1 | // |
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2 | // C++ Interface: Scantable |
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3 | // |
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4 | // Description: |
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5 | // |
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6 | // |
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7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2006 |
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8 | // |
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9 | // Copyright: See COPYING file that comes with this distribution |
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10 | // |
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11 | // |
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12 | #ifndef ASAPSCANTABLEWRAPPER_H |
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13 | #define ASAPSCANTABLEWRAPPER_H |
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14 | |
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15 | #include <vector> |
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16 | #include <string> |
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17 | #include <casa/Arrays/Vector.h> |
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18 | |
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19 | #include "MathUtils.h" |
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20 | #include "STFit.h" |
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21 | #include "STFitEntry.h" |
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22 | #include "Scantable.h" |
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23 | #include "STCoordinate.h" |
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24 | |
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25 | namespace asap { |
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26 | /** |
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27 | * This class contains and wraps a CountedPtr<Scantable>, as the CountedPtr |
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28 | * class does not provide the dor operator which is need for references |
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29 | * in boost::python |
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30 | * see Scantable for interfce description |
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31 | * |
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32 | * @brief The main ASAP data container wrapper |
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33 | * @author Malte Marquarding |
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34 | * @date 2006-02-23 |
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35 | * @version 2.0a |
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36 | */ |
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37 | class ScantableWrapper { |
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38 | |
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39 | public: |
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40 | explicit ScantableWrapper( const std::string& name, |
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41 | int type=0) |
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42 | { |
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43 | casa::Table::TableType tp = casa::Table::Memory; |
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44 | if ( type == 1 ) tp = casa::Table::Plain; |
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45 | table_ = new Scantable(name, tp); |
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46 | } |
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47 | |
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48 | explicit ScantableWrapper(int type=0) |
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49 | { |
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50 | casa::Table::TableType tp = casa::Table::Memory; |
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51 | if ( type == 1) tp = casa::Table::Plain; |
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52 | table_= new Scantable(tp); |
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53 | } |
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54 | |
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55 | explicit ScantableWrapper(casa::CountedPtr<Scantable> cp) : table_(cp) {;} |
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56 | |
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57 | ScantableWrapper(const ScantableWrapper& mt) : |
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58 | table_(mt.getCP()) {;} |
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59 | |
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60 | void assign(const ScantableWrapper& mt) |
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61 | { table_= mt.getCP(); } |
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62 | |
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63 | ScantableWrapper copy() { |
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64 | return ScantableWrapper(new Scantable(*(this->getCP()), false)); |
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65 | } |
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66 | |
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67 | std::vector<float> getSpectrum( int whichrow=0, |
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68 | const std::string& poltype="" ) const { |
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69 | return table_->getSpectrum(whichrow, poltype); |
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70 | } |
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71 | // std::string getPolarizationLabel(bool linear, bool stokes, bool linPol, int polIdx) const { |
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72 | // Boost fails with 4 arguments. |
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73 | std::string getPolarizationLabel(int index, const std::string& ptype) const { |
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74 | return table_->getPolarizationLabel(index, ptype); |
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75 | } |
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76 | |
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77 | std::vector<double> getAbcissa(int whichrow=0) const |
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78 | { return table_->getAbcissa(whichrow); } |
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79 | |
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80 | std::string getAbcissaLabel(int whichrow=0) const |
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81 | { return table_->getAbcissaLabel(whichrow); } |
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82 | |
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83 | float getTsys(int whichrow=0) const |
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84 | { return table_->getTsys(whichrow); } |
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85 | |
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86 | //std::string getTime(int whichrow=0) const |
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87 | // { return table_->getTime(whichrow); } |
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88 | std::string getTime(int whichrow=0, int prec = 0) const |
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89 | { return table_->getTime(whichrow, true, casa::uInt(prec)); } |
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90 | |
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91 | double getIntTime(int whichrow=0) const |
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92 | { return table_->getIntTime(whichrow); } |
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93 | |
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94 | std::string getDirectionString(int whichrow=0) const |
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95 | { return table_->getDirectionString(whichrow); } |
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96 | |
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97 | std::string getFluxUnit() const { return table_->getFluxUnit(); } |
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98 | |
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99 | void setFluxUnit(const std::string& unit) { table_->setFluxUnit(unit); } |
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100 | |
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101 | void setInstrument(const std::string& name) {table_->setInstrument(name);} |
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102 | void setFeedType(const std::string& ftype) {table_->setFeedType(ftype);} |
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103 | |
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104 | std::vector<bool> getMask(int whichrow=0) const |
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105 | { return table_->getMask(whichrow); } |
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106 | |
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107 | /** |
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108 | void flag(const std::vector<bool>& msk=std::vector<bool>()) |
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109 | { table_->flag(msk); } |
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110 | **/ |
