
---|
567 | minMax( xmin, xmax, ra ); |
---|
568 | minMax( ymin, ymax, direction.row(1) ); |
---|
569 | Double amin, amax, bmin, bmax; |
---|
570 | const uInt ntab = tablist.size(); |
---|
571 | for ( uInt i = 1 ; i < ntab ; i++ ) { |
---|
572 | dirCol_.attach( tablist[i]->table(), "DIRECTION" ); |
---|
573 | direction.assign( dirCol_.getColumn() ); |
---|
574 | ra.assign( direction.row(0) ); |
---|
575 | mathutil::rotateRA(ra); |
---|
576 | minMax( amin, amax, ra ); |
---|
577 | minMax( bmin, bmax, direction.row(1) ); |
---|
578 | xmin = min(xmin, amin); |
---|
579 | xmax = max(xmax, amax); |
---|
580 | ymin = min(ymin, bmin); |
---|
581 | ymax = max(ymax, bmax); |
---|
582 | } |
---|
583 | }; |
---|
584 | |
---|
585 | bool STSideBandSep::getSpectraToSolve(const int polId, const int beamId, |
---|
586 | const double dirX, const double dirY, |
---|
587 | Matrix<float> &specMat, vector<uInt> &tabIdvec) |
---|
588 | { |
---|
589 | LogIO os(LogOrigin("STSideBandSep","getSpectraToSolve()", WHERE)); |
---|
590 | |
---|
591 | tabIdvec.resize(0); |
---|
592 | specMat.resize(nchan_, nshift_); |
---|
593 | Vector<float> spec; |
---|
594 | uInt nspec = 0; |
---|
595 | STMath stm(false); // insitu has no effect for average. |
---|
596 | for (uInt itab = 0 ; itab < nshift_ ; itab++) { |
---|
597 | CountedPtr<Scantable> currtab_p = tableList_[itab]; |
---|
598 | // Selection by POLNO and BEAMNO |
---|
599 | const STSelector& basesel = currtab_p->getSelection(); |
---|
600 | STSelector sel(basesel); |
---|
601 | sel.setPolarizations(vector<int>(1, polId)); |
---|
602 | sel.setBeams(vector<int>(1, beamId)); |
---|
603 | try { |
---|
604 | currtab_p->setSelection(sel); |
---|
605 | } catch (...) { |
---|
606 | #ifdef KS_DEBUG |
---|
607 | cout << "Table " << itab << " - No spectrum found. skipping the table." |
---|
608 | << endl; |
---|
609 | #endif |
---|
610 | continue; |
---|
611 | } |
---|
612 | // Selection by direction; |
---|
613 | vector<int> selrow(0); |
---|
614 | vector<double> currDir(2, 0.); |
---|
615 | const int nselrow = currtab_p->nrow(); |
---|
616 | for (int irow = 0 ; irow < nselrow ; irow++) { |
---|
617 | currDir = currtab_p->getDirectionVector(irow); |
---|
618 | if ( (abs(currDir[0]-dirX) > xtol_) || |
---|
619 | (abs(currDir[1]-dirY) > ytol_) ) |
---|
620 | continue; |
---|
621 | // within direction tolerance |
---|
622 | selrow.push_back(irow); |
---|
623 | } // end of row loop |
---|
624 | |
---|
625 | if (selrow.size() < 1) { |
---|
626 | currtab_p->setSelection(basesel); |
---|
627 | |
---|
628 | #ifdef KS_DEBUG |
---|
629 | cout << "Table " << itab << " - No spectrum found. skipping the table." |
---|
630 | << endl; |
---|
631 | #endif |
---|
632 | |
---|
633 | continue; |
---|
634 | } |
---|
635 | |
---|
636 | // At least a spectrum is selected in this table |
---|
637 | CountedPtr<Scantable> seltab_p = ( new Scantable(*currtab_p, false) ); |
---|
638 | currtab_p->setSelection(basesel); |
---|
639 | STSelector sel2(seltab_p->getSelection()); |
---|
640 | sel2.setRows(selrow); |
---|
641 | seltab_p->setSelection(sel2); |
---|
642 | CountedPtr<Scantable> avetab_p; |
---|
643 | vector<bool> mask; |
---|
644 | if (seltab_p->nrow() > 1) { |
---|
645 | avetab_p = stm.average(vector< CountedPtr<Scantable> >(1, seltab_p), |
---|
646 | vector<bool>(), "TINTSYS", "NONE"); |
---|
647 | #ifdef KS_DEBUG |
---|
648 | cout << "Table " << itab << " - more than a spectrum is selected. averaging rows..." |
---|
649 | << endl; |
---|
650 | #endif |
---|
651 | if (avetab_p->nrow() > 1) |
---|
652 | throw( AipsError("Averaged table has more than a row. Somethigs went wrong.") ); |
---|
653 | } else { |
---|
654 | avetab_p = seltab_p; |
---|
655 | } |
---|
656 | spec.reference(specMat.column(nspec)); |
---|
657 | spec = avetab_p->getSpectrum(0); |
---|
658 | tabIdvec.push_back((uInt) itab); |
---|
659 | nspec++; |
---|
660 | } // end of table loop |
---|
661 | if (nspec != nshift_){ |
---|
662 | //shiftSpecmat.resize(nchan_, nspec, true); |
---|
663 | #ifdef KS_DEBUG |
---|
664 | cout << "Could not find corresponding rows in some tables." |
---|
665 | << endl; |
---|
666 | cout << "Number of spectra selected = " << nspec << endl; |
---|
667 | #endif |
---|
668 | } |
---|
669 | if (nspec < 2) { |
---|
670 | #ifdef KS_DEBUG |
---|
671 | cout << "At least 2 spectra are necessary for convolution" |
---|
672 | << endl; |
---|
673 | #endif |
---|
674 | return false; |
---|
675 | } |
---|
676 | return true; |
---|
677 | }; |
---|
678 | |
---|
679 | vector<float> STSideBandSep::solve(const Matrix<float> &specmat, |
