1 | from asap.asapplotter import asapplotter
|
---|
2 | from asap.logging import asaplog, asaplog_post_dec
|
---|
3 |
|
---|
4 | from asap.parameters import rcParams
|
---|
5 | from asap.selector import selector
|
---|
6 | from asap.scantable import scantable
|
---|
7 | import matplotlib.axes
|
---|
8 | from matplotlib.font_manager import FontProperties
|
---|
9 | from matplotlib.text import Text
|
---|
10 |
|
---|
11 | class flagplotter(asapplotter):
|
---|
12 | """
|
---|
13 | The flag plotter
|
---|
14 | Only row based panneling is allowed.
|
---|
15 |
|
---|
16 | Example:
|
---|
17 | scan = asa p.scantable(filename='your_filename',average=False)
|
---|
18 | guiflagger = asap.flagplotter(visible=True)
|
---|
19 | guiflagger.plot(scan)
|
---|
20 | ### flag/Unflag data graphically.
|
---|
21 | guiflagger.save_data(name='flagged_file.asap',format='ASAP')
|
---|
22 |
|
---|
23 | NOTICE:
|
---|
24 | The flagged data is not saved until you explicitly run scantable.save
|
---|
25 | """
|
---|
26 | def __init__(self, visible=None, **kwargs):
|
---|
27 | self._scan = None
|
---|
28 | asapplotter.__init__(self,visible=visible, **kwargs)
|
---|
29 | self._assert_plotter(action='reload')
|
---|
30 | self._plotter._set_window_title('Flag Plotter')
|
---|
31 | self._panelling = 'r'
|
---|
32 | self.set_stacking('scan')
|
---|
33 | self._ismodified = False
|
---|
34 |
|
---|
35 | def _new_custombar(self):
|
---|
36 | backend = matplotlib.get_backend()
|
---|
37 | # Flag plotter relys on supported GUI backends
|
---|
38 | if not self._visible:
|
---|
39 | asaplog.push("GUI backend is not available")
|
---|
40 | asaplog.post("ERROR")
|
---|
41 | elif backend == "TkAgg":
|
---|
42 | from asap.customgui_tkagg import CustomFlagToolbarTkAgg
|
---|
43 | return CustomFlagToolbarTkAgg(self)
|
---|
44 | elif backend == "Qt4Agg":
|
---|
45 | from asap.customgui_qt4agg import CustomFlagToolbarQT4Agg
|
---|
46 | return CustomFlagToolbarQT4Agg(self)
|
---|
47 | else:
|
---|
48 | asaplog.push("Unsupported backend for interactive flagging. Use either TkAgg or PyQt4Agg")
|
---|
49 | asaplog.post("ERROR")
|
---|
50 |
|
---|
51 | @asaplog_post_dec
|
---|
52 | def _invalid_func(self, name):
|
---|
53 | msg = "Invalid function 'flagplotter."+name+"'"
|
---|
54 | #raise AttributeError(msg)
|
---|
55 | asaplog.push(msg)
|
---|
56 | asaplog.post('ERROR')
|
---|
57 |
|
---|
58 | def set_panelling(self,which='r'):
|
---|
59 | """ This function is not available for the class flagplotter """
|
---|
60 | if which.lower().startswith('r'):
|
---|
61 | return
|
---|
62 | msg = "Pannel setting is fixed to row mode in 'flagplotter'"
|
---|
63 | asaplog.push(msg)
|
---|
64 | asaplog.post('ERROR')
|
---|
65 | self._panelling = 'r'
|
---|
66 |
|
---|
67 | def plotazel(self,*args,**kwargs):
|
---|
68 | """ This function is not available for the class flagplotter """
|
---|
69 | self._invalid_func(name='plotazel')
|
---|
70 |
|
---|
71 | def plotpointing(self,*args,**kwargs):
|
---|
72 | """ This function is not available for the class flagplotter """
|
---|
73 | self._invalid_func(name='plotpointing')
|
---|
74 |
|
---|
75 | def plottp(self,*args,**kwargs):
|
---|
76 | """ This function is not available for the class flagplotter """
|
---|
77 | self._invalid_func(name='plottp')
|
---|
78 |
|
---|
79 | def save_data(self, name=None, format=None, overwrite=False):
|
---|
80 | """
|
---|
81 | Store the plotted scantable on disk.
|
---|
82 | This function simply redirects call to scantable.save()
|
---|
83 |
|
---|
84 | Parameters:
|
---|
85 |
|
---|
86 | name: the name of the outputfile. For format "ASCII"
|
---|
87 | this is the root file name (data in 'name'.txt
|
---|
88 | and header in 'name'_header.txt)
|
---|
89 |
|
---|
90 | format: an optional file format. Default is ASAP.
|
---|
91 | Allowed are:
|
---|
92 | * 'ASAP' (save as ASAP [aips++] Table),
|
---|
93 | * 'SDFITS' (save as SDFITS file)
|
---|
94 | * 'ASCII' (saves as ascii text file)
|
---|
95 | * 'MS2' (saves as an casacore MeasurementSet V2)
|
---|
96 | * 'FITS' (save as image FITS - not readable by class)
|
---|
97 | * 'CLASS' (save as FITS readable by CLASS)
|
---|
98 |
|
---|
99 | overwrite: If the file should be overwritten if it exists.
|
---|
100 | The default False is to return with warning
|
---|
101 | without writing the output. USE WITH CARE.
|
---|
102 | """
|
---|
103 | if not self._data:
|
---|
104 | raise RuntimeError("No scantable has been set yet.")
|
---|
105 | # simply calls scantable.save
|
---|
106 | self._data.save(name,format,overwrite)
|
---|
107 |
|
---|
108 | def set_data(self, scan, refresh=True):
|
---|
109 | if self._is_new_scan(scan):
|
---|
110 | self._ismodified = False
|
---|
111 | asapplotter.set_data(self, scan, refresh)
|
---|
112 | set_data.__doc__ = asapplotter.set_data.__doc__
|
---|
113 |
|
---|
114 | @asaplog_post_dec
|
---|
115 | def plot(self, scan=None):
|
---|
116 | if self._is_new_scan(scan):
|
---|
117 | self._ismodified = False
|
---|
118 | asapplotter.plot(self,scan)
|
---|
119 | plot.__doc__ = asapplotter.plot.__doc__
|
---|
120 |
|
---|
121 | @asaplog_post_dec
|
---|
122 | def _plot(self, scan):
|
---|
123 | asapplotter._plot(self,scan)
|
---|
124 | # rescale x-range of subplots 5% margins
|
---|
125 | ganged = (self._plotter.axes._sharex != None)
|
---|
126 | if ganged:
|
---|
127 | np = 1
|
---|
128 | else:
|
---|
129 | np = len(self._plotter.subplots)
|
---|
130 | for ip in xrange(np):
|
---|
131 | ax = self._plotter.subplots[ip]['axes']
|
---|
132 | lim0 = ax.get_xlim()
|
---|
133 | offset = (lim0[1]-lim0[0])*0.05
|
---|
134 | ax.set_xlim(lim0[0]-offset,lim0[1]+offset)
|
---|
135 | del ax, lim0, offset
|
---|
136 | _plot.__doc__ = asapplotter._plot.__doc__
|
---|
137 |
|
---|
138 | def _is_new_scan(self,scan):
|
---|
139 | if isinstance(scan, scantable):
|
---|
140 | if self._data is not None:
|
---|
141 | if scan != self._data:
|
---|
142 | return True
|
---|
143 | else:
|
---|
144 | return True
|
---|
145 | return False
|
---|