1 | // |
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2 | // C++ Interface: MSFiller |
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3 | // |
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4 | // Description: |
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5 | // |
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6 | // This class is specific filler for MS format |
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7 | // New version that is implemented using TableVisitor instead of TableIterator |
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8 | // |
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9 | // Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2011 |
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10 | // |
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11 | // Copyright: See COPYING file that comes with this distribution |
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12 | // |
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13 | // |
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14 | |
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15 | #include <assert.h> |
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16 | #include <iostream> |
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17 | #include <map> |
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18 | #include <set> |
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19 | |
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20 | #include <tables/Tables/ExprNode.h> |
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21 | #include <tables/Tables/TableIter.h> |
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22 | #include <tables/Tables/TableColumn.h> |
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23 | #include <tables/Tables/ScalarColumn.h> |
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24 | #include <tables/Tables/ArrayColumn.h> |
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25 | #include <tables/Tables/TableParse.h> |
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26 | #include <tables/Tables/TableRow.h> |
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27 | |
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28 | #include <casa/Containers/RecordField.h> |
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29 | #include <casa/Logging/LogIO.h> |
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30 | #include <casa/Arrays/Slicer.h> |
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31 | #include <casa/Quanta/MVTime.h> |
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32 | #include <casa/OS/Path.h> |
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33 | |
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34 | #include <measures/Measures/Stokes.h> |
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35 | #include <measures/Measures/MEpoch.h> |
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36 | #include <measures/Measures/MCEpoch.h> |
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37 | #include <measures/Measures/MFrequency.h> |
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38 | #include <measures/Measures/MCFrequency.h> |
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39 | #include <measures/Measures/MPosition.h> |
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40 | #include <measures/Measures/MCPosition.h> |
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41 | #include <measures/Measures/MDirection.h> |
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42 | #include <measures/Measures/MCDirection.h> |
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43 | #include <measures/Measures/MeasConvert.h> |
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44 | #include <measures/TableMeasures/ScalarMeasColumn.h> |
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45 | #include <measures/TableMeasures/ArrayMeasColumn.h> |
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46 | #include <measures/TableMeasures/ScalarQuantColumn.h> |
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47 | #include <measures/TableMeasures/ArrayQuantColumn.h> |
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48 | |
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49 | #include <ms/MeasurementSets/MSAntennaIndex.h> |
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50 | |
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51 | #include <atnf/PKSIO/SrcType.h> |
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52 | |
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53 | #include "MSFiller.h" |
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54 | #include "STHeader.h" |
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55 | |
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56 | #include "MathUtils.h" |
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57 | |
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58 | using namespace casa ; |
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59 | using namespace std ; |
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60 | |
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61 | namespace asap { |
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62 | |
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63 | class BaseMSFillerVisitor: public TableVisitor { |
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64 | uInt lastRecordNo ; |
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65 | Int lastObservationId ; |
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66 | Int lastFeedId ; |
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67 | Int lastFieldId ; |
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68 | Int lastDataDescId ; |
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69 | Int lastScanNo ; |
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70 | Int lastStateId ; |
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71 | Double lastTime ; |
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72 | protected: |
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73 | const Table &table; |
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74 | uInt count; |
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75 | public: |
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76 | BaseMSFillerVisitor(const Table &table) |
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77 | : table(table) |
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78 | { |
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79 | count = 0; |
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80 | } |
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81 | |
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82 | virtual void enterObservationId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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83 | virtual void leaveObservationId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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84 | virtual void enterFeedId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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85 | virtual void leaveFeedId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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86 | virtual void enterFieldId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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87 | virtual void leaveFieldId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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88 | virtual void enterDataDescId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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89 | virtual void leaveDataDescId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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90 | virtual void enterScanNo(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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91 | virtual void leaveScanNo(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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92 | virtual void enterStateId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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93 | virtual void leaveStateId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
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94 | virtual void enterTime(const uInt /*recordNo*/, Double /*columnValue*/) { } |
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95 | virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) { } |
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96 | |
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97 | virtual Bool visitRecord(const uInt /*recordNo*/, |
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98 | const Int /*ObservationId*/, |
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99 | const Int /*feedId*/, |
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100 | const Int /*fieldId*/, |
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101 | const Int /*dataDescId*/, |
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102 | const Int /*scanNo*/, |
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103 | const Int /*stateId*/, |
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104 | const Double /*time*/) { return True ; } |
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105 | |
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106 | virtual Bool visit(Bool isFirst, const uInt recordNo, |
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107 | const uInt nCols, void const *const colValues[]) { |
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108 | Int observationId, feedId, fieldId, dataDescId, scanNo, stateId; |
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109 | Double time; |
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110 | { // prologue |
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111 | uInt i = 0; |
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112 | { |
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113 | const Int *col = (const Int *)colValues[i++]; |
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114 | observationId = col[recordNo]; |
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115 | } |
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116 | { |
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117 | const Int *col = (const Int *)colValues[i++]; |
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118 | feedId = col[recordNo]; |
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119 | } |
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120 | { |
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121 | const Int *col = (const Int *)colValues[i++]; |
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122 | fieldId = col[recordNo]; |
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123 | } |
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124 | { |
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125 | const Int *col = (const Int *)colValues[i++]; |
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126 | dataDescId = col[recordNo]; |
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127 | } |
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128 | { |
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129 | const Int *col = (const Int *)colValues[i++]; |
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130 | scanNo = col[recordNo]; |
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131 | } |
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132 | { |
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133 | const Int *col = (const Int *)colValues[i++]; |
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134 | stateId = col[recordNo]; |
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135 | } |
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136 | { |
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137 | const Double *col = (const Double *)colValues[i++]; |
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138 | time = col[recordNo]; |
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139 | } |
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140 | assert(nCols == i); |
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141 | } |
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142 | |
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143 | if (isFirst) { |
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144 | enterObservationId(recordNo, observationId); |
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145 | enterFeedId(recordNo, feedId); |
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146 | enterFieldId(recordNo, fieldId); |
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147 | enterDataDescId(recordNo, dataDescId); |
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148 | enterScanNo(recordNo, scanNo); |
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149 | enterStateId(recordNo, stateId); |
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150 | enterTime(recordNo, time); |
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151 | } else { |
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152 | if (lastObservationId != observationId) { |
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153 | leaveTime(lastRecordNo, lastTime); |
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154 | leaveStateId(lastRecordNo, lastStateId); |
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155 | leaveScanNo(lastRecordNo, lastScanNo); |
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156 | leaveDataDescId(lastRecordNo, lastDataDescId); |
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157 | leaveFieldId(lastRecordNo, lastFieldId); |
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158 | leaveFeedId(lastRecordNo, lastFeedId); |
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159 | leaveObservationId(lastRecordNo, lastObservationId); |