---|
680 | const vector<uInt> &tabIdvec, |
---|
681 | const bool signal) |
---|
682 | { |
---|
683 | LogIO os(LogOrigin("STSideBandSep","solve()", WHERE)); |
---|
684 | if (tabIdvec.size() == 0) |
---|
685 | throw(AipsError("Internal error. Table index is not defined.")); |
---|
686 | if (specmat.ncolumn() != tabIdvec.size()) |
---|
687 | throw(AipsError("Internal error. The row number of input matrix is not conformant.")); |
---|
688 | if (specmat.nrow() != nchan_) |
---|
689 | throw(AipsError("Internal error. The channel size of input matrix is not conformant.")); |
---|
690 | |
---|
691 | |
---|
692 | #ifdef KS_DEBUG |
---|
693 | cout << "Solving " << (signal ? "SIGNAL" : "IMAGE") << " sideband." |
---|
694 | << endl; |
---|
695 | #endif |
---|
696 | |
---|
697 | const size_t nspec = tabIdvec.size(); |
---|
698 | vector<double> *thisShift, *otherShift; |
---|
699 | if (signal == otherside_) { |
---|
700 | // (solve signal && solveother = T) OR (solve image && solveother = F) |
---|
701 | thisShift = &imgShift_; |
---|
702 | otherShift = &sigShift_; |
---|
703 | #ifdef KS_DEBUG |
---|
704 | cout << "Image sideband will be deconvolved." << endl; |
---|
705 | #endif |
---|
706 | } else { |
---|
707 | // (solve signal && solveother = F) OR (solve image && solveother = T) |
---|
708 | thisShift = &sigShift_; |
---|
709 | otherShift = &imgShift_; |
---|
710 | #ifdef KS_DEBUG |
---|
711 | cout << "Signal sideband will be deconvolved." << endl; |
---|
712 | #endif |
---|
713 | } |
---|
714 | |
---|
715 | vector<double> spshift(nspec); |
---|
716 | Matrix<float> shiftSpecmat(nchan_, nspec, 0.); |
---|
717 | double tempshift; |
---|
718 | Vector<float> shiftspvec; |
---|
719 | for (uInt i = 0 ; i < nspec; i++) { |
---|
720 | spshift[i] = otherShift->at(i) - thisShift->at(i); |
---|
721 | tempshift = - thisShift->at(i); |
---|
722 | shiftspvec.reference(shiftSpecmat.column(i)); |
---|
723 | shiftSpectrum(specmat.column(i), tempshift, shiftspvec); |
---|
724 | } |
---|
725 | |
---|
726 | Matrix<float> convmat(nchan_, nspec*(nspec-1)/2, 0.); |
---|
727 | vector<float> thisvec(nchan_, 0.); |
---|
728 | |
---|
729 | float minval, maxval; |
---|
730 | minMax(minval, maxval, shiftSpecmat); |
---|
731 | #ifdef KS_DEBUG |
---|
732 | cout << "Max/Min of input Matrix = (max: " << maxval << ", min: " << minval << ")" << endl; |
---|
733 | #endif |
---|
734 | |
---|
735 | #ifdef KS_DEBUG |
---|
736 | cout << "starting deconvolution" << endl; |
---|
737 | #endif |
---|
738 | deconvolve(shiftSpecmat, spshift, rejlimit_, convmat); |
---|
739 | #ifdef KS_DEBUG |
---|
740 | cout << "finished deconvolution" << endl; |
---|
741 | #endif |
---|
742 | |
---|
743 | minMax(minval, maxval, convmat); |
---|
744 | #ifdef KS_DEBUG |
---|
745 | cout << "Max/Min of output Matrix = (max: " << maxval << ", min: " << minval << ")" << endl; |
---|
746 | #endif |
---|
747 | |
---|
748 | aggregateMat(convmat, thisvec); |
---|
749 | |
---|
750 | if (!otherside_) return thisvec; |
---|
751 | |
---|
752 | // subtract from the other side band. |
---|
753 | vector<float> othervec(nchan_, 0.); |
---|
754 | subtractFromOther(shiftSpecmat, thisvec, spshift, othervec); |
---|
755 | return othervec; |
---|
756 | }; |
---|
757 | |
---|
758 | |
---|
759 | void STSideBandSep::shiftSpectrum(const Vector<float> &invec, |
---|
760 | double shift, |
---|
761 | Vector<float> &outvec) |
---|
762 | { |
---|
763 | LogIO os(LogOrigin("STSideBandSep","shiftSpectrum()", WHERE)); |
---|
764 | if (invec.size() != nchan_) |
---|
765 | throw(AipsError("Internal error. The length of input vector differs from nchan_")); |
---|
766 | if (outvec.size() != nchan_) |
---|
767 | throw(AipsError("Internal error. The length of output vector differs from nchan_")); |
---|
768 | |
---|
769 | #ifdef KS_DEBUG |
---|
770 | cout << "Start shifting spectrum for " << shift << "channels" << endl; |
---|
771 | #endif |
---|
772 | |
---|
773 | // tweak shift to be in 0 ~ nchan_-1 |
---|
774 | if ( fabs(shift) > nchan_ ) shift = fmod(shift, nchan_); |
---|
775 | if (shift < 0.) shift += nchan_; |
---|
776 | double rweight = fmod(shift, 1.); |
---|
777 | if (rweight < 0.) rweight += 1.; |
---|
778 | double lweight = 1. - rweight; |
---|
779 | uInt lchan, rchan; |
---|
780 | |
---|
781 | outvec = 0; |
---|
782 | for (uInt i = 0 ; i < nchan_ ; i++) { |
---|
783 | lchan = uInt( floor( fmod( (i + shift), nchan_ ) ) ); |
---|
784 | if (lchan < 0.) lchan += nchan_; |
---|
785 | rchan = ( (lchan + 1) % nchan_ ); |
---|
