source: branches/parallel/src/FillerBase.cpp@ 2317

Last change on this file since 2317 was 2263, checked in by Takeshi Nakazato, 13 years ago

New Development: No

JIRA Issue: No

Ready for Test: No

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: List test programs

Put in Release Notes: Yes/No

Module(s): Module Names change impacts.

Description: Describe your changes here...

Tuning NROFiller.
Filler is about 6 times faster than before (~660sec->~110sec).
File size: 9.2 KB
Line 
1//
2// C++ Interface: FillerBase
3//
4// Description:
5//
6//
7// Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2010
8//
9// Copyright: See COPYING file that comes with this distribution
10//
11//
12
13#include <casa/Containers/RecordField.h>
14#include <tables/Tables/ExprNode.h>
15
16#include "FillerBase.h"
17
18using namespace casa;
19
20namespace asap {
21
22FillerBase::FillerBase(casa::CountedPtr<Scantable> stable) :
23 table_(stable)
24{
25 row_ = TableRow(table_->table());
26
27 mEntry_.resize( 0 ) ;
28 mIdx_.resize( 0 ) ;
29 fEntry_.resize( 0 ) ;
30 fIdx_.resize( 0 ) ;
31 wEntry_.resize( 0 ) ;
32 wIdx_.resize( 0 ) ;
33}
34
35void FillerBase::setHeader(const STHeader& header)
36{
37 table_->setHeader(header);
38}
39
40void FillerBase::setSpectrum(const Vector<Float>& spectrum,
41 const Vector<uChar>& flags,
42 const Vector<Float>& tsys)
43{
44 RecordFieldPtr< Array<Float> > specCol(row_.record(), "SPECTRA");
45 RecordFieldPtr< Array<uChar> > flagCol(row_.record(), "FLAGTRA");
46 RecordFieldPtr< Array<Float> > tsysCol(row_.record(), "TSYS");
47
48 //*specCol = spectrum;
49 //*flagCol = flags;
50 //*tsysCol = tsys;
51 specCol.define(spectrum);
52 flagCol.define(flags);
53 tsysCol.define(tsys);
54}
55
56void FillerBase::setFlagrow(uInt flag)
57{
58 RecordFieldPtr<uInt> flagrowCol(row_.record(), "FLAGROW");
59 *flagrowCol = flag;
60}
61
62void FillerBase::setOpacity(Float opacity)
63{
64 RecordFieldPtr<Float> tauCol(row_.record(), "OPACITY") ;
65 *tauCol = opacity ;
66}
67
68void FillerBase::setIndex(uInt scanno, uInt cycleno, uInt ifno, uInt polno,
69 uInt beamno)
70{
71 RecordFieldPtr<uInt> beamCol(row_.record(), "BEAMNO");
72 RecordFieldPtr<uInt> ifCol(row_.record(), "IFNO");
73 RecordFieldPtr<uInt> polCol(row_.record(), "POLNO");
74 RecordFieldPtr<uInt> cycleCol(row_.record(), "CYCLENO");
75 RecordFieldPtr<uInt> scanCol(row_.record(), "SCANNO");
76 *beamCol = beamno;
77 *cycleCol = cycleno;
78 *ifCol = ifno;
79 *polCol = polno;
80 *scanCol = scanno;
81}
82
83void FillerBase::setFrequency(Double refpix, Double refval,
84 Double incr)
85{
86 /// @todo this has to change when nchan isn't global anymore
87 uInt nEntry = fEntry_.size() ;
88 Int idx = -1 ;
89 Vector<Double> entry( 3 ) ;
90 entry[0] = refpix ;
91 entry[1] = refval ;
92 entry[2] = incr ;
93 for ( uInt i = 0 ; i < nEntry ; i++ ) {
94 if ( allEQ( entry, fEntry_[i] ) ) {
95 idx = i ;
96 break ;
97 }
98 }
99 uInt id ;
100 if ( idx != -1 )
101 id = fIdx_[idx] ;
102 else {
103 id= table_->frequencies().addEntry(refpix, refval, incr);
104 RecordFieldPtr<uInt> mfreqidCol(row_.record(), "FREQ_ID");
105 fEntry_.push_back( entry ) ;
106 fIdx_.push_back( id ) ;
107 }
108 RecordFieldPtr<uInt> mfreqidCol(row_.record(), "FREQ_ID");
109 *mfreqidCol = id;