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160 | |
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161 | enterObservationId(recordNo, observationId); |
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162 | enterFeedId(recordNo, feedId); |
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163 | enterFieldId(recordNo, fieldId); |
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164 | enterDataDescId(recordNo, dataDescId); |
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165 | enterScanNo(recordNo, scanNo); |
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166 | enterStateId(recordNo, stateId); |
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167 | enterTime(recordNo, time); |
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168 | } else if (lastFeedId != feedId) { |
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169 | leaveTime(lastRecordNo, lastTime); |
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170 | leaveStateId(lastRecordNo, lastStateId); |
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171 | leaveScanNo(lastRecordNo, lastScanNo); |
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172 | leaveDataDescId(lastRecordNo, lastDataDescId); |
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173 | leaveFieldId(lastRecordNo, lastFieldId); |
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174 | leaveFeedId(lastRecordNo, lastFeedId); |
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175 | |
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176 | enterFeedId(recordNo, feedId); |
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177 | enterFieldId(recordNo, fieldId); |
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178 | enterDataDescId(recordNo, dataDescId); |
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179 | enterScanNo(recordNo, scanNo); |
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180 | enterStateId(recordNo, stateId); |
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181 | enterTime(recordNo, time); |
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182 | } else if (lastFieldId != fieldId) { |
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183 | leaveTime(lastRecordNo, lastTime); |
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184 | leaveStateId(lastRecordNo, lastStateId); |
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185 | leaveScanNo(lastRecordNo, lastScanNo); |
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186 | leaveDataDescId(lastRecordNo, lastDataDescId); |
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187 | leaveFieldId(lastRecordNo, lastFieldId); |
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188 | |
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189 | enterFieldId(recordNo, fieldId); |
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190 | enterDataDescId(recordNo, dataDescId); |
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191 | enterScanNo(recordNo, scanNo); |
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192 | enterStateId(recordNo, stateId); |
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193 | enterTime(recordNo, time); |
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194 | } else if (lastDataDescId != dataDescId) { |
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195 | leaveTime(lastRecordNo, lastTime); |
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196 | leaveStateId(lastRecordNo, lastStateId); |
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197 | leaveScanNo(lastRecordNo, lastScanNo); |
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198 | leaveDataDescId(lastRecordNo, lastDataDescId); |
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199 | |
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200 | enterDataDescId(recordNo, dataDescId); |
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201 | enterScanNo(recordNo, scanNo); |
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202 | enterStateId(recordNo, stateId); |
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203 | enterTime(recordNo, time); |
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204 | } else if (lastScanNo != scanNo) { |
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205 | leaveTime(lastRecordNo, lastTime); |
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206 | leaveStateId(lastRecordNo, lastStateId); |
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207 | leaveScanNo(lastRecordNo, lastScanNo); |
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208 | |
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209 | enterScanNo(recordNo, scanNo); |
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210 | enterStateId(recordNo, stateId); |
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211 | enterTime(recordNo, time); |
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212 | } else if (lastStateId != stateId) { |
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213 | leaveTime(lastRecordNo, lastTime); |
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214 | leaveStateId(lastRecordNo, lastStateId); |
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215 | |
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216 | enterStateId(recordNo, stateId); |
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217 | enterTime(recordNo, time); |
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218 | } else if (lastTime != time) { |
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219 | leaveTime(lastRecordNo, lastTime); |
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220 | enterTime(recordNo, time); |
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221 | } |
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222 | } |
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223 | count++; |
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224 | Bool result = visitRecord(recordNo, observationId, feedId, fieldId, dataDescId, |
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225 | scanNo, stateId, time); |
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226 | |
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227 | { // epilogue |
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228 | lastRecordNo = recordNo; |
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229 | |
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230 | lastObservationId = observationId; |
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231 | lastFeedId = feedId; |
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232 | lastFieldId = fieldId; |
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233 | lastDataDescId = dataDescId; |
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234 | lastScanNo = scanNo; |
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235 | lastStateId = stateId; |
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236 | lastTime = time; |
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237 | } |
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238 | return result ; |
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239 | } |
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240 | |
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241 | virtual void finish() { |
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242 | if (count > 0) { |
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243 | leaveTime(lastRecordNo, lastTime); |
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244 | leaveStateId(lastRecordNo, lastStateId); |
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245 | leaveScanNo(lastRecordNo, lastScanNo); |
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246 | leaveDataDescId(lastRecordNo, lastDataDescId); |
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247 | leaveFieldId(lastRecordNo, lastFieldId); |
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248 | leaveFeedId(lastRecordNo, lastFeedId); |
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249 | leaveObservationId(lastRecordNo, lastObservationId); |
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250 | } |
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251 | } |
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252 | }; |
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253 | |
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254 | class MSFillerVisitor: public BaseMSFillerVisitor, public MSFillerUtils { |
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255 | public: |
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256 | MSFillerVisitor(const Table &from, Scantable &to) |
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257 | : BaseMSFillerVisitor(from), |
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258 | scantable(to) |
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259 | { |
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260 | antennaId = 0 ; |
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261 | rowidx = 0 ; |
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262 | tablerow = TableRow( scantable.table() ) ; |
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263 | feedEntry = Vector<Int>( 64, -1 ) ; |
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264 | nbeam = 0 ; |
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265 | ifmap.clear() ; |
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266 | const TableDesc &desc = table.tableDesc() ; |
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267 | if ( desc.isColumn( "DATA" ) ) |
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268 | dataColumnName = "DATA" ; |
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269 | else if ( desc.isColumn( "FLOAT_DATA" ) ) |
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270 | dataColumnName = "FLOAT_DATA" ; |
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271 | getpt = False ; |
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272 | isWeather_ = False ; |
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273 | isSysCal = False ; |
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274 | isTcal = False ; |
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275 | cycleNo = 0 ; |
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276 | numSysCalRow = 0 ; |
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277 | header = scantable.getHeader() ; |
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278 | fluxUnit( header.fluxunit ) ; |
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279 | |
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280 | // MS subtables |
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281 | const TableRecord &hdr = table.keywordSet(); |
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282 | obstab = hdr.asTable( "OBSERVATION" ) ; |
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283 | spwtab = hdr.asTable( "SPECTRAL_WINDOW" ) ; |
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284 | statetab = hdr.asTable( "STATE" ) ; |
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285 | ddtab = hdr.asTable( "DATA_DESCRIPTION" ) ; |
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286 | poltab = hdr.asTable( "POLARIZATION" ) ; |
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287 | fieldtab = hdr.asTable( "FIELD" ) ; |
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288 | anttab = hdr.asTable( "ANTENNA" ) ; |
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289 | if ( hdr.isDefined( "SYSCAL" ) ) |
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290 | sctab = hdr.asTable( "SYSCAL" ) ; |
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291 | if ( hdr.isDefined( "SOURCE" ) ) |
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292 | srctab = hdr.asTable( "SOURCE" ) ; |
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293 | |
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294 | // attach to columns |
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295 | // MS MAIN |
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296 | intervalCol.attach( table, "INTERVAL" ) ; |
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297 | flagRowCol.attach( table, "FLAG_ROW" ) ; |
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298 | flagCol.attach( table, "FLAG" ) ; |
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299 | if ( dataColumnName.compare( "DATA" ) == 0 ) |
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300 | dataCol.attach( table, dataColumnName ) ; |
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301 | else |
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302 | floatDataCol.attach( table, dataColumnName ) ; |
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303 | |
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304 | // set dummy epoch |
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305 | mf.set( currentTime ) ; |
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306 | |
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307 | // |
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308 | // add rows to scantable |
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309 | // |
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310 | // number of polarization is up to 4 |
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311 | uInt addrow = table.nrow() * maxNumPol() ; |
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312 | scantable.table().addRow( addrow ) ; |
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313 | |
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314 | // attach to columns |
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315 | // Scantable MAIN |
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316 | TableRecord &r = tablerow.record() ; |
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317 | timeRF.attachToRecord( r, "TIME" ) ; |
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318 | intervalRF.attachToRecord( r, "INTERVAL" ) ; |
