source: branches/hpc34/src/MSWriter.cpp @ 2592

Last change on this file since 2592 was 2592, checked in by Takeshi Nakazato, 12 years ago

New Development: No

JIRA Issue: No

Ready for Test: Yes

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: List test programs

Put in Release Notes: Yes/No?

Module(s): Module Names change impacts.

Description: Describe your changes here...

Not initialize POINTING row in addRow(). Instead all the columns are
filled by hand.


File size: 76.5 KB
Line 
1//
2// C++ Interface: MSWriter
3//
4// Description:
5//
6// This class is specific writer for MS format
7//
8// Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2010
9//
10// Copyright: See COPYING file that comes with this distribution
11//
12//
13#include <assert.h>
14
15#include <casa/OS/File.h>
16#include <casa/OS/RegularFile.h>
17#include <casa/OS/Directory.h>
18#include <casa/OS/SymLink.h>
19#include <casa/BasicSL/String.h>
20#include <casa/Arrays/Cube.h>
21
22#include <tables/Tables/ExprNode.h>
23#include <tables/Tables/TableDesc.h>
24#include <tables/Tables/SetupNewTab.h>
25#include <tables/Tables/TableIter.h>
26#include <tables/Tables/RefRows.h>
27#include <tables/Tables/TableRow.h>
28
29#include <ms/MeasurementSets/MeasurementSet.h>
30#include <ms/MeasurementSets/MSColumns.h>
31#include <ms/MeasurementSets/MSPolIndex.h>
32#include <ms/MeasurementSets/MSDataDescIndex.h>
33#include <ms/MeasurementSets/MSSourceIndex.h>
34
35#include "MSWriter.h"
36#include "STHeader.h"
37#include "STFrequencies.h"
38#include "STMolecules.h"
39#include "STTcal.h"
40#include "MathUtils.h"
41#include "TableTraverse.h"
42
43using namespace casa ;
44using namespace std ;
45
46namespace asap {
47
48class CorrTypeHandler {
49public:
50  CorrTypeHandler()
51  {}
52  virtual ~CorrTypeHandler() {}
53  virtual Vector<Stokes::StokesTypes> corrType() = 0 ;
54  virtual void reset()
55  {
56    npol = 0 ;
57  }
58  void append( uInt polno )
59  {
60    polnos[npol] = polno ;
61    npol++ ;
62  }
63  uInt nPol() { return npol ; }
64protected:
65  Vector<Stokes::StokesTypes> polmap ;
66  uInt polnos[4] ;
67  uInt npol ;
68};
69
70class LinearHandler : public CorrTypeHandler {
71public:
72  LinearHandler()
73    : CorrTypeHandler()
74  {
75    initMap() ;
76  }
77  virtual ~LinearHandler() {}
78  virtual Vector<Stokes::StokesTypes> corrType()
79  {
80    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
81    if ( npol < 4 ) {
82      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
83        ret[ipol] = polmap[polnos[ipol]] ;
84    }
85    else if ( npol == 4 ) {
86      ret[0] = polmap[0] ;
87      ret[1] = polmap[2] ;
88      ret[2] = polmap[3] ;
89      ret[4] = polmap[1] ;
90    }
91    else {
92      throw( AipsError("npol > 4") ) ;
93    }
94    return ret ;
95  }
96protected:
97  void initMap()
98  {
99    polmap.resize( 4 ) ;
100    polmap[0] = Stokes::XX ;
101    polmap[1] = Stokes::YY ;
102    polmap[2] = Stokes::XY ;
103    polmap[3] = Stokes::YX ;
104  }
105};
106class CircularHandler : public CorrTypeHandler {
107public:
108  CircularHandler()
109    : CorrTypeHandler()
110  {
111    initMap() ;
112  }
113  virtual ~CircularHandler() {}
114  virtual Vector<Stokes::StokesTypes> corrType()
115  {
116    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
117    if ( npol < 4 ) {
118      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
119        ret[ipol] = polmap[polnos[ipol]] ;
120    }
121    else if ( npol == 4 ) {
122      ret[0] = polmap[0] ;
123      ret[1] = polmap[2] ;
124      ret[2] = polmap[3] ;
125      ret[3] = polmap[1] ;
126    }
127    else {
128      throw( AipsError("npol > 4") ) ;
129    }
130    return ret ;
131  }
132private:
133  void initMap()
134  {
135    polmap.resize( 4 ) ;
136    polmap[0] = Stokes::RR ;
137    polmap[1] = Stokes::LL ;
138    polmap[2] = Stokes::RL ;
139    polmap[3] = Stokes::LR ;
140  }
141};
142class StokesHandler : public CorrTypeHandler {
143public:
144  StokesHandler()
145    : CorrTypeHandler()
146  {
147    initMap() ;
148  }
149  virtual ~StokesHandler() {}
150  virtual Vector<Stokes::StokesTypes> corrType()
151  {
152    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
153    if ( npol <= 4 ) {
154      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
155        ret[ipol] = polmap[polnos[ipol]] ;
156    }
157    else {
158      throw( AipsError("npol > 4") ) ;
159    }
160    return ret ;
161  }
162private:
163  void initMap()
164  {
165    polmap.resize( 4 ) ;
166    polmap[0] = Stokes::I ;
167    polmap[1] = Stokes::Q ;
168    polmap[2] = Stokes::U ;
169    polmap[3] = Stokes::V ;
170  }
171};
172class LinPolHandler : public CorrTypeHandler {
173public:
174  LinPolHandler()
175    : CorrTypeHandler()
176  {
177    initMap() ;
178  }
179  virtual ~LinPolHandler() {}
180  virtual Vector<Stokes::StokesTypes> corrType()
181  {
182    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
183    if ( npol <= 2 ) {
184      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
185        ret[ipol] = polmap[polnos[ipol]] ;
186    }
187    else {
188      throw( AipsError("npol > 4") ) ;
189    }
190    return ret ;
191  }
192private:
193  void initMap()
194  {
195    polmap.resize( 2 ) ;
196    polmap[0] = Stokes::Plinear ;
197    polmap[1] = Stokes::Pangle ;
198  }
199};
200
201class DataHolder {
202public:
203  DataHolder( TableRow &tableRow, String polType )
204    : row( tableRow )
205  {
206    nchan = 0 ;
207    npol = 0 ;
208    makeCorrTypeHandler( polType ) ;
209    attach() ;
210    flagRow.resize( 4 ) ;
211    reset() ;
212    sigmaTemplate.resize( 4 ) ;
213    sigmaTemplate = 1.0 ;
214  }
215  virtual ~DataHolder() {}
216  virtual void post() = 0 ;
217  virtual void reset()
218  {
219    corr->reset() ;
220    flagRow = False ;
221    npol = 0 ;
222  }
223  virtual void accumulate( uInt id, Vector<Float> &sp, Vector<Bool> &fl, Bool &flr )
224  {
225    accumulateCorrType( id ) ;
226    accumulateData( id, sp ) ;
227    accumulateFlag( id, fl ) ;
228    accumulateFlagRow( id, flr ) ;
229  }
230  uInt nPol() { return npol ; }
231  uInt nChan() { return nchan ; }
232  Vector<Int> corrTypeInt()
233  {
234    Vector<Int> v( npol ) ;
235    convertArray( v, corr->corrType() ) ;
236    return v ;
237  }
238  Vector<Stokes::StokesTypes> corrType() { return corr->corrType() ; }
239  void setNchan( uInt num )
240  {
241    nchan = num ;
242    resize() ;
243  }
244protected:
245  void postAuxiliary()
246  {
247    Vector<Float> w = sigmaTemplate( IPosition(1,0), IPosition(1,npol-1) ) ;
248    sigmaRF.define( w ) ;
249    weightRF.define( w ) ;
250    Cube<Bool> c( npol, nchan, 1, False ) ;
251    flagCategoryRF.define( c ) ;
252  }
253  inline void accumulateCorrType( uInt &id )
254  {
255    corr->append( id ) ;
256    npol = corr->nPol() ;
257  }
258  inline void accumulateFlagRow( uInt &id, Bool &flr )
259  {
260    flagRow[id] = flr ;
261  }
262  void postFlagRow()
263  {
264    *flagRowRF = anyEQ( flagRow, True ) ;
265  }
266  inline void accumulateFlag( uInt &id, Vector<Bool> &fl )
267  {
268    flag.row( id ) = fl ;
269  }
270  virtual void postFlag() = 0 ;
271  inline void accumulateData( uInt &id, Vector<Float> &sp )
272  {
273    data.row( id ) = sp ;
274  }
275  virtual void postData() = 0 ;
276  TableRow &row ;
277  uInt nchan ;
278  uInt npol ;
279  CountedPtr<CorrTypeHandler> corr;
280  RecordFieldPtr< Vector<Float> > sigmaRF ;
281  RecordFieldPtr< Vector<Float> > weightRF ;
282  RecordFieldPtr< Array<Bool> > flagRF ;
283  RecordFieldPtr<Bool> flagRowRF ;
284  RecordFieldPtr< Cube<Bool> > flagCategoryRF ;
285  Vector<Bool> flagRow ;
286  Matrix<Bool> flag ;
287  Matrix<Float> data ;
288  Vector<Float> sigmaTemplate ;
289private:
290  void makeCorrTypeHandler( String &polType )
291  {
292    if ( polType == "linear" )
293      corr = new LinearHandler() ;
294    else if ( polType == "circular" )
295      corr = new CircularHandler() ;
296    else if ( polType == "stokes" )
297      corr = new StokesHandler() ;
298    else if ( polType == "linpol" )
299      corr = new LinPolHandler() ;
300    else
301      throw( AipsError("Invalid polarization type") ) ;
302  }
303  void attach()
304  {
305    TableRecord &rec = row.record() ;
306    sigmaRF.attachToRecord( rec, "SIGMA" ) ;
307    weightRF.attachToRecord( rec, "WEIGHT" ) ;
308    flagRF.attachToRecord( rec, "FLAG" ) ;
309    flagRowRF.attachToRecord( rec, "FLAG_ROW" ) ;
310    flagCategoryRF.attachToRecord( rec, "FLAG_CATEGORY" ) ;
311  }
312  void resize()
313  {
314    flag.resize( 4, nchan ) ;
315    data.resize( 4, nchan ) ;
316  }
317};
318
319class FloatDataHolder : public DataHolder {
320public:
321  FloatDataHolder( TableRow &tableRow, String polType )
322    : DataHolder( tableRow, polType )
323  {
324    attachData() ;
325  }
326  virtual ~FloatDataHolder() {}
327  virtual void post()
328  {
329    postData() ;
330    postFlag() ;
331    postFlagRow() ;
332    postAuxiliary() ;
333  }
334protected:
335  virtual void postFlag()
336  {
337    flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
338  }
339  virtual void postData()
340  {
341    dataRF.define( data( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
342  }
343private:
344  void attachData()
345  {
346    dataRF.attachToRecord( row.record(), "FLOAT_DATA" ) ;
347  }
348  RecordFieldPtr< Matrix<Float> > dataRF;
349};
350
351class ComplexDataHolder : public DataHolder {
352public:
353  ComplexDataHolder( TableRow &tableRow, String polType )
354    : DataHolder( tableRow, polType )
355  {
356    attachData() ;
357  }
358  virtual ~ComplexDataHolder() {}
359  virtual void accumulate( uInt id, Vector<Float> &sp, Vector<Bool> &fl, Bool &flr )
360  {
361    DataHolder::accumulate( id, sp, fl, flr ) ;
362    isFilled[id] = True ;
363  }
364  virtual void post()
365  {
366    postData() ;
367    postFlag() ;
368    postFlagRow() ;
369    postAuxiliary() ;
370  }
371  virtual void reset()
372  {
373    DataHolder::reset() ;
374    for ( uInt i = 0 ; i < 4 ; i++ )
375      isFilled[i] = False ;
376  }
377protected:
378  virtual void postFlag()
379  {
380    if ( npol == 4 ) {
381      Vector<Bool> tmp = flag.row( 3 ) ;
382      flag.row( 3 ) = flag.row( 1 ) ;
383      flag.row( 2 ) = flag.row( 2 ) || tmp ;
384      flag.row( 1 ) = flag.row( 2 ) ;
385      flagRF.define( flag ) ;
386    }
387    else {
388      flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
389    }
390  }
391  virtual void postData()
392  {
393    Matrix<Float> tmp( 2, nchan, 0.0 ) ;
394    Matrix<Complex> v( npol, nchan ) ;
395    if ( isFilled[0] ) {
396      tmp.row( 0 ) = data.row( 0 ) ;
397      v.row( 0 ) = RealToComplex( tmp ) ;
398    }
399    if ( isFilled[1] ) {
400      tmp.row( 0 ) = data.row( 1 ) ;
401      v.row( npol-1 ) = RealToComplex( tmp ) ;
402    }
403    if ( isFilled[2] && isFilled[3] ) {
404      tmp.row( 0 ) = data.row( 2 ) ;
405      tmp.row( 1 ) = data.row( 3 ) ;
406      v.row( 1 ) = RealToComplex( tmp ) ;
407      v.row( 2 ) = conj( v.row( 1 ) ) ;
408    }
409    dataRF.define( v ) ;
410  }
411private:
412  void attachData()
413  {