110
111}
112
113
114void FillerBase::setMolecule(const Vector<Double>& restfreq)
115{
116 uInt nEntry = mEntry_.size() ;
117 Int idx = -1 ;
118 for ( uInt i = 0 ; i < nEntry ; i++ ) {
119 if ( restfreq.conform( mEntry_[i] ) ) {
120 if ( allEQ( restfreq, mEntry_[i] ) ) {
121 idx = i ;
122 break ;
123 }
124 }
125 }
126 uInt id ;
127 if ( idx != -1 )
128 id = mIdx_[idx] ;
129 else {
130 Vector<String> tmp ;
131 id = table_->molecules().addEntry(restfreq,tmp,tmp) ;
132 mEntry_.push_back( restfreq ) ;
133 mIdx_.push_back( id ) ;
134 }
135 RecordFieldPtr<uInt> molidCol(row_.record(), "MOLECULE_ID");
136 *molidCol = id;
137}
138
139void FillerBase::setDirection(const Vector<Double>& dir,
140 Float az, Float el)
141{
142 RecordFieldPtr<Array<Double> > dirCol(row_.record(), "DIRECTION");
143 *dirCol = dir;
144 RecordFieldPtr<Float> azCol(row_.record(), "AZIMUTH");
145 *azCol = az;
146 RecordFieldPtr<Float> elCol(row_.record(), "ELEVATION");
147 *elCol = el;
148}
149
150void FillerBase::setFocus(Float pa, Float faxis,
151 Float ftan, Float frot)
152{
153 RecordFieldPtr<uInt> mfocusidCol(row_.record(), "FOCUS_ID");
154 uInt id = table_->focus().addEntry(pa, faxis, ftan, frot);
155 *mfocusidCol = id;
156}
157
158void FillerBase::setTime(Double mjd, Double interval)
159{
160 RecordFieldPtr<Double> mjdCol(row_.record(), "TIME");
161 *mjdCol = mjd;
162 RecordFieldPtr<Double> intCol(row_.record(), "INTERVAL");
163 *intCol = interval;
164
165}
166
167void FillerBase::setWeather(Float temperature, Float pressure,
168 Float humidity,
169 Float windspeed, Float windaz)
170{
171 uInt nEntry = wEntry_.size() ;
172 Int idx = -1 ;
173 Vector<Float> entry( 5 ) ;
174 entry[0] = temperature ;
175 entry[1] = pressure ;
176 entry[2] = humidity ;
177 entry[3] = windspeed ;
178 entry[4] = windaz ;
179 for ( uInt i = 0 ; i < nEntry ; i++ ) {
180 if ( allEQ( entry, wEntry_[i] ) ) {
181 idx = i ;
182 break ;
183 }
184 }
185 uInt id ;
186 if ( idx != -1 )
187 id = wIdx_[idx] ;
188 else {
189 id = table_->weather().addEntry(temperature, pressure,
190 humidity, windspeed, windaz);
191 wEntry_.push_back( entry ) ;
192 wIdx_.push_back( id ) ;
193 }
194 RecordFieldPtr<uInt> mweatheridCol(row_.record(), "WEATHER_ID");
195 *mweatheridCol = id;
196}
197
198void FillerBase::setTcal(const String& tcaltime,
199 const Vector<Float>& tcal)
200{
201 uInt id = table_->tcal().addEntry(tcaltime, tcal);
202 RecordFieldPtr<uInt> mcalidCol(row_.record(), "TCAL_ID");
203 *mcalidCol = id;
204}
205
206void FillerBase::setScanRate(const Vector<Double>& srate)
207{
208 RecordFieldPtr<Array<Double> > srateCol(row_.record(), "SCANRATE");
209 *srateCol = srate;
210}
211
212void FillerBase::setReferenceBeam(Int beamno)
213{
214 RecordFieldPtr<Int> rbCol(row_.record(), "REFBEAMNO");
215 *rbCol = beamno;
216}
217
218void FillerBase::setSource(const std::string& name, Int type,
219 const std::string& fieldname,
220 const Vector<Double>& dir,
221 const Vector<Double>& propermot,
222 Double velocity)
223{
224 RecordFieldPtr<String> srcnCol(row_.record(), "SRCNAME");
225 *srcnCol = name;
226 RecordFieldPtr<Int> srctCol(row_.record(), "SRCTYPE");
227 *srctCol = type;
228 RecordFieldPtr<String> fieldnCol(row_.record(), "FIELDNAME");
229 *fieldnCol = fieldname;