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319 | directionRF.attachToRecord( r, "DIRECTION" ) ; |
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320 | azimuthRF.attachToRecord( r, "AZIMUTH" ) ; |
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321 | elevationRF.attachToRecord( r, "ELEVATION" ) ; |
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322 | scanRateRF.attachToRecord( r, "SCANRATE" ) ; |
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323 | weatherIdRF.attachToRecord( r, "WEATHER_ID" ) ; |
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324 | cycleNoRF.attachToRecord( r, "CYCLENO" ) ; |
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325 | flagRowRF.attachToRecord( r, "FLAGROW" ) ; |
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326 | polNoRF.attachToRecord( r, "POLNO" ) ; |
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327 | tcalIdRF.attachToRecord( r, "TCAL_ID" ) ; |
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328 | spectraRF.attachToRecord( r, "SPECTRA" ) ; |
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329 | flagtraRF.attachToRecord( r, "FLAGTRA" ) ; |
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330 | tsysRF.attachToRecord( r, "TSYS" ) ; |
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331 | beamNoRF.attachToRecord( r, "BEAMNO" ) ; |
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332 | ifNoRF.attachToRecord( r, "IFNO" ) ; |
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333 | freqIdRF.attachToRecord( r, "FREQ_ID" ) ; |
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334 | moleculeIdRF.attachToRecord( r, "MOLECULE_ID" ) ; |
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335 | sourceNameRF.attachToRecord( r, "SRCNAME" ) ; |
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336 | sourceProperMotionRF.attachToRecord( r, "SRCPROPERMOTION" ) ; |
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337 | sourceDirectionRF.attachToRecord( r, "SRCDIRECTION" ) ; |
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338 | sourceVelocityRF.attachToRecord( r, "SRCVELOCITY" ) ; |
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339 | focusIdRF.attachToRecord( r, "FOCUS_ID" ) ; |
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340 | fieldNameRF.attachToRecord( r, "FIELDNAME" ) ; |
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341 | sourceTypeRF.attachToRecord( r, "SRCTYPE" ) ; |
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342 | scanNoRF.attachToRecord( r, "SCANNO" ) ; |
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343 | |
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344 | // put values |
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345 | RecordFieldPtr<Int> refBeamNoRF( r, "REFBEAMNO" ) ; |
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346 | *refBeamNoRF = -1 ; |
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347 | RecordFieldPtr<Int> fitIdRF( r, "FIT_ID" ) ; |
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348 | *fitIdRF = -1 ; |
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349 | RecordFieldPtr<Float> opacityRF( r, "OPACITY" ) ; |
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350 | *opacityRF = 0.0 ; |
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351 | } |
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352 | |
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353 | virtual void enterObservationId(const uInt /*recordNo*/, Int columnValue) { |
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354 | //printf("%u: ObservationId: %d\n", recordNo, columnValue); |
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355 | // update header |
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356 | if ( header.observer.empty() ) |
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357 | getScalar( String("OBSERVER"), (uInt)columnValue, obstab, header.observer ) ; |
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358 | if ( header.project.empty() ) |
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359 | getScalar( "PROJECT", (uInt)columnValue, obstab, header.project ) ; |
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360 | if ( header.utc == 0.0 ) { |
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361 | Vector<MEpoch> amp ; |
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362 | getArrayMeas( "TIME_RANGE", (uInt)columnValue, obstab, amp ) ; |
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363 | obsEpoch = amp[0]; |
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364 | header.utc = obsEpoch.get( "d" ).getValue() ; |
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365 | } |
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366 | if ( header.antennaname.empty() ) |
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367 | getScalar( "TELESCOPE_NAME", (uInt)columnValue, obstab, header.antennaname ) ; |
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368 | } |
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369 | virtual void leaveObservationId(const uInt /*recordNo*/, Int /*columnValue*/) { |
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370 | // update header |
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371 | header.nbeam = max( header.nbeam, (Int)nbeam ) ; |
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372 | |
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373 | nbeam = 0 ; |
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374 | feedEntry = -1 ; |
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375 | } |
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376 | virtual void enterFeedId(const uInt /*recordNo*/, Int columnValue) { |
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377 | //printf("%u: FeedId: %d\n", recordNo, columnValue); |
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378 | |
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379 | // update feed entry |
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380 | if ( allNE( feedEntry, columnValue ) ) { |
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381 | feedEntry[nbeam] = columnValue ; |
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382 | nbeam++ ; |
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383 | } |
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384 | |
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385 | // put values |
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386 | *beamNoRF = (uInt)columnValue ; |
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387 | *focusIdRF = (uInt)0 ; |
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388 | } |
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389 | virtual void leaveFeedId(const uInt /*recordNo*/, Int /*columnValue*/) { |
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390 | uInt nelem = feedEntry.nelements() ; |
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391 | if ( nbeam > nelem ) { |
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392 | feedEntry.resize( nelem+64, True ) ; |
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393 | Slicer slice( IPosition( 1, nelem ), IPosition( 1, feedEntry.nelements()-1 ) ) ; |
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394 | feedEntry( slice ) = -1 ; |
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395 | } |
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396 | } |
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397 | virtual void enterFieldId(const uInt /*recordNo*/, Int columnValue) { |
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398 | //printf("%u: FieldId: %d\n", recordNo, columnValue); |
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399 | // update sourceId and fieldName |
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400 | getScalar( "SOURCE_ID", (uInt)columnValue, fieldtab, sourceId ) ; |
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401 | String fieldName ; |
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402 | getScalar( "NAME", (uInt)columnValue, fieldtab, fieldName ) ; |
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403 | fieldName += "__" + String::toString( columnValue ) ; |
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404 | |
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405 | // put values |
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406 | *fieldNameRF = fieldName ; |
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407 | } |
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408 | virtual void leaveFieldId(const uInt /*recordNo*/, Int /*columnValue*/) { |
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409 | sourceId = -1 ; |
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410 | } |
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411 | virtual void enterDataDescId(const uInt /*recordNo*/, Int columnValue) { |
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412 | //printf("%u: DataDescId: %d\n", recordNo, columnValue); |
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413 | // update polarization and spectral window ids |
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414 | getScalar( "POLARIZATION_ID", (uInt)columnValue, ddtab, polId ) ; |
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415 | getScalar( "SPECTRAL_WINDOW_ID", (uInt)columnValue, ddtab, spwId ) ; |
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416 | |
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417 | // polarization setup |
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418 | getScalar( "NUM_CORR", (uInt)polId, poltab, npol ) ; |
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419 | Vector<Int> corrtype ; |
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420 | getArray( "CORR_TYPE", (uInt)polId, poltab, corrtype ) ; |
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421 | polnos = getPolNos( corrtype ) ; |
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422 | |
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423 | // process SOURCE table |
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424 | String sourceName ; |
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425 | Vector<Double> sourcePM, restFreqs, sysVels ; |
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426 | Vector<String> transition ; |
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427 | processSource( sourceId, spwId, sourceName, sourceDir, sourcePM, |
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428 | restFreqs, transition, sysVels ) ; |
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429 | |
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430 | // spectral setup |
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431 | uInt freqId ; |
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432 | Double reffreq, bandwidth ; |
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433 | String freqref ; |
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434 | getScalar( "NUM_CHAN", (uInt)spwId, spwtab, nchan ) ; |
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435 | Bool iswvr = (Bool)(nchan == 4) ; |
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436 | map<Int,uInt>::iterator iter = ifmap.find( spwId ) ; |
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437 | if ( iter == ifmap.end() ) { |
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438 | //MEpoch me ; |
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439 | //getScalarMeas( "TIME", recordNo, table, me ) ; |
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440 | //spectralSetup( spwId, me, antpos, sourceDir, |
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441 | spectralSetup(spwId, obsEpoch, antpos, sourceDir, |
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442 | freqId, nchan, |
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443 | freqref, reffreq, bandwidth); |
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444 | ifmap.insert( pair<Int,uInt>(spwId,freqId) ) ; |
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445 | } |
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446 | else { |
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447 | freqId = iter->second ; |
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448 | } |
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449 | sp.resize( npol, nchan ) ; |
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450 | fl.resize( npol, nchan ) ; |
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451 | |
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452 | |
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453 | // molecular setup |
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454 | STMolecules mtab = scantable.molecules() ; |
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455 | uInt molId = mtab.addEntry( restFreqs, transition, transition ) ; |
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456 | |
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457 | // process SYSCAL table |
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458 | if ( isSysCal ) |
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459 | processSysCal( spwId ) ; |
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460 | |
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461 | // update header |
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462 | if ( !iswvr ) { |
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463 | header.nchan = max( header.nchan, nchan ) ; |
---|
464 | header.bandwidth = max( header.bandwidth, bandwidth ) ; |
---|
465 | if ( header.reffreq == -1.0 ) |
---|
466 | header.reffreq = reffreq ; |
---|
467 | header.npol = max( header.npol, npol ) ; |
---|
468 | if ( header.poltype.empty() ) |
---|
469 | header.poltype = getPolType( corrtype[0] ) ; |
---|
470 | if ( header.freqref.empty() ) |
---|
471 | header.freqref = freqref ; |
---|
472 | } |
---|
473 | |
---|
474 | // put values |
---|
475 | *ifNoRF = (uInt)spwId ; |
---|
476 | *freqIdRF = freqId ; |
---|
477 | *moleculeIdRF = molId ; |