414    dataRF.attachToRecord( row.record(), "DATA" ) ;
415  }
416  RecordFieldPtr< Matrix<Complex> > dataRF;
417  Bool isFilled[4] ;
418};
419
420class BaseMSWriterVisitor: public TableVisitor {
421  const String *lastFieldName;
422  uInt lastRecordNo;
423  uInt lastBeamNo, lastScanNo, lastIfNo, lastPolNo;
424  Int lastSrcType;
425  uInt lastCycleNo;
426  Double lastTime;
427protected:
428  const Table &table;
429  uInt count;
430public:
431  BaseMSWriterVisitor(const Table &table)
432    : table(table)
433  {
434    static const String dummy;
435    lastFieldName = &dummy;
436    count = 0;
437  }
438 
439  virtual void enterFieldName(const uInt recordNo, const String &columnValue) {
440  }
441  virtual void leaveFieldName(const uInt recordNo, const String &columnValue) {
442  }
443  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) { }
444  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) { }
445  virtual void enterScanNo(const uInt recordNo, uInt columnValue) { }
446  virtual void leaveScanNo(const uInt recordNo, uInt columnValue) { }
447  virtual void enterIfNo(const uInt recordNo, uInt columnValue) { }
448  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) { }
449  virtual void enterSrcType(const uInt recordNo, Int columnValue) { }
450  virtual void leaveSrcType(const uInt recordNo, Int columnValue) { }
451  virtual void enterCycleNo(const uInt recordNo, uInt columnValue) { }
452  virtual void leaveCycleNo(const uInt recordNo, uInt columnValue) { }
453  virtual void enterTime(const uInt recordNo, Double columnValue) { }
454  virtual void leaveTime(const uInt recordNo, Double columnValue) { }
455  virtual void enterPolNo(const uInt recordNo, uInt columnValue) { }
456  virtual void leavePolNo(const uInt recordNo, uInt columnValue) { }
457
458  virtual Bool visitRecord(const uInt recordNo,
459                           const String &fieldName,
460                           const uInt beamNo,
461                           const uInt scanNo,
462                           const uInt ifNo,
463                           const Int srcType,
464                           const uInt cycleNo,
465                           const Double time,
466                           const uInt polNo) { return True ;}
467
468  virtual Bool visit(Bool isFirst, const uInt recordNo,
469                     const uInt nCols, void const *const colValues[]) {
470    const String *fieldName = NULL;
471    uInt beamNo, scanNo, ifNo;
472    Int srcType;
473    uInt cycleNo;
474    Double time;
475    uInt polNo;
476    { // prologue
477      uInt i = 0;
478      {
479        const String *col = (const String*)colValues[i++];
480        fieldName = &col[recordNo];
481      }
482      {
483        const uInt *col = (const uInt *)colValues[i++];
484        beamNo = col[recordNo];
485      }
486      {
487        const uInt *col = (const uInt *)colValues[i++];
488        scanNo = col[recordNo];
489      }
490      {
491        const uInt *col = (const uInt *)colValues[i++];
492        ifNo = col[recordNo];
493      }
494      {
495        const Int *col = (const Int *)colValues[i++];
496        srcType = col[recordNo];
497      }
498      {
499        const uInt *col = (const uInt *)colValues[i++];
500        cycleNo = col[recordNo];
501      }
502      {
503        const Double *col = (const Double *)colValues[i++];
504        time = col[recordNo];
505      }
506      {
507        const Int *col = (const Int *)colValues[i++];
508        polNo = col[recordNo];
509      }
510      assert(nCols == i);
511    }
512
513    if (isFirst) {
514      enterFieldName(recordNo, *fieldName);
515      enterBeamNo(recordNo, beamNo);
516      enterScanNo(recordNo, scanNo);
517      enterIfNo(recordNo, ifNo);
518      enterSrcType(recordNo, srcType);
519      enterCycleNo(recordNo, cycleNo);
520      enterTime(recordNo, time);
521      enterPolNo(recordNo, polNo);
522    } else {
523      if (lastFieldName->compare(*fieldName) != 0) {
524        leavePolNo(lastRecordNo, lastPolNo);
525        leaveTime(lastRecordNo, lastTime);
526        leaveCycleNo(lastRecordNo, lastCycleNo);
527        leaveSrcType(lastRecordNo, lastSrcType);
528        leaveIfNo(lastRecordNo, lastIfNo);
529        leaveScanNo(lastRecordNo, lastScanNo);
530        leaveBeamNo(lastRecordNo, lastBeamNo);
531        leaveFieldName(lastRecordNo, *lastFieldName);
532
533        enterFieldName(recordNo, *fieldName);
534        enterBeamNo(recordNo, beamNo);
535        enterScanNo(recordNo, scanNo);
536        enterIfNo(recordNo, ifNo);
537        enterSrcType(recordNo, srcType);
538        enterCycleNo(recordNo, cycleNo);
539        enterTime(recordNo, time);
540        enterPolNo(recordNo, polNo);
541      } else if (lastBeamNo != beamNo) {
542        leavePolNo(lastRecordNo, lastPolNo);
543        leaveTime(lastRecordNo, lastTime);
544        leaveCycleNo(lastRecordNo, lastCycleNo);
545        leaveSrcType(lastRecordNo, lastSrcType);
546        leaveIfNo(lastRecordNo, lastIfNo);
547        leaveScanNo(lastRecordNo, lastScanNo);
548        leaveBeamNo(lastRecordNo, lastBeamNo);
549
550        enterBeamNo(recordNo, beamNo);
551        enterScanNo(recordNo, scanNo);
552        enterIfNo(recordNo, ifNo);
553        enterSrcType(recordNo, srcType);
554        enterCycleNo(recordNo, cycleNo);
555        enterTime(recordNo, time);
556        enterPolNo(recordNo, polNo);
557      } else if (lastScanNo != scanNo) {
558        leavePolNo(lastRecordNo, lastPolNo);
559        leaveTime(lastRecordNo, lastTime);
560        leaveCycleNo(lastRecordNo, lastCycleNo);
561        leaveSrcType(lastRecordNo, lastSrcType);
562        leaveIfNo(lastRecordNo, lastIfNo);
563        leaveScanNo(lastRecordNo, lastScanNo);
564
565        enterScanNo(recordNo, scanNo);
566        enterIfNo(recordNo, ifNo);
567        enterSrcType(recordNo, srcType);
568        enterCycleNo(recordNo, cycleNo);
569        enterTime(recordNo, time);
570        enterPolNo(recordNo, polNo);
571      } else if (lastIfNo != ifNo) {
572        leavePolNo(lastRecordNo, lastPolNo);
573        leaveTime(lastRecordNo, lastTime);
574        leaveCycleNo(lastRecordNo, lastCycleNo);
575        leaveSrcType(lastRecordNo, lastSrcType);
576        leaveIfNo(lastRecordNo, lastIfNo);
577
578        enterIfNo(recordNo, ifNo);
579        enterSrcType(recordNo, srcType);
580        enterCycleNo(recordNo, cycleNo);
581        enterTime(recordNo, time);
582        enterPolNo(recordNo, polNo);
583      } else if (lastSrcType != srcType) {
584        leavePolNo(lastRecordNo, lastPolNo);
585        leaveTime(lastRecordNo, lastTime);
586        leaveCycleNo(lastRecordNo, lastCycleNo);
587        leaveSrcType(lastRecordNo, lastSrcType);
588
589        enterSrcType(recordNo, srcType);
590        enterCycleNo(recordNo, cycleNo);
591        enterTime(recordNo, time);
592        enterPolNo(recordNo, polNo);
593      } else if (lastCycleNo != cycleNo) {
594        leavePolNo(lastRecordNo, lastPolNo);
595        leaveTime(lastRecordNo, lastTime);
596        leaveCycleNo(lastRecordNo, lastCycleNo);
597
598        enterCycleNo(recordNo, cycleNo);
599        enterTime(recordNo, time);
600        enterPolNo(recordNo, polNo);
601      } else if (lastTime != time) {
602        leavePolNo(lastRecordNo, lastPolNo);
603        leaveTime(lastRecordNo, lastTime);
604
605        enterTime(recordNo, time);
606        enterPolNo(recordNo, polNo);
607      } else if (lastPolNo != polNo) {
608        leavePolNo(lastRecordNo, lastPolNo);
609        enterPolNo(recordNo, polNo);
610      }
611    }
612    count++;
613    Bool result = visitRecord(recordNo, *fieldName, beamNo, scanNo, ifNo, srcType,
614                              cycleNo, time, polNo);
615
616    { // epilogue
617      lastRecordNo = recordNo;
618
619      lastFieldName = fieldName;
620      lastBeamNo = beamNo;
621      lastScanNo = scanNo;
622      lastIfNo = ifNo;
623      lastSrcType = srcType;
624      lastCycleNo = cycleNo;
625      lastTime = time;
626      lastPolNo = polNo;
627    }
628    return result ;
629  }
630
631  virtual void finish() {
632    if (count > 0) {
633      leavePolNo(lastRecordNo, lastPolNo);
634      leaveTime(lastRecordNo, lastTime);
635      leaveCycleNo(lastRecordNo, lastCycleNo);
636      leaveSrcType(lastRecordNo, lastSrcType);
637      leaveIfNo(lastRecordNo, lastIfNo);
638      leaveScanNo(lastRecordNo, lastScanNo);
639      leaveBeamNo(lastRecordNo, lastBeamNo);
640      leaveFieldName(lastRecordNo, *lastFieldName);
641    }
642  }
643};
644
645class MSWriterVisitor: public BaseMSWriterVisitor, public MSWriterUtils {
646public:
647  MSWriterVisitor(const Table &table, Table &mstable)
648    : BaseMSWriterVisitor(table),
649      ms(mstable)
650  {
651    rowidx = 0 ;
652    fieldName = "" ;
653    defaultFieldId = 0 ;
654    spwId = -1 ;
655    subscan = 1 ;
656    ptName = "" ;
657    srcId = 0 ;
658   
659    row = TableRow( ms ) ;
660
661    initPolarization() ;
662    initFrequencies() ;
663
664    //
665    // add rows to MS
666    //
667    uInt addrow = table.nrow() ;
668    ms.addRow( addrow ) ;
669
670    // attach to Scantable columns
671    spectraCol.attach( table, "SPECTRA" ) ;
672    flagtraCol.attach( table, "FLAGTRA" ) ;
673    flagRowCol.attach( table, "FLAGROW" ) ;
674    tcalIdCol.attach( table, "TCAL_ID" ) ;
675    intervalCol.attach( table, "INTERVAL" ) ;
676    directionCol.attach( table, "DIRECTION" ) ;
677    scanRateCol.attach( table, "SCANRATE" ) ;
678    timeCol.attach( table, "TIME" ) ;
679    freqIdCol.attach( table, "FREQ_ID" ) ;
680    sourceNameCol.attach( table, "SRCNAME" ) ;
681    sourceDirectionCol.attach( table, "SRCDIRECTION" ) ;
682    fieldNameCol.attach( table, "FIELDNAME" ) ;
683
684    // MS subtables
685    attachSubtables() ;
686
687    // attach to MS columns
688    attachMain() ;
689    attachPointing() ;
690  }
691 
692  virtual void enterFieldName(const uInt recordNo, const String &columnValue) {
693    //printf("%u: FieldName: %s\n", recordNo, columnValue.c_str());
694    fieldName = fieldNameCol.asString( recordNo ) ;
695    String::size_type pos = fieldName.find( "__" ) ;
696    if ( pos != String::npos ) {
697      fieldId = String::toInt( fieldName.substr( pos+2 ) ) ;
698      fieldName = fieldName.substr( 0, pos ) ;
699    }
700    else {
701      fieldId = defaultFieldId ;
702      defaultFieldId++ ;
703    }
704    Double tSec = timeCol.asdouble( recordNo ) * 86400.0 ;
705    Vector<Double> srcDir = sourceDirectionCol( recordNo ) ;
706    Vector<Double> srate = scanRateCol( recordNo ) ;
707    String srcName = sourceNameCol.asString( recordNo ) ;
708
709    addField( fieldId, fieldName, srcName, srcDir, srate, tSec ) ;
710
711    // put value
712    *fieldIdRF = fieldId ;
713  }
714  virtual void leaveFieldName(const uInt recordNo, const String &columnValue) {
715  }
716  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) {
717    //printf("%u: BeamNo: %u\n", recordNo, columnValue);
718   
719    feedId = (Int)columnValue ;
720
721    // put value
722    *feed1RF = feedId ;
723    *feed2RF = feedId ;
724  }