230 RecordFieldPtr<Array<Double> > spmCol(row_.record(), "SRCPROPERMOTION");
231 *spmCol = propermot;
232 RecordFieldPtr<Array<Double> > sdirCol(row_.record(), "SRCDIRECTION");
233 *sdirCol = dir;
234 RecordFieldPtr<Double> svelCol(row_.record(), "SRCVELOCITY");
235 *svelCol = velocity;
236}
237
238void FillerBase::commitRow()
239{
240 table_->table().addRow();
241 row_.put(table_->table().nrow()-1);
242}
243
244void FillerBase::setWeather2(Float temperature,
245 Float pressure,
246 Float humidity,
247 Float windspeed,
248 Float windaz)
249{
250 uInt nEntry = wEntry_.size() ;
251 Int idx = -1 ;
252 Vector<Float> entry( 5 ) ;
253 entry[0] = temperature ;
254 entry[1] = pressure ;
255 entry[2] = humidity ;
256 entry[3] = windspeed ;
257 entry[4] = windaz ;
258 for ( uInt i = 0 ; i < nEntry ; i++ ) {
259 if ( allEQ( entry, wEntry_[i] ) ) {
260 idx = i ;
261 break ;
262 }
263 }
264 uInt id ;
265 if ( idx != -1 )
266 id = wIdx_[idx] ;
267 else {
268 Table tab = table_->weather().table() ;
269 Table subt = tab( tab.col("TEMPERATURE") == temperature \
270 && tab.col("PRESSURE") == pressure \
271 && tab.col("HUMIDITY") == humidity \
272 && tab.col("WINDSPEED") == windspeed \
273 && tab.col("WINDAZ") == windaz, 1 ) ;
274 Int nrow = tab.nrow() ;
275 Int nrowSel = subt.nrow() ;
276 if ( nrowSel == 0 ) {
277 tab.addRow( 1, True ) ;
278 TableRow row( tab ) ;
279 TableRecord &rec = row.record() ;
280 RecordFieldPtr<casa::uInt> rfpi ;
281 rfpi.attachToRecord( rec, "ID" ) ;
282 *rfpi = (uInt)nrow ;
283 RecordFieldPtr<casa::Float> rfp ;
284 rfp.attachToRecord( rec, "TEMPERATURE" ) ;
285 *rfp = temperature ;
286 rfp.attachToRecord( rec, "PRESSURE" ) ;
287 *rfp = pressure ;
288 rfp.attachToRecord( rec, "HUMIDITY" ) ;
289 *rfp = humidity ;
290 rfp.attachToRecord( rec, "WINDSPEED" ) ;
291 *rfp = windspeed ;
292 rfp.attachToRecord( rec, "WINDAZ" ) ;
293 *rfp = windaz ;
294 row.put( nrow, rec ) ;
295 id = (uInt)nrow ;
296 }
297 else {
298 ROTableColumn tc( subt, "ID" ) ;
299 id = tc.asuInt( 0 ) ;
300 }
301 wEntry_.push_back( entry ) ;
302 wIdx_.push_back( id ) ;
303 }
304 RecordFieldPtr<uInt> mweatheridCol(row_.record(), "WEATHER_ID");
305 *mweatheridCol = id;
306}
307
308void FillerBase::setTcal2(const String& tcaltime,
309 const Vector<Float>& tcal)
310{
311 uInt id = 0 ;
312 Table tab = table_->tcal().table() ;
313 Table result =
314 //tab( nelements(tab.col("TCAL")) == uInt (tcal.size()) &&
315 // all(tab.col("TCAL")== tcal) &&
316 // tab.col("TIME") == tcaltime, 1 ) ;
317 tab( nelements(tab.col("TCAL")) == uInt (tcal.size()) &&
318 all(tab.col("TCAL")== tcal), 1 ) ;
319
320 if ( result.nrow() > 0 ) {
321 ROTableColumn tmpCol( result, "ID" ) ;
322 tmpCol.getScalar( 0, id ) ;
323 }
324 else {
325 uInt rno = tab.nrow();
326 tab.addRow();
327 TableColumn idCol( tab, "ID" ) ;
328 TableColumn tctimeCol( tab, "TIME" ) ;
329 ArrayColumn<Float> tcalCol( tab, "TCAL" ) ;
330 // get last assigned _id and increment
331 if ( rno > 0 ) {
332 idCol.getScalar(rno-1, id);
333 id++;
334 }
335 tctimeCol.putScalar(rno, tcaltime);
336 tcalCol.put(rno, tcal);
337 idCol.putScalar(rno, id);
338 }
339
340 RecordFieldPtr<uInt> mcalidCol(row_.record(), "TCAL_ID");
341 *mcalidCol = id;
342}
343
344};
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