---|
478 | *sourceNameRF = sourceName ; |
---|
479 | sourceProperMotionRF.define( sourcePM ) ; |
---|
480 | Vector<Double> srcD = sourceDir.getAngle().getValue( "rad" ) ; |
---|
481 | sourceDirectionRF.define( srcD ) ; |
---|
482 | if ( !sysVels.empty() ) |
---|
483 | *sourceVelocityRF = sysVels[0] ; |
---|
484 | else { |
---|
485 | *sourceVelocityRF = (Double)0.0 ; |
---|
486 | } |
---|
487 | } |
---|
488 | virtual void leaveDataDescId(const uInt /*recordNo*/, Int /*columnValue*/) { |
---|
489 | npol = 0 ; |
---|
490 | nchan = 0 ; |
---|
491 | numSysCalRow = 0 ; |
---|
492 | } |
---|
493 | virtual void enterScanNo(const uInt /*recordNo*/, Int columnValue) { |
---|
494 | //printf("%u: ScanNo: %d\n", recordNo, columnValue); |
---|
495 | // put value |
---|
496 | // CAS-5841: SCANNO should be consistent with MS SCAN_NUMBER |
---|
497 | *scanNoRF = (uInt)columnValue ; |
---|
498 | } |
---|
499 | virtual void leaveScanNo(const uInt /*recordNo*/, Int /*columnValue*/) { |
---|
500 | cycleNo = 0 ; |
---|
501 | } |
---|
502 | virtual void enterStateId(const uInt /*recordNo*/, Int columnValue) { |
---|
503 | //printf("%u: StateId: %d\n", recordNo, columnValue); |
---|
504 | // SRCTYPE |
---|
505 | Int srcType = getSrcType( columnValue ) ; |
---|
506 | |
---|
507 | // update header |
---|
508 | if ( header.obstype.empty() ) |
---|
509 | getScalar( "OBS_MODE", (uInt)columnValue, statetab, header.obstype ) ; |
---|
510 | |
---|
511 | // put value |
---|
512 | *sourceTypeRF = srcType ; |
---|
513 | } |
---|
514 | virtual void leaveStateId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
515 | virtual void enterTime(const uInt recordNo, Double columnValue) { |
---|
516 | //printf("%u: Time: %f\n", recordNo, columnValue); |
---|
517 | currentTime = MEpoch( Quantity( columnValue, "s" ), MEpoch::UTC ) ; |
---|
518 | |
---|
519 | // DIRECTION, AZEL, and SCANRATE |
---|
520 | Vector<Double> direction, azel ; |
---|
521 | Vector<Double> scanrate( 2, 0.0 ) ; |
---|
522 | if ( getpt ) |
---|
523 | getDirection( direction, azel, scanrate ) ; |
---|
524 | else |
---|
525 | getSourceDirection( direction, azel, scanrate ) ; |
---|
526 | |
---|
527 | // INTERVAL |
---|
528 | Double interval = intervalCol.asdouble( recordNo ) ; |
---|
529 | |
---|
530 | // WEATHER_ID |
---|
531 | uInt wid = 0 ; |
---|
532 | if ( isWeather_ ) |
---|
533 | wid = getWeatherId() ; |
---|
534 | |
---|
535 | // put value |
---|
536 | Double t = currentTime.get( "d" ).getValue() ; |
---|
537 | *timeRF = t ; |
---|
538 | *intervalRF = interval ; |
---|
539 | directionRF.define( direction ) ; |
---|
540 | *azimuthRF = (Float)azel[0] ; |
---|
541 | *elevationRF = (Float)azel[1] ; |
---|
542 | scanRateRF.define( scanrate ) ; |
---|
543 | *weatherIdRF = wid ; |
---|
544 | } |
---|
545 | virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) { } |
---|
546 | virtual Bool visitRecord(const uInt recordNo, |
---|
547 | const Int /*observationId*/, |
---|
548 | const Int /*feedId*/, |
---|
549 | const Int /*fieldId*/, |
---|
550 | const Int /*dataDescId*/, |
---|
551 | const Int /*scanNo*/, |
---|
552 | const Int /*stateId*/, |
---|
553 | const Double /*time*/) |
---|
554 | { |
---|
555 | //printf("%u: %d, %d, %d, %d, %d, %d, %f\n", recordNo, |
---|
556 | //observationId, feedId, fieldId, dataDescId, scanNo, stateId, time); |
---|
557 | |
---|
558 | // SPECTRA and FLAGTRA |
---|
559 | //Matrix<Float> sp; |
---|
560 | //Matrix<uChar> fl; |
---|
561 | spectraAndFlagtra( recordNo, sp, fl ) ; |
---|
562 | |
---|
563 | // FLAGROW |
---|
564 | Bool flr = flagRowCol.asBool( recordNo ) ; |
---|
565 | |
---|
566 | // TSYS |
---|
567 | Matrix<Float> tsys ; |
---|
568 | uInt scIdx = getSysCalIndex() ; |
---|
569 | if ( numSysCalRow > 0 ) { |
---|
570 | tsys = sysCalTsysCol( syscalRow[scIdx] ) ; |
---|
571 | } |
---|
572 | else { |
---|
573 | tsys.resize( npol, 1 ) ; |
---|
574 | tsys = 1.0 ; |
---|
575 | } |
---|
576 | |
---|
577 | // TCAL_ID |
---|
578 | Block<uInt> tcalids( npol, 0 ) ; |
---|
579 | if ( numSysCalRow > 0 ) { |
---|
580 | tcalids = getTcalId( syscalTime[scIdx] ) ; |
---|
581 | } |
---|
582 | else { |
---|
583 | tcalids = getDummyTcalId( spwId ) ; |
---|
584 | } |
---|
585 | |
---|
586 | // put value |
---|
587 | *cycleNoRF = cycleNo ; |
---|
588 | *flagRowRF = (uInt)flr ; |
---|
589 | |
---|
590 | // for each polarization component |
---|
591 | for ( Int ipol = 0 ; ipol < npol ; ipol++ ) { |
---|
592 | // put value depending on polarization component |
---|
593 | *polNoRF = polnos[ipol] ; |
---|
594 | *tcalIdRF = tcalids[ipol] ; |
---|
595 | spectraRF.define( sp.row( ipol ) ) ; |
---|
596 | flagtraRF.define( fl.row( ipol ) ) ; |
---|
597 | tsysRF.define( tsys.row( ipol ) ) ; |
---|
598 | |
---|
599 | // commit row |
---|
600 | tablerow.put( rowidx ) ; |
---|
601 | rowidx++ ; |
---|
602 | } |
---|
603 | |
---|
604 | // increment CYCLENO |
---|
605 | cycleNo++ ; |
---|
606 | |
---|
607 | return True ; |
---|
608 | } |
---|
609 | virtual void finish() |
---|
610 | { |
---|
611 | BaseMSFillerVisitor::finish(); |
---|
612 | //printf("Total: %u\n", count); |
---|
613 | // remove redundant rows |
---|
614 | //cout << "filled " << rowidx << " rows out of " << scantable.nrow() << " rows" << endl ; |
---|
615 | if ( scantable.nrow() > (Int)rowidx ) { |
---|
616 | uInt numRemove = scantable.nrow() - rowidx ; |
---|
617 | //cout << "numRemove = " << numRemove << endl ; |
---|
618 | Vector<uInt> rows( numRemove ) ; |
---|
619 | indgen( rows, rowidx ) ; |
---|
620 | scantable.table().removeRow( rows ) ; |
---|
621 | } |
---|
622 | |
---|
623 | // antenna name and station name |
---|
624 | String antennaName ; |
---|
625 | getScalar( "NAME", (uInt)antennaId, anttab, antennaName ) ; |
---|
626 | String stationName ; |
---|
627 | getScalar( "STATION", (uInt)antennaId, anttab, stationName ) ; |
---|
628 | |
---|
629 | // update header |
---|
630 | header.nif = ifmap.size() ; |
---|
631 | header.antennaposition = antpos.get( "m" ).getValue() ; |
---|
632 | if ( header.antennaname.empty() || header.antennaname == antennaName ) |
---|
633 | header.antennaname = antennaName ; |
---|
634 | else |
---|
635 | header.antennaname += "//" + antennaName ; |
---|
636 | if ( !stationName.empty() && stationName != antennaName ) |
---|
637 | header.antennaname += "@" + stationName ; |
---|
638 | if ( header.fluxunit.empty() || header.fluxunit == "CNTS" ) |
---|
639 | header.fluxunit = "K" ; |
---|
640 | header.epoch = "UTC" ; |
---|
641 | header.equinox = 2000.0 ; |
---|
642 | if (header.freqref == "TOPO") { |
---|
643 | header.freqref = "TOPOCENT"; |
---|
644 | } else if (header.freqref == "GEO") { |
---|
645 | header.freqref = "GEOCENTR"; |
---|
646 | } else if (header.freqref == "BARY") { |
---|
647 | header.freqref = "BARYCENT"; |
---|
648 | } else if (header.freqref == "GALACTO") { |
---|
649 | header.freqref = "GALACTOC"; |
---|
650 | } else if (header.freqref == "LGROUP") { |
---|
651 | header.freqref = "LOCALGRP"; |
---|
652 | } else if (header.freqref == "CMB") { |
---|
653 | header.freqref = "CMBDIPOL"; |
---|
654 | } else if (header.freqref == "REST") { |
---|
655 | header.freqref = "SOURCE"; |
---|
656 | } |
---|
657 | scantable.setHeader( header ) ; |
---|
658 | } |
---|
659 | void setAntenna( Int id ) |
---|
660 | { |
---|
661 | antennaId = id ; |
---|
662 | |
---|
663 | Vector< Quantum<Double> > pos ; |
---|
664 | getArrayQuant( "POSITION", (uInt)antennaId, anttab, pos ) ; |
---|
665 | antpos = MPosition( MVPosition( pos ), MPosition::ITRF ) ; |
---|
666 | mf.set( antpos ) ; |
---|
667 | } |
---|
668 | void setPointingTable( const Table &tab, String columnToUse="DIRECTION" ) |
---|
669 | { |
---|
670 | // input POINTING table must be |
---|
671 | // 1) selected by antenna |
---|
672 | // 2) sorted by TIME |
---|
673 | ROScalarColumn<Double> tcol( tab, "TIME" ) ; |
---|
674 | ROArrayColumn<Double> dcol( tab, columnToUse ) ; |
---|
675 | tcol.getColumn( pointingTime ) ; |
---|
676 | dcol.getColumn( pointingDirection ) ; |
---|
677 | const TableRecord &rec = dcol.keywordSet() ; |
---|
678 | String pointingRef = rec.asRecord( "MEASINFO" ).asString( "Ref" ) ; |
---|
679 | MDirection::getType( dirType, pointingRef ) ; |
---|
680 | getpt = True ; |
---|
681 | |
---|
682 | // initialize toj2000 and toazel |
---|
683 | initConvert() ; |
---|
684 | } |
---|
685 | void setWeatherTime( const Vector<Double> &t, const Vector<Double> &it, |
---|
686 | const Vector<uInt> &idx ) |
---|
687 | { |
---|
688 | isWeather_ = True ; |
---|
689 | weatherTime_ = t ; |
---|
690 | weatherInterval_ = it ; |
---|
691 | weatherIndex_ = idx; |
---|
692 | } |
---|
693 | void setSysCalRecord( const Record &r ) |
---|
694 | //void setSysCalRecord( const map< String,Vector<uInt> > &r ) |
---|
695 | { |
---|
696 | isSysCal = True ; |
---|
697 | isTcal = True ; |
---|
698 | syscalRecord = r ; |
---|
699 | if ( syscalRecord.nfields() == 0 ) |
---|
700 | isTcal = False ; |
---|
701 | |
---|
702 | const TableDesc &desc = sctab.tableDesc() ; |
---|
703 | uInt nrow = sctab.nrow() ; |
---|
704 | syscalRow.resize( nrow ) ; |
---|
705 | syscalTime.resize( nrow ) ; |
---|
706 | syscalInterval.resize( nrow ) ; |
---|
707 | String tsysCol = "NONE" ; |
---|
708 | Vector<String> tsysCols = stringToVector( "TSYS_SPECTRUM,TSYS" ) ; |
---|
709 | for ( uInt i = 0 ; i < tsysCols.nelements() ; i++ ) { |
---|
710 | if ( tsysCol == "NONE" && desc.isColumn( tsysCols[i] ) ) |
---|
711 | tsysCol = tsysCols[i] ; |
---|
712 | } |
---|
713 | sysCalTsysCol.attach( sctab, tsysCol ) ; |
---|
714 | } |
---|
715 | STHeader getHeader() { return header ; } |
---|
716 | uInt getNumBeam() { return nbeam ; } |
---|
717 | uInt getFilledRowNum() { return rowidx ; } |
---|
718 | private: |
---|
719 | void initConvert() |
---|
720 | { |
---|
721 | toj2000 = MDirection::Convert( dirType, MDirection::Ref( MDirection::J2000, mf ) ) ; |
---|
722 | toazel = MDirection::Convert( dirType, MDirection::Ref( MDirection::AZELGEO, mf ) ) ; |
---|
723 | } |
---|
724 | |
---|
725 | void fluxUnit( String &u ) |
---|
726 | { |
---|
727 | ROTableColumn col( table, dataColumnName ) ; |
---|
728 | const TableRecord &rec = col.keywordSet() ; |
---|
729 | if ( rec.isDefined( "UNIT" ) ) |
---|
730 | u = rec.asString( "UNIT" ) ; |
---|
731 | else if ( rec.isDefined( "QuantumUnits" ) ) |
---|
732 | u = rec.asString( "QuantumUnits" ) ; |
---|
733 | if ( u.empty() ) |
---|
734 | u = "K" ; |
---|
735 | } |
---|
736 | void processSource( Int sourceId, Int spwId, |
---|
737 | String &name, MDirection &dir, Vector<Double> &pm, |
---|
738 | Vector<Double> &rf, Vector<String> &trans, Vector<Double> &vel ) |
---|
739 | { |
---|
740 | // find row |
---|
741 | uInt nrow = srctab.nrow() ; |
---|
742 | Int idx = -1 ; |
---|
743 | ROTableRow row( srctab ) ; |
---|
744 | for ( uInt irow = 0 ; irow < nrow ; irow++ ) { |
---|
745 | const TableRecord &r = row.get( irow ) ; |
---|
746 | if ( r.asInt( "SOURCE_ID" ) == sourceId ) { |
---|
747 | Int tmpSpwId = r.asInt( "SPECTRAL_WINDOW_ID" ) ; |
---|
748 | if ( tmpSpwId == spwId || tmpSpwId == -1 ) { |
---|
749 | idx = (Int)irow ; |
---|
750 | break ; |
---|
751 | } |
---|
752 | } |
---|
753 | } |
---|
754 | |
---|
755 | // fill |
---|
756 | Int numLines = 0 ; |
---|
757 | if ( idx != -1 ) { |
---|
758 | const TableRecord &r = row.get( idx ) ; |
---|
759 | name = r.asString( "NAME" ) ; |
---|
760 | getScalarMeas( "DIRECTION", idx, srctab, dir ) ; |
---|
761 | pm = r.toArrayDouble( "PROPER_MOTION" ) ; |
---|
762 | numLines = r.asInt( "NUM_LINES" ) ; |
---|
763 | } |
---|
764 | else { |
---|
765 | name = "" ; |
---|
766 | pm = Vector<Double>( 2, 0.0 ) ; |
---|
767 | dir = MDirection( Quantum<Double>(0.0,Unit("rad")), Quantum<Double>(0.0,Unit("rad")) ) ; |
---|
768 | } |
---|
769 | if ( !getpt ) { |
---|
770 | String ref = dir.getRefString() ; |
---|
771 | MDirection::getType( dirType, ref ) ; |
---|
772 | |
---|
773 | // initialize toj2000 and toazel |
---|
774 | initConvert() ; |
---|
775 | } |
---|
776 | |
---|
777 | rf.resize( numLines ) ; |
---|
778 | trans.resize( numLines ) ; |
---|
779 | vel.resize( numLines ) ; |
---|
780 | if ( numLines > 0 ) { |
---|
781 | Block<Bool> isDefined = row.getDefined() ; |
---|
782 | Vector<String> colNames = row.columnNames() ; |
---|
783 | Vector<Int> indexes( 3, -1 ) ; |
---|
784 | Vector<String> cols = stringToVector( "REST_FREQUENCY,TRANSITION,SYSVEL" ) ; |
---|
785 | for ( uInt icol = 0 ; icol < colNames.nelements() ; icol++ ) { |
---|
786 | if ( anyEQ( indexes, -1 ) ) { |
---|
787 | for ( uInt jcol = 0 ; jcol < cols.nelements() ; jcol++ ) { |
---|
788 | if ( colNames[icol] == cols[jcol] ) |
---|
789 | indexes[jcol] = icol ; |
---|
790 | } |
---|
791 | } |
---|
792 | } |
---|
793 | if ( indexes[0] != -1 && isDefined[indexes[0]] == True ) { |
---|
794 | Vector< Quantum<Double> > qrf ; |
---|
795 | getArrayQuant( "REST_FREQUENCY", idx, srctab, qrf ) ; |
---|
796 | for ( int i = 0 ; i < numLines ; i++ ) |
---|
797 | rf[i] = qrf[i].getValue( "Hz" ) ; |
---|
798 | } |
---|
799 | if ( indexes[1] != -1 && isDefined[indexes[1]] == True ) { |
---|
800 | getArray( "TRANSITION", idx, srctab, trans ) ; |
---|
801 | } |
---|
802 | if ( indexes[2] != -1 && isDefined[indexes[2]] == True ) { |
---|
803 | Vector< Quantum<Double> > qsv ; |
---|
804 | getArrayQuant( "SYSVEL", idx, srctab, qsv ) ; |
---|
805 | for ( int i = 0 ; i < numLines ; i++ ) |
---|
806 | vel[i] = qsv[i].getValue( "m/s" ) ; |
---|
807 | } |
---|
808 | } |
---|
809 | } |
---|
810 | void spectralSetup( Int &spwId, MEpoch &me, MPosition &mp, MDirection &md, |
---|
811 | uInt &freqId, Int &nchan, |
---|
812 | String &freqref, Double &reffreq, Double &bandwidth ) |
---|
813 | { |
---|
814 | // fill |
---|
815 | Int measFreqRef ; |
---|
816 | getScalar( "MEAS_FREQ_REF", spwId, spwtab, measFreqRef ) ; |
---|
817 | MFrequency::Types freqRef = MFrequency::castType( measFreqRef ) ; |
---|
818 | //freqref = MFrequency::showType( freqRef ) ; |
---|
819 | //freqref = "LSRK" ; |
---|
820 | freqref = "TOPO"; |
---|
821 | Quantum<Double> q ; |
---|
822 | getScalarQuant( "TOTAL_BANDWIDTH", spwId, spwtab, q ) ; |
---|