725  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) {
726  }
727  virtual void enterScanNo(const uInt recordNo, uInt columnValue) {
728    //printf("%u: ScanNo: %u\n", recordNo, columnValue);
729
730    // put value
731    // SCAN_NUMBER is 0-based in Scantable while 1-based in MS
732    *scanNumberRF = (Int)columnValue + 1 ;
733  }
734  virtual void leaveScanNo(const uInt recordNo, uInt columnValue) {
735    subscan = 1 ;
736  }
737  virtual void enterIfNo(const uInt recordNo, uInt columnValue) {
738    //printf("%u: IfNo: %u\n", recordNo, columnValue);
739
740    spwId = (Int)columnValue ;
741    uInt freqId = freqIdCol.asuInt( recordNo ) ;
742
743    Vector<Float> sp = spectraCol( recordNo ) ;
744    uInt nchan = sp.nelements() ;
745    holder->setNchan( nchan ) ;
746
747    addSpectralWindow( spwId, freqId ) ;
748
749    addFeed( feedId, spwId ) ;
750  }
751  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) {
752  }
753  virtual void enterSrcType(const uInt recordNo, Int columnValue) {
754    //printf("%u: SrcType: %d\n", recordNo, columnValue);
755
756    Int stateId = addState( columnValue ) ;
757
758    // put value
759    *stateIdRF = stateId ;
760  }
761  virtual void leaveSrcType(const uInt recordNo, Int columnValue) {
762  }
763  virtual void enterCycleNo(const uInt recordNo, uInt columnValue) {
764    //printf("%u: CycleNo: %u\n", recordNo, columnValue);
765  }
766  virtual void leaveCycleNo(const uInt recordNo, uInt columnValue) {
767  }
768  virtual void enterTime(const uInt recordNo, Double columnValue) {
769    //printf("%u: Time: %f\n", recordNo, columnValue);
770
771    Double timeSec = columnValue * 86400.0 ;
772    Double interval = intervalCol.asdouble( recordNo ) ;
773
774    if ( ptName.empty() ) {
775      Vector<Double> dir = directionCol( recordNo ) ;
776      Vector<Double> rate = scanRateCol( recordNo ) ;
777      if ( anyNE( rate, 0.0 ) ) {
778        Matrix<Double> msdir( 2, 2 ) ;
779        msdir.column( 0 ) = dir ;
780        msdir.column( 1 ) = rate ;
781        addPointing( timeSec, interval, msdir ) ;
782      }
783      else {
784        Matrix<Double> msdir( 2, 1 ) ;
785        msdir.column( 0 ) = dir ;
786        addPointing( timeSec, interval, msdir ) ;
787      }
788    }
789
790    // put value
791    *timeRF = timeSec ;
792    *timeCentroidRF = timeSec ;
793    *intervalRF = interval ;
794    *exposureRF = interval ;
795  }
796  virtual void leaveTime(const uInt recordNo, Double columnValue) {
797    if ( holder->nPol() > 0 ) {
798      Int polId = addPolarization() ;
799      Int ddId = addDataDescription( polId, spwId ) ;
800       
801      // put field
802      *dataDescIdRF = ddId ;
803      holder->post() ;
804     
805      // commit row
806      row.put( rowidx ) ;
807      rowidx++ ;
808
809      // reset holder
810      holder->reset() ;
811    }
812  }
813  virtual void enterPolNo(const uInt recordNo, uInt columnValue) {
814    //printf("%u: PolNo: %d\n", recordNo, columnValue);
815  }
816  virtual void leavePolNo(const uInt recordNo, uInt columnValue) {
817  }
818
819  virtual Bool visitRecord(const uInt recordNo,
820                           const String &fieldName,
821                           const uInt beamNo,
822                           const uInt scanNo,
823                           const uInt ifNo,
824                           const Int srcType,
825                           const uInt cycleNo,
826                           const Double time,
827                           const uInt polNo) {
828    //printf("%u: %s, %u, %u, %u, %d, %u, %f, %d\n", recordNo,
829    //       fieldName.c_str(), beamNo, scanNo, ifNo, srcType, cycleNo, time, polNo);
830
831    Vector<Float> sp = spectraCol( recordNo ) ;
832    Vector<uChar> tmp = flagtraCol( recordNo ) ;
833    Vector<Bool> fl( tmp.shape() ) ;
834    convertArray( fl, tmp ) ;
835    Bool flr = (Bool)flagRowCol.asuInt( recordNo ) ;
836    holder->accumulate( polNo, sp, fl, flr ) ;
837
838    return True ;
839  }
840
841  virtual void finish() {
842    BaseMSWriterVisitor::finish();
843    //printf("Total: %u\n", count);
844
845    // remove rows
846    if ( ms.nrow() > rowidx ) {
847      uInt numRemove = ms.nrow() - rowidx ;
848      //cout << "numRemove = " << numRemove << endl ;
849      Vector<uInt> rows( numRemove ) ;
850      indgen( rows, rowidx ) ;
851      ms.removeRow( rows ) ;
852    }
853
854    // fill empty SPECTRAL_WINDOW rows
855    infillSpectralWindow() ;
856  }
857
858  void dataColumnName( String name )
859  {
860    if ( name == "DATA" )
861      holder = new ComplexDataHolder( row, poltype ) ;
862    else if ( name == "FLOAT_DATA" )
863      holder = new FloatDataHolder( row, poltype ) ;
864  }
865  void pointingTableName( String name ) {
866    ptName = name ;
867  }
868  void setSourceRecord( Record &r ) {
869    srcRec = r ;
870  }
871private:
872  void addField( Int &fid, String &fname, String &srcName,
873                 Vector<Double> &sdir, Vector<Double> &srate,
874                 Double &tSec )
875  {
876    uInt nrow = fieldtab.nrow() ;
877    while( (Int)nrow <= fid ) {
878      fieldtab.addRow( 1, True ) ;
879      nrow++ ;
880    }
881
882    Matrix<Double> dir ;
883    Int numPoly = 0 ;
884    if ( anyNE( srate, 0.0 ) ) {
885      dir.resize( 2, 2 ) ;
886      dir.column( 0 ) = sdir ;
887      dir.column( 1 ) = srate ;
888      numPoly = 1 ;
889    }
890    else {
891      dir.resize( 2, 1 ) ;
892      dir.column( 0 ) = sdir ;
893    }
894    srcId = srcRec.asInt( srcName ) ;
895
896    TableRow tr( fieldtab ) ;
897    TableRecord &r = tr.record() ;
898    putField( "NAME", r, fname ) ;
899    putField( "NUM_POLY", r, numPoly ) ;
900    putField( "TIME", r, tSec ) ;
901    putField( "SOURCE_ID", r, srcId ) ;
902    defineField( "DELAY_DIR", r, dir ) ;
903    defineField( "REFERENCE_DIR", r, dir ) ;
904    defineField( "PHASE_DIR", r, dir ) ;
905    tr.put( fid ) ;
906
907    // for POINTING table
908    *poNameRF = fname ;
909  }
910  Int addState( Int &id )
911  {
912    String obsMode ;
913    Bool isSignal ;
914    Double tnoise ;
915    Double tload ;
916    queryType( id, obsMode, isSignal, tnoise, tload ) ;
917
918    String key = obsMode+"_"+String::toString( subscan ) ;
919    Int idx = -1 ;
920    uInt nEntry = stateEntry.nelements() ;
921    for ( uInt i = 0 ; i < nEntry ; i++ ) {
922      if ( stateEntry[i] == key ) {
923        idx = i ;
924        break ;
925      }
926    }
927    if ( idx == -1 ) {
928      uInt nrow = statetab.nrow() ;
929      statetab.addRow( 1, True ) ;
930      TableRow tr( statetab ) ;
931      TableRecord &r = tr.record() ;
932      putField( "OBS_MODE", r, obsMode ) ;
933      putField( "SIG", r, isSignal ) ;
934      isSignal = !isSignal ;
935      putField( "REF", r, isSignal ) ;
936      putField( "CAL", r, tnoise ) ;
937      putField( "LOAD", r, tload ) ;
938      tr.put( nrow ) ;
939      idx = nrow ;
940
941      stateEntry.resize( nEntry+1, True ) ;
942      stateEntry[nEntry] = key ;
943    }
944    subscan++ ;
945
946    return idx ;
947  }
948  void addPointing( Double &tSec, Double &interval, Matrix<Double> &dir )
949  {
950    uInt nrow = potab.nrow() ;
951    potab.addRow() ;
952
953    *poNumPolyRF = dir.ncolumn() - 1 ;
954    *poTimeRF = tSec ;
955    *poTimeOriginRF = tSec ;
956    *poIntervalRF = interval ;
957    poDirectionRF.define( dir ) ;
958    poTargetRF.define( dir ) ;
959    porow.put( nrow ) ;
960  }
961  Int addPolarization()
962  {
963    Int idx = -1 ;
964    Vector<Int> corrType = holder->corrTypeInt() ;
965    uInt nEntry = polEntry.size() ;
966    for ( uInt i = 0 ; i < nEntry ; i++ ) {
967      if ( polEntry[i].conform( corrType ) && allEQ( polEntry[i], corrType ) ) {
968        idx = i ;
969        break ;
970      }
971    }
972   
973    Int numCorr = holder->nPol() ;
974    Matrix<Int> corrProduct = corrProductTemplate[numCorr] ;
975
976    if ( idx == -1 ) {
977      uInt nrow = poltab.nrow() ;
978      poltab.addRow( 1, True ) ;
979      TableRow tr( poltab ) ;
980      TableRecord &r = tr.record() ;
981      putField( "NUM_CORR", r, numCorr ) ;
982      defineField( "CORR_TYPE", r, corrType ) ;
983      defineField( "CORR_PRODUCT", r, corrProduct ) ;
984      tr.put( nrow ) ;
985      idx = nrow ;
986
987      polEntry.resize( nEntry+1 ) ;
988      polEntry[nEntry] = corrType ;
989    }
990
991    return idx ;
992  }
993  Int addDataDescription( Int pid, Int sid )
994  {
995    Int idx = -1 ;
996    uInt nEntry = ddEntry.nrow() ;
997    Vector<Int> key( 2 ) ;
998    key[0] = pid ;
999    key[1] = sid ;
1000    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1001      if ( allEQ( ddEntry.row(i), key ) ) {
1002        idx = i ;
1003        break ;
1004      }
1005    }
1006
1007    if ( idx == -1 ) {
1008      uInt nrow = ddtab.nrow() ;
1009      ddtab.addRow( 1, True ) ;
1010      TableRow tr( ddtab ) ;
1011      TableRecord &r = tr.record() ;
1012      putField( "POLARIZATION_ID", r, pid ) ;
1013      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1014      tr.put( nrow ) ;
1015      idx = nrow ;
1016
1017      ddEntry.resize( nEntry+1, 2, True ) ;
1018      ddEntry.row(nEntry) = key ;
1019    }
1020
1021    return idx ;
1022  }
1023  void infillSpectralWindow()
1024  {
1025    ROScalarColumn<Int> nchanCol( spwtab, "NUM_CHAN" ) ;
1026    Vector<Int> nchan = nchanCol.getColumn() ;
1027    TableRow tr( spwtab ) ;
1028    TableRecord &r = tr.record() ;
1029    Int mfr = 1 ;
1030    Vector<Double> dummy( 1, 0.0 ) ;
1031    putField( "MEAS_FREQ_REF", r, mfr ) ;
1032    defineField( "CHAN_FREQ", r, dummy ) ;
1033    defineField( "CHAN_WIDTH", r, dummy ) ;
1034    defineField( "EFFECTIVE_BW", r, dummy ) ;
1035    defineField( "RESOLUTION", r, dummy ) ;
1036
1037    for ( uInt i = 0 ; i < spwtab.nrow() ; i++ ) {
1038      if ( nchan[i] == 0 )
1039        tr.put( i ) ;
1040    }
1041  }
1042  void addSpectralWindow( Int sid, uInt fid )
1043  {
1044    if ( !processedFreqId[fid] ) {
1045      uInt nrow = spwtab.nrow() ;
1046      while( (Int)nrow <= sid ) {
1047        spwtab.addRow( 1, True ) ;
1048        nrow++ ;
1049      }
1050      processedFreqId[fid] = True ;
1051    }
1052    else {
1053      return ;
1054    }
1055
1056    Double rp = refpix[fid] ;
1057    Double rv = refval[fid] ;
1058    Double ic = increment[fid] ;
1059
1060    Int mfrInt = (Int)freqframe ;
1061    Int nchan = holder->nChan() ;
1062    Double bw = nchan * abs( ic ) ;
1063    Double reffreq = rv - rp * ic ;
1064    Int netsb = 0 ; // USB->0, LSB->1
1065    if ( ic < 0 )
1066      netsb = 1 ;
1067    Vector<Double> res( nchan, abs(ic) ) ;
1068    Vector<Double> cw( nchan, ic ) ;
1069    Vector<Double> chanf( nchan ) ;
1070    indgen( chanf, reffreq, ic ) ;
1071
1072    TableRow tr( spwtab ) ;
1073    TableRecord &r = tr.record() ;
1074    putField( "MEAS_FREQ_REF", r, mfrInt ) ;
1075    putField( "NUM_CHAN", r, nchan ) ;
1076    putField( "TOTAL_BANDWIDTH", r, bw ) ;
1077    putField( "REF_FREQUENCY", r, reffreq ) ;
1078    putField( "NET_SIDEBAND", r, netsb ) ;
1079    defineField( "RESOLUTION", r, res ) ;