786 | outvec(lchan) += invec(i) * lweight; |
---|
787 | outvec(rchan) += invec(i) * rweight; |
---|
788 | } |
---|
789 | }; |
---|
790 | |
---|
791 | void STSideBandSep::deconvolve(Matrix<float> &specmat, |
---|
792 | const vector<double> shiftvec, |
---|
793 | const double threshold, |
---|
794 | Matrix<float> &outmat) |
---|
795 | { |
---|
796 | LogIO os(LogOrigin("STSideBandSep","deconvolve()", WHERE)); |
---|
797 | if (specmat.nrow() != nchan_) |
---|
798 | throw(AipsError("Internal error. The length of input matrix differs from nchan_")); |
---|
799 | if (specmat.ncolumn() != shiftvec.size()) |
---|
800 | throw(AipsError("Internal error. The number of input shifts and spectrum differs.")); |
---|
801 | |
---|
802 | float minval, maxval; |
---|
803 | #ifdef KS_DEBUG |
---|
804 | minMax(minval, maxval, specmat); |
---|
805 | cout << "Max/Min of input Matrix = (max: " << maxval << ", min: " << minval << ")" << endl; |
---|
806 | #endif |
---|
807 | |
---|
808 | uInt ninsp = shiftvec.size(); |
---|
809 | outmat.resize(nchan_, ninsp*(ninsp-1)/2, 0.); |
---|
810 | Matrix<Complex> fftspmat(nchan_/2+1, ninsp, 0.); |
---|
811 | Vector<float> rvecref(nchan_, 0.); |
---|
812 | Vector<Complex> cvecref(nchan_/2+1, 0.); |
---|
813 | uInt icol = 0; |
---|
814 | unsigned int nreject = 0; |
---|
815 | |
---|
816 | #ifdef KS_DEBUG |
---|
817 | cout << "Starting initial FFT. The number of input spectra = " << ninsp << endl; |
---|
818 | cout << "out matrix has ncolumn = " << outmat.ncolumn() << endl; |
---|
819 | #endif |
---|
820 | |
---|
821 | for (uInt isp = 0 ; isp < ninsp ; isp++) { |
---|
822 | rvecref.reference( specmat.column(isp) ); |
---|
823 | cvecref.reference( fftspmat.column(isp) ); |
---|
824 | |
---|
825 | #ifdef KS_DEBUG |
---|
826 | minMax(minval, maxval, rvecref); |
---|
827 | cout << "Max/Min of inv FFTed Matrix = (max: " << maxval << ", min: " << minval << ")" << endl; |
---|
828 | #endif |
---|
829 | |
---|
830 | fftsf.fft0(cvecref, rvecref, true); |
---|
831 | |
---|
832 | #ifdef KS_DEBUG |
---|
833 | double maxr=cvecref[0].real(), minr=cvecref[0].real(), |
---|
834 | maxi=cvecref[0].imag(), mini=cvecref[0].imag(); |
---|
835 | for (uInt i = 1; i<cvecref.size();i++){ |
---|
836 | maxr = max(maxr, cvecref[i].real()); |
---|
837 | maxi = max(maxi, cvecref[i].imag()); |
---|
838 | minr = min(minr, cvecref[i].real()); |
---|
839 | mini = min(mini, cvecref[i].imag()); |
---|
840 | } |
---|
841 | cout << "Max/Min of inv FFTed Matrix (size=" << cvecref.size() << ") = (max: " << maxr << " + " << maxi << "j , min: " << minr << " + " << mini << "j)" << endl; |
---|
842 | #endif |
---|
843 | } |
---|
844 | |
---|
845 | //Liberate from reference |
---|
846 | rvecref.unique(); |
---|
847 | |
---|
848 | Vector<Complex> cspec(nchan_/2+1, 0.); |
---|
849 | const double PI = 6.0 * asin(0.5); |
---|
850 | const double nchani = 1. / (float) nchan_; |
---|
851 | const Complex trans(0., 1.); |
---|
852 | #ifdef KS_DEBUG |
---|
853 | cout << "starting actual deconvolution" << endl; |
---|
854 | #endif |
---|
855 | for (uInt j = 0 ; j < ninsp ; j++) { |
---|
856 | for (uInt k = j+1 ; k < ninsp ; k++) { |
---|
857 | const double dx = (shiftvec[k] - shiftvec[j]) * 2. * PI * nchani; |
---|
858 | |
---|
859 | #ifdef KS_DEBUG |
---|
860 | cout << "icol = " << icol << endl; |
---|
861 | #endif |
---|
862 | |
---|
863 | for (uInt ichan = 0 ; ichan < cspec.size() ; ichan++){ |
---|
864 | cspec[ichan] = ( fftspmat(ichan, j) + fftspmat(ichan, k) )*0.5; |
---|
865 | double phase = dx*ichan; |
---|
866 | if ( fabs( sin(phase) ) > threshold){ |
---|
867 | cspec[ichan] += ( fftspmat(ichan, j) - fftspmat(ichan, k) ) * 0.5 |
---|
868 | * trans * sin(phase) / ( 1. - cos(phase) ); |
---|
869 | } else { |
---|
870 | nreject++; |
---|
871 | } |
---|
872 | } // end of channel loop |
---|
873 | |
---|
874 | #ifdef KS_DEBUG |
---|
875 | cout << "done calculation of cspec" << endl; |
---|
876 | #endif |
---|
877 | |
---|
878 | Vector<Float> rspec; |
---|
879 | rspec.reference( outmat.column(icol) ); |
---|
880 | |
---|
881 | #ifdef KS_DEBUG |
---|
882 | cout << "Starting inverse FFT. icol = " << icol << endl; |
---|
883 | //cout << "- size of complex vector = " << cspec.size() << endl; |
---|
884 | double maxr=cspec[0].real(), minr=cspec[0].real(), |
---|
885 | maxi=cspec[0].imag(), mini=cspec[0].imag(); |
---|
886 | for (uInt i = 1; i<cspec.size();i++){ |
---|
887 | maxr = max(maxr, cspec[i].real()); |
---|
888 | maxi = max(maxi, cspec[i].imag()); |
---|
889 | minr = min(minr, cspec[i].real()); |
---|