823 | bandwidth = q.getValue( "Hz" ) ; |
---|
824 | getScalarQuant( "REF_FREQUENCY", spwId, spwtab, q ) ; |
---|
825 | reffreq = q.getValue( "Hz" ) ; |
---|
826 | Double refpix = 0.5 * ( (Double)nchan-1.0 ) ; |
---|
827 | Int refchan = ( nchan - 1 ) / 2 ; |
---|
828 | Bool even = (Bool)( nchan % 2 == 0 ) ; |
---|
829 | Vector< Quantum<Double> > qa ; |
---|
830 | getArrayQuant( "CHAN_WIDTH", spwId, spwtab, qa ) ; |
---|
831 | // Double increment = qa[refchan].getValue( "Hz" ) ; |
---|
832 | Double increment = abs(qa[refchan].getValue( "Hz" )) ; |
---|
833 | getArrayQuant( "CHAN_FREQ", spwId, spwtab, qa ) ; |
---|
834 | if ( nchan == 1 ) { |
---|
835 | Int netSideband ; |
---|
836 | getScalar( "NET_SIDEBAND", spwId, spwtab, netSideband ) ; |
---|
837 | if ( netSideband == 1 ) increment *= -1.0 ; |
---|
838 | } |
---|
839 | else { |
---|
840 | if ( qa[0].getValue( "Hz" ) > qa[1].getValue( "Hz" ) ) |
---|
841 | increment *= -1.0 ; |
---|
842 | } |
---|
843 | Double refval = qa[refchan].getValue( "Hz" ) ; |
---|
844 | if ( even ) |
---|
845 | refval = 0.5 * ( refval + qa[refchan+1].getValue( "Hz" ) ) ; |
---|
846 | |
---|
847 | // add new row to FREQUENCIES |
---|
848 | Table ftab = scantable.frequencies().table() ; |
---|
849 | freqId = ftab.nrow() ; |
---|
850 | ftab.addRow() ; |
---|
851 | TableRow row( ftab ) ; |
---|
852 | TableRecord &r = row.record() ; |
---|
853 | RecordFieldPtr<uInt> idRF( r, "ID" ) ; |
---|
854 | *idRF = freqId ; |
---|
855 | RecordFieldPtr<Double> refpixRF( r, "REFPIX" ) ; |
---|
856 | RecordFieldPtr<Double> refvalRF( r, "REFVAL" ) ; |
---|
857 | RecordFieldPtr<Double> incrRF( r, "INCREMENT" ) ; |
---|
858 | *refpixRF = refpix ; |
---|
859 | *refvalRF = refval ; |
---|
860 | *incrRF = increment ; |
---|
861 | row.put( freqId ) ; |
---|
862 | } |
---|
863 | void spectraAndFlagtra( uInt recordNo, Matrix<Float> &sp, Matrix<uChar> &fl ) |
---|
864 | { |
---|
865 | Matrix<Bool> b = flagCol( recordNo ) ; |
---|
866 | if ( dataColumnName.compare( "FLOAT_DATA" ) == 0 ) { |
---|
867 | sp = floatDataCol( recordNo ) ; |
---|
868 | convertArray( fl, b ) ; |
---|
869 | } |
---|
870 | else { |
---|
871 | Bool notyet = True ; |
---|
872 | Matrix<Complex> c = dataCol( recordNo ) ; |
---|
873 | for ( Int ipol = 0 ; ipol < npol ; ipol++ ) { |
---|
874 | if ( ( header.poltype == "linear" || header.poltype == "circular" ) |
---|
875 | && ( polnos[ipol] == 2 || polnos[ipol] == 3 ) ) { |
---|
876 | if ( notyet ) { |
---|
877 | Vector<Float> tmp = ComplexToReal( c.row( ipol ) ) ; |
---|
878 | IPosition start( 1, 0 ) ; |
---|
879 | IPosition end( 1, 2*nchan-1 ) ; |
---|
880 | IPosition inc( 1, 2 ) ; |
---|
881 | if ( polnos[ipol] == 2 ) { |
---|
882 | sp.row( ipol ) = tmp( start, end, inc ) ; |
---|
883 | Vector<Bool> br = b.row( ipol ) ; |
---|
884 | Vector<uChar> flr = fl.row( ipol ) ; |
---|
885 | convertArray( flr, br ) ; |
---|
886 | start = IPosition( 1, 1 ) ; |
---|
887 | Int jpol = ipol+1 ; |
---|
888 | while( polnos[jpol] != 3 && jpol < npol ) |
---|
889 | jpol++ ; |
---|
890 | sp.row( jpol ) = tmp( start, end, inc ) ; |
---|
891 | flr.reference( fl.row( jpol ) ) ; |
---|
892 | convertArray( flr, br ) ; |
---|
893 | } |
---|
894 | else if ( polnos[ipol] == 3 ) { |
---|
895 | sp.row( ipol ) = sp.row( ipol ) * (Float)(-1.0) ; |
---|
896 | Int jpol = ipol+1 ; |
---|
897 | while( polnos[jpol] != 2 && jpol < npol ) |
---|
898 | jpol++ ; |
---|
899 | Vector<Bool> br = b.row( ipol ) ; |
---|
900 | Vector<uChar> flr = fl.row( jpol ) ; |
---|
901 | sp.row( jpol ) = tmp( start, end, inc ) ; |
---|
902 | convertArray( flr, br ) ; |
---|
903 | start = IPosition( 1, 1 ) ; |
---|
904 | sp.row( ipol ) = tmp( start, end, inc ) * (Float)(-1.0) ; |
---|
905 | flr.reference( fl.row( ipol ) ) ; |
---|
906 | convertArray( flr, br ) ; |
---|
907 | } |
---|
908 | notyet = False ; |
---|
909 | } |
---|
910 | } |
---|
911 | else { |
---|
912 | Vector<Float> tmp = ComplexToReal( c.row( ipol ) ) ; |
---|
913 | IPosition start( 1, 0 ) ; |
---|
914 | IPosition end( 1, 2*nchan-1 ) ; |
---|
915 | IPosition inc( 1, 2 ) ; |
---|
916 | sp.row( ipol ) = tmp( start, end, inc ) ; |
---|
917 | Vector<Bool> br = b.row( ipol ) ; |
---|
918 | Vector<uChar> flr = fl.row( ipol ) ; |
---|
919 | convertArray( flr, br ) ; |
---|
920 | } |
---|
921 | } |
---|
922 | } |
---|
923 | } |
---|
924 | uInt binarySearch( Vector<Double> &timeList, Double target ) |
---|
925 | { |
---|
926 | Int low = 0 ; |
---|
927 | Int high = timeList.nelements() ; |
---|
928 | uInt idx = 0 ; |
---|
929 | |
---|
930 | while ( low <= high ) { |
---|
931 | idx = (Int)( 0.5 * ( low + high ) ) ; |
---|
932 | Double t = timeList[idx] ; |
---|
933 | if ( t < target ) |
---|
934 | low = idx + 1 ; |
---|
935 | else if ( t > target ) |
---|
936 | high = idx - 1 ; |
---|
937 | else { |
---|
938 | return idx ; |
---|
939 | } |
---|
940 | } |
---|
941 | |
---|
942 | idx = max( 0, min( low, high ) ) ; |
---|
943 | return idx ; |
---|
944 | } |
---|
945 | void getDirection( Vector<Double> &dir, Vector<Double> &azel, Vector<Double> &srate ) |
---|
946 | { |
---|
947 | // @todo At the moment, do binary search every time |
---|
948 | // if this is bottleneck, frequency of binary search must be reduced |
---|
949 | Double t = currentTime.get( "s" ).getValue() ; |
---|
950 | uInt idx = min( binarySearch( pointingTime, t ), pointingTime.nelements()-1 ) ; |
---|
951 | Matrix<Double> d ; |
---|
952 | if ( pointingTime[idx] == t ) |
---|
953 | d = pointingDirection.xyPlane( idx ) ; |
---|
954 | else if ( pointingTime[idx] < t ) { |
---|
955 | if ( idx == pointingTime.nelements()-1 ) |
---|
956 | d = pointingDirection.xyPlane( idx ) ; |
---|
957 | else |
---|
958 | d = interp( pointingTime[idx], pointingTime[idx+1], t, |
---|
959 | pointingDirection.xyPlane( idx ), pointingDirection.xyPlane( idx+1 ) ) ; |
---|
960 | } |
---|
961 | else { |
---|
962 | if ( idx == 0 ) |
---|
963 | d = pointingDirection.xyPlane( idx ) ; |
---|
964 | else |
---|
965 | d = interp( pointingTime[idx-1], pointingTime[idx], t, |
---|
966 | pointingDirection.xyPlane( idx-1 ), pointingDirection.xyPlane( idx ) ) ; |
---|
967 | } |
---|
968 | mf.set( currentTime ) ; |
---|
969 | Quantum< Vector<Double> > tmp( d.column( 0 ), Unit( "rad" ) ) ; |
---|
970 | if ( dirType != MDirection::J2000 ) { |
---|
971 | dir = toj2000( tmp ).getAngle( "rad" ).getValue() ; |
---|
972 | } |
---|
973 | else { |
---|
974 | dir = d.column( 0 ) ; |
---|
975 | } |
---|
976 | if ( dirType != MDirection::AZELGEO ) { |
---|
977 | azel = toazel( tmp ).getAngle( "rad" ).getValue() ; |
---|
978 | } |
---|
979 | else { |
---|
980 | azel = d.column( 0 ) ; |
---|
981 | } |
---|
982 | if ( d.ncolumn() > 1 ) |
---|
983 | srate = d.column( 1 ) ; |
---|
984 | } |
---|
985 | void getSourceDirection( Vector<Double> &dir, Vector<Double> &azel, Vector<Double> &/*srate*/ ) |
---|
986 | { |
---|
987 | dir = sourceDir.getAngle( "rad" ).getValue() ; |
---|
988 | mf.set( currentTime ) ; |
---|
989 | azel = toazel( Quantum< Vector<Double> >( dir, Unit("rad") ) ).getAngle( "rad" ).getValue() ; |
---|
990 | if ( dirType != MDirection::J2000 ) { |
---|
991 | dir = toj2000( Quantum< Vector<Double> >( dir, Unit("rad") ) ).getAngle( "rad" ).getValue() ; |
---|
992 | } |
---|
993 | } |
---|
994 | String detectSeparator( String &s ) |
---|
995 | { |
---|
996 | String tmp = s.substr( 0, s.find_first_of( "," ) ) ; |
---|
997 | const Char *separators[] = { ":", "#", ".", "_" } ; |
---|
998 | uInt nsep = 4 ; |
---|
999 | for ( uInt i = 0 ; i < nsep ; i++ ) { |
---|
1000 | if ( tmp.find( separators[i] ) != String::npos ) |
---|
1001 | return separators[i] ; |
---|
1002 | } |
---|
1003 | return "" ; |
---|
1004 | } |
---|
1005 | Int getSrcType( Int stateId ) |
---|
1006 | { |
---|
1007 | // get values |
---|
1008 | Bool sig ; |
---|
1009 | getScalar( "SIG", stateId, statetab, sig ) ; |
---|
1010 | Bool ref ; |
---|
1011 | getScalar( "REF", stateId, statetab, ref ) ; |
---|
1012 | Double cal ; |
---|
1013 | getScalar( "CAL", stateId, statetab, cal ) ; |
---|
1014 | String obsmode ; |
---|
1015 | getScalar( "OBS_MODE", stateId, statetab, obsmode ) ; |
---|
1016 | String sep = detectSeparator( obsmode ) ; |
---|
1017 | |
---|
1018 | Int srcType = SrcType::NOTYPE ; |
---|
1019 | if ( sep == ":" ) |
---|
1020 | srcTypeGBT( srcType, sep, obsmode, sig, ref, cal ) ; |
---|
1021 | else if ( sep == "." || sep == "#" ) |
---|
1022 | srcTypeALMA( srcType, sep, obsmode ) ; |
---|
1023 | else if ( sep == "_" ) |
---|
1024 | srcTypeOldALMA( srcType, sep, obsmode, sig, ref ) ; |
---|
1025 | else |
---|
1026 | srcTypeDefault( srcType, sig, ref ) ; |
---|
1027 | |
---|
1028 | return srcType ; |
---|
1029 | } |
---|
1030 | void srcTypeDefault( Int &st, Bool &sig, Bool &ref ) |
---|
1031 | { |
---|
1032 | if ( sig ) st = SrcType::SIG ; |
---|
1033 | else if ( ref ) st = SrcType::REF ; |
---|
1034 | } |
---|
1035 | void srcTypeGBT( Int &st, String &sep, String &mode, Bool &sig, Bool &ref, Double &cal ) |
---|
1036 | { |
---|
1037 | Int epos = mode.find_first_of( sep ) ; |
---|
1038 | Int nextpos = mode.find_first_of( sep, epos+1 ) ; |
---|
1039 | String m1 = mode.substr( 0, epos ) ; |
---|
1040 | String m2 = mode.substr( epos+1, nextpos-epos-1 ) ; |
---|
1041 | if ( m1 == "Nod" ) { |
---|
1042 | st = SrcType::NOD ; |
---|
1043 | } |
---|
1044 | else if ( m1 == "OffOn" ) { |
---|
1045 | if ( m2 == "PSWITCHON" ) st = SrcType::PSON ; |
---|
1046 | if ( m2 == "PSWITCHOFF" ) st = SrcType::PSOFF ; |
---|
1047 | } |
---|
1048 | else { |
---|
1049 | if ( m2 == "FSWITCH" ) { |
---|
1050 | if ( sig ) st = SrcType::FSON ; |
---|
1051 | else if ( ref ) st = SrcType::FSOFF ; |
---|
1052 | } |
---|
1053 | } |
---|
1054 | if ( cal > 0.0 ) { |
---|
1055 | if ( st == SrcType::NOD ) |
---|
1056 | st = SrcType::NODCAL ; |
---|
1057 | else if ( st == SrcType::PSON ) |
---|
1058 | st = SrcType::PONCAL ; |
---|
1059 | else if ( st == SrcType::PSOFF ) |
---|
1060 | st = SrcType::POFFCAL ; |
---|
1061 | else if ( st == SrcType::FSON ) |
---|
1062 | st = SrcType::FONCAL ; |
---|
1063 | else if ( st == SrcType::FSOFF ) |
---|
1064 | st = SrcType::FOFFCAL ; |
---|
1065 | else |
---|
1066 | st = SrcType::CAL ; |
---|
1067 | } |
---|
1068 | } |
---|
1069 | void srcTypeALMA( Int &st, String &sep, String &mode ) |
---|
1070 | { |
---|
1071 | Int epos = mode.find_first_of( "," ) ; |
---|
1072 | String first = mode.substr( 0, epos ) ; |
---|
1073 | epos = first.find_first_of( sep ) ; |
---|
1074 | Int nextpos = first.find_first_of( sep, epos+1 ) ; |
---|
1075 | String m1 = first.substr( 0, epos ) ; |
---|
1076 | String m2 = first.substr( epos+1, nextpos-epos-1 ) ; |
---|
1077 | if ( m1.find( "CALIBRATE_" ) == 0 ) { |
---|
1078 | if ( m2.find( "ON_SOURCE" ) == 0 ) |
---|
1079 | st = SrcType::PONCAL ; |
---|
1080 | else if ( m2.find( "OFF_SOURCE" ) == 0 ) |
---|
1081 | st = SrcType::POFFCAL ; |
---|
1082 | } |
---|
1083 | else if ( m1.find( "OBSERVE_TARGET" ) == 0 ) { |
---|
1084 | if ( m2.find( "ON_SOURCE" ) == 0 ) |
---|
1085 | st = SrcType::PSON ; |
---|
1086 | else if ( m2.find( "OFF_SOURCE" ) == 0 ) |
---|
1087 | st = SrcType::PSOFF ; |
---|
1088 | } |
---|
1089 | } |
---|
1090 | void srcTypeOldALMA( Int &st, String &sep, String &mode, Bool &sig, Bool &ref ) |
---|
1091 | { |
---|
1092 | Int epos = mode.find_first_of( "," ) ; |
---|
1093 | String first = mode.substr( 0, epos ) ; |
---|
1094 | string substr[4] ; |
---|
1095 | int numSubstr = split( first, substr, 4, sep ) ; |
---|
1096 | String m1( substr[0] ) ; |
---|
1097 | String m2( substr[2] ) ; |
---|
1098 | if ( numSubstr == 4 ) { |
---|
1099 | if ( m1.find( "CALIBRATE" ) == 0 ) { |
---|
1100 | if ( m2.find( "ON" ) == 0 ) |
---|
1101 | st = SrcType::PONCAL ; |
---|
1102 | else if ( m2.find( "OFF" ) == 0 ) |
---|
1103 | st = SrcType::POFFCAL ; |
---|
1104 | } |
---|
1105 | else if ( m1.find( "OBSERVE" ) == 0 ) { |
---|
1106 | if ( m2.find( "ON" ) == 0 ) |
---|
1107 | st = SrcType::PSON ; |
---|
1108 | else if ( m2.find( "OFF" ) == 0 ) |
---|
1109 | st = SrcType::PSOFF ; |
---|
1110 | } |
---|
1111 | } |
---|
1112 | else { |
---|
1113 | if ( sig ) st = SrcType::SIG ; |
---|
1114 | else if ( ref ) st = SrcType::REF ; |
---|
1115 | } |
---|
1116 | } |
---|
1117 | Block<uInt> getPolNos( Vector<Int> &corr ) |
---|
1118 | { |
---|
1119 | Block<uInt> polnos( npol ) ; |
---|
1120 | for ( Int ipol = 0 ; ipol < npol ; ipol++ ) { |
---|
1121 | if ( corr[ipol] == Stokes::I || corr[ipol] == Stokes::RR || corr[ipol] == Stokes::XX ) |
---|
1122 | polnos[ipol] = 0 ; |
---|
1123 | else if ( corr[ipol] == Stokes::Q || corr[ipol] == Stokes::LL || corr[ipol] == Stokes::YY ) |
---|
1124 | polnos[ipol] = 1 ; |
---|
1125 | else if ( corr[ipol] == Stokes::U || corr[ipol] == Stokes::RL || corr[ipol] == Stokes::XY ) |
---|
1126 | polnos[ipol] = 2 ; |
---|
1127 | else if ( corr[ipol] == Stokes::V || corr[ipol] == Stokes::LR || corr[ipol] == Stokes::YX ) |
---|
1128 | polnos[ipol] = 3 ; |
---|
1129 | } |
---|
1130 | return polnos ; |
---|
1131 | } |
---|
1132 | String getPolType( Int &corr ) |
---|
1133 | { |
---|
1134 | String poltype = "" ; |
---|
1135 | if ( corr == Stokes::I || corr == Stokes::Q || corr == Stokes::U || corr == Stokes::V ) |
---|
1136 | poltype = "stokes" ; |
---|
1137 | else if ( corr == Stokes::XX || corr == Stokes::YY || corr == Stokes::XY || corr == Stokes::YX ) |
---|
1138 | poltype = "linear" ; |
---|
1139 | else if ( corr == Stokes::RR || corr == Stokes::LL || corr == Stokes::RL || corr == Stokes::LR ) |
---|
1140 | poltype = "circular" ; |
---|
1141 | else if ( corr == Stokes::Plinear || corr == Stokes::Pangle ) |
---|
1142 | poltype = "linpol" ; |
---|
1143 | return poltype ; |
---|
1144 | } |
---|
1145 | uInt getWeatherId() |
---|
1146 | { |
---|
1147 | // if only one row, return 0 |
---|
1148 | if ( weatherTime_.nelements() == 1 ) |
---|
1149 | return 0 ; |
---|
1150 | |
---|
1151 | // @todo At the moment, do binary search every time |
---|
1152 | // if this is bottleneck, frequency of binary search must be reduced |
---|
1153 | Double t = currentTime.get( "s" ).getValue() ; |
---|
1154 | uInt idx = min( binarySearch( weatherTime_, t ), weatherTime_.nelements()-1 ) ; |