1080//     defineField( "CHAN_WIDTH", r, res ) ;
1081    defineField( "CHAN_WIDTH", r, cw ) ;
1082    defineField( "EFFECTIVE_BW", r, res ) ;
1083    defineField( "CHAN_FREQ", r, chanf ) ;
1084    tr.put( sid ) ;
1085  }
1086  void addFeed( Int fid, Int sid )
1087  {
1088    Int idx = -1 ;
1089    uInt nEntry = feedEntry.nrow() ;
1090    Vector<Int> key( 2 ) ;
1091    key[0] = fid ;
1092    key[1] = sid ;
1093    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1094      if ( allEQ( feedEntry.row(i), key ) ) {
1095        idx = i ;
1096        break ;
1097      }
1098    }
1099
1100    if ( idx == -1 ) {
1101      uInt nrow = feedtab.nrow() ;
1102      feedtab.addRow( 1, True ) ;
1103      Int numReceptors = 2 ;
1104      Vector<String> polType( numReceptors ) ;
1105      Matrix<Double> beamOffset( 2, numReceptors, 0.0 ) ;
1106      Vector<Double> receptorAngle( numReceptors, 0.0 ) ;
1107      if ( poltype == "linear" ) {
1108        polType[0] = "X" ;
1109        polType[1] = "Y" ;
1110      }
1111      else if ( poltype == "circular" ) {
1112        polType[0] = "R" ;
1113        polType[1] = "L" ;
1114      }
1115      else {
1116        polType[0] = "X" ;
1117        polType[1] = "Y" ;
1118      }
1119      Matrix<Complex> polResponse( numReceptors, numReceptors, 0.0 ) ;
1120     
1121      TableRow tr( feedtab ) ;
1122      TableRecord &r = tr.record() ;
1123      putField( "FEED_ID", r, fid ) ;
1124      putField( "BEAM_ID", r, fid ) ;
1125      Int tmp = 0 ;
1126      putField( "ANTENNA_ID", r, tmp ) ;
1127      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1128      putField( "NUM_RECEPTORS", r, numReceptors ) ;
1129      defineField( "POLARIZATION_TYPE", r, polType ) ;
1130      defineField( "BEAM_OFFSET", r, beamOffset ) ;
1131      defineField( "RECEPTOR_ANGLE", r, receptorAngle ) ;
1132      defineField( "POL_RESPONSE", r, polResponse ) ;
1133      tr.put( nrow ) ;
1134
1135      feedEntry.resize( nEntry+1, 2, True ) ;
1136      feedEntry.row( nEntry ) = key ;
1137    }
1138  }
1139  void initPolarization()
1140  {
1141    const TableRecord &keys = table.keywordSet() ;
1142    poltype = keys.asString( "POLTYPE" ) ;
1143
1144    initCorrProductTemplate() ;
1145  }
1146  void initFrequencies()
1147  {
1148    const TableRecord &keys = table.keywordSet() ;
1149    Table tab = keys.asTable( "FREQUENCIES" ) ;
1150    ROScalarColumn<uInt> idcol( tab, "ID" ) ;
1151    ROScalarColumn<Double> rpcol( tab, "REFPIX" ) ;
1152    ROScalarColumn<Double> rvcol( tab, "REFVAL" ) ;
1153    ROScalarColumn<Double> iccol( tab, "INCREMENT" ) ;
1154    Vector<uInt> id = idcol.getColumn() ;
1155    Vector<Double> rp = rpcol.getColumn() ;
1156    Vector<Double> rv = rvcol.getColumn() ;
1157    Vector<Double> ic = iccol.getColumn() ;
1158    for ( uInt i = 0 ; i < id.nelements() ; i++ ) {
1159      processedFreqId.insert( pair<uInt,Bool>( id[i], False ) ) ;
1160      refpix.insert( pair<uInt,Double>( id[i], rp[i] ) ) ;
1161      refval.insert( pair<uInt,Double>( id[i], rv[i] ) ) ;
1162      increment.insert( pair<uInt,Double>( id[i], ic[i] ) ) ;
1163    }
1164    String frameStr = tab.keywordSet().asString( "BASEFRAME" ) ;
1165    MFrequency::getType( freqframe, frameStr ) ;
1166  }
1167  void attachSubtables()
1168  {
1169    const TableRecord &keys = table.keywordSet() ;
1170    TableRecord &mskeys = ms.rwKeywordSet() ;
1171
1172    // FIELD table
1173    fieldtab = mskeys.asTable( "FIELD" ) ;
1174
1175    // SPECTRAL_WINDOW table
1176    spwtab = mskeys.asTable( "SPECTRAL_WINDOW" ) ;
1177
1178    // POINTING table
1179    potab = mskeys.asTable( "POINTING" ) ;
1180
1181    // POLARIZATION table
1182    poltab = mskeys.asTable( "POLARIZATION" ) ;
1183
1184    // DATA_DESCRIPTION table
1185    ddtab = mskeys.asTable( "DATA_DESCRIPTION" ) ;
1186
1187    // STATE table
1188    statetab = mskeys.asTable( "STATE" ) ;
1189
1190    // FEED table
1191    feedtab = mskeys.asTable( "FEED" ) ;
1192  }
1193  void attachMain()
1194  {
1195    TableRecord &r = row.record() ;
1196    dataDescIdRF.attachToRecord( r, "DATA_DESC_ID" ) ;
1197    timeRF.attachToRecord( r, "TIME" ) ;
1198    timeCentroidRF.attachToRecord( r, "TIME_CENTROID" ) ;
1199    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1200    exposureRF.attachToRecord( r, "EXPOSURE" ) ;
1201    fieldIdRF.attachToRecord( r, "FIELD_ID" ) ;
1202    feed1RF.attachToRecord( r, "FEED1" ) ;
1203    feed2RF.attachToRecord( r, "FEED2" ) ;
1204    scanNumberRF.attachToRecord( r, "SCAN_NUMBER" ) ;
1205    stateIdRF.attachToRecord( r, "STATE_ID" ) ;
1206
1207    // constant values
1208    Int id = 0 ;
1209    RecordFieldPtr<Int> intRF( r, "OBSERVATION_ID" ) ;
1210    *intRF = 0 ;
1211    intRF.attachToRecord( r, "ANTENNA1" ) ;
1212    *intRF = 0 ;
1213    intRF.attachToRecord( r, "ANTENNA2" ) ;
1214    *intRF = 0 ;
1215    intRF.attachToRecord( r, "ARRAY_ID" ) ;
1216    *intRF = 0 ;
1217    intRF.attachToRecord( r, "PROCESSOR_ID" ) ;
1218    *intRF = 0 ;
1219    RecordFieldPtr< Vector<Double> > arrayRF( r, "UVW" ) ;
1220    arrayRF.define( Vector<Double>( 3, 0.0 ) ) ;
1221  }
1222  void attachPointing()
1223  {
1224    porow = TableRow( potab ) ;
1225    TableRecord &r = porow.record() ;
1226    poNumPolyRF.attachToRecord( r, "NUM_POLY" ) ;
1227    poTimeRF.attachToRecord( r, "TIME" ) ;
1228    poTimeOriginRF.attachToRecord( r, "TIME_ORIGIN" ) ;
1229    poIntervalRF.attachToRecord( r, "INTERVAL" ) ;
1230    poNameRF.attachToRecord( r, "NAME" ) ;
1231    poDirectionRF.attachToRecord( r, "DIRECTION" ) ;
1232    poTargetRF.attachToRecord( r, "TARGET" ) ;
1233   
1234    // constant values
1235    RecordFieldPtr<Int> antIdRF( r, "ANTENNA_ID" ) ;
1236    *antIdRF = 0 ;
1237    RecordFieldPtr<Bool> trackingRF( r, "TRACKING" ) ;
1238    *trackingRF = True ;
1239  }
1240  void queryType( Int type, String &stype, Bool &b, Double &t, Double &l )
1241  {
1242    t = 0.0 ;
1243    l = 0.0 ;
1244
1245    String sep1="#" ;
1246    String sep2="," ;
1247    String target="OBSERVE_TARGET" ;
1248    String atmcal="CALIBRATE_TEMPERATURE" ;
1249    String onstr="ON_SOURCE" ;
1250    String offstr="OFF_SOURCE" ;
1251    String pswitch="POSITION_SWITCH" ;
1252    String nod="NOD" ;
1253    String fswitch="FREQUENCY_SWITCH" ;
1254    String sigstr="SIG" ;
1255    String refstr="REF" ;
1256    String unspecified="UNSPECIFIED" ;
1257    String ftlow="LOWER" ;
1258    String fthigh="HIGHER" ;
1259    switch ( type ) {
1260    case SrcType::PSON:
1261      stype = target+sep1+onstr+sep2+pswitch ;
1262      b = True ;
1263      break ;
1264    case SrcType::PSOFF:
1265      stype = target+sep1+offstr+sep2+pswitch ;
1266      b = False ;
1267      break ;
1268    case SrcType::NOD:
1269      stype = target+sep1+onstr+sep2+nod ;
1270      b = True ;
1271      break ;
1272    case SrcType::FSON:
1273      stype = target+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1274      b = True ;
1275      break ;
1276    case SrcType::FSOFF:
1277      stype = target+sep1+onstr+sep2+fswitch+sep1+refstr ;
1278      b = False ;
1279      break ;
1280    case SrcType::SKY:
1281      stype = atmcal+sep1+offstr+sep2+unspecified ;
1282      b = False ;
1283      break ;
1284    case SrcType::HOT:
1285      stype = atmcal+sep1+offstr+sep2+unspecified ;
1286      b = False ;
1287      break ;
1288    case SrcType::WARM:
1289      stype = atmcal+sep1+offstr+sep2+unspecified ;
1290      b = False ;
1291      break ;
1292    case SrcType::COLD:
1293      stype = atmcal+sep1+offstr+sep2+unspecified ;
1294      b = False ;
1295      break ;
1296    case SrcType::PONCAL:
1297      stype = atmcal+sep1+onstr+sep2+pswitch ;
1298      b = True ;
1299      break ;
1300    case SrcType::POFFCAL:
1301      stype = atmcal+sep1+offstr+sep2+pswitch ;
1302      b = False ;
1303      break ;
1304    case SrcType::NODCAL:
1305      stype = atmcal+sep1+onstr+sep2+nod ;
1306      b = True ;
1307      break ;
1308    case SrcType::FONCAL:
1309      stype = atmcal+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1310      b = True ;
1311      break ;
1312    case SrcType::FOFFCAL:
1313      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+refstr ;
1314      b = False ;
1315      break ;
1316    case SrcType::FSLO:
1317      stype = target+sep1+onstr+sep2+fswitch+sep1+ftlow ;
1318      b = True ;
1319      break ;
1320    case SrcType::FLOOFF:
1321      stype = target+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1322      b = False ;
1323      break ;
1324    case SrcType::FLOSKY:
1325      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1326      b = False ;
1327      break ;
1328    case SrcType::FLOHOT:
1329      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1330      b = False ;
1331      break ;
1332    case SrcType::FLOWARM:
1333      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1334      b = False ;
1335      break ;
1336    case SrcType::FLOCOLD:
1337      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1338      b = False ;
1339      break ;
1340    case SrcType::FSHI:
1341      stype = target+sep1+onstr+sep2+fswitch+sep1+fthigh ;
1342      b = True ;
1343      break ;
1344    case SrcType::FHIOFF:
1345      stype = target+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1346      b = False ;
1347      break ;
1348    case SrcType::FHISKY:
1349      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1350      b = False ;
1351      break ;
1352    case SrcType::FHIHOT:
1353      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1354      b = False ;
1355      break ;
1356    case SrcType::FHIWARM:
1357      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1358      b = False ;
1359      break ;
1360    case SrcType::FHICOLD:
1361      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1362      b = False ;
1363      break ;
1364    case SrcType::SIG:
1365      stype = target+sep1+onstr+sep2+unspecified ;
1366      b = True ;
1367      break ;
1368    case SrcType::REF:
1369      stype = target+sep1+offstr+sep2+unspecified ;
1370      b = False ;
1371      break ;
1372    default:
1373      stype = unspecified ;
1374      b = True ;
1375      break ;
1376    }
1377  }
1378  void initCorrProductTemplate()
1379  {
1380    Int n = 1 ;
1381    {
1382      Matrix<Int> c( 2, n, 0 ) ;
1383      corrProductTemplate[n] = c ;
1384    }
1385    n = 2 ;
1386    {
1387      Matrix<Int> c( 2, n, 0 ) ;
1388      c.column( 1 ) = 1 ;
1389      corrProductTemplate[n] = c ;
1390    }
1391    n = 4 ;
1392    {
1393      Matrix<Int> c( 2, n, 0 ) ;
1394      c( 0, 2 ) = 1 ;
1395      c( 0, 3 ) = 1 ;
1396      c( 1, 1 ) = 1 ;
1397      c( 1, 3 ) = 1 ;
1398      corrProductTemplate[n] = c ;
1399    }
1400  }
1401
1402  Table &ms;
1403  TableRow row;
1404  uInt rowidx;
1405  String fieldName;
1406  Int fieldId;
1407  Int srcId;
1408  Int defaultFieldId;
1409  Int spwId;
1410  Int feedId;
1411  Int subscan;
1412  CountedPtr<DataHolder> holder;
1413  String ptName;
1414  Bool useFloat;
1415  String poltype;
1416
1417  // MS subtables
1418  Table spwtab;
1419  Table statetab;
1420  Table ddtab;
1421  Table poltab;
1422  Table fieldtab;