890 | mini = min(mini, cspec[i].imag()); |
---|
891 | } |
---|
892 | cout << "Max/Min of conv vector (size=" << cspec.size() << ") = (max: " << maxr << " + " << maxi << "j , min: " << minr << " + " << mini << "j)" << endl; |
---|
893 | #endif |
---|
894 | |
---|
895 | fftsi.fft0(rspec, cspec, false); |
---|
896 | |
---|
897 | #ifdef KS_DEBUG |
---|
898 | //cout << "- size of inversed real vector = " << rspec.size() << endl; |
---|
899 | minMax(minval, maxval, rspec); |
---|
900 | cout << "Max/Min of inv FFTed Vector (size=" << rspec.size() << ") = (max: " << maxval << ", min: " << minval << ")" << endl; |
---|
901 | //cout << "Done inverse FFT. icol = " << icol << endl; |
---|
902 | #endif |
---|
903 | |
---|
904 | icol++; |
---|
905 | } |
---|
906 | } |
---|
907 | |
---|
908 | #ifdef KS_DEBUG |
---|
909 | minMax(minval, maxval, outmat); |
---|
910 | cout << "Max/Min of inv FFTed Matrix = (max: " << maxval << ", min: " << minval << ")" << endl; |
---|
911 | #endif |
---|
912 | |
---|
913 | os << "Threshold = " << threshold << ", Rejected channels = " << nreject << endl; |
---|
914 | }; |
---|
915 | |
---|
916 | //////////////////////////////////////////////////////////////////// |
---|
917 | // void STSideBandSep::cpprfft(std::vector<float> invec) |
---|
918 | // { |
---|
919 | // cout << "c++ method cpprfft" << endl; |
---|
920 | // const unsigned int len = invec.size(); |
---|
921 | // Vector<Complex> carr(len/2+1, 0.); |
---|
922 | // Vector<float> inarr = Vector<float>(invec); |
---|
923 | // Vector <float> outarr(len, 0.); |
---|
924 | // FFTServer<Float, Complex> fftsf, fftsi; |
---|
925 | // fftsf.resize(IPosition(1, len), FFTEnums::REALTOCOMPLEX); |
---|
926 | // fftsi.resize(IPosition(1, invec.size()), FFTEnums::COMPLEXTOREAL); |
---|
927 | // cout << "Input float array (length = " << len << "):" << endl; |
---|
928 | // for (uInt i = 0 ; i < len ; i++){ |
---|
929 | // cout << (i == 0 ? "( " : " ") << inarr[i] << (i == len-1 ? ")" : ","); |
---|
930 | // } |
---|
931 | // cout << endl; |
---|
932 | // cout << "R->C transform" << endl; |
---|
933 | // fftsf.fft0(carr, inarr, true); |
---|
934 | // cout << "FFTed complex array (length = " << carr.size() << "):" << endl; |
---|
935 | // for (uInt i = 0 ; i < carr.size() ; i++){ |
---|
936 | // cout << (i == 0 ? "( " : " ") << carr[i] << ( (i == carr.size()-1) ? ")" : "," ); |
---|
937 | // } |
---|
938 | // cout << endl; |
---|
939 | // cout << "C->R transform" << endl; |
---|
940 | // fftsi.fft0(outarr, carr, false); |
---|
941 | // cout << "invFFTed float array (length = " << outarr.size() << "):" << endl; |
---|
942 | // for (uInt i = 0 ; i < outarr.size() ; i++){ |
---|
943 | // cout << (i == 0 ? "( " : " ") << outarr[i] << ( (i == outarr.size()-1) ? ")" : "," ); |
---|
944 | // } |
---|
945 | // cout << endl; |
---|
946 | // }; |
---|
947 | //////////////////////////////////////////////////////////////////// |
---|
948 | |
---|
949 | |
---|
950 | void STSideBandSep::aggregateMat(Matrix<float> &inmat, |
---|
951 | vector<float> &outvec) |
---|
952 | { |
---|
953 | LogIO os(LogOrigin("STSideBandSep","aggregateMat()", WHERE)); |
---|
954 | if (inmat.nrow() != nchan_) |
---|
955 | throw(AipsError("Internal error. The row numbers of input matrix differs from nchan_")); |
---|
956 | // if (outvec.size() != nchan_) |
---|
957 | // throw(AipsError("Internal error. The size of output vector should be equal to nchan_")); |
---|
958 | |
---|
959 | os << "Averaging " << inmat.ncolumn() << " spectra in the input matrix." |
---|
960 | << LogIO::POST; |
---|
961 | |
---|
962 | const uInt nspec = inmat.ncolumn(); |
---|
963 | const double scale = 1./( (double) nspec ); |
---|
964 | // initialize values with 0 |
---|
965 | outvec.assign(nchan_, 0); |
---|
966 | for (uInt isp = 0 ; isp < nspec ; isp++) { |
---|
967 | for (uInt ich = 0 ; ich < nchan_ ; ich++) { |
---|
968 | outvec[ich] += inmat(ich, isp); |
---|
969 | } |
---|
970 | } |
---|
971 | |
---|
972 | vector<float>::iterator iter; |
---|
973 | for (iter = outvec.begin(); iter != outvec.end(); iter++){ |
---|
974 | *iter *= scale; |
---|
975 | } |
---|
976 | }; |
---|
977 | |
---|
978 | void STSideBandSep::subtractFromOther(const Matrix<float> &shiftmat, |
---|
979 | const vector<float> &invec, |
---|
980 | const vector<double> &shift, |
---|
981 | vector<float> &outvec) |
---|
982 | { |
---|
983 | LogIO os(LogOrigin("STSideBandSep","subtractFromOther()", WHERE)); |
---|
984 | if (shiftmat.nrow() != nchan_) |
---|
985 | throw(AipsError("Internal error. The row numbers of input matrix differs from nchan_")); |