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111 | /** |
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112 | void flag(const std::vector<bool>& msk=std::vector<bool>(), bool unflag=false) |
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113 | { table_->flag(msk, unflag); } |
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114 | **/ |
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115 | void flag(int whichrow=-1, const std::vector<bool>& msk=std::vector<bool>(), bool unflag=false) |
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116 | { table_->flag(whichrow, msk, unflag); } |
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117 | |
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118 | void flagRow(const std::vector<casa::uInt>& rows=std::vector<casa::uInt>(), bool unflag=false) |
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119 | { table_->flagRow(rows, unflag); } |
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120 | |
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121 | bool getFlagRow(int whichrow=0) const |
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122 | { return table_->getFlagRow(whichrow); } |
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123 | |
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124 | void clip(const casa::Float uthres, const casa::Float dthres, bool clipoutside=true, bool unflag=false) |
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125 | { table_->clip(uthres, dthres, clipoutside, unflag); } |
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126 | |
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127 | std::vector<bool> getClipMask(int whichrow, const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag) const |
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128 | { return table_->getClipMask(whichrow, uthres, dthres, clipoutside, unflag); } |
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129 | |
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130 | std::string getSourceName(int whichrow=0) const |
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131 | { return table_->getSourceName(whichrow); } |
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132 | |
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133 | float getElevation(int whichrow=0) const |
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134 | { return table_->getElevation(whichrow); } |
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135 | |
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136 | float getAzimuth(int whichrow=0) const |
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137 | { return table_->getAzimuth(whichrow); } |
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138 | |
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139 | float getParAngle(int whichrow=0) const |
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140 | { return table_->getParAngle(whichrow); } |
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141 | |
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142 | |
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143 | void setSpectrum(std::vector<float> spectrum, int whichrow=0) |
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144 | { table_->setSpectrum(spectrum, whichrow); } |
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145 | |
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146 | std::vector<uint> getIFNos() { return table_->getIFNos(); } |
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147 | int getIF(int whichrow) const {return table_->getIF(whichrow);} |
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148 | std::vector<uint> getBeamNos() { return table_->getBeamNos(); } |
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149 | int getBeam(int whichrow) const {return table_->getBeam(whichrow);} |
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150 | std::vector<uint> getPolNos() { return table_->getPolNos(); } |
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151 | int getPol(int whichrow) const {return table_->getPol(whichrow);} |
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152 | int getCycle(int whichrow) const {return table_->getCycle(whichrow);} |
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153 | std::vector<uint> getScanNos() { return table_->getScanNos(); } |
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154 | int getScan(int whichrow) const {return table_->getScan(whichrow);} |
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155 | std::vector<uint> getMolNos() { return table_->getMolNos();} |
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156 | |
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157 | STSelector getSelection() const { return table_->getSelection(); } |
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158 | void setSelection(const STSelector& sts) |
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159 | { return table_->setSelection(sts);} |
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160 | |
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161 | std::string getPolType() const { return table_->getPolType(); } |
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162 | |
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163 | int nif(int scanno=-1) const {return table_->nif(scanno);} |
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164 | int nbeam(int scanno=-1) const {return table_->nbeam(scanno);} |
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165 | int npol(int scanno=-1) const {return table_->npol(scanno);} |
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166 | int nchan(int ifno=-1) const {return table_->nchan(ifno);} |
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167 | int nscan() const {return table_->nscan();} |
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168 | int nrow() const {return table_->nrow();} |
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169 | int ncycle(int scanno) const {return table_->ncycle(scanno);} |
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170 | |
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171 | void makePersistent(const std::string& fname) |
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172 | { table_->makePersistent(fname); } |
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173 | |
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174 | void setSourceType(int stype) |
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175 | { table_->setSourceType(stype); } |
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176 | |
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177 | void shift(int npix) |
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178 | { table_->shift(npix); } |
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179 | |
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180 | /** |
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181 | commented out by TT |
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182 | void setRestFrequencies(double rf, const std::string& name, |
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183 | const std::string& unit) |
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184 | { table_->setRestFrequencies(rf, name, unit); } |
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185 | **/ |
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186 | void setRestFrequencies(vector<double> rf, const vector<std::string>& name, |
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187 | const std::string& unit) |
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188 | { table_->setRestFrequencies(rf, name, unit); } |
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189 | |
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190 | /* |
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191 | void setRestFrequencies(const std::string& name) { |
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192 | table_->setRestFrequencies(name); |
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193 | } |
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194 | */ |
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195 | |
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196 | /* |
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197 | std::vector<double> getRestFrequencies() const |
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198 | { return table_->getRestFrequencies(); } |
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199 | */ |
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200 | std::vector<double> getRestFrequency(int id) const |
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201 | { return table_->getRestFrequency(id); } |
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202 | |
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203 | void setCoordInfo(std::vector<string> theinfo) { |
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204 | table_->setCoordInfo(theinfo); |
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205 | } |
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206 | std::vector<string> getCoordInfo() const { |
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207 | return table_->getCoordInfo(); |
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208 | } |
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209 | |
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210 | void setDirection(const std::string& refstr="") |