1423  Table feedtab;
1424  Table potab;
1425
1426  // Scantable MAIN columns
1427  ROArrayColumn<Float> spectraCol;
1428  ROArrayColumn<Double> directionCol,scanRateCol,sourceDirectionCol;
1429  ROArrayColumn<uChar> flagtraCol;
1430  ROTableColumn tcalIdCol,intervalCol,flagRowCol,timeCol,freqIdCol,
1431    sourceNameCol,fieldNameCol;
1432
1433  // MS MAIN columns
1434  RecordFieldPtr<Int> dataDescIdRF,fieldIdRF,feed1RF,feed2RF,
1435    scanNumberRF,stateIdRF;
1436  RecordFieldPtr<Double> timeRF,timeCentroidRF,intervalRF,exposureRF;
1437
1438  // MS POINTING columns
1439  TableRow porow;
1440  RecordFieldPtr<Int> poNumPolyRF ;
1441  RecordFieldPtr<Double> poTimeRF,
1442    poTimeOriginRF,
1443    poIntervalRF ;
1444  RecordFieldPtr<String> poNameRF ;
1445  RecordFieldPtr< Matrix<Double> > poDirectionRF,
1446    poTargetRF ;
1447
1448  Vector<String> stateEntry;
1449  Matrix<Int> ddEntry;
1450  Matrix<Int> feedEntry;
1451  vector< Vector<Int> > polEntry;
1452  map<uInt,Bool> processedFreqId;
1453  map<uInt,Double> refpix;
1454  map<uInt,Double> refval;
1455  map<uInt,Double> increment;
1456  MFrequency::Types freqframe;
1457  Record srcRec;
1458  map< Int, Matrix<Int> > corrProductTemplate;
1459};
1460
1461class BaseMSSysCalVisitor: public TableVisitor {
1462  uInt lastRecordNo;
1463  uInt lastBeamNo, lastIfNo, lastPolNo;
1464  Double lastTime;
1465protected:
1466  const Table &table;
1467  uInt count;
1468public:
1469  BaseMSSysCalVisitor(const Table &table)
1470    : table(table)
1471  {
1472    count = 0;
1473  }
1474 
1475  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) { }
1476  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) { }
1477  virtual void enterIfNo(const uInt recordNo, uInt columnValue) { }
1478  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) { }
1479  virtual void enterPolNo(const uInt recordNo, uInt columnValue) { }
1480  virtual void leavePolNo(const uInt recordNo, uInt columnValue) { }
1481  virtual void enterTime(const uInt recordNo, Double columnValue) { }
1482  virtual void leaveTime(const uInt recordNo, Double columnValue) { }
1483
1484  virtual Bool visitRecord(const uInt recordNo,
1485                           const uInt beamNo,
1486                           const uInt ifNo,
1487                           const uInt polNo,
1488                           const Double time) { return True ;}
1489
1490  virtual Bool visit(Bool isFirst, const uInt recordNo,
1491                     const uInt nCols, void const *const colValues[]) {
1492    uInt beamNo, ifNo, polNo;
1493    Double time;
1494    { // prologue
1495      uInt i = 0;
1496      {
1497        const uInt *col = (const uInt *)colValues[i++];
1498        beamNo = col[recordNo];
1499      }
1500      {
1501        const uInt *col = (const uInt *)colValues[i++];
1502        ifNo = col[recordNo];
1503      }
1504      {
1505        const Double *col = (const Double *)colValues[i++];
1506        time = col[recordNo];
1507      }
1508      {
1509        const uInt *col = (const uInt *)colValues[i++];
1510        polNo = col[recordNo];
1511      }
1512      assert(nCols == i);
1513    }
1514
1515    if (isFirst) {
1516      enterBeamNo(recordNo, beamNo);
1517      enterIfNo(recordNo, ifNo);
1518      enterTime(recordNo, time);
1519      enterPolNo(recordNo, polNo);
1520    } else {
1521      if (lastBeamNo != beamNo) {
1522        leavePolNo(lastRecordNo, lastPolNo);
1523        leaveTime(lastRecordNo, lastTime);
1524        leaveIfNo(lastRecordNo, lastIfNo);
1525        leaveBeamNo(lastRecordNo, lastBeamNo);
1526
1527        enterBeamNo(recordNo, beamNo);
1528        enterIfNo(recordNo, ifNo);
1529        enterTime(recordNo, time);
1530        enterPolNo(recordNo, polNo);
1531      } else if (lastIfNo != ifNo) {
1532        leavePolNo(lastRecordNo, lastPolNo);
1533        leaveTime(lastRecordNo, lastTime);
1534        leaveIfNo(lastRecordNo, lastIfNo);
1535       
1536        enterIfNo(recordNo, ifNo);
1537        enterTime(recordNo, time);
1538        enterPolNo(recordNo, polNo);
1539      } else if (lastTime != time) {
1540        leavePolNo(lastRecordNo, lastPolNo);
1541        leaveTime(lastRecordNo, lastTime);
1542
1543        enterTime(recordNo, time);
1544        enterPolNo(recordNo, polNo);
1545      } else if (lastPolNo != polNo) {
1546        leavePolNo(lastRecordNo, lastPolNo);
1547        enterPolNo(recordNo, polNo);
1548      }
1549    }
1550    count++;
1551    Bool result = visitRecord(recordNo, beamNo, ifNo, polNo, time);
1552
1553    { // epilogue
1554      lastRecordNo = recordNo;
1555
1556      lastBeamNo = beamNo;
1557      lastIfNo = ifNo;
1558      lastPolNo = polNo;
1559      lastTime = time;
1560    }
1561    return result ;
1562  }
1563
1564  virtual void finish() {
1565    if (count > 0) {
1566      leavePolNo(lastRecordNo, lastPolNo);
1567      leaveTime(lastRecordNo, lastTime);
1568      leaveIfNo(lastRecordNo, lastIfNo);
1569      leaveBeamNo(lastRecordNo, lastBeamNo);
1570    }
1571  }
1572};
1573
1574class BaseTsysHolder
1575{
1576public:
1577  BaseTsysHolder( ROArrayColumn<Float> &tsysCol )
1578    : col( tsysCol ),
1579      nchan(0)
1580  {
1581    reset() ;
1582  }
1583  virtual ~BaseTsysHolder() {}
1584  virtual Array<Float> getTsys() = 0 ;
1585  void setNchan( uInt n ) { nchan = n ; }
1586  void appendTsys( uInt row )
1587  {
1588    Vector<Float> v = col( row ) ;
1589    uInt len = tsys.nrow() ;
1590    tsys.resize( len+1, nchan, True ) ;
1591    if ( v.nelements() == nchan )
1592      tsys.row( len ) = v ;
1593    else
1594      tsys.row( len ) = v[0] ;
1595  }
1596  void setTsys( uInt row, uInt idx )
1597  {
1598    if ( idx >= nrow() )
1599      appendTsys( row ) ;
1600    else {
1601      Vector<Float> v = col( row ) ;
1602      if ( v.nelements() == nchan )
1603        tsys.row( idx ) = v ;
1604      else
1605        tsys.row( idx ) = v[0] ;
1606    }
1607  }
1608  void reset()
1609  {
1610    tsys.resize() ;
1611  }
1612  uInt nrow() { return tsys.nrow() ; }
1613  Bool isEffective()
1614  {
1615    return ( !(tsys.empty()) && anyNE( tsys, (Float)1.0 ) ) ;
1616  }
1617  BaseTsysHolder &operator= ( const BaseTsysHolder &v )
1618  {
1619    if ( this != &v )
1620      tsys.assign( v.tsys ) ;
1621    return *this ;
1622  }
1623protected:
1624  ROArrayColumn<Float> col ;
1625  Matrix<Float> tsys ;
1626  uInt nchan ;
1627};
1628
1629class TsysHolder : public BaseTsysHolder
1630{
1631public:
1632  TsysHolder( ROArrayColumn<Float> &tsysCol )
1633    : BaseTsysHolder( tsysCol )
1634  {}
1635  virtual ~TsysHolder() {}
1636  virtual Array<Float> getTsys()
1637  {
1638    return tsys.column( 0 ) ;
1639  }
1640};
1641
1642class TsysSpectrumHolder : public BaseTsysHolder
1643{
1644public:
1645  TsysSpectrumHolder( ROArrayColumn<Float> &tsysCol )
1646    : BaseTsysHolder( tsysCol )
1647  {}
1648  virtual ~TsysSpectrumHolder() {}
1649  virtual Array<Float> getTsys()
1650  {
1651    return tsys ;
1652  }
1653};
1654
1655class BaseTcalProcessor
1656{
1657public:
1658  BaseTcalProcessor( ROArrayColumn<Float> &tcalCol )
1659    : col( tcalCol )
1660  {}
1661  virtual ~BaseTcalProcessor() {}
1662  void setTcalId( Vector<uInt> &tcalId ) { id.assign( tcalId ) ; }
1663  virtual Array<Float> getTcal() = 0 ;
1664protected:
1665  ROArrayColumn<Float> col ;
1666  Vector<uInt> id ;
1667};
1668
1669class TcalProcessor : public BaseTcalProcessor
1670{
1671public:
1672  TcalProcessor( ROArrayColumn<Float> &tcalCol )
1673    : BaseTcalProcessor( tcalCol )
1674  {}
1675  virtual ~TcalProcessor() {}
1676  virtual Array<Float> getTcal()
1677  {
1678    uInt npol = id.nelements() ;
1679    Vector<Float> tcal( npol ) ;
1680    for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
1681      tcal[ipol] = col( id[ipol] ).data()[0] ;
1682    //cout << "TcalProcessor: tcal = " << tcal << endl ;
1683    return tcal ;
1684  }
1685};
1686
1687class TcalSpectrumProcessor : public BaseTcalProcessor
1688{
1689public:
1690  TcalSpectrumProcessor( ROArrayColumn<Float> &tcalCol )
1691    : BaseTcalProcessor( tcalCol )
1692  {}
1693  virtual ~TcalSpectrumProcessor() {}
1694  virtual Array<Float> getTcal()
1695  {
1696    uInt npol = id.nelements() ;
1697    Vector<Float> tcal0 = col( 0 ) ;
1698    uInt nchan = tcal0.nelements() ;
1699    Matrix<Float> tcal( npol, nchan ) ;
1700    tcal.row( 0 ) = tcal0 ;
1701    for ( uInt ipol = 1 ; ipol < npol ; ipol++ )
1702      tcal.row( ipol ) = col( id[ipol] ) ;
1703    return tcal ;
1704  }
1705};
1706
1707class MSSysCalVisitor : public BaseMSSysCalVisitor
1708{
1709public:
1710  MSSysCalVisitor( const Table &from, Table &to )
1711    : BaseMSSysCalVisitor( from ),
1712      sctab( to ),
1713      rowidx( 0 )
1714  {
1715    scrow = TableRow( sctab ) ;
1716
1717    lastTcalId.resize() ;
1718    theTcalId.resize() ;
1719    startTime = 0.0 ;
1720    endTime = 0.0 ;
1721
1722    const TableRecord &keys = table.keywordSet() ;
1723    Table tcalTable = keys.asTable( "TCAL" ) ;
1724    tcalCol.attach( tcalTable, "TCAL" ) ;
1725    tsysCol.attach( table, "TSYS" ) ;
1726    tcalIdCol.attach( table, "TCAL_ID" ) ;
1727    intervalCol.attach( table, "INTERVAL" ) ;
1728    effectiveTcal.resize( tcalTable.nrow() ) ;
1729    for ( uInt irow = 0 ; irow < tcalTable.nrow() ; irow++ ) {
1730      if ( allEQ( tcalCol( irow ), (Float)1.0 ) )
1731        effectiveTcal[irow] = False ;
1732      else
1733        effectiveTcal[irow] = True ;
1734    }
1735   
1736    TableRecord &r = scrow.record() ;
1737    RecordFieldPtr<Int> antennaIdRF( r, "ANTENNA_ID" ) ;
1738    *antennaIdRF = 0 ;
1739    feedIdRF.attachToRecord( r, "FEED_ID" ) ;
1740    specWinIdRF.attachToRecord( r, "SPECTRAL_WINDOW_ID" ) ;
1741    timeRF.attachToRecord( r, "TIME" ) ;
1742    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1743    if ( r.isDefined( "TCAL" ) ) {
1744      tcalRF.attachToRecord( r, "TCAL" ) ;
1745      tcalProcessor = new TcalProcessor( tcalCol ) ;
1746    }
1747    else if ( r.isDefined( "TCAL_SPECTRUM" ) ) {
1748      tcalRF.attachToRecord( r, "TCAL_SPECTRUM" ) ;
1749      tcalProcessor = new TcalSpectrumProcessor( tcalCol ) ;
1750    }
1751    if ( r.isDefined( "TSYS" ) ) {
1752      tsysRF.attachToRecord( r, "TSYS" ) ;
1753      theTsys = new TsysHolder( tsysCol ) ;
1754      lastTsys = new TsysHolder( tsysCol ) ;
1755    }
1756    else {
1757      tsysRF.attachToRecord( r, "TSYS_SPECTRUM" ) ;
1758      theTsys = new TsysSpectrumHolder( tsysCol ) ;
1759      lastTsys = new TsysSpectrumHolder( tsysCol ) ;
1760    }
1761
1762  }
1763
1764  virtual void enterBeamNo(const uInt recordNo, uInt columnValue)
1765  {
1766    *feedIdRF = (Int)columnValue ;
1767  }
1768  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue)
1769  {
1770  }
1771  virtual void enterIfNo(const uInt recordNo, uInt columnValue)
1772  {
1773    //cout << "enterIfNo" << endl ;
1774    ROArrayColumn<Float> sp( table, "SPECTRA" ) ;
1775    uInt nchan = sp( recordNo ).nelements() ;
1776    theTsys->setNchan( nchan ) ;
1777    lastTsys->setNchan( nchan ) ;
1778
1779    *specWinIdRF = (Int)columnValue ;
1780  }
1781  virtual void leaveIfNo(const uInt recordNo, uInt columnValue)