---|
986 | if (invec.size() != nchan_) |
---|
987 | throw(AipsError("Internal error. The length of input vector should be nchan_")); |
---|
988 | if (shift.size() != shiftmat.ncolumn()) |
---|
989 | throw(AipsError("Internal error. The column numbers of input matrix != the number of elements in shift")); |
---|
990 | |
---|
991 | const uInt nspec = shiftmat.ncolumn(); |
---|
992 | Vector<float> subsp(nchan_, 0.), shiftsub; |
---|
993 | Matrix<float> submat(nchan_, nspec, 0.); |
---|
994 | vector<float>::iterator iter; |
---|
995 | for (uInt isp = 0 ; isp < nspec ; isp++) { |
---|
996 | for (uInt ich = 0; ich < nchan_ ; ich++) { |
---|
997 | subsp(ich) = shiftmat(ich, isp) - invec[ich]; |
---|
998 | } |
---|
999 | shiftsub.reference(submat.column(isp)); |
---|
1000 | shiftSpectrum(subsp, shift[isp], shiftsub); |
---|
1001 | } |
---|
1002 | |
---|
1003 | aggregateMat(submat, outvec); |
---|
1004 | }; |
---|
1005 | |
---|
1006 | |
---|
1007 | void STSideBandSep::setLO1(const string lo1, const string frame, |
---|
1008 | const double reftime, const string refdir) |
---|
1009 | { |
---|
1010 | Quantum<Double> qfreq; |
---|
1011 | readQuantity(qfreq, String(lo1)); |
---|
1012 | lo1Freq_ = qfreq.getValue("Hz"); |
---|
1013 | MFrequency::getType(loFrame_, frame); |
---|
1014 | loTime_ = reftime; |
---|
1015 | loDir_ = refdir; |
---|
1016 | |
---|
1017 | #ifdef KS_DEBUG |
---|
1018 | cout << "STSideBandSep::setLO1" << endl; |
---|
1019 | if (lo1Freq_ > 0.) |
---|
1020 | cout << "lo1 = " << lo1Freq_ << " [Hz] (" << frame << ")" << endl; |
---|
1021 | if (loTime_ > 0.) |
---|
1022 | cout << "ref time = " << loTime_ << " [day]" << endl; |
---|
1023 | if (!loDir_.empty()) |
---|
1024 | cout << "ref direction = " << loDir_ << " [day]" << endl; |
---|
1025 | #endif |
---|
1026 | }; |
---|
1027 | |
---|
1028 | void STSideBandSep::setLO1Root(string name) |
---|
1029 | { |
---|
1030 | LogIO os(LogOrigin("STSideBandSep","setLO1Root()", WHERE)); |
---|
1031 | os << "Searching for '" << name << "'..." << LogIO::POST; |
---|
1032 | // Check for existance of the file |
---|
1033 | if (!checkFile(name)) { |
---|
1034 | throw(AipsError("File does not exist")); |
---|
1035 | } |
---|
1036 | if (name[(name.size()-1)] == '/') |
---|
1037 | name = name.substr(0,(name.size()-2)); |
---|
1038 | |
---|
1039 | if (checkFile(name+"/Receiver.xml", "file") && |
---|
1040 | checkFile(name+"/SpectralWindow.xml", "file")){ |
---|
1041 | os << "Found '" << name << "/Receiver.xml' ... got an ASDM name." << LogIO::POST; |
---|
1042 | asdmName_ = name; |
---|
1043 | } else if (checkFile(name+"/ASDM_RECEIVER") && |
---|
1044 | checkFile(name+"/ASDM_SPECTRALWINDOW")){ |
---|
1045 | os << "Found '" << name << "/ASDM_RECEIVER' ... got a Table name." << LogIO::POST; |
---|
1046 | asisName_ = name; |
---|
1047 | } else { |
---|
1048 | throw(AipsError("Invalid file name. Set an MS or ASDM name.")); |
---|
1049 | } |
---|
1050 | |
---|
1051 | #ifdef KS_DEBUG |
---|
1052 | cout << "STSideBandSep::setLO1Root" << endl; |
---|
1053 | if (!asdmName_.empty()) |
---|
1054 | cout << "asdm name = " << asdmName_ << endl; |
---|
1055 | if (!asisName_.empty()) |
---|
1056 | cout << "MS name = " << asisName_ << endl; |
---|
1057 | #endif |
---|
1058 | }; |
---|
1059 | |
---|
1060 | |
---|
1061 | void STSideBandSep::solveImageFrequency() |
---|
1062 | { |
---|
1063 | LogIO os(LogOrigin("STSideBandSep","solveImageFreqency()", WHERE)); |
---|
1064 | os << "Start calculating frequencies of image side band" << LogIO::POST; |
---|
1065 | |
---|
1066 | if (imgTab_p.null()) |
---|
1067 | throw AipsError("STSideBandSep::solveImageFreqency - an image side band scantable should be set first"); |
---|
1068 | |
---|
1069 | // Convert frequency REFVAL to the value in frame of LO. |
---|
1070 | // The code assumes that imgTab_p has only an IF and only a FREQ_ID |
---|
1071 | // is associated to an IFNO |
---|
1072 | // TODO: More complete Procedure would be |
---|
1073 | // 1. Get freq IDs associated to sigIfno_ |
---|
1074 | // 2. Get freq information of the freq IDs |
---|
1075 | // 3. For each freqIDs, get freq infromation in TOPO and an LO1 |
---|
1076 | // frequency and calculate image band frequencies. |
---|
1077 | STFrequencies freqTab_ = imgTab_p->frequencies(); |
---|
1078 | // get the base frame of table |
---|
1079 | const MFrequency::Types tabframe = freqTab_.getFrame(true); |
---|
1080 | TableVector<uInt> freqIdVec( imgTab_p->table(), "FREQ_ID" ); |
---|
1081 | // assuming single freqID per IFNO |
---|
