[847] | 1 | // |
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| 2 | // C++ Interface: Scantable |
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| 3 | // |
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| 4 | // Description: |
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| 5 | // |
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| 6 | // |
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| 7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2006 |
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| 8 | // |
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| 9 | // Copyright: See COPYING file that comes with this distribution |
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| 10 | // |
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| 11 | // |
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| 12 | #ifndef ASAPSCANTABLEWRAPPER_H |
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| 13 | #define ASAPSCANTABLEWRAPPER_H |
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[2] | 14 | |
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| 15 | #include <vector> |
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| 16 | #include <string> |
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[380] | 17 | #include <casa/Arrays/Vector.h> |
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[2] | 18 | |
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[465] | 19 | #include "MathUtils.h" |
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[901] | 20 | #include "STFit.h" |
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[1931] | 21 | #include "STFitEntry.h" |
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[847] | 22 | #include "Scantable.h" |
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[1598] | 23 | #include "STCoordinate.h" |
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[2] | 24 | |
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[83] | 25 | namespace asap { |
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[847] | 26 | /** |
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| 27 | * This class contains and wraps a CountedPtr<Scantable>, as the CountedPtr |
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| 28 | * class does not provide the dor operator which is need for references |
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| 29 | * in boost::python |
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| 30 | * see Scantable for interfce description |
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| 31 | * |
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| 32 | * @brief The main ASAP data container wrapper |
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| 33 | * @author Malte Marquarding |
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| 34 | * @date 2006-02-23 |
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| 35 | * @version 2.0a |
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| 36 | */ |
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| 37 | class ScantableWrapper { |
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[2] | 38 | |
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| 39 | public: |
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[1385] | 40 | explicit ScantableWrapper( const std::string& name, |
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[1077] | 41 | int type=0) |
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[864] | 42 | { |
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| 43 | casa::Table::TableType tp = casa::Table::Memory; |
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[1077] | 44 | if ( type == 1 ) tp = casa::Table::Plain; |
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[864] | 45 | table_ = new Scantable(name, tp); |
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| 46 | } |
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[90] | 47 | |
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[1350] | 48 | explicit ScantableWrapper(int type=0) |
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[864] | 49 | { |
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| 50 | casa::Table::TableType tp = casa::Table::Memory; |
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[1077] | 51 | if ( type == 1) tp = casa::Table::Plain; |
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[864] | 52 | table_= new Scantable(tp); |
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| 53 | } |
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[90] | 54 | |
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[1350] | 55 | explicit ScantableWrapper(casa::CountedPtr<Scantable> cp) : table_(cp) {;} |
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[90] | 56 | |
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[847] | 57 | ScantableWrapper(const ScantableWrapper& mt) : |
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| 58 | table_(mt.getCP()) {;} |
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[90] | 59 | |
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[868] | 60 | void assign(const ScantableWrapper& mt) |
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| 61 | { table_= mt.getCP(); } |
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| 62 | |
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[847] | 63 | ScantableWrapper copy() { |
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| 64 | return ScantableWrapper(new Scantable(*(this->getCP()), false)); |
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[80] | 65 | } |
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[868] | 66 | |
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[896] | 67 | std::vector<float> getSpectrum( int whichrow=0, |
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[905] | 68 | const std::string& poltype="" ) const { |
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[896] | 69 | return table_->getSpectrum(whichrow, poltype); |
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[2] | 70 | } |
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[527] | 71 | // std::string getPolarizationLabel(bool linear, bool stokes, bool linPol, int polIdx) const { |
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| 72 | // Boost fails with 4 arguments. |
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[902] | 73 | std::string getPolarizationLabel(int index, const std::string& ptype) const { |
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| 74 | return table_->getPolarizationLabel(index, ptype); |
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[494] | 75 | } |
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[527] | 76 | |
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[896] | 77 | std::vector<double> getAbcissa(int whichrow=0) const |