1782  {
1783    //cout << "leaveIfNo" << endl ;
1784    post() ;
1785    lastTsys->reset() ;
1786    lastTcalId.resize() ;
1787    theTsys->reset() ;
1788    theTcalId.resize() ;
1789    startTime = 0.0 ;
1790    endTime = 0.0 ;
1791  }
1792  virtual void enterTime(const uInt recordNo, Double columnValue)
1793  {
1794    //cout << "enterTime" << endl ;
1795    interval = intervalCol.asdouble( recordNo ) ;
1796    // start time and end time
1797    if ( startTime == 0.0 ) {
1798      startTime = columnValue * 86400.0 - 0.5 * interval ;
1799      endTime = columnValue * 86400.0 + 0.5 * interval ;
1800    }
1801  }
1802  virtual void leaveTime(const uInt recordNo, Double columnValue)
1803  {
1804    //cout << "leaveTime" << endl ;
1805    if ( isUpdated() ) {
1806      post() ;
1807      *lastTsys = *theTsys ;
1808      lastTcalId = theTcalId ;
1809      theTsys->reset() ;
1810      theTcalId.resize() ;
1811      startTime = columnValue * 86400.0 - 0.5 * interval ;
1812      endTime = columnValue * 86400.0 + 0.5 * interval ;
1813    }
1814    else {
1815      endTime = columnValue * 86400.0 + 0.5 * interval ;
1816    }
1817  }
1818  virtual void enterPolNo(const uInt recordNo, uInt columnValue)
1819  {
1820    //cout << "enterPolNo" << endl ;
1821    Vector<Float> tsys = tsysCol( recordNo ) ;
1822    uInt tcalId = tcalIdCol.asuInt( recordNo ) ;
1823    // lastTsys.nrow() must be npol
1824    if ( lastTsys->nrow() == columnValue )
1825      lastTsys->appendTsys( recordNo ) ;
1826    // lastTcalId.nelements() must be npol
1827    if ( lastTcalId.nelements() == columnValue )
1828      appendTcalId( lastTcalId, tcalId, columnValue ) ;
1829    // theTsys.nrow() must be npol
1830    if ( theTsys->nrow() == columnValue )
1831      theTsys->appendTsys( recordNo ) ;
1832    else {
1833      theTsys->setTsys( recordNo, columnValue ) ;
1834    }
1835    if ( theTcalId.nelements() == columnValue )
1836      appendTcalId( theTcalId, tcalId, columnValue ) ;
1837    else
1838      setTcalId( theTcalId, tcalId, columnValue ) ;
1839  }
1840  virtual void leavePolNo( const uInt recordNo, uInt columnValue )
1841  {
1842  }
1843   
1844private:
1845  void appendTcalId( Vector<uInt> &v, uInt &elem, uInt &polId )
1846  {
1847    v.resize( polId+1, True ) ;
1848    v[polId] = elem ;
1849  }
1850  void setTcalId( Vector<uInt> &v, uInt &elem, uInt &polId )
1851  {
1852    v[polId] = elem ;
1853  }
1854  void post()
1855  {
1856    // check if given Tcal and Tsys is effective
1857    Bool isEffective = False ;
1858    for ( uInt ipol = 0 ; ipol < lastTcalId.nelements() ; ipol++ ) {
1859      if ( effectiveTcal[lastTcalId[ipol]] ) {
1860        isEffective = True ;
1861        break ;
1862      }
1863    }
1864    if ( !isEffective ) {
1865      if ( !(lastTsys->isEffective()) )
1866        return ;
1867    }
1868
1869    //cout << " interval: " << (endTime-startTime) << " lastTcalId = " << lastTcalId << endl ;
1870    Double midTime = 0.5 * ( startTime + endTime ) ;
1871    Double interval = endTime - startTime ;
1872    *timeRF = midTime ;
1873    *intervalRF = interval ;
1874    tcalProcessor->setTcalId( lastTcalId ) ;
1875    Array<Float> tcal = tcalProcessor->getTcal() ;
1876    tcalRF.define( tcal ) ;
1877    tsysRF.define( lastTsys->getTsys() ) ;
1878    sctab.addRow( 1, True ) ;
1879    scrow.put( rowidx ) ;
1880    rowidx++ ;
1881  }
1882 
1883  Bool isUpdated()
1884  {
1885    Bool ret = False ;
1886    ret = anyNE( theTcalId, lastTcalId ) ;
1887    if ( !ret )
1888      ret = anyNE( theTsys->getTsys(), lastTsys->getTsys() ) ;
1889    return ret ;
1890  }
1891
1892  Table &sctab;
1893  TableRow scrow;
1894  uInt rowidx;
1895
1896  Double startTime,endTime,interval;
1897 
1898  CountedPtr<BaseTsysHolder> lastTsys,theTsys;
1899  Vector<uInt> lastTcalId,theTcalId;
1900  CountedPtr<BaseTcalProcessor> tcalProcessor ;
1901  Vector<Bool> effectiveTcal;
1902
1903  RecordFieldPtr<Int> feedIdRF,specWinIdRF;
1904  RecordFieldPtr<Double> timeRF,intervalRF;
1905  RecordFieldPtr< Array<Float> > tcalRF,tsysRF;
1906
1907  ROArrayColumn<Float> tsysCol,tcalCol;
1908  ROTableColumn tcalIdCol,intervalCol;
1909};
1910
1911MSWriter::MSWriter(CountedPtr<Scantable> stable)
1912  : table_(stable),
1913    isWeather_(False),
1914    tcalSpec_(False),
1915    tsysSpec_(False),
1916    ptTabName_("")
1917{
1918  os_ = LogIO() ;
1919  os_.origin( LogOrigin( "MSWriter", "MSWriter()", WHERE ) ) ;
1920//   os_ << "MSWriter::MSWriter()" << LogIO::POST ;
1921
1922  // initialize writer
1923  init() ;
1924}
1925
1926MSWriter::~MSWriter()
1927{
1928  os_.origin( LogOrigin( "MSWriter", "~MSWriter()", WHERE ) ) ;
1929//   os_ << "MSWriter::~MSWriter()" << LogIO::POST ;
1930
1931  if ( mstable_ != 0 )
1932    delete mstable_ ;
1933}
1934
1935bool MSWriter::write(const string& filename, const Record& rec)
1936{
1937  os_.origin( LogOrigin( "MSWriter", "write()", WHERE ) ) ;
1938  //double startSec = mathutil::gettimeofday_sec() ;
1939  //os_ << "start MSWriter::write() startSec=" << startSec << LogIO::POST ;
1940
1941  filename_ = filename ;
1942
1943  // parsing MS options
1944  Bool overwrite = False ;
1945  if ( rec.isDefined( "ms" ) ) {
1946    Record msrec = rec.asRecord( "ms" ) ;
1947    if ( msrec.isDefined( "overwrite" ) ) {
1948      overwrite = msrec.asBool( "overwrite" ) ;
1949    }
1950  }
1951
1952  os_ << "Parsing MS options" << endl ;
1953  os_ << "   overwrite = " << overwrite << LogIO::POST ;
1954
1955  File file( filename_ ) ;
1956  if ( file.exists() ) {
1957    if ( overwrite ) {
1958      os_ << filename_ << " exists. Overwrite existing data... " << LogIO::POST ;
1959      if ( file.isRegular() ) RegularFile(file).remove() ;
1960      else if ( file.isDirectory() ) Directory(file).removeRecursive() ;
1961      else SymLink(file).remove() ;
1962    }
1963    else {
1964      os_ << LogIO::SEVERE << "ERROR: " << filename_ << " exists..." << LogIO::POST ;
1965      return False ;
1966    }
1967  }
1968
1969  // set up MS
1970  setupMS() ;
1971 
1972  // subtables
1973  // OBSERVATION
1974  fillObservation() ;
1975
1976  // ANTENNA
1977  fillAntenna() ;
1978
1979  // PROCESSOR
1980  fillProcessor() ;
1981
1982  // SOURCE
1983  fillSource() ;
1984
1985  // WEATHER
1986  if ( isWeather_ )
1987    fillWeather() ;
1988
1989  // SYSCAL
1990  fillSysCal() ;
1991
1992  /***
1993   * Start iteration using TableVisitor
1994   ***/
1995  {
1996    static const char *cols[] = {
1997      "FIELDNAME", "BEAMNO", "SCANNO", "IFNO", "SRCTYPE", "CYCLENO", "TIME",
1998      "POLNO",
1999      NULL
2000    };
2001    static const TypeManagerImpl<uInt> tmUInt;
2002    static const TypeManagerImpl<Int> tmInt;
2003    static const TypeManagerImpl<Double> tmDouble;
2004    static const TypeManagerImpl<String> tmString;
2005    static const TypeManager *const tms[] = {
2006      &tmString, &tmUInt, &tmUInt, &tmUInt, &tmInt, &tmUInt, &tmDouble, &tmUInt, NULL
2007    };
2008    //double t0 = mathutil::gettimeofday_sec() ;
2009    MSWriterVisitor myVisitor(table_->table(),*mstable_);
2010    //double t1 = mathutil::gettimeofday_sec() ;
2011    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2012    String dataColName = "FLOAT_DATA" ;
2013    if ( useData_ )
2014      dataColName = "DATA" ;
2015    myVisitor.dataColumnName( dataColName ) ;
2016    myVisitor.pointingTableName( ptTabName_ ) ;
2017    myVisitor.setSourceRecord( srcRec_ ) ;
2018    //double t2 = mathutil::gettimeofday_sec() ;
2019    traverseTable(table_->table(), cols, tms, &myVisitor);
2020    //double t3 = mathutil::gettimeofday_sec() ;
2021    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2022  }
2023  /***
2024   * End iteration using TableVisitor
2025   ***/
2026
2027  // ASDM tables
2028  const TableRecord &stKeys = table_->table().keywordSet() ;
2029  TableRecord &msKeys = mstable_->rwKeywordSet() ;
2030  uInt nfields = stKeys.nfields() ;
2031  for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) {
2032    String kname = stKeys.name( ifield ) ;
2033    if ( kname.find( "ASDM" ) != String::npos ) {
2034      String asdmpath = stKeys.asString( ifield ) ;
2035      os_ << "found ASDM table: " << asdmpath << LogIO::POST ;
2036      if ( Table::isReadable( asdmpath ) ) {
2037        Table newAsdmTab( asdmpath, Table::Old ) ;
2038        newAsdmTab.copy( filename_+"/"+kname, Table::New ) ;
2039        os_ << "add subtable: " << kname << LogIO::POST ;
2040        msKeys.defineTable( kname, Table( filename_+"/"+kname, Table::Old ) ) ;
2041      }
2042    }
2043  }
2044
2045  // replace POINTING table with original one if exists
2046  if ( ptTabName_ != "" ) {
2047    delete mstable_ ;
2048    mstable_ = 0 ;
2049    Table newPtTab( ptTabName_, Table::Old ) ;
2050    newPtTab.copy( filename_+"/POINTING", Table::New ) ;
2051  }
2052
2053  //double endSec = mathutil::gettimeofday_sec() ;
2054  //os_ << "end MSWriter::write() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2055
2056  os_ << "Exported data as MS" << LogIO::POST ;
2057
2058  return True ;
2059}
2060
2061void MSWriter::init()
2062{
2063//   os_.origin( LogOrigin( "MSWriter", "init()", WHERE ) ) ;
2064//   double startSec = mathutil::gettimeofday_sec() ;
2065//   os_ << "start MSWriter::init() startSec=" << startSec << LogIO::POST ;
2066 
2067  // access to scantable
2068  header_ = table_->getHeader() ;
2069
2070  // FLOAT_DATA? or DATA?
2071  if ( header_.npol > 2 ) {
2072    useFloatData_ = False ;
2073    useData_ = True ;
2074  }
2075  else {
2076    useFloatData_ = True ;
2077    useData_ = False ;
2078  }
2079
2080  // polarization type
2081  polType_ = header_.poltype ;
2082  if ( polType_ == "" )
2083    polType_ = "stokes" ;
2084  else if ( polType_.find( "linear" ) != String::npos )
2085    polType_ = "linear" ;
2086  else if ( polType_.find( "circular" ) != String::npos )
2087    polType_ = "circular" ;
2088  else if ( polType_.find( "stokes" ) != String::npos )
2089    polType_ = "stokes" ;
2090  else if ( polType_.find( "linpol" ) != String::npos )
2091    polType_ = "linpol" ;
2092  else
2093    polType_ = "notype" ;
2094
2095  // Check if some subtables are exists
2096  Bool isTcal = False ;
2097  if ( table_->tcal().table().nrow() != 0 ) {
2098    ROTableColumn col( table_->tcal().table(), "TCAL" ) ;
2099    if ( col.isDefined( 0 ) ) {
2100      os_ << "TCAL table exists: nrow=" << table_->tcal().table().nrow() << LogIO::POST ;
2101      isTcal = True ;
2102    }
2103    else {
2104      os_ << "No TCAL rows" << LogIO::POST ;
2105    }
2106  }
2107  else {
2108    os_ << "No TCAL rows" << LogIO::POST ;
2109  }
2110  if ( table_->weather().table().nrow() != 0 ) {
2111    ROTableColumn col( table_->weather().table(), "TEMPERATURE" ) ;
2112    if ( col.isDefined( 0 ) ) {
2113      os_ << "WEATHER table exists: nrow=" << table_->weather().table().nrow() << LogIO::POST ;
2114      isWeather_ =True ;
2115    }
2116    else {
2117      os_ << "No WEATHER rows" << LogIO::POST ;
2118    }
2119  }
2120  else {
2121    os_ << "No WEATHER rows" << LogIO::POST ;
2122  }
2123
2124  // Are TCAL_SPECTRUM and TSYS_SPECTRUM necessary?