1082 | uInt freqid = freqIdVec(0); |
---|
1083 | int nChan = imgTab_p->nchan(imgTab_p->getIF(0)); |
---|
1084 | double refpix, refval, increment ; |
---|
1085 | freqTab_.getEntry(refpix, refval, increment, freqid); |
---|
1086 | //MFrequency sigrefval = MFrequency(MVFrequency(refval),tabframe); |
---|
1087 | // get freq infromation of sigIfno_ in loFrame_ |
---|
1088 | const MPosition mp = imgTab_p->getAntennaPosition(); |
---|
1089 | MEpoch me; |
---|
1090 | MDirection md; |
---|
1091 | if (loTime_ < 0.) |
---|
1092 | me = imgTab_p->getEpoch(-1); |
---|
1093 | else |
---|
1094 | me = MEpoch(MVEpoch(loTime_)); |
---|
1095 | if (loDir_.empty()) { |
---|
1096 | ArrayColumn<Double> srcdirCol_; |
---|
1097 | srcdirCol_.attach(imgTab_p->table(), "SRCDIRECTION"); |
---|
1098 | // Assuming J2000 and SRCDIRECTION in unit of rad |
---|
1099 | Quantum<Double> srcra = Quantum<Double>(srcdirCol_(0)(IPosition(1,0)), "rad"); |
---|
1100 | Quantum<Double> srcdec = Quantum<Double>(srcdirCol_(0)(IPosition(1,1)), "rad"); |
---|
1101 | md = MDirection(srcra, srcdec, MDirection::J2000); |
---|
1102 | //imgTab_p->getDirection(0); |
---|
1103 | } else { |
---|
1104 | // parse direction string |
---|
1105 | string::size_type pos0 = loDir_.find(" "); |
---|
1106 | |
---|
1107 | if (pos0 == string::npos) { |
---|
1108 | throw AipsError("bad string format in LO1 direction"); |
---|
1109 | } |
---|
1110 | string::size_type pos1 = loDir_.find(" ", pos0+1); |
---|
1111 | String sepoch, sra, sdec; |
---|
1112 | if (pos1 != string::npos) { |
---|
1113 | sepoch = loDir_.substr(0, pos0); |
---|
1114 | sra = loDir_.substr(pos0+1, pos1-pos0); |
---|
1115 | sdec = loDir_.substr(pos1+1); |
---|
1116 | } |
---|
1117 | MDirection::Types epoch; |
---|
1118 | MDirection::getType(epoch, sepoch); |
---|
1119 | QuantumHolder qh ; |
---|
1120 | String err ; |
---|
1121 | qh.fromString( err, sra); |
---|
1122 | Quantum<Double> ra = qh.asQuantumDouble() ; |
---|
1123 | qh.fromString( err, sdec ) ; |
---|
1124 | Quantum<Double> dec = qh.asQuantumDouble() ; |
---|
1125 | //md = MDirection(ra.getValue("rad"), dec.getValue("rad"),epoch); |
---|
1126 | md = MDirection(ra, dec, epoch); |
---|
1127 | } |
---|
1128 | MeasFrame mframe( me, mp, md ); |
---|
1129 | MFrequency::Convert tobframe(loFrame_, MFrequency::Ref(tabframe, mframe)); |
---|
1130 | MFrequency::Convert toloframe(tabframe, MFrequency::Ref(loFrame_, mframe)); |
---|
1131 | // Convert refval to loFrame_ |
---|
1132 | double sigrefval; |
---|
1133 | if (tabframe == loFrame_) |
---|
1134 | sigrefval = refval; |
---|
1135 | else |
---|
1136 | sigrefval = toloframe(Quantum<Double>(refval, "Hz")).get("Hz").getValue(); |
---|
1137 | |
---|
1138 | // Check for the availability of LO1 |
---|
1139 | if (lo1Freq_ > 0.) { |
---|
1140 | os << "Using user defined LO1 frequency." << LogIO::POST; |
---|
1141 | } else if (!asisName_.empty()) { |
---|
1142 | // MS name is set. |
---|
1143 | os << "Using user defined MS (asis): " << asisName_ << LogIO::POST; |
---|
1144 | if (!getLo1FromAsisTab(asisName_, sigrefval, refpix, increment, nChan)) { |
---|
1145 | throw AipsError("Failed to get LO1 frequency from MS"); |
---|
1146 | } |
---|
1147 | } else if (!asdmName_.empty()) { |
---|
1148 | // ASDM name is set. |
---|
1149 | os << "Using user defined ASDM: " << asdmName_ << LogIO::POST; |
---|
1150 | if (!getLo1FromAsdm(asdmName_, sigrefval, refpix, increment, nChan)) { |
---|
1151 | throw AipsError("Failed to get LO1 frequency from ASDM"); |
---|
1152 | } |
---|
1153 | } else { |
---|
1154 | // Try getting ASDM name from scantable header |
---|
1155 | os << "Try getting information from scantable header" << LogIO::POST; |
---|
1156 | if (!getLo1FromScanTab(tableList_[0], sigrefval, refpix, increment, nChan)) { |
---|
1157 | //throw AipsError("Failed to get LO1 frequency from asis table"); |
---|
1158 | os << LogIO::WARN << "Failed to get LO1 frequency using information in scantable." << LogIO::POST; |
---|
1159 | os << LogIO::WARN << "Could not fill frequency information of IMAGE sideband properly." << LogIO::POST; |
---|
1160 | os << LogIO::WARN << "Storing values of SIGNAL sideband in FREQUENCIES table" << LogIO::POST; |
---|
1161 | return; |
---|
1162 | } |
---|
1163 | } |
---|
1164 | |
---|
1165 | // LO1 should now be ready. |
---|
1166 | if (lo1Freq_ < 0.) |
---|
1167 | throw(AipsError("Got negative LO1 Frequency")); |
---|
1168 | |
---|
1169 | // Print summary |
---|
1170 | { |
---|
1171 | // LO1 |
---|
1172 | Vector<Double> dirvec = md.getAngle(Unit(String("rad"))).getValue(); |