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211 | { table_->setDirectionRefString(refstr); } |
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212 | |
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213 | casa::CountedPtr<Scantable> getCP() const {return table_;} |
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214 | Scantable* getPtr() {return &(*table_);} |
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215 | |
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216 | std::string summary(bool verbose=false) const { |
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217 | return table_->summary(verbose); |
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218 | } |
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219 | |
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220 | std::string listHeader(bool verbose=false) const { |
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221 | return table_->headerSummary(verbose); |
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222 | } |
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223 | |
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224 | std::vector<std::string> getHistory()const |
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225 | { return table_->getHistory(); } |
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226 | |
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227 | void addHistory(const std::string& hist) |
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228 | { table_->addHistory(hist); } |
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229 | |
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230 | void addFit(const STFitEntry& fit, int row) |
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231 | { table_->addFit(fit, row); } |
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232 | |
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233 | STFitEntry getFit(int whichrow) const |
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234 | { return table_->getFit(whichrow); } |
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235 | |
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236 | void calculateAZEL() { table_->calculateAZEL(); } |
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237 | |
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238 | std::vector<std::string> columnNames() const |
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239 | { return table_->columnNames(); } |
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240 | |
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241 | std::string getAntennaName() const |
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242 | { return table_->getAntennaName(); } |
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243 | |
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244 | int checkScanInfo(const vector<int>& scanlist) const |
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245 | { return table_->checkScanInfo(scanlist); } |
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246 | |
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247 | std::vector<double> getDirectionVector(int whichrow) const |
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248 | { return table_->getDirectionVector(whichrow); } |
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249 | |
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250 | void parallactify(bool flag) |
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251 | { table_->parallactify(flag); } |
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252 | |
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253 | STCoordinate getCoordinate(int row) { |
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254 | return STCoordinate(table_->getSpectralCoordinate(row)); |
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255 | } |
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256 | |
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257 | std::vector<float> getWeather(int whichrow) const |
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258 | { return table_->getWeather(whichrow); } |
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259 | |
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260 | void reshapeSpectrum( int nmin, int nmax ) |
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261 | { table_->reshapeSpectrum( nmin, nmax ); } |
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262 | |
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263 | void polyBaseline(const std::vector<bool>& mask, int order, bool getresidual=true, bool outlog=false, const std::string& blfile="") |
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264 | { table_->polyBaseline(mask, order, getresidual, outlog, blfile); } |
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265 | |
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266 | void autoPolyBaseline(const std::vector<bool>& mask, int order, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, bool outlog=false, const std::string& blfile="") |
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267 | { table_->autoPolyBaseline(mask, order, edge, threshold, chan_avg_limit, getresidual, outlog, blfile); } |
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268 | |
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269 | void cubicSplineBaseline(const std::vector<bool>& mask, int npiece, float clipthresh, int clipniter, bool getresidual=true, bool outlog=false, const std::string& blfile="") |
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270 | { table_->cubicSplineBaseline(mask, npiece, clipthresh, clipniter, getresidual, outlog, blfile); } |
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271 | |
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272 | void autoCubicSplineBaseline(const std::vector<bool>& mask, int npiece, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, bool outlog=false, const std::string& blfile="") |
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273 | { table_->autoCubicSplineBaseline(mask, npiece, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, outlog, blfile); } |
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274 | |
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275 | void sinusoidBaseline(const std::vector<bool>& mask, const std::vector<int>& nwave, float maxwavelength, float clipthresh, int clipniter, bool getresidual=true, bool outlog=false, const std::string& blfile="") |
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276 | { table_->sinusoidBaseline(mask, nwave, maxwavelength, clipthresh, clipniter, getresidual, outlog, blfile); } |
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277 | |
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278 | void autoSinusoidBaseline(const std::vector<bool>& mask, const std::vector<int>& nwave, float maxwavelength, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, bool outlog=false, const std::string& blfile="") |
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279 | { table_->autoSinusoidBaseline(mask, nwave, maxwavelength, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, outlog, blfile); } |
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280 | |
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281 | float getRms(const std::vector<bool>& mask, int whichrow) |
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282 | { return table_->getRms(mask, whichrow); } |
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283 | |
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284 | std::string formatBaselineParams(const std::vector<float>& params, const std::vector<bool>& fixed, float rms, const std::string& masklist, int whichrow, bool verbose=false) |
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285 | { return table_->formatBaselineParams(params, fixed, rms, masklist, whichrow, verbose); } |
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286 | |
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287 | std::string formatPiecewiseBaselineParams(const std::vector<int>& ranges, const std::vector<float>& params, const std::vector<bool>& fixed, float rms, const std::string& masklist, int whichrow, bool verbose=false) |
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288 | { return table_->formatPiecewiseBaselineParams(ranges, params, fixed, rms, masklist, whichrow, verbose); } |
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289 | |
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290 | bool getFlagtraFast(int whichrow=0) const |
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291 | { return table_->getFlagtraFast(casa::uInt(whichrow)); } |
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292 | |
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293 | |
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294 | |
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295 | private: |
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296 | casa::CountedPtr<Scantable> table_; |
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297 | }; |
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298 | |
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299 | } // namespace |
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300 | #endif |
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301 | |
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