2125  if ( header_.nchan != 1 ) {
2126    if ( isTcal ) {
2127      // examine TCAL subtable
2128      Table tcaltab = table_->tcal().table() ;
2129      ROArrayColumn<Float> tcalCol( tcaltab, "TCAL" ) ;
2130      for ( uInt irow = 0 ; irow < tcaltab.nrow() ; irow++ ) {
2131        if ( tcalCol( irow ).size() != 1 )
2132          tcalSpec_ = True ;
2133      }
2134    }
2135    // examine spectral data
2136    TableIterator iter0( table_->table(), "IFNO" ) ;
2137    while( !iter0.pastEnd() ) {
2138      Table t0( iter0.table() ) ;
2139      ROArrayColumn<Float> sharedFloatArrCol( t0, "SPECTRA" ) ;
2140      uInt len = sharedFloatArrCol( 0 ).size() ;
2141      if ( len != 1 ) {
2142        sharedFloatArrCol.attach( t0, "TSYS" ) ;
2143        if ( sharedFloatArrCol( 0 ).size() != 1 )
2144          tsysSpec_ = True ;
2145      }
2146      iter0.next() ;
2147    }
2148  }
2149
2150  // check if reference for POINTING table exists
2151  const TableRecord &rec = table_->table().keywordSet() ;
2152  if ( rec.isDefined( "POINTING" ) ) {
2153    ptTabName_ = rec.asString( "POINTING" ) ;
2154    if ( !Table::isReadable( ptTabName_ ) ) {
2155      ptTabName_ = "" ;
2156    }
2157  }
2158
2159//   double endSec = mathutil::gettimeofday_sec() ;
2160//   os_ << "end MSWriter::init() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2161}
2162
2163void MSWriter::setupMS()
2164{
2165//   os_.origin( LogOrigin( "MSWriter", "setupMS()", WHERE ) ) ;
2166//   double startSec = mathutil::gettimeofday_sec() ;
2167//   os_ << "start MSWriter::setupMS() startSec=" << startSec << LogIO::POST ;
2168 
2169  String dunit = table_->getHeader().fluxunit ;
2170
2171  TableDesc msDesc = MeasurementSet::requiredTableDesc() ;
2172  if ( useFloatData_ )
2173    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::FLOAT_DATA, 2 ) ;
2174  else if ( useData_ )
2175    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::DATA, 2 ) ;
2176
2177  SetupNewTable newtab( filename_, msDesc, Table::New ) ;
2178
2179  mstable_ = new MeasurementSet( newtab ) ;
2180
2181  TableColumn col ;
2182  if ( useFloatData_ )
2183    col.attach( *mstable_, "FLOAT_DATA" ) ;
2184  else if ( useData_ )
2185    col.attach( *mstable_, "DATA" ) ;
2186  col.rwKeywordSet().define( "UNIT", dunit ) ;
2187
2188  // create subtables
2189  TableDesc antennaDesc = MSAntenna::requiredTableDesc() ;
2190  SetupNewTable antennaTab( mstable_->antennaTableName(), antennaDesc, Table::New ) ;
2191  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::ANTENNA ), Table( antennaTab ) ) ;
2192
2193  TableDesc dataDescDesc = MSDataDescription::requiredTableDesc() ;
2194  SetupNewTable dataDescTab( mstable_->dataDescriptionTableName(), dataDescDesc, Table::New ) ;
2195  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DATA_DESCRIPTION ), Table( dataDescTab ) ) ;
2196
2197  TableDesc dopplerDesc = MSDoppler::requiredTableDesc() ;
2198  SetupNewTable dopplerTab( mstable_->dopplerTableName(), dopplerDesc, Table::New ) ;
2199  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DOPPLER ), Table( dopplerTab ) ) ;
2200
2201  TableDesc feedDesc = MSFeed::requiredTableDesc() ;
2202  SetupNewTable feedTab( mstable_->feedTableName(), feedDesc, Table::New ) ;
2203  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FEED ), Table( feedTab ) ) ;
2204
2205  TableDesc fieldDesc = MSField::requiredTableDesc() ;
2206  SetupNewTable fieldTab( mstable_->fieldTableName(), fieldDesc, Table::New ) ;
2207  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FIELD ), Table( fieldTab ) ) ;
2208
2209  TableDesc flagCmdDesc = MSFlagCmd::requiredTableDesc() ;
2210  SetupNewTable flagCmdTab( mstable_->flagCmdTableName(), flagCmdDesc, Table::New ) ;
2211  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FLAG_CMD ), Table( flagCmdTab ) ) ;
2212
2213  TableDesc freqOffsetDesc = MSFreqOffset::requiredTableDesc() ;
2214  SetupNewTable freqOffsetTab( mstable_->freqOffsetTableName(), freqOffsetDesc, Table::New ) ;
2215  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FREQ_OFFSET ), Table( freqOffsetTab ) ) ;
2216
2217  TableDesc historyDesc = MSHistory::requiredTableDesc() ;
2218  SetupNewTable historyTab( mstable_->historyTableName(), historyDesc, Table::New ) ;
2219  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::HISTORY ), Table( historyTab ) ) ;
2220
2221  TableDesc observationDesc = MSObservation::requiredTableDesc() ;
2222  SetupNewTable observationTab( mstable_->observationTableName(), observationDesc, Table::New ) ;
2223  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::OBSERVATION ), Table( observationTab ) ) ;
2224
2225  TableDesc pointingDesc = MSPointing::requiredTableDesc() ;
2226  SetupNewTable pointingTab( mstable_->pointingTableName(), pointingDesc, Table::New ) ;
2227  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POINTING ), Table( pointingTab ) ) ;
2228
2229  TableDesc polarizationDesc = MSPolarization::requiredTableDesc() ;
2230  SetupNewTable polarizationTab( mstable_->polarizationTableName(), polarizationDesc, Table::New ) ;
2231  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POLARIZATION ), Table( polarizationTab ) ) ;
2232
2233  TableDesc processorDesc = MSProcessor::requiredTableDesc() ;
2234  SetupNewTable processorTab( mstable_->processorTableName(), processorDesc, Table::New ) ;
2235  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::PROCESSOR ), Table( processorTab ) ) ;
2236
2237  TableDesc sourceDesc = MSSource::requiredTableDesc() ;
2238  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::TRANSITION, 1 ) ;
2239  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::REST_FREQUENCY, 1 ) ;
2240  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::SYSVEL, 1 ) ;
2241  SetupNewTable sourceTab( mstable_->sourceTableName(), sourceDesc, Table::New ) ;
2242  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SOURCE ), Table( sourceTab ) ) ;
2243
2244  TableDesc spwDesc = MSSpectralWindow::requiredTableDesc() ;
2245  SetupNewTable spwTab( mstable_->spectralWindowTableName(), spwDesc, Table::New ) ;
2246  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SPECTRAL_WINDOW ), Table( spwTab ) ) ;
2247
2248  TableDesc stateDesc = MSState::requiredTableDesc() ;
2249  SetupNewTable stateTab( mstable_->stateTableName(), stateDesc, Table::New ) ;
2250  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::STATE ), Table( stateTab ) ) ;
2251
2252  TableDesc sysCalDesc = MSSysCal::requiredTableDesc() ;
2253  if ( tcalSpec_ )
2254    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL_SPECTRUM, 2 ) ;
2255  else
2256    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL, 1 ) ;
2257  if ( tsysSpec_ )
2258    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS_SPECTRUM, 2 ) ;
2259  else
2260    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS, 1 ) ;
2261  SetupNewTable sysCalTab( mstable_->sysCalTableName(), sysCalDesc, Table::New ) ;
2262  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SYSCAL ), Table( sysCalTab ) ) ;
2263
2264  TableDesc weatherDesc = MSWeather::requiredTableDesc() ;
2265  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::TEMPERATURE ) ;
2266  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::PRESSURE ) ;
2267  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::REL_HUMIDITY ) ;
2268  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_SPEED ) ;
2269  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_DIRECTION ) ;
2270  SetupNewTable weatherTab( mstable_->weatherTableName(), weatherDesc, Table::New ) ;
2271  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::WEATHER ), Table( weatherTab ) ) ;
2272
2273  mstable_->initRefs() ;
2274
2275//   double endSec = mathutil::gettimeofday_sec() ;
2276//   os_ << "end MSWriter::setupMS() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2277}
2278
2279void MSWriter::fillObservation()
2280{
2281  //double startSec = mathutil::gettimeofday_sec() ;
2282  //os_ << "start MSWriter::fillObservation() startSec=" << startSec << LogIO::POST ;
2283
2284  // only 1 row
2285  mstable_->observation().addRow( 1, True ) ;
2286  MSObservationColumns msObsCols( mstable_->observation() ) ;
2287  msObsCols.observer().put( 0, header_.observer ) ;
2288  // tentatively put antennaname (from ANTENNA subtable)
2289  String hAntennaName = header_.antennaname ;
2290  String::size_type pos = hAntennaName.find( "//" ) ;
2291  String telescopeName ;
2292  if ( pos != String::npos ) {
2293    telescopeName = hAntennaName.substr( 0, pos ) ;
2294  }
2295  else {
2296    pos = hAntennaName.find( "@" ) ;
2297    telescopeName = hAntennaName.substr( 0, pos ) ;
2298  }
2299//   os_ << "telescopeName = " << telescopeName << LogIO::POST ;
2300  msObsCols.telescopeName().put( 0, telescopeName ) ;
2301  msObsCols.project().put( 0, header_.project ) ;
2302  //ScalarMeasColumn<MEpoch> timeCol( table_->table().sort("TIME"), "TIME" ) ;
2303  Table sortedtable = table_->table().sort("TIME") ;
2304  ScalarMeasColumn<MEpoch> timeCol( sortedtable, "TIME" ) ;
2305  Vector<MEpoch> trange( 2 ) ;
2306  trange[0] = timeCol( 0 ) ;
2307  trange[1] = timeCol( table_->nrow()-1 ) ;
2308  msObsCols.timeRangeMeas().put( 0, trange ) ;
2309
2310  //double endSec = mathutil::gettimeofday_sec() ;
2311  //os_ << "end MSWriter::fillObservation() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2312}
2313
2314void MSWriter::antennaProperty( String &name, String &m, String &t, Double &d )
2315{
2316  name.upcase() ;
2317 
2318  m = "ALT-AZ" ;
2319  t = "GROUND-BASED" ;
2320  if ( name.matches( Regex( "DV[0-9]+$" ) )
2321       || name.matches( Regex( "DA[0-9]+$" ) )
2322       || name.matches( Regex( "PM[0-9]+$" ) ) )
2323    d = 12.0 ;
2324  else if ( name.matches( Regex( "CM[0-9]+$" ) ) )
2325    d = 7.0 ;
2326  else if ( name.contains( "GBT" ) )
2327    d = 104.9 ;
2328  else if ( name.contains( "MOPRA" ) )
2329    d = 22.0 ;
2330  else if ( name.contains( "PKS" ) || name.contains( "PARKS" ) )
2331    d = 64.0 ;
2332  else if ( name.contains( "TIDBINBILLA" ) )
2333    d = 70.0 ;
2334  else if ( name.contains( "CEDUNA" ) )
2335    d = 30.0 ;
2336  else if ( name.contains( "HOBART" ) )
2337    d = 26.0 ;
2338  else if ( name.contains( "APEX" ) )
2339    d = 12.0 ;
2340  else if ( name.contains( "ASTE" ) )
2341    d = 10.0 ;
2342  else if ( name.contains( "NRO" ) )
2343    d = 45.0 ;
2344  else
2345    d = 1.0 ;
2346}
2347
2348void MSWriter::fillAntenna()
2349{
2350  //double startSec = mathutil::gettimeofday_sec() ;
2351  //os_ << "start MSWriter::fillAntenna() startSec=" << startSec << LogIO::POST ;
2352
2353  // only 1 row
2354  Table anttab = mstable_->antenna() ;
2355  anttab.addRow( 1, True ) ;
2356 
2357  Table &table = table_->table() ;
2358  const TableRecord &keys = table.keywordSet() ;
2359  String hAntName = keys.asString( "AntennaName" ) ;
2360  String::size_type pos = hAntName.find( "//" ) ;