---|
1173 | os << "[LO1 settings]" << LogIO::POST; |
---|
1174 | os << "- Frequency: " << lo1Freq_ << " [Hz] (" |
---|
1175 | << MFrequency::showType(loFrame_) << ")" << LogIO::POST; |
---|
1176 | os << "- Reference time: " << me.get(Unit(String("d"))).getValue() |
---|
1177 | << " [day]" << LogIO::POST; |
---|
1178 | os << "- Reference direction: [" << dirvec[0] << ", " << dirvec[1] |
---|
1179 | << "] (" << md.getRefString() << ") " << LogIO::POST; |
---|
1180 | |
---|
1181 | // signal sideband |
---|
1182 | os << "[Signal side band]" << LogIO::POST; |
---|
1183 | os << "- IFNO: " << imgTab_p->getIF(0) << " (FREQ_ID = " << freqid << ")" |
---|
1184 | << LogIO::POST; |
---|
1185 | os << "- Reference value: " << refval << " [Hz] (" |
---|
1186 | << MFrequency::showType(tabframe) << ") = " |
---|
1187 | << sigrefval << " [Hz] (" << MFrequency::showType(loFrame_) |
---|
1188 | << ")" << LogIO::POST; |
---|
1189 | os << "- Reference pixel: " << refpix << LogIO::POST; |
---|
1190 | os << "- Increment: " << increment << " [Hz]" << LogIO::POST; |
---|
1191 | } |
---|
1192 | |
---|
1193 | // Calculate image band incr and refval in loFrame_ |
---|
1194 | Double imgincr = -increment; |
---|
1195 | Double imgrefval = 2 * lo1Freq_ - sigrefval; |
---|
1196 | Double imgrefval_tab = imgrefval; |
---|
1197 | // Convert imgrefval back to table base frame |
---|
1198 | if (tabframe != loFrame_) |
---|
1199 | imgrefval = tobframe(Quantum<Double>(imgrefval, "Hz")).get("Hz").getValue(); |
---|
1200 | // Set new frequencies table |
---|
1201 | uInt fIDnew = freqTab_.addEntry(refpix, imgrefval, imgincr); |
---|
1202 | // Update FREQ_ID in table. |
---|
1203 | freqIdVec = fIDnew; |
---|
1204 | |
---|
1205 | // Print summary (Image sideband) |
---|
1206 | { |
---|
1207 | os << "[Image side band]" << LogIO::POST; |
---|
1208 | os << "- IFNO: " << imgTab_p->getIF(0) << " (FREQ_ID = " << freqIdVec(0) |
---|
1209 | << ")" << LogIO::POST; |
---|
1210 | os << "- Reference value: " << imgrefval << " [Hz] (" |
---|
1211 | << MFrequency::showType(tabframe) << ") = " |
---|
1212 | << imgrefval_tab << " [Hz] (" << MFrequency::showType(loFrame_) |
---|
1213 | << ")" << LogIO::POST; |
---|
1214 | os << "- Reference pixel: " << refpix << LogIO::POST; |
---|
1215 | os << "- Increment: " << imgincr << " [Hz]" << LogIO::POST; |
---|
1216 | } |
---|
1217 | }; |
---|
1218 | |
---|
1219 | Bool STSideBandSep::checkFile(const string name, string type) |
---|
1220 | { |
---|
1221 | File file(name); |
---|
1222 | if (!file.exists()){ |
---|
1223 | return false; |
---|
1224 | } else if (type.empty()) { |
---|
1225 | return true; |
---|
1226 | } else { |
---|
1227 | // Check for file type |
---|
1228 | switch (tolower(type[0])) { |
---|
1229 | case 'f': |
---|
1230 | return file.isRegular(True); |
---|
1231 | case 'd': |
---|
1232 | return file.isDirectory(True); |
---|
1233 | case 's': |
---|
1234 | return file.isSymLink(); |
---|
1235 | default: |
---|
1236 | throw AipsError("Invalid file type. Available types are 'file', 'directory', and 'symlink'."); |
---|
1237 | } |
---|
1238 | } |
---|
1239 | }; |
---|
1240 | |
---|
1241 | bool STSideBandSep::getLo1FromAsdm(const string asdmname, |
---|
1242 | const double refval, |
---|
1243 | const double refpix, |
---|
1244 | const double increment, |
---|
1245 | const int nChan) |
---|
1246 | { |
---|
1247 | // Check for relevant tables. |
---|
1248 | string spwname = asdmname + "/SpectralWindow.xml"; |
---|
1249 | string recname = asdmname + "/Receiver.xml"; |
---|
1250 | if (!checkFile(spwname) || !checkFile(recname)) { |
---|
1251 | throw(AipsError("Could not find subtables in ASDM")); |
---|
1252 | } |
---|
1253 | |
---|
1254 | return false; |
---|
1255 | |
---|
1256 | }; |
---|
1257 | |
---|
1258 | |
---|
1259 | bool STSideBandSep::getLo1FromScanTab(CountedPtr< Scantable > &scantab, |
---|
1260 | const double refval, |
---|
1261 | const double refpix, |
---|
1262 | const double increment, |
---|
1263 | const int nChan) |
---|
1264 | { |
---|
1265 | LogIO os(LogOrigin("STSideBandSep","getLo1FromScanTab()", WHERE)); |
---|
1266 | // Check for relevant tables. |
---|
1267 | const TableRecord &rec = scantab->table().keywordSet() ; |
---|
1268 | String spwname, recname; |
---|
1269 | if (rec.isDefined("ASDM_SPECTRALWINDOW") && rec.isDefined("ASDM_RECEIVER")){ |
---|
1270 | spwname = rec.asString("ASDM_SPECTRALWINDOW"); |
---|
1271 | recname = rec.asString("ASDM_RECEIVER"); |
---|
1272 | } |
---|
1273 | else { |
---|
1274 | // keywords are not there |
---|
1275 | os << LogIO::WARN |