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| 78 | { return table_->getAbcissa(whichrow); } |
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[41] | 79 | |
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[896] | 80 | std::string getAbcissaLabel(int whichrow=0) const |
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| 81 | { return table_->getAbcissaLabel(whichrow); } |
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[157] | 82 | |
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[896] | 83 | float getTsys(int whichrow=0) const |
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| 84 | { return table_->getTsys(whichrow); } |
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[2] | 85 | |
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[2161] | 86 | std::vector<float> getTsysSpectrum(int whichrow=0) const |
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| 87 | { return table_->getTsysSpectrum(whichrow); } |
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| 88 | |
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[1947] | 89 | //std::string getTime(int whichrow=0) const |
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| 90 | // { return table_->getTime(whichrow); } |
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| 91 | std::string getTime(int whichrow=0, int prec = 0) const |
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| 92 | { return table_->getTime(whichrow, true, casa::uInt(prec)); } |
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[207] | 93 | |
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[1350] | 94 | double getIntTime(int whichrow=0) const |
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| 95 | { return table_->getIntTime(whichrow); } |
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| 96 | |
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[1068] | 97 | std::string getDirectionString(int whichrow=0) const |
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| 98 | { return table_->getDirectionString(whichrow); } |
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| 99 | |
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[864] | 100 | std::string getFluxUnit() const { return table_->getFluxUnit(); } |
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| 101 | |
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| 102 | void setFluxUnit(const std::string& unit) { table_->setFluxUnit(unit); } |
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| 103 | |
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[238] | 104 | void setInstrument(const std::string& name) {table_->setInstrument(name);} |
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[1189] | 105 | void setFeedType(const std::string& ftype) {table_->setFeedType(ftype);} |
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[238] | 106 | |
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[896] | 107 | std::vector<bool> getMask(int whichrow=0) const |
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| 108 | { return table_->getMask(whichrow); } |
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[2] | 109 | |
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[1430] | 110 | /** |
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[1000] | 111 | void flag(const std::vector<bool>& msk=std::vector<bool>()) |
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| 112 | { table_->flag(msk); } |
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[1430] | 113 | **/ |
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[1994] | 114 | /** |
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[1430] | 115 | void flag(const std::vector<bool>& msk=std::vector<bool>(), bool unflag=false) |
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| 116 | { table_->flag(msk, unflag); } |
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[1994] | 117 | **/ |
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| 118 | void flag(int whichrow=-1, const std::vector<bool>& msk=std::vector<bool>(), bool unflag=false) |
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| 119 | { table_->flag(whichrow, msk, unflag); } |
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[2] | 120 | |
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[1819] | 121 | void flagRow(const std::vector<casa::uInt>& rows=std::vector<casa::uInt>(), bool unflag=false) |
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| 122 | { table_->flagRow(rows, unflag); } |
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| 123 | |
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| 124 | bool getFlagRow(int whichrow=0) const |
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| 125 | { return table_->getFlagRow(whichrow); } |
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| 126 | |
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| 127 | void clip(const casa::Float uthres, const casa::Float dthres, bool clipoutside=true, bool unflag=false) |
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| 128 | { table_->clip(uthres, dthres, clipoutside, unflag); } |
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| 129 | |
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| 130 | std::vector<bool> getClipMask(int whichrow, const casa::Float uthres, const casa::Float dthres, bool clipoutside, bool unflag) const |
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| 131 | { return table_->getClipMask(whichrow, uthres, dthres, clipoutside, unflag); } |
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| 132 | |
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[896] | 133 | std::string getSourceName(int whichrow=0) const |
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| 134 | { return table_->getSourceName(whichrow); } |
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[794] | 135 | |
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[896] | 136 | float getElevation(int whichrow=0) const |
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| 137 | { return table_->getElevation(whichrow); } |
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[90] | 138 | |
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[896] | 139 | float getAzimuth(int whichrow=0) const |
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| 140 | { return table_->getAzimuth(whichrow); } |
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[2] | 141 | |
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[896] | 142 | float getParAngle(int whichrow=0) const |
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| 143 | { return table_->getParAngle(whichrow); } |
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[2] | 144 | |
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[864] | 145 | |
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[884] | 146 | void setSpectrum(std::vector<float> spectrum, int whichrow=0) |