2361  String antennaName ;
2362  String stationName ;
2363  if ( pos != String::npos ) {
2364    stationName = hAntName.substr( 0, pos ) ;
2365    hAntName = hAntName.substr( pos+2 ) ;
2366  }
2367  pos = hAntName.find( "@" ) ;
2368  if ( pos != String::npos ) {
2369    antennaName = hAntName.substr( 0, pos ) ;
2370    stationName = hAntName.substr( pos+1 ) ;
2371  }
2372  else {
2373    antennaName = hAntName ;
2374  }
2375  Vector<Double> antpos = keys.asArrayDouble( "AntennaPosition" ) ;
2376 
2377  String mount, atype ;
2378  Double diameter ;
2379  antennaProperty( antennaName, mount, atype, diameter ) ;
2380 
2381  TableRow tr( anttab ) ;
2382  TableRecord &r = tr.record() ;
2383  RecordFieldPtr<String> nameRF( r, "NAME" ) ;
2384  RecordFieldPtr<String> stationRF( r, "STATION" ) ;
2385  RecordFieldPtr<String> mountRF( r, "MOUNT" ) ;
2386  RecordFieldPtr<String> typeRF( r, "TYPE" ) ;
2387  RecordFieldPtr<Double> dishDiameterRF( r, "DISH_DIAMETER" ) ;
2388  RecordFieldPtr< Vector<Double> > positionRF( r, "POSITION" ) ;
2389  *nameRF = antennaName ;
2390  *mountRF = mount ;
2391  *typeRF = atype ;
2392  *dishDiameterRF = diameter ;
2393  *positionRF = antpos ;
2394  *stationRF = stationName ;
2395 
2396  tr.put( 0 ) ;
2397
2398  //double endSec = mathutil::gettimeofday_sec() ;
2399  //os_ << "end MSWriter::fillAntenna() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2400}
2401 
2402void MSWriter::fillProcessor()
2403{
2404//   double startSec = mathutil::gettimeofday_sec() ;
2405//   os_ << "start MSWriter::fillProcessor() startSec=" << startSec << LogIO::POST ;
2406 
2407  // only add empty 1 row
2408  MSProcessor msProc = mstable_->processor() ;
2409  msProc.addRow( 1, True ) ;
2410
2411//   double endSec = mathutil::gettimeofday_sec() ;
2412//   os_ << "end MSWriter::fillProcessor() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2413}
2414
2415void MSWriter::fillSource()
2416{
2417//   double startSec = mathutil::gettimeofday_sec() ;
2418//   os_ << "start MSWriter::fillSource() startSec=" << startSec << LogIO::POST ;
2419 
2420  // access to MS SOURCE subtable
2421  MSSource msSrc = mstable_->source() ;
2422
2423  // access to MOLECULE subtable
2424  STMolecules stm = table_->molecules() ;
2425
2426  Int srcId = 0 ;
2427  Vector<Double> restFreq ;
2428  Vector<String> molName ;
2429  Vector<String> fMolName ;
2430
2431  // row based
2432  TableRow row( msSrc ) ;
2433  TableRecord &rec = row.record() ;
2434  RecordFieldPtr<Int> srcidRF( rec, "SOURCE_ID" ) ;
2435  RecordFieldPtr<String> nameRF( rec, "NAME" ) ;
2436  RecordFieldPtr< Array<Double> > srcpmRF( rec, "PROPER_MOTION" ) ;
2437  RecordFieldPtr< Array<Double> > srcdirRF( rec, "DIRECTION" ) ;
2438  RecordFieldPtr<Int> numlineRF( rec, "NUM_LINES" ) ;
2439  RecordFieldPtr< Array<Double> > restfreqRF( rec, "REST_FREQUENCY" ) ;
2440  RecordFieldPtr< Array<Double> > sysvelRF( rec, "SYSVEL" ) ;
2441  RecordFieldPtr< Array<String> > transitionRF( rec, "TRANSITION" ) ;
2442  RecordFieldPtr<Double> timeRF( rec, "TIME" ) ;
2443  RecordFieldPtr<Double> intervalRF( rec, "INTERVAL" ) ;
2444  RecordFieldPtr<Int> spwidRF( rec, "SPECTRAL_WINDOW_ID" ) ;
2445
2446  //
2447  // ITERATION: SRCNAME
2448  //
2449  TableIterator iter0( table_->table(), "SRCNAME" ) ;
2450  while( !iter0.pastEnd() ) {
2451    //Table t0( iter0.table() ) ;
2452    Table t0 =  iter0.table()  ;
2453
2454    // get necessary information
2455    ROScalarColumn<String> srcNameCol( t0, "SRCNAME" ) ;
2456    String srcName = srcNameCol( 0 ) ;
2457    ROArrayColumn<Double> sharedDArrRCol( t0, "SRCPROPERMOTION" ) ;
2458    Vector<Double> srcPM = sharedDArrRCol( 0 ) ;
2459    sharedDArrRCol.attach( t0, "SRCDIRECTION" ) ;
2460    Vector<Double> srcDir = sharedDArrRCol( 0 ) ;
2461    ROScalarColumn<Double> srcVelCol( t0, "SRCVELOCITY" ) ;
2462    Double srcVel = srcVelCol( 0 ) ;
2463    srcRec_.define( srcName, srcId ) ;
2464
2465    // NAME
2466    *nameRF = srcName ;
2467
2468    // SOURCE_ID
2469    *srcidRF = srcId ;
2470
2471    // PROPER_MOTION
2472    *srcpmRF = srcPM ;
2473   
2474    // DIRECTION
2475    *srcdirRF = srcDir ;
2476
2477    //
2478    // ITERATION: MOLECULE_ID
2479    //
2480    TableIterator iter1( t0, "MOLECULE_ID" ) ;
2481    while( !iter1.pastEnd() ) {
2482      //Table t1( iter1.table() ) ;
2483      Table t1 = iter1.table() ;
2484
2485      // get necessary information
2486      ROScalarColumn<uInt> molIdCol( t1, "MOLECULE_ID" ) ;
2487      uInt molId = molIdCol( 0 ) ;
2488      stm.getEntry( restFreq, molName, fMolName, molId ) ;
2489
2490      uInt numFreq = restFreq.size() ;
2491     
2492      // NUM_LINES
2493      *numlineRF = numFreq ;
2494
2495      // REST_FREQUENCY
2496      *restfreqRF = restFreq ;
2497
2498      // TRANSITION
2499      //*transitionRF = fMolName ;
2500      Vector<String> transition ;
2501      if ( fMolName.size() != 0 ) {
2502        transition = fMolName ;
2503      }
2504      else if ( molName.size() != 0 ) {
2505        transition = molName ;
2506      }
2507      else {
2508        transition.resize( numFreq ) ;
2509        transition = "" ;
2510      }
2511      *transitionRF = transition ;
2512
2513      // SYSVEL
2514      Vector<Double> sysvelArr( numFreq, srcVel ) ;
2515      *sysvelRF = sysvelArr ;
2516
2517      //
2518      // ITERATION: IFNO
2519      //
2520      TableIterator iter2( t1, "IFNO" ) ;
2521      while( !iter2.pastEnd() ) {
2522        //Table t2( iter2.table() ) ;
2523        Table t2 = iter2.table() ;
2524        uInt nrow = msSrc.nrow() ;
2525
2526        // get necessary information
2527        ROScalarColumn<uInt> ifNoCol( t2, "IFNO" ) ;
2528        uInt ifno = ifNoCol( 0 ) ; // IFNO = SPECTRAL_WINDOW_ID
2529        Double midTime ;
2530        Double interval ;
2531        getValidTimeRange( midTime, interval, t2 ) ;
2532
2533        // fill SPECTRAL_WINDOW_ID
2534        *spwidRF = ifno ;
2535
2536        // fill TIME, INTERVAL
2537        *timeRF = midTime ;
2538        *intervalRF = interval ;
2539
2540        // add row
2541        msSrc.addRow( 1, True ) ;
2542        row.put( nrow ) ;
2543
2544        iter2.next() ;
2545      }
2546
2547      iter1.next() ;
2548    }
2549
2550    // increment srcId if SRCNAME changed
2551    srcId++ ;
2552
2553    iter0.next() ;
2554  }
2555
2556//   double endSec = mathutil::gettimeofday_sec() ;
2557//   os_ << "end MSWriter::fillSource() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2558}
2559
2560void MSWriter::fillWeather()
2561{
2562//   double startSec = mathutil::gettimeofday_sec() ;
2563//   os_ << "start MSWriter::fillWeather() startSec=" << startSec << LogIO::POST ;
2564
2565  // access to MS WEATHER subtable
2566  MSWeather msw = mstable_->weather() ;
2567
2568  // access to WEATHER subtable
2569  Table stw = table_->weather().table() ;
2570  uInt nrow = stw.nrow() ;
2571
2572  if ( nrow == 0 )
2573    return ;
2574
2575  msw.addRow( nrow, True ) ;
2576  MSWeatherColumns mswCols( msw ) ;
2577
2578  // ANTENNA_ID is always 0
2579  Vector<Int> antIdArr( nrow, 0 ) ;
2580  mswCols.antennaId().putColumn( antIdArr ) ;
2581
2582  // fill weather status
2583  ROScalarColumn<Float> sharedFloatCol( stw, "TEMPERATURE" ) ;
2584  mswCols.temperature().putColumn( sharedFloatCol ) ;
2585  sharedFloatCol.attach( stw, "PRESSURE" ) ;
2586  mswCols.pressure().putColumn( sharedFloatCol ) ;
2587  sharedFloatCol.attach( stw, "HUMIDITY" ) ;
2588  mswCols.relHumidity().putColumn( sharedFloatCol ) ;
2589  sharedFloatCol.attach( stw, "WINDSPEED" ) ;
2590  mswCols.windSpeed().putColumn( sharedFloatCol ) ;
2591  sharedFloatCol.attach( stw, "WINDAZ" ) ;
2592  mswCols.windDirection().putColumn( sharedFloatCol ) ;
2593
2594  // fill TIME and INTERVAL
2595  Double midTime ;
2596  Double interval ;
2597  Vector<Double> intervalArr( nrow, 0.0 ) ;
2598  TableIterator iter( table_->table(), "WEATHER_ID" ) ;
2599  while( !iter.pastEnd() ) {
2600    //Table tab( iter.table() ) ;
2601    Table tab = iter.table() ;
2602
2603    ROScalarColumn<uInt> widCol( tab, "WEATHER_ID" ) ;
2604    uInt wid = widCol( 0 ) ;
2605
2606    getValidTimeRange( midTime, interval, tab ) ;
2607    mswCols.time().put( wid, midTime ) ;
2608    intervalArr[wid] = interval ;
2609
2610    iter.next() ;
2611  }
2612  mswCols.interval().putColumn( intervalArr ) ;
2613
2614//   double endSec = mathutil::gettimeofday_sec() ;
2615//   os_ << "end MSWriter::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2616}
2617
2618void MSWriter::fillSysCal()
2619{
2620  Table mssc = mstable_->sysCal() ;
2621
2622  {
2623    static const char *cols[] = {
2624      "BEAMNO", "IFNO", "TIME", "POLNO",
2625      NULL
2626    };
2627    static const TypeManagerImpl<uInt> tmUInt;
2628    static const TypeManagerImpl<Double> tmDouble;
2629    static const TypeManager *const tms[] = {
2630      &tmUInt, &tmUInt, &tmDouble, &tmUInt, NULL
2631    };
2632    //double t0 = mathutil::gettimeofday_sec() ;
2633    MSSysCalVisitor myVisitor(table_->table(),mssc);
2634    //double t1 = mathutil::gettimeofday_sec() ;
2635    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2636    traverseTable(table_->table(), cols, tms, &myVisitor);
2637    //double t3 = mathutil::gettimeofday_sec() ;
2638    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2639  }
2640 
2641}
2642
2643void MSWriter::getValidTimeRange( Double &me, Double &interval, Table &tab )
2644{
2645//   double startSec = mathutil::gettimeofday_sec() ;
2646//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2647
2648  // sort table
2649  //Table stab = tab.sort( "TIME" ) ;
2650
2651  ROScalarColumn<Double> timeCol( tab, "TIME" ) ;
2652  Vector<Double> timeArr = timeCol.getColumn() ;
2653  Double minTime ;
2654  Double maxTime ;
2655  minMax( minTime, maxTime, timeArr ) ;
2656  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2657  // unit for TIME
2658  // Scantable: "d"
2659  // MS: "s"
2660  me = midTime ;
2661  interval = ( maxTime - minTime ) * 86400.0 ;
2662
2663//   double endSec = mathutil::gettimeofday_sec() ;
2664//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2665}
2666
2667void MSWriter::getValidTimeRange( Double &me, Double &interval, Vector<Double> &atime, Vector<Double> &ainterval )
2668{
2669//   double startSec = mathutil::gettimeofday_sec() ;
2670//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2671
2672  // sort table
2673  //Table stab = tab.sort( "TIME" ) ;
2674
2675  Double minTime ;
2676  Double maxTime ;
2677  minMax( minTime, maxTime, atime ) ;
2678  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2679  // unit for TIME
2680  // Scantable: "d"
2681  // MS: "s"
2682  me = midTime ;
2683  interval = ( maxTime - minTime ) * 86400.0 + mean( ainterval ) ;
2684
2685//   double endSec = mathutil::gettimeofday_sec() ;
2686//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2687}
2688
2689}
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