---|
1155 | if ( weatherTime_[idx] < t ) { |
---|
1156 | if ( idx != weatherTime_.nelements()-1 ) { |
---|
1157 | if ( weatherTime_[idx+1] - t < 0.5 * weatherInterval_[idx+1] ) |
---|
1158 | idx++ ; |
---|
1159 | } |
---|
1160 | } |
---|
1161 | else if ( weatherTime_[idx] > t ) { |
---|
1162 | if ( idx != 0 ) { |
---|
1163 | if ( weatherTime_[idx] - t > 0.5 * weatherInterval_[idx] ) |
---|
1164 | idx-- ; |
---|
1165 | } |
---|
1166 | } |
---|
1167 | return weatherIndex_[idx] ; |
---|
1168 | } |
---|
1169 | void processSysCal( Int &spwId ) |
---|
1170 | { |
---|
1171 | // get feedId from row |
---|
1172 | Int feedId = (Int)tablerow.record().asuInt( "BEAMNO" ) ; |
---|
1173 | |
---|
1174 | uInt nrow = sctab.nrow() ; |
---|
1175 | ROScalarColumn<Int> col( sctab, "ANTENNA_ID" ) ; |
---|
1176 | Vector<Int> aids = col.getColumn() ; |
---|
1177 | col.attach( sctab, "FEED_ID" ) ; |
---|
1178 | Vector<Int> fids = col.getColumn() ; |
---|
1179 | col.attach( sctab, "SPECTRAL_WINDOW_ID" ) ; |
---|
1180 | Vector<Int> sids = col.getColumn() ; |
---|
1181 | ROScalarColumn<Double> timeCol( sctab, "TIME" ) ; |
---|
1182 | ROScalarColumn<Double> intCol( sctab, "INTERVAL" ) ; |
---|
1183 | for ( uInt irow = 0 ; irow < nrow ; irow++ ) { |
---|
1184 | if ( aids[irow] == antennaId |
---|
1185 | && fids[irow] == feedId |
---|
1186 | && sids[irow] == spwId ) { |
---|
1187 | syscalRow[numSysCalRow] = irow ; |
---|
1188 | syscalTime[numSysCalRow] = timeCol( irow ) ; |
---|
1189 | syscalInterval[numSysCalRow] = intCol( irow ) ; |
---|
1190 | numSysCalRow++ ; |
---|
1191 | } |
---|
1192 | } |
---|
1193 | } |
---|
1194 | uInt getSysCalIndex() |
---|
1195 | { |
---|
1196 | // if only one row, return 0 |
---|
1197 | if ( numSysCalRow == 1 || !isSysCal ) |
---|
1198 | return 0 ; |
---|
1199 | |
---|
1200 | // @todo At the moment, do binary search every time |
---|
1201 | // if this is bottleneck, frequency of binary search must be reduced |
---|
1202 | Double t = currentTime.get( "s" ).getValue() ; |
---|
1203 | Vector<Double> tslice = syscalTime( Slice(0, numSysCalRow) ) ; |
---|
1204 | uInt idx = min( binarySearch( tslice, t ), numSysCalRow-1 ) ; |
---|
1205 | if ( syscalTime[idx] < t ) { |
---|
1206 | if ( idx != numSysCalRow-1 ) { |
---|
1207 | if ( syscalTime[idx+1] - t < 0.5 * syscalInterval[idx+1] ) |
---|
1208 | idx++ ; |
---|
1209 | } |
---|
1210 | } |
---|
1211 | else if ( syscalTime[idx] > t ) { |
---|
1212 | if ( idx != 0 ) { |
---|
1213 | if ( syscalTime[idx] - t > 0.5 * syscalInterval[idx] ) |
---|
1214 | idx-- ; |
---|
1215 | } |
---|
1216 | } |
---|
1217 | return idx ; |
---|
1218 | } |
---|
1219 | Block<uInt> getTcalId( Double &t ) |
---|
1220 | { |
---|
1221 | // return 0 if no SysCal table |
---|
1222 | if ( !isSysCal or !isTcal ) { |
---|
1223 | return Block<uInt>( 4, 0 ) ; |
---|
1224 | } |
---|
1225 | |
---|
1226 | // get feedId from row |
---|
1227 | Int feedId = (Int)tablerow.record().asuInt( "BEAMNO" ) ; |
---|
1228 | |
---|
1229 | // key |
---|
1230 | String key = keyTcal( feedId, spwId, t ) ; |
---|
1231 | |
---|
1232 | // retrieve ids |
---|
1233 | Vector<uInt> ids = syscalRecord.asArrayuInt( key ) ; |
---|
1234 | //Vector<uInt> ids = syscalRecord[key] ; |
---|
1235 | uInt np = ids[1] - ids[0] + 1 ; |
---|
1236 | Block<uInt> tcalids( np ) ; |
---|
1237 | if ( np > 0 ) { |
---|
1238 | tcalids[0] = ids[0] ; |
---|
1239 | if ( np > 1 ) { |
---|
1240 | tcalids[1] = ids[1] ; |
---|
1241 | for ( uInt ip = 2 ; ip < np ; ip++ ) |
---|
1242 | tcalids[ip] = ids[0] + ip - 1 ; |
---|
1243 | } |
---|
1244 | } |
---|
1245 | return tcalids ; |
---|
1246 | } |
---|
1247 | Block<uInt> getDummyTcalId( Int spwId ) |
---|
1248 | { |
---|
1249 | Block<uInt> idList(4, 0); |
---|
1250 | uInt nfields = syscalRecord.nfields(); |
---|
1251 | Int idx = -1; |
---|
1252 | for (uInt i = 0; i< nfields ; i++ ) { |
---|
1253 | String spw = "SPW" + String::toString(spwId); |
---|
1254 | if (syscalRecord.name(i).find(spw) != String::npos) { |
---|
1255 | idx = i; |
---|
1256 | break; |
---|
1257 | } |
---|
1258 | } |
---|
1259 | if ( idx > -1) { |
---|
1260 | Vector<uInt> tmp = syscalRecord.asArrayuInt(idx); |
---|
1261 | for (uInt j = 0 ; j < 4 ; j++) { |
---|
1262 | idList[j] = tmp[0]; |
---|
1263 | } |
---|
1264 | } |
---|
1265 | return idList; |
---|
1266 | } |
---|
1267 | uInt maxNumPol() |
---|
1268 | { |
---|
1269 | ROScalarColumn<Int> numCorrCol( poltab, "NUM_CORR" ) ; |
---|
1270 | return max( numCorrCol.getColumn() ) ; |
---|
1271 | } |
---|
1272 | |
---|
1273 | Scantable &scantable; |
---|
1274 | Int antennaId; |
---|
1275 | uInt rowidx; |
---|
1276 | String dataColumnName; |
---|
1277 | TableRow tablerow; |
---|
1278 | STHeader header; |
---|
1279 | Vector<Int> feedEntry; |
---|
1280 | uInt nbeam; |
---|
1281 | Int npol; |
---|
1282 | Int nchan; |
---|
1283 | Int sourceId; |
---|
1284 | Int polId; |
---|
1285 | Int spwId; |
---|
1286 | uInt cycleNo; |
---|
1287 | MDirection sourceDir; |
---|
1288 | MPosition antpos; |
---|
1289 | MEpoch currentTime; |
---|
1290 | MEpoch obsEpoch; |
---|
1291 | MeasFrame mf; |
---|
1292 | MDirection::Convert toj2000; |
---|
1293 | MDirection::Convert toazel; |
---|
1294 | map<Int,uInt> ifmap; |
---|
1295 | Block<uInt> polnos; |
---|
1296 | Bool getpt; |
---|
1297 | Vector<Double> pointingTime; |
---|
1298 | Cube<Double> pointingDirection; |
---|
1299 | MDirection::Types dirType; |
---|
1300 | Bool isWeather_; |
---|
1301 | Vector<Double> weatherTime_; |
---|
1302 | Vector<Double> weatherInterval_; |
---|
1303 | Vector<uInt> weatherIndex_; |
---|
1304 | Bool isSysCal; |
---|
1305 | Bool isTcal; |
---|
1306 | Record syscalRecord; |
---|
1307 | //map< String,Vector<uInt> > syscalRecord; |
---|
1308 | uInt numSysCalRow ; |
---|
1309 | Vector<uInt> syscalRow; |
---|
1310 | Vector<Double> syscalTime; |
---|
1311 | Vector<Double> syscalInterval; |
---|
1312 | //String tsysCol; |
---|
1313 | //String tcalCol; |
---|
1314 | |
---|
1315 | // MS subtables |
---|
1316 | Table obstab; |
---|
1317 | Table sctab; |
---|
1318 | Table spwtab; |
---|
1319 | Table statetab; |
---|
1320 | Table ddtab; |
---|
1321 | Table poltab; |
---|
1322 | Table fieldtab; |
---|
1323 | Table anttab; |
---|
1324 | Table srctab; |
---|
1325 | Matrix<Float> sp; |
---|
1326 | Matrix<uChar> fl; |
---|
1327 | |
---|
1328 | // MS MAIN columns |
---|
1329 | ROTableColumn intervalCol; |
---|
1330 | ROTableColumn flagRowCol; |
---|
1331 | ROArrayColumn<Float> floatDataCol; |
---|
1332 | ROArrayColumn<Complex> dataCol; |
---|
1333 | ROArrayColumn<Bool> flagCol; |
---|
1334 | |
---|
1335 | // MS SYSCAL columns |
---|
1336 | ROArrayColumn<Float> sysCalTsysCol; |
---|
1337 | |
---|
1338 | // Scantable MAIN columns |
---|
1339 | RecordFieldPtr<Double> timeRF,intervalRF,sourceVelocityRF; |
---|
1340 | RecordFieldPtr< Vector<Double> > directionRF,scanRateRF, |
---|
1341 | sourceProperMotionRF,sourceDirectionRF; |
---|
1342 | RecordFieldPtr<Float> azimuthRF,elevationRF; |
---|
1343 | RecordFieldPtr<uInt> weatherIdRF,cycleNoRF,flagRowRF,polNoRF,tcalIdRF, |
---|
1344 | ifNoRF,freqIdRF,moleculeIdRF,beamNoRF,focusIdRF,scanNoRF; |
---|
1345 | RecordFieldPtr< Vector<Float> > spectraRF,tsysRF; |
---|
1346 | RecordFieldPtr< Vector<uChar> > flagtraRF; |
---|
1347 | RecordFieldPtr<String> sourceNameRF,fieldNameRF; |
---|
1348 | RecordFieldPtr<Int> sourceTypeRF; |
---|
1349 | }; |
---|
1350 | |
---|
1351 | class BaseTcalVisitor: public TableVisitor { |
---|
1352 | uInt lastRecordNo ; |
---|
1353 | Int lastAntennaId ; |
---|
1354 | Int lastFeedId ; |
---|
1355 | Int lastSpwId ; |
---|
1356 | Double lastTime ; |
---|
1357 | protected: |
---|
1358 | const Table &table; |
---|
1359 | uInt count; |
---|
1360 | public: |
---|
1361 | BaseTcalVisitor(const Table &table) |
---|
1362 | : table(table) |
---|
1363 | { |
---|
1364 | count = 0; |
---|
1365 | } |
---|
1366 | |
---|
1367 | virtual void enterAntennaId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1368 | virtual void leaveAntennaId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1369 | virtual void enterFeedId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1370 | virtual void leaveFeedId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1371 | virtual void enterSpwId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1372 | virtual void leaveSpwId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1373 | virtual void enterTime(const uInt /*recordNo*/, Double /*columnValue*/) { } |
---|
1374 | virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) { } |
---|
1375 | |
---|
1376 | virtual Bool visitRecord(const uInt /*recordNo*/, |
---|
1377 | const Int /*antennaId*/, |
---|
1378 | const Int /*feedId*/, |
---|
1379 | const Int /*spwId*/, |
---|
1380 | const Double /*time*/) { return True ; } |
---|
1381 | |
---|
1382 | virtual Bool visit(Bool isFirst, const uInt recordNo, |
---|
1383 | const uInt nCols, void const *const colValues[]) { |
---|
1384 | Int antennaId, feedId, spwId; |
---|
1385 | Double time; |
---|
1386 | { // prologue |
---|
1387 | uInt i = 0; |
---|
1388 | { |
---|
1389 | const Int *col = (const Int *)colValues[i++]; |
---|
1390 | antennaId = col[recordNo]; |
---|
1391 | } |
---|
1392 | { |
---|
1393 | const Int *col = (const Int *)colValues[i++]; |
---|
1394 | feedId = col[recordNo]; |
---|
1395 | } |
---|
1396 | { |
---|
1397 | const Int *col = (const Int *)colValues[i++]; |
---|
1398 | spwId = col[recordNo]; |
---|
1399 | } |
---|
1400 | { |
---|
1401 | const Double *col = (const Double *)colValues[i++]; |
---|
1402 | time = col[recordNo]; |
---|
1403 | } |
---|
1404 | assert(nCols == i); |
---|
1405 | } |
---|
1406 | |
---|
1407 | if (isFirst) { |
---|
1408 | enterAntennaId(recordNo, antennaId); |
---|
1409 | enterFeedId(recordNo, feedId); |
---|
1410 | enterSpwId(recordNo, spwId); |
---|
1411 | enterTime(recordNo, time); |
---|
1412 | } else { |
---|
1413 | if ( lastAntennaId != antennaId ) { |
---|
1414 | leaveTime(lastRecordNo, lastTime); |
---|
1415 | leaveSpwId(lastRecordNo, lastSpwId); |
---|
1416 | leaveFeedId(lastRecordNo, lastFeedId); |
---|
1417 | leaveAntennaId(lastRecordNo, lastAntennaId); |
---|
1418 | |
---|
1419 | enterAntennaId(recordNo, antennaId); |
---|
1420 | enterFeedId(recordNo, feedId); |
---|
1421 | enterSpwId(recordNo, spwId); |
---|
1422 | enterTime(recordNo, time); |
---|
1423 | } |
---|
1424 | else if (lastFeedId != feedId) { |
---|
1425 | leaveTime(lastRecordNo, lastTime); |
---|
1426 | leaveSpwId(lastRecordNo, lastSpwId); |
---|
1427 | leaveFeedId(lastRecordNo, lastFeedId); |
---|
1428 | |
---|
1429 | enterFeedId(recordNo, feedId); |
---|
1430 | enterSpwId(recordNo, spwId); |
---|
1431 | enterTime(recordNo, time); |
---|
1432 | } else if (lastSpwId != spwId) { |
---|
1433 | leaveTime(lastRecordNo, lastTime); |
---|
1434 | leaveSpwId(lastRecordNo, lastSpwId); |
---|
1435 | |
---|
1436 | enterSpwId(recordNo, spwId); |
---|
1437 | enterTime(recordNo, time); |
---|
1438 | } else if (lastTime != time) { |
---|
1439 | leaveTime(lastRecordNo, lastTime); |
---|
1440 | enterTime(recordNo, time); |
---|
1441 | } |
---|
1442 | } |
---|
1443 | count++; |
---|
1444 | Bool result = visitRecord(recordNo, antennaId, feedId, spwId, time); |
---|
1445 | |
---|
1446 | { // epilogue |
---|
1447 | lastRecordNo = recordNo; |
---|
1448 | |
---|
1449 | lastAntennaId = antennaId; |
---|
1450 | lastFeedId = feedId; |
---|
1451 | lastSpwId = spwId; |
---|
1452 | lastTime = time; |
---|
1453 | } |
---|
1454 | return result ; |
---|
1455 | } |
---|
1456 | |
---|
1457 | virtual void finish() { |
---|
1458 | if (count > 0) { |
---|
1459 | leaveTime(lastRecordNo, lastTime); |
---|
1460 | leaveSpwId(lastRecordNo, lastSpwId); |
---|
1461 | leaveFeedId(lastRecordNo, lastFeedId); |
---|
1462 | leaveAntennaId(lastRecordNo, lastAntennaId); |
---|
1463 | } |
---|
1464 | } |
---|
1465 | }; |
---|
1466 | |
---|
1467 | class TcalVisitor: public BaseTcalVisitor, public MSFillerUtils { |
---|
1468 | public: |
---|
1469 | TcalVisitor(const Table &table, Table &tcaltab, Record &r, Int aid ) |
---|
1470 | //TcalVisitor(const Table &table, Table &tcaltab, map< String,Vector<uInt> > &r, Int aid ) |
---|
1471 | : BaseTcalVisitor( table ), |
---|
1472 | tcal(tcaltab), |
---|
1473 | rec(r), |
---|
1474 | antenna(aid) |
---|
1475 | { |
---|
1476 | process = False ; |
---|
1477 | rowidx = 0 ; |
---|
1478 | |
---|
1479 | // attach to SYSCAL columns |
---|
1480 | timeCol.attach( table, "TIME" ) ; |
---|
1481 | |
---|
1482 | // add rows |
---|
1483 | uInt addrow = table.nrow() * 4 ; |
---|
1484 | tcal.addRow( addrow ) ; |
---|
1485 | |
---|
1486 | // attach to TCAL columns |
---|
1487 | row = TableRow( tcal ) ; |
---|
1488 | TableRecord &trec = row.record() ; |
---|
1489 | idRF.attachToRecord( trec, "ID" ) ; |
---|
1490 | timeRF.attachToRecord( trec, "TIME" ) ; |
---|
1491 | tcalRF.attachToRecord( trec, "TCAL" ) ; |
---|
1492 | } |
---|
1493 | |
---|
1494 | virtual void enterAntennaId(const uInt /*recordNo*/, Int columnValue) { |
---|
1495 | if ( columnValue == antenna ) |
---|
1496 | process = True ; |
---|
1497 | } |
---|
1498 | virtual void leaveAntennaId(const uInt /*recordNo*/, Int /*columnValue*/) { |
---|
1499 | process = False ; |
---|
1500 | } |
---|
1501 | virtual void enterFeedId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1502 | virtual void leaveFeedId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1503 | virtual void enterSpwId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1504 | virtual void leaveSpwId(const uInt /*recordNo*/, Int /*columnValue*/) { } |
---|
1505 | virtual void enterTime(const uInt recordNo, Double /*columnValue*/) { |
---|
1506 | qtime = timeCol( recordNo ) ; |
---|
1507 | } |
---|
1508 | virtual void leaveTime(const uInt /*recordNo*/, Double /*columnValue*/) { } |
---|
1509 | virtual Bool visitRecord(const uInt recordNo, |
---|
1510 | const Int /*antennaId*/, |
---|
1511 | const Int feedId, |
---|
1512 | const Int spwId, |
---|
1513 | const Double /*time*/) |
---|
1514 | { |
---|
1515 | //cout << "(" << recordNo << "," << antennaId << "," << feedId << "," << spwId << ")" << endl ; |
---|
1516 | if ( process ) { |
---|