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| 147 | { table_->setSpectrum(spectrum, whichrow); } |
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[868] | 148 | |
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[1111] | 149 | std::vector<uint> getIFNos() { return table_->getIFNos(); } |
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[864] | 150 | int getIF(int whichrow) const {return table_->getIF(whichrow);} |
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[1111] | 151 | std::vector<uint> getBeamNos() { return table_->getBeamNos(); } |
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[864] | 152 | int getBeam(int whichrow) const {return table_->getBeam(whichrow);} |
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[1111] | 153 | std::vector<uint> getPolNos() { return table_->getPolNos(); } |
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[864] | 154 | int getPol(int whichrow) const {return table_->getPol(whichrow);} |
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[868] | 155 | int getCycle(int whichrow) const {return table_->getCycle(whichrow);} |
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[1111] | 156 | std::vector<uint> getScanNos() { return table_->getScanNos(); } |
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[868] | 157 | int getScan(int whichrow) const {return table_->getScan(whichrow);} |
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[1819] | 158 | std::vector<uint> getMolNos() { return table_->getMolNos();} |
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[864] | 159 | |
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| 160 | STSelector getSelection() const { return table_->getSelection(); } |
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[868] | 161 | void setSelection(const STSelector& sts) |
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| 162 | { return table_->setSelection(sts);} |
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[864] | 163 | |
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[896] | 164 | std::string getPolType() const { return table_->getPolType(); } |
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| 165 | |
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[864] | 166 | int nif(int scanno=-1) const {return table_->nif(scanno);} |
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| 167 | int nbeam(int scanno=-1) const {return table_->nbeam(scanno);} |
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| 168 | int npol(int scanno=-1) const {return table_->npol(scanno);} |
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| 169 | int nchan(int ifno=-1) const {return table_->nchan(ifno);} |
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| 170 | int nscan() const {return table_->nscan();} |
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| 171 | int nrow() const {return table_->nrow();} |
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[902] | 172 | int ncycle(int scanno) const {return table_->ncycle(scanno);} |
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[2] | 173 | |
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[864] | 174 | void makePersistent(const std::string& fname) |
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| 175 | { table_->makePersistent(fname); } |
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[90] | 176 | |
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[1068] | 177 | void setSourceType(int stype) |
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| 178 | { table_->setSourceType(stype); } |
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| 179 | |
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[1360] | 180 | void shift(int npix) |
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| 181 | { table_->shift(npix); } |
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| 182 | |
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[1819] | 183 | /** |
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| 184 | commented out by TT |
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[1170] | 185 | void setRestFrequencies(double rf, const std::string& name, |
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| 186 | const std::string& unit) |
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| 187 | { table_->setRestFrequencies(rf, name, unit); } |
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[1819] | 188 | **/ |
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| 189 | void setRestFrequencies(vector<double> rf, const vector<std::string>& name, |
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| 190 | const std::string& unit) |
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| 191 | { table_->setRestFrequencies(rf, name, unit); } |
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| 192 | |
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[925] | 193 | /* |
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[868] | 194 | void setRestFrequencies(const std::string& name) { |
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| 195 | table_->setRestFrequencies(name); |
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[847] | 196 | } |
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[925] | 197 | */ |
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[745] | 198 | |
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[1819] | 199 | /* |
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[864] | 200 | std::vector<double> getRestFrequencies() const |
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| 201 | { return table_->getRestFrequencies(); } |
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[1819] | 202 | */ |
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| 203 | std::vector<double> getRestFrequency(int id) const |
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| 204 | { return table_->getRestFrequency(id); } |
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[251] | 205 | |
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[105] | 206 | void setCoordInfo(std::vector<string> theinfo) { |
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| 207 | table_->setCoordInfo(theinfo); |
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| 208 | } |
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| 209 | std::vector<string> getCoordInfo() const { |
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| 210 | return table_->getCoordInfo(); |
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| 211 | } |
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[90] | 212 | |
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[987] | 213 | void setDirection(const std::string& refstr="") |
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| 214 | { table_->setDirectionRefString