---|
1276 | << "Could not find necessary table names in scantable header." |
---|
1277 | << LogIO::POST; |
---|
1278 | return false; |
---|
1279 | } |
---|
1280 | if (!checkFile(spwname,"directory") || !checkFile(recname,"directory")) { |
---|
1281 | throw(AipsError("Could not find relevant subtables in MS")); |
---|
1282 | } |
---|
1283 | // Get root MS name |
---|
1284 | string msname; |
---|
1285 | const String recsuff = "/ASDM_RECEIVER"; |
---|
1286 | String::size_type pos; |
---|
1287 | pos = recname.size()-recsuff.size(); |
---|
1288 | if (recname.substr(pos) == recsuff) |
---|
1289 | msname = recname.substr(0, pos); |
---|
1290 | else |
---|
1291 | throw(AipsError("Internal error in parsing table name from a scantable keyword.")); |
---|
1292 | |
---|
1293 | if (!checkFile(msname)) |
---|
1294 | throw(AipsError("Internal error in parsing MS name from a scantable keyword.")); |
---|
1295 | |
---|
1296 | return getLo1FromAsisTab(msname, refval, refpix, increment, nChan); |
---|
1297 | |
---|
1298 | }; |
---|
1299 | |
---|
1300 | bool STSideBandSep::getLo1FromAsisTab(const string msname, |
---|
1301 | const double refval, |
---|
1302 | const double refpix, |
---|
1303 | const double increment, |
---|
1304 | const int nChan) |
---|
1305 | { |
---|
1306 | LogIO os(LogOrigin("STSideBandSep","getLo1FromAsisTab()", WHERE)); |
---|
1307 | os << "Searching an LO1 frequency in '" << msname << "'" << LogIO::POST; |
---|
1308 | // Check for relevant tables. |
---|
1309 | const string spwname = msname + "/ASDM_SPECTRALWINDOW"; |
---|
1310 | const string recname = msname + "/ASDM_RECEIVER"; |
---|
1311 | if (!checkFile(spwname,"directory") || !checkFile(recname,"directory")) { |
---|
1312 | throw(AipsError("Could not find relevant tables in MS")); |
---|
1313 | } |
---|
1314 | |
---|
1315 | Table spwtab_ = Table(spwname); |
---|
1316 | String asdmSpw; |
---|
1317 | ROTableRow spwrow(spwtab_); |
---|
1318 | const Double rtol = 0.01; |
---|
1319 | for (uInt idx = 0; idx < spwtab_.nrow(); idx++){ |
---|
1320 | const TableRecord& rec = spwrow.get(idx); |
---|
1321 | // Compare nchan |
---|
1322 | if (rec.asInt("numChan") != (Int) nChan) |
---|
1323 | continue; |
---|
1324 | // Compare increment |
---|
1325 | Double asdminc; |
---|
1326 | Array<Double> incarr = rec.asArrayDouble("chanWidthArray"); |
---|
1327 | if (incarr.size() > 0) |
---|
1328 | asdminc = incarr(IPosition(1, (uInt) refpix)); |
---|
1329 | else |
---|
1330 | asdminc = rec.asDouble("chanWidth"); |
---|
1331 | if (abs(asdminc - abs(increment)) > rtol * abs(increment)) |
---|
1332 | continue; |
---|
1333 | // Compare refval |
---|
1334 | Double asdmrefv; |
---|
1335 | Array<Double> refvarr = rec.asArrayDouble("chanFreqArray"); |
---|
1336 | if (refvarr.size() > 0){ |
---|
1337 | const uInt iref = (uInt) refpix; |
---|
1338 | const Double ratio = refpix - (Double) iref; |
---|
1339 | asdmrefv = refvarr(IPosition(1, iref))*(1.-ratio) |
---|
1340 | + refvarr(IPosition(1,iref+1))*ratio; |
---|
1341 | } |
---|
1342 | else { |
---|
1343 | const Double ch0 = rec.asDouble("chanFreqStart"); |
---|
1344 | const Double chstep = rec.asDouble("chanFreqStep"); |
---|
1345 | asdmrefv = ch0 + chstep * refpix; |
---|
1346 | } |
---|
1347 | if (abs(asdmrefv - refval) < 0.5*abs(asdminc)){ |
---|
1348 | asdmSpw = rec.asString("spectralWindowId"); |
---|
1349 | break; |
---|
1350 | } |
---|
1351 | } |
---|
1352 | |
---|
1353 | if (asdmSpw.empty()){ |
---|
1354 | os << LogIO::WARN << "Could not find relevant SPW ID in " << spwname << LogIO::POST; |
---|
1355 | return false; |
---|
1356 | } |
---|
1357 | else { |
---|
1358 | os << asdmSpw << " in " << spwname |
---|
1359 | << " matches the freqeuncies of signal side band." << LogIO::POST; |
---|
1360 | } |
---|
1361 | |
---|
1362 | Table rectab_ = Table(recname); |
---|
1363 | ROTableRow recrow(rectab_); |
---|
1364 | for (uInt idx = 0; idx < rectab_.nrow(); idx++){ |
---|
1365 | const TableRecord& rec = recrow.get(idx); |
---|
1366 | if (rec.asString("spectralWindowId") == asdmSpw){ |
---|
1367 | const Array<Double> loarr = rec.asArrayDouble("freqLO"); |
---|
1368 | lo1Freq_ = loarr(IPosition(1,0)); |
---|
1369 | os << "Found LO1 Frequency in " << recname << ": " |
---|
1370 | << lo1Freq_ << " [Hz]" << LogIO::POST; |
---|
1371 | return true; |
---|
1372 | } |
---|
1373 | } |
---|
1374 | os << LogIO::WARN << "Could not find " << asdmSpw << " in " << recname |
---|
1375 | << LogIO::POST; |
---|
1376 | return false; |
---|
1377 | }; |
---|
1378 | |
---|
1379 | } //namespace asap |
---|