1517 | String sTime = MVTime( qtime ).string( MVTime::YMD ) ; |
---|
1518 | *timeRF = sTime ; |
---|
1519 | uInt oldidx = rowidx ; |
---|
1520 | Matrix<Float> subtcal = tcalCol( recordNo ) ; |
---|
1521 | Vector<uInt> idminmax( 2 ) ; |
---|
1522 | for ( uInt ipol = 0 ; ipol < subtcal.nrow() ; ipol++ ) { |
---|
1523 | *idRF = rowidx ; |
---|
1524 | tcalRF.define( subtcal.row( ipol ) ) ; |
---|
1525 | |
---|
1526 | // commit row |
---|
1527 | row.put( rowidx ) ; |
---|
1528 | rowidx++ ; |
---|
1529 | } |
---|
1530 | |
---|
1531 | idminmax[0] = oldidx ; |
---|
1532 | idminmax[1] = rowidx - 1 ; |
---|
1533 | |
---|
1534 | String key = keyTcal( feedId, spwId, sTime ) ; |
---|
1535 | rec.define( key, idminmax ) ; |
---|
1536 | //rec[key] = idminmax ; |
---|
1537 | } |
---|
1538 | return True ; |
---|
1539 | } |
---|
1540 | virtual void finish() |
---|
1541 | { |
---|
1542 | BaseTcalVisitor::finish() ; |
---|
1543 | |
---|
1544 | if ( tcal.nrow() > rowidx ) { |
---|
1545 | uInt numRemove = tcal.nrow() - rowidx ; |
---|
1546 | //cout << "numRemove = " << numRemove << endl ; |
---|
1547 | Vector<uInt> rows( numRemove ) ; |
---|
1548 | indgen( rows, rowidx ) ; |
---|
1549 | tcal.removeRow( rows ) ; |
---|
1550 | } |
---|
1551 | |
---|
1552 | } |
---|
1553 | void setTcalColumn( String &col ) |
---|
1554 | { |
---|
1555 | //colName = col ; |
---|
1556 | tcalCol.attach( table, col ) ; |
---|
1557 | } |
---|
1558 | private: |
---|
1559 | Table &tcal; |
---|
1560 | Record &rec; |
---|
1561 | //map< String,Vector<uInt> > &rec; |
---|
1562 | Int antenna; |
---|
1563 | uInt rowidx; |
---|
1564 | Bool process; |
---|
1565 | Quantum<Double> qtime; |
---|
1566 | TableRow row; |
---|
1567 | String colName; |
---|
1568 | |
---|
1569 | // MS SYSCAL columns |
---|
1570 | ROScalarQuantColumn<Double> timeCol; |
---|
1571 | ROArrayColumn<Float> tcalCol; |
---|
1572 | |
---|
1573 | // TCAL columns |
---|
1574 | RecordFieldPtr<uInt> idRF; |
---|
1575 | RecordFieldPtr<String> timeRF; |
---|
1576 | RecordFieldPtr< Vector<Float> > tcalRF; |
---|
1577 | }; |
---|
1578 | |
---|
1579 | MSFiller::MSFiller( casa::CountedPtr<Scantable> stable ) |
---|
1580 | : table_( stable ), |
---|
1581 | tablename_( "" ), |
---|
1582 | antenna_( -1 ), |
---|
1583 | antennaStr_(""), |
---|
1584 | getPt_( True ), |
---|
1585 | isFloatData_( False ), |
---|
1586 | isData_( False ), |
---|
1587 | isDoppler_( False ), |
---|
1588 | isFlagCmd_( False ), |
---|
1589 | isFreqOffset_( False ), |
---|
1590 | isHistory_( False ), |
---|
1591 | isProcessor_( False ), |
---|
1592 | isSysCal_( False ), |
---|
1593 | isWeather_( False ), |
---|
1594 | colTsys_( "TSYS_SPECTRUM" ), |
---|
1595 | colTcal_( "TCAL_SPECTRUM" ) |
---|
1596 | { |
---|
1597 | os_ = LogIO() ; |
---|
1598 | os_.origin( LogOrigin( "MSFiller", "MSFiller()", WHERE ) ) ; |
---|
1599 | } |
---|
1600 | |
---|
1601 | MSFiller::~MSFiller() |
---|
1602 | { |
---|
1603 | os_.origin( LogOrigin( "MSFiller", "~MSFiller()", WHERE ) ) ; |
---|
1604 | } |
---|
1605 | |
---|
1606 | bool MSFiller::open( const std::string &filename, const casa::Record &rec ) |
---|
1607 | { |
---|
1608 | os_.origin( LogOrigin( "MSFiller", "open()", WHERE ) ) ; |
---|
1609 | //double startSec = mathutil::gettimeofday_sec() ; |
---|
1610 | //os_ << "start MSFiller::open() startsec=" << startSec << LogIO::POST ; |
---|
1611 | //os_ << " filename = " << filename << endl ; |
---|
1612 | |
---|
1613 | // parsing MS options |
---|
1614 | if ( rec.isDefined( "ms" ) ) { |
---|
1615 | Record msrec = rec.asRecord( "ms" ) ; |
---|
1616 | if ( msrec.isDefined( "getpt" ) ) { |
---|
1617 | getPt_ = msrec.asBool( "getpt" ) ; |
---|
1618 | } |
---|
1619 | if ( msrec.isDefined( "antenna" ) ) { |
---|
1620 | if ( msrec.type( msrec.fieldNumber( "antenna" ) ) == TpInt ) { |
---|
1621 | antenna_ = msrec.asInt( "antenna" ) ; |
---|
1622 | } |
---|
1623 | else { |
---|
1624 | //antenna_ = atoi( msrec.asString( "antenna" ).c_str() ) ; |
---|
1625 | antennaStr_ = msrec.asString( "antenna" ) ; |
---|
1626 | } |
---|
1627 | } |
---|
1628 | else { |
---|
1629 | antenna_ = 0 ; |
---|
1630 | } |
---|
1631 | } |
---|
1632 | |
---|
1633 | MeasurementSet *tmpMS = new MeasurementSet( filename, Table::Old ) ; |
---|
1634 | tablename_ = tmpMS->tableName() ; |
---|
1635 | if ( antenna_ == -1 && antennaStr_.size() > 0 ) { |
---|
1636 | MSAntennaIndex msAntIdx( tmpMS->antenna() ) ; |
---|
1637 | Vector<Int> id = msAntIdx.matchAntennaName( antennaStr_ ) ; |
---|
1638 | if ( id.size() > 0 ) |
---|
1639 | antenna_ = id[0] ; |
---|
1640 | else { |
---|
1641 | delete tmpMS ; |
---|
1642 | //throw( AipsError( "Antenna " + antennaStr_ + " doesn't exist." ) ) ; |
---|
1643 | os_ << LogIO::SEVERE << "Antenna " << antennaStr_ << " doesn't exist." << LogIO::POST ; |
---|
1644 | return False ; |
---|
1645 | } |
---|
1646 | } |
---|
1647 | |
---|
1648 | os_ << "Parsing MS options" << endl ; |
---|
1649 | os_ << " getPt = " << (getPt_ ? "True" : "False") << endl ; |
---|
1650 | os_ << " antenna = " << antenna_ << endl ; |
---|
1651 | os_ << " antennaStr = " << antennaStr_ << LogIO::POST; |
---|
1652 | |
---|
1653 | mstable_ = MeasurementSet( (*tmpMS)( tmpMS->col("ANTENNA1") == antenna_ |
---|
1654 | && tmpMS->col("ANTENNA1") == tmpMS->col("ANTENNA2") ) ) ; |
---|
1655 | |
---|
1656 | delete tmpMS ; |
---|
1657 | |
---|
1658 | // check which data column exists |
---|
1659 | isFloatData_ = mstable_.tableDesc().isColumn( "FLOAT_DATA" ) ; |
---|
1660 | isData_ = mstable_.tableDesc().isColumn( "DATA" ) ; |
---|
1661 | |
---|
1662 | //double endSec = mathutil::gettimeofday_sec() ; |
---|
1663 | //os_ << "end MSFiller::open() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; |
---|
1664 | return true ; |
---|
1665 | } |
---|
1666 | |
---|
1667 | void MSFiller::fill() |
---|
1668 | { |
---|
1669 | //double startSec = mathutil::gettimeofday_sec() ; |
---|
1670 | //os_ << "start MSFiller::fill() startSec=" << startSec << LogIO::POST ; |
---|
1671 | |
---|
1672 | os_.origin( LogOrigin( "MSFiller", "fill()", WHERE ) ) ; |
---|
1673 | |
---|
1674 | // Initialize header |
---|
1675 | STHeader sdh ; |
---|
1676 | initHeader( sdh ) ; |
---|
1677 | table_->setHeader( sdh ) ; |
---|
1678 | |
---|
1679 | // check if optional table exists |
---|
1680 | const TableRecord &msrec = mstable_.keywordSet() ; |
---|
1681 | isDoppler_ = msrec.isDefined( "DOPPLER" ) ; |
---|
1682 | if ( isDoppler_ ) |
---|
1683 | if ( mstable_.doppler().nrow() == 0 ) |
---|
1684 | isDoppler_ = False ; |
---|
1685 | isFlagCmd_ = msrec.isDefined( "FLAG_CMD" ) ; |
---|
1686 | if ( isFlagCmd_ ) |
---|
1687 | if ( mstable_.flagCmd().nrow() == 0 ) |
---|
1688 | isFlagCmd_ = False ; |
---|
1689 | isFreqOffset_ = msrec.isDefined( "FREQ_OFFSET" ) ; |
---|
1690 | if ( isFreqOffset_ ) |
---|
1691 | if ( mstable_.freqOffset().nrow() == 0 ) |
---|
1692 | isFreqOffset_ = False ; |
---|
1693 | isHistory_ = msrec.isDefined( "HISTORY" ) ; |
---|
1694 | if ( isHistory_ ) |
---|
1695 | if ( mstable_.history().nrow() == 0 ) |
---|
1696 | isHistory_ = False ; |
---|
1697 | isProcessor_ = msrec.isDefined( "PROCESSOR" ) ; |
---|
1698 | if ( isProcessor_ ) |
---|
1699 | if ( mstable_.processor().nrow() == 0 ) |
---|
1700 | isProcessor_ = False ; |
---|
1701 | isSysCal_ = msrec.isDefined( "SYSCAL" ) ; |
---|
1702 | if ( isSysCal_ ) |
---|
1703 | if ( mstable_.sysCal().nrow() == 0 ) |
---|
1704 | isSysCal_ = False ; |
---|
1705 | isWeather_ = msrec.isDefined( "WEATHER" ) ; |
---|
1706 | if ( isWeather_ ) |
---|
1707 | if ( mstable_.weather().nrow() == 0 ) |
---|
1708 | isWeather_ = False ; |
---|
1709 | |
---|
1710 | // column name for Tsys and Tcal |
---|
1711 | if ( isSysCal_ ) { |
---|
1712 | const MSSysCal &caltab = mstable_.sysCal() ; |
---|
1713 | if ( !caltab.tableDesc().isColumn( colTcal_ ) ) { |
---|
1714 | colTcal_ = "TCAL" ; |
---|
1715 | if ( !caltab.tableDesc().isColumn( colTcal_ ) ) |
---|
1716 | colTcal_ = "NONE" ; |
---|
1717 | } |
---|
1718 | if ( !caltab.tableDesc().isColumn( colTsys_ ) ) { |
---|
1719 | colTsys_ = "TSYS" ; |
---|
1720 | if ( !caltab.tableDesc().isColumn( colTcal_ ) ) |
---|
1721 | colTsys_ = "NONE" ; |
---|
1722 | } |
---|
1723 | } |
---|
1724 | else { |
---|
1725 | colTcal_ = "NONE" ; |
---|
1726 | colTsys_ = "NONE" ; |
---|
1727 | } |
---|
1728 | |
---|
1729 | // Access to MS subtables |
---|
1730 | //MSField &fieldtab = mstable_.field() ; |
---|
1731 | //MSPolarization &poltab = mstable_.polarization() ; |
---|
1732 | //MSDataDescription &ddtab = mstable_.dataDescription() ; |
---|
1733 | //MSObservation &obstab = mstable_.observation() ; |
---|
1734 | //MSSource &srctab = mstable_.source() ; |
---|
1735 | //MSSpectralWindow &spwtab = mstable_.spectralWindow() ; |
---|
1736 | //MSSysCal &caltab = mstable_.sysCal() ; |
---|
1737 | MSPointing &pointtab = mstable_.pointing() ; |
---|
1738 | //MSState &stattab = mstable_.state() ; |
---|
1739 | //MSAntenna &anttab = mstable_.antenna() ; |
---|
1740 | |
---|
1741 | // SUBTABLES: FREQUENCIES |
---|
1742 | //string freqFrame = getFrame() ; |
---|
1743 | string baseFrame = frameFromSpwTable() ; |
---|
1744 | table_->frequencies().setFrame( baseFrame ) ; |
---|
1745 | table_->frequencies().setFrame( baseFrame, True ) ; |
---|
1746 | |
---|
1747 | // SUBTABLES: WEATHER |
---|
1748 | fillWeather() ; |
---|
1749 | |
---|
1750 | // SUBTABLES: FOCUS |
---|
1751 | fillFocus() ; |
---|
1752 | |
---|
1753 | // SUBTABLES: TCAL |
---|
1754 | fillTcal() ; |
---|
1755 | |
---|
1756 | // SUBTABLES: FIT |
---|
1757 | //fillFit() ; |
---|
1758 | |
---|
1759 | // SUBTABLES: HISTORY |
---|
1760 | //fillHistory() ; |
---|
1761 | |
---|
1762 | /*** |
---|
1763 | * Start iteration using TableVisitor |
---|
1764 | ***/ |
---|
1765 | Table stab = table_->table() ; |
---|
1766 | { |
---|
1767 | static const char *cols[] = { |
---|
1768 | "OBSERVATION_ID", "FEED1", "FIELD_ID", "DATA_DESC_ID", "SCAN_NUMBER", |
---|
1769 | "STATE_ID", "TIME", |
---|
1770 | NULL |
---|
1771 | }; |
---|
1772 | static const TypeManagerImpl<Int> tmInt; |
---|
1773 | static const TypeManagerImpl<Double> tmDouble; |
---|
1774 | static const TypeManager *const tms[] = { |
---|
1775 | &tmInt, &tmInt, &tmInt, &tmInt, &tmInt, &tmInt, &tmDouble, NULL |
---|
1776 | }; |
---|
1777 | //double t0 = mathutil::gettimeofday_sec() ; |
---|
1778 | MSFillerVisitor myVisitor(mstable_, *table_ ); |
---|
1779 | //double t1 = mathutil::gettimeofday_sec() ; |
---|
1780 | //cout << "MSFillerVisitor(): elapsed time " << t1-t0 << " sec" << endl ; |
---|
1781 | myVisitor.setAntenna( antenna_ ) ; |
---|
1782 | //myVisitor.setHeader( sdh ) ; |
---|
1783 | if ( getPt_ ) { |
---|
1784 | Table ptsel = pointtab( pointtab.col("ANTENNA_ID")==antenna_ ).sort( "TIME" ) ; |
---|
1785 | myVisitor.setPointingTable( ptsel ) ; |
---|
1786 | } |
---|
1787 | if ( isWeather_ ) |
---|
1788 | myVisitor.setWeatherTime( mwTime_, mwInterval_, mwIndex_ ) ; |
---|
1789 | if ( isSysCal_ ) |
---|
1790 | myVisitor.setSysCalRecord( tcalrec_ ) ; |
---|
1791 | |
---|
1792 | //double t2 = mathutil::gettimeofday_sec() ; |
---|
1793 | traverseTable(mstable_, cols, tms, &myVisitor); |
---|
1794 | //double t3 = mathutil::gettimeofday_sec() ; |
---|
1795 | //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ; |
---|
1796 | |
---|
1797 | sdh = myVisitor.getHeader() ; |
---|
1798 | } |
---|
1799 | /*** |
---|
1800 | * End iteration using TableVisitor |
---|
1801 | ***/ |
---|
1802 | |
---|
1803 | // set header |
---|
1804 | //sdh = myVisitor.getHeader() ; |
---|
1805 | //table_->setHeader( sdh ) ; |
---|
1806 | |
---|
1807 | // save path to POINTING table |
---|
1808 | // 2011/07/06 TN |
---|
1809 | // Path to POINTING table in original MS will not be written |
---|
1810 | // if getPt_ is True |
---|
1811 | Path datapath( tablename_ ) ; |
---|
1812 | if ( !getPt_ ) { |
---|
1813 | String pTabName = datapath.absoluteName() + "/POINTING" ; |
---|
1814 | stab.rwKeywordSet().define( "POINTING", pTabName ) ; |
---|
1815 | } |
---|
1816 | |
---|
1817 | // for GBT |
---|
1818 | if ( sdh.antennaname.contains( "GBT" ) ) { |
---|
1819 | String goTabName = datapath.absoluteName() + "/GBT_GO" ; |
---|
1820 | stab.rwKeywordSet().define( "GBT_GO", goTabName ) ; |
---|
1821 | } |
---|
1822 | |
---|
1823 | // for MS created from ASDM |
---|
1824 | const TableRecord &msKeys = mstable_.keywordSet() ; |
---|
1825 | uInt nfields = msKeys.nfields() ; |
---|
1826 | for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) { |
---|
1827 | String name = msKeys.name( ifield ) ; |
---|
1828 | //os_ << "name = " << name << LogIO::POST ; |
---|
1829 | if ( name.find( "ASDM" ) != String::npos ) { |
---|
1830 | String asdmpath = msKeys.asTable( ifield ).tableName() ; |
---|
1831 | os_ << "ASDM table: " << asdmpath << LogIO::POST ; |
---|
1832 | stab.rwKeywordSet().define( name, asdmpath ) ; |
---|
1833 | } |
---|
1834 | } |
---|
1835 | |
---|
1836 | //double endSec = mathutil::gettimeofday_sec() ; |
---|
1837 | //os_ << "end MSFiller::fill() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; |
---|
1838 | } |
---|
1839 | |
---|
1840 | void MSFiller::close() |
---|
1841 | { |
---|
1842 | //tablesel_.closeSubTables() ; |
---|
1843 | mstable_.closeSubTables() ; |
---|
1844 | //tablesel_.unlock() ; |
---|
1845 | mstable_.unlock() ; |
---|
1846 | } |
---|
1847 | |
---|
1848 | void MSFiller::fillWeather() |
---|
1849 | { |
---|
1850 | //double startSec = mathutil::gettimeofday_sec() ; |
---|
1851 | //os_ << "start MSFiller::fillWeather() startSec=" << startSec << LogIO::POST ; |
---|
1852 | |
---|
1853 | if ( !isWeather_ ) { |
---|
1854 | // add dummy row |
---|
1855 | table_->weather().table().addRow(1,True) ; |
---|
1856 | return ; |
---|
1857 | } |
---|
1858 | |
---|
1859 | Table mWeather = mstable_.weather() ; |
---|
1860 | //Table mWeatherSel = mWeather( mWeather.col("ANTENNA_ID") == antenna_ ).sort("TIME") ; |
---|
1861 | Table mWeatherSel( mWeather( mWeather.col("ANTENNA_ID") == antenna_ ).sort("TIME") ) ; |
---|
1862 | //os_ << "mWeatherSel.nrow() = " << mWeatherSel.nrow() << LogIO::POST ; |
---|
1863 | if ( mWeatherSel.nrow() == 0 ) { |
---|
1864 | os_ << "No rows with ANTENNA_ID = " << antenna_ << " in WEATHER table, Try -1..." << LogIO::POST ; |
---|
1865 | mWeatherSel = Table( MSWeather( mWeather( mWeather.col("ANTENNA_ID") == -1 ) ) ) ; |
---|
1866 | if ( mWeatherSel.nrow() == 0 ) { |
---|
1867 | os_ << "No rows in WEATHER table" << LogIO::POST ; |
---|
1868 | } |
---|
1869 | } |
---|
1870 | uInt wnrow = mWeatherSel.nrow() ; |
---|
1871 | //os_ << "wnrow = " << wnrow << LogIO::POST ; |
---|
1872 | |
---|
1873 | if ( wnrow == 0 ) |
---|
1874 | return ; |
---|
1875 | |
---|
1876 | Table wtab = table_->weather().table() ; |
---|
1877 | wtab.addRow( wnrow ) ; |
---|
1878 | |
---|
1879 | Bool stationInfoExists = mWeatherSel.tableDesc().isColumn( "NS_WX_STATION_ID" ) ; |
---|
1880 | Int stationId = -1 ; |
---|
1881 | if ( stationInfoExists ) { |
---|
1882 | // determine which station is closer |
---|
1883 | ROScalarColumn<Int> stationCol( mWeatherSel, "NS_WX_STATION_ID" ) ; |
---|
1884 | ROArrayColumn<Double> stationPosCol( mWeatherSel, "NS_WX_STATION_POSITION" ) ; |
---|
1885 | Vector<Int> stationIds = stationCol.getColumn() ; |
---|
1886 | Vector<Int> stationIdList( 0 ) ; |
---|
1887 | Matrix<Double> stationPosList( 0, 3, 0.0 ) ; |
---|
1888 | uInt numStation = 0 ; |
---|
1889 | for ( uInt i = 0 ; i < stationIds.size() ; i++ ) { |
---|
1890 | if ( !anyEQ( stationIdList, stationIds[i] ) ) { |
---|
1891 | numStation++ ; |
---|
1892 | stationIdList.resize( numStation, True ) ; |
---|
1893 | stationIdList[numStation-1] = stationIds[i] ; |
---|
1894 | stationPosList.resize( numStation, 3, True ) ; |
---|
1895 | stationPosList.row( numStation-1 ) = stationPosCol( i ) ; |
---|
1896 | } |
---|
1897 | } |
---|
1898 | //os_ << "staionIdList = " << stationIdList << endl ; |
---|
1899 | Table mAntenna = mstable_.antenna() ; |
---|
1900 | ROArrayColumn<Double> antposCol( mAntenna, "POSITION" ) ; |
---|
1901 | Vector<Double> antpos = antposCol( antenna_ ) ; |
---|
1902 | Double minDiff = -1.0 ; |
---|
1903 | for ( uInt i = 0 ; i < stationIdList.size() ; i++ ) { |
---|
1904 | Double diff = sum( square( antpos - stationPosList.row( i ) ) ) ; |
---|
1905 | if ( minDiff < 0.0 || minDiff > diff ) { |
---|
1906 | minDiff = diff ; |
---|
1907 | stationId = stationIdList[i] ; |
---|
1908 | } |
---|
1909 | } |
---|
1910 | } |
---|
1911 | //os_ << "stationId = " << stationId << endl ; |
---|
1912 | |
---|
1913 | ScalarColumn<Float> *fCol ; |
---|
1914 | ROScalarColumn<Float> *sharedFloatCol ; |
---|
1915 | if ( mWeatherSel.tableDesc().isColumn( "TEMPERATURE" ) ) { |
---|
1916 | fCol = new ScalarColumn<Float>( wtab, "TEMPERATURE" ) ; |
---|
1917 | sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "TEMPERATURE" ) ; |
---|
1918 | fCol->putColumn( *sharedFloatCol ) ; |
---|
1919 | delete sharedFloatCol ; |
---|
1920 | delete fCol ; |
---|
1921 | } |
---|
1922 | if ( mWeatherSel.tableDesc().isColumn( "PRESSURE" ) ) { |
---|
1923 | fCol = new ScalarColumn<Float>( wtab, "PRESSURE" ) ; |
---|
1924 | sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "PRESSURE" ) ; |
---|
1925 | fCol->putColumn( *sharedFloatCol ) ; |
---|
1926 | delete sharedFloatCol ; |
---|
1927 | delete fCol ; |
---|
1928 | } |
---|
1929 | if ( mWeatherSel.tableDesc().isColumn( "REL_HUMIDITY" ) ) { |
---|
1930 | fCol = new ScalarColumn<Float>( wtab, "HUMIDITY" ) ; |
---|
1931 | sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "REL_HUMIDITY" ) ; |
---|
1932 | fCol->putColumn( *sharedFloatCol ) ; |
---|
1933 | delete sharedFloatCol ; |
---|
1934 | delete fCol ; |
---|
1935 | } |
---|
1936 | if ( mWeatherSel.tableDesc().isColumn( "WIND_SPEED" ) ) { |
---|
1937 | fCol = new ScalarColumn<Float>( wtab, "WINDSPEED" ) ; |
---|
1938 | sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "WIND_SPEED" ) ; |
---|
1939 | fCol->putColumn( *sharedFloatCol ) ; |
---|
1940 | delete sharedFloatCol ; |
---|
1941 | delete fCol ; |
---|
1942 | } |
---|
1943 | if ( mWeatherSel.tableDesc().isColumn( "WIND_DIRECTION" ) ) { |
---|
1944 | fCol = new ScalarColumn<Float>( wtab, "WINDAZ" ) ; |
---|
1945 | sharedFloatCol = new ROScalarColumn<Float>( mWeatherSel, "WIND_DIRECTION" ) ; |
---|
1946 | fCol->putColumn( *sharedFloatCol ) ; |
---|
1947 | delete sharedFloatCol ; |
---|
1948 | delete fCol ; |
---|
1949 | } |
---|
1950 | ScalarColumn<uInt> idCol( wtab, "ID" ) ; |
---|
1951 | for ( uInt irow = 0 ; irow < wnrow ; irow++ ) |
---|
1952 | idCol.put( irow, irow ) ; |
---|
1953 | |
---|
1954 | ROScalarQuantColumn<Double> tqCol( mWeatherSel, "TIME" ) ; |
---|
1955 | ROScalarColumn<Double> tCol( mWeatherSel, "TIME" ) ; |
---|
1956 | String tUnit = tqCol.getUnits() ; |
---|
1957 | Vector<Double> mwTime = tCol.getColumn() ; |
---|
1958 | if ( tUnit == "d" ) |
---|
1959 | mwTime *= 86400.0 ; |
---|
1960 | tqCol.attach( mWeatherSel, "INTERVAL" ) ; |
---|
1961 | tCol.attach( mWeatherSel, "INTERVAL" ) ; |
---|
1962 | String iUnit = tqCol.getUnits() ; |
---|
1963 | Vector<Double> mwInterval = tCol.getColumn() ; |
---|
1964 | if ( iUnit == "d" ) |
---|
1965 | mwInterval *= 86400.0 ; |
---|
1966 | |
---|
1967 | if ( stationId > 0 ) { |
---|
1968 | ROScalarColumn<Int> stationCol( mWeatherSel, "NS_WX_STATION_ID" ) ; |
---|
1969 | Vector<Int> stationVec = stationCol.getColumn() ; |
---|
1970 | uInt wsnrow = ntrue( stationVec == stationId ) ; |
---|
1971 | mwTime_.resize( wsnrow ) ; |
---|
1972 | mwInterval_.resize( wsnrow ) ; |
---|
1973 | mwIndex_.resize( wsnrow ) ; |
---|
1974 | uInt wsidx = 0 ; |
---|
1975 | for ( uInt irow = 0 ; irow < wnrow ; irow++ ) { |
---|
1976 | if ( stationId == stationVec[irow] ) { |
---|
1977 | mwTime_[wsidx] = mwTime[irow] ; |
---|
1978 | mwInterval_[wsidx] = mwInterval[irow] ; |
---|
1979 | mwIndex_[wsidx] = irow ; |
---|
1980 | wsidx++ ; |
---|
1981 | } |
---|
1982 | } |
---|
1983 | } |
---|
1984 | else { |
---|
1985 | mwTime_ = mwTime ; |
---|
1986 | mwInterval_ = mwInterval ; |
---|
1987 | mwIndex_.resize( mwTime_.size() ) ; |
---|
1988 | indgen( mwIndex_ ) ; |
---|
1989 | } |
---|
1990 | //os_ << "mwTime[0] = " << mwTime_[0] << " mwInterval[0] = " << mwInterval_[0] << LogIO::POST ; |
---|
1991 | //os_ << "mwIndex_=" << mwIndex_ << LogIO::POST; |
---|
1992 | //double endSec = mathutil::gettimeofday_sec() ; |
---|
1993 | //os_ << "end MSFiller::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; |
---|
1994 | } |
---|
1995 | |
---|
1996 | void MSFiller::fillFocus() |
---|
1997 | { |
---|
1998 | //double startSec = mathutil::gettimeofday_sec() ; |
---|
1999 | //os_ << "start MSFiller::fillFocus() startSec=" << startSec << LogIO::POST ; |
---|
2000 | // tentative |
---|
2001 | table_->focus().addEntry( 0.0, 0.0, 0.0, 0.0 ) ; |
---|
2002 | //double endSec = mathutil::gettimeofday_sec() ; |
---|
2003 | //os_ << "end MSFiller::fillFocus() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; |
---|
2004 | } |
---|
2005 | |
---|
2006 | void MSFiller::fillTcal() |
---|
2007 | { |
---|
2008 | //double startSec = mathutil::gettimeofday_sec() ; |
---|
2009 | //os_ << "start MSFiller::fillTcal() startSec=" << startSec << LogIO::POST ; |
---|
2010 | |
---|
2011 | if ( !isSysCal_ ) { |
---|
2012 | // add dummy row |
---|
2013 | os_ << "No SYSCAL rows" << LogIO::POST ; |
---|
2014 | table_->tcal().table().addRow(1,True) ; |
---|
2015 | Vector<Float> defaultTcal( 1, 1.0 ) ; |
---|
2016 | ArrayColumn<Float> tcalCol( table_->tcal().table(), "TCAL" ) ; |
---|
2017 | tcalCol.put( 0, defaultTcal ) ; |
---|
2018 | return ; |
---|
2019 | } |
---|
2020 | |
---|
2021 | if ( colTcal_ == "NONE" ) { |
---|
2022 | // add dummy row |
---|
2023 | os_ << "No TCAL column" << LogIO::POST ; |
---|
2024 | table_->tcal().table().addRow(1,True) ; |
---|
2025 | Vector<Float> defaultTcal( 1, 1.0 ) ; |
---|
2026 | ArrayColumn<Float> tcalCol( table_->tcal().table(), "TCAL" ) ; |
---|
2027 | tcalCol.put( 0, defaultTcal ) ; |
---|
2028 | return ; |
---|
2029 | } |
---|
2030 | |
---|
2031 | Table &sctab = mstable_.sysCal() ; |
---|
2032 | if ( sctab.nrow() == 0 ) { |
---|
2033 | os_ << "No SYSCAL rows" << LogIO::POST ; |
---|
2034 | return ; |
---|
2035 | } |
---|
2036 | ROScalarColumn<Int> antCol( sctab, "ANTENNA_ID" ) ; |
---|
2037 | Vector<Int> ant = antCol.getColumn() ; |
---|
2038 | if ( allNE( ant, antenna_ ) ) { |
---|
2039 | os_ << "No SYSCAL rows" << LogIO::POST ; |
---|
2040 | return ; |
---|
2041 | } |
---|
2042 | ROTableColumn tcalCol( sctab, colTcal_ ) ; |
---|
2043 | Bool notDefined = False ; |
---|
2044 | for ( uInt irow = 0 ; irow < sctab.nrow() ; irow++ ) { |
---|
2045 | if ( ant[irow] == antenna_ && !tcalCol.isDefined( irow ) ) { |
---|
2046 | notDefined = True ; |
---|
2047 | break ; |
---|
2048 | } |
---|
2049 | } |
---|
2050 | if ( notDefined ) { |
---|
2051 | os_ << "No TCAL value" << LogIO::POST ; |
---|
2052 | table_->tcal().table().addRow(1,True) ; |
---|
2053 | Vector<Float> defaultTcal( 1, 1.0 ) ; |
---|
2054 | ArrayColumn<Float> tcalCol( table_->tcal().table(), "TCAL" ) ; |
---|
2055 | tcalCol.put( 0, defaultTcal ) ; |
---|
2056 | return ; |
---|
2057 | } |
---|
2058 | |
---|
2059 | static const char *cols[] = { |
---|
2060 | "ANTENNA_ID", "FEED_ID", "SPECTRAL_WINDOW_ID", "TIME", |
---|
2061 | NULL |
---|
2062 | }; |
---|
2063 | static const TypeManagerImpl<Int> tmInt; |
---|
2064 | static const TypeManagerImpl<Double> tmDouble; |
---|
2065 | static const TypeManager *const tms[] = { |
---|
2066 | &tmInt, &tmInt, &tmInt, &tmDouble, NULL |
---|
2067 | }; |
---|
2068 | Table tab = table_->tcal().table() ; |
---|
2069 | TcalVisitor visitor( sctab, tab, tcalrec_, antenna_ ) ; |
---|
2070 | visitor.setTcalColumn( colTcal_ ) ; |
---|
2071 | |
---|
2072 | traverseTable(sctab, cols, tms, &visitor); |
---|
2073 | |
---|
2074 | infillTcal(); |
---|
2075 | |
---|
2076 | //tcalrec_.print( std::cout ) ; |
---|
2077 | //double endSec = mathutil::gettimeofday_sec() ; |
---|
2078 | //os_ << "end MSFiller::fillTcal() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ; |
---|
2079 | } |
---|
2080 | |
---|
2081 | void MSFiller::infillTcal() |
---|
2082 | { |
---|
2083 | uInt nfields = tcalrec_.nfields() ; |
---|
2084 | set<Int> spwAvailable; |
---|
2085 | for (uInt i = 0; i < nfields; i++) { |
---|
2086 | String name = tcalrec_.name(i); |
---|
2087 | size_t pos1 = name.find(':') + 4; |
---|
2088 | size_t pos2 = name.find(':',pos1); |
---|
2089 | Int spwid = String::toInt(name.substr(pos1,pos2-pos1)); |
---|
2090 | //cout << "spwid=" << spwid << endl; |
---|
2091 | spwAvailable.insert(spwid); |
---|
2092 | } |
---|
2093 | Table spwtab = mstable_.spectralWindow(); |
---|
2094 | Table tcaltab = table_->tcal().table(); |
---|
2095 | ScalarColumn<uInt> idCol(tcaltab, "ID"); |
---|
2096 | ScalarColumn<String> timeCol(tcaltab, "TIME"); |
---|
2097 | ArrayColumn<Float> tcalCol(tcaltab, "TCAL"); |
---|
2098 | ROScalarColumn<Int> numChanCol(spwtab, "NUM_CHAN"); |
---|
2099 | Int numSpw = spwtab.nrow(); |
---|
2100 | Int dummyFeed = 0; |
---|
2101 | Double dummyTime = 0.0; |
---|
2102 | Vector<uInt> idminmax(2); |
---|
2103 | for (Int i = 0; i < numSpw; i++) { |
---|
2104 | if (spwAvailable.find(i) == spwAvailable.end()) { |
---|
2105 | String key = keyTcal(dummyFeed, i, dummyTime); |
---|
2106 | Vector<Float> tcal(numChanCol(i), 1.0); |
---|
2107 | uInt nrow = tcaltab.nrow(); |
---|
2108 | tcaltab.addRow(1); |
---|
2109 | idCol.put(nrow, nrow); |
---|
2110 | timeCol.put(nrow, ""); |
---|
2111 | tcalCol.put(nrow, tcal); |
---|
2112 | idminmax = nrow; |
---|
2113 | tcalrec_.define(key, idminmax); |
---|
2114 | } |
---|
2115 | } |
---|
2116 | //tcalrec_.print(cout); |
---|
2117 | } |
---|
2118 | |
---|
2119 | string MSFiller::getFrame() |
---|
2120 | { |
---|
2121 | MFrequency::Types frame = MFrequency::DEFAULT ; |
---|
2122 | ROTableColumn numChanCol( mstable_.spectralWindow(), "NUM_CHAN" ) ; |
---|
2123 | ROTableColumn measFreqRefCol( mstable_.spectralWindow(), "MEAS_FREQ_REF" ) ; |
---|
2124 | uInt nrow = numChanCol.nrow() ; |
---|
2125 | Vector<Int> measFreqRef( nrow, MFrequency::DEFAULT ) ; |
---|
2126 | uInt nref = 0 ; |
---|
2127 | for ( uInt irow = 0 ; irow < nrow ; irow++ ) { |
---|
2128 | if ( numChanCol.asInt( irow ) != 4 ) { // exclude WVR |
---|
2129 | measFreqRef[nref] = measFreqRefCol.asInt( irow ) ; |
---|
2130 | nref++ ; |
---|
2131 | } |
---|
2132 | } |
---|
2133 | if ( nref > 0 ) |
---|
2134 | frame = (MFrequency::Types)measFreqRef[0] ; |
---|
2135 | |
---|
2136 | return MFrequency::showType( frame ) ; |
---|
2137 | } |
---|
2138 | |
---|
2139 | void MSFiller::initHeader( STHeader &header ) |
---|
2140 | { |
---|
2141 | header.nchan = 0 ; |
---|
2142 | header.npol = 0 ; |
---|
2143 | header.nif = 0 ; |
---|
2144 | header.nbeam = 0 ; |
---|
2145 | header.observer = "" ; |
---|
2146 | header.project = "" ; |
---|
2147 | header.obstype = "" ; |
---|
2148 | header.antennaname = "" ; |
---|
2149 | header.antennaposition.resize( 3 ) ; |
---|
2150 | header.equinox = 0.0 ; |
---|
2151 | header.freqref = "" ; |
---|
2152 | header.reffreq = -1.0 ; |
---|
2153 | header.bandwidth = 0.0 ; |
---|
2154 | header.utc = 0.0 ; |
---|
2155 | header.fluxunit = "" ; |
---|
2156 | header.epoch = "" ; |
---|
2157 | header.poltype = "" ; |
---|
2158 | } |
---|
2159 | |
---|
2160 | string MSFiller::frameFromSpwTable() |
---|
2161 | { |
---|
2162 | string frameString; |
---|
2163 | Table tab = mstable_.spectralWindow(); |
---|
2164 | ROScalarColumn<Int> mfrCol(tab, "MEAS_FREQ_REF"); |
---|
2165 | Vector<Int> mfr = mfrCol.getColumn(); |
---|
2166 | if (allEQ(mfr,mfr[0])) { |
---|
2167 | frameString = MFrequency::showType(mfr[0]); |
---|
2168 | //cout << "all rows have same frame: " << frameString << endl; |
---|
2169 | } |
---|
2170 | else { |
---|
2171 | mfrCol.attach(tab, "NUM_CHAN"); |
---|
2172 | for (uInt i = 0; i < tab.nrow(); i++) { |
---|
2173 | if (mfrCol(i) != 4) { |
---|
2174 | frameString = MFrequency::showType(mfr[i]); |
---|
2175 | break; |
---|
2176 | } |
---|
2177 | } |
---|
2178 | if (frameString.size() == 0) { |
---|
2179 | frameString = "TOPO"; |
---|
2180 | } |
---|
2181 | } |
---|
2182 | |
---|
2183 | //cout << "frameString = " << frameString << endl; |
---|
2184 | |
---|
2185 | return frameString; |
---|
2186 | } |
---|
2187 | |
---|
2188 | }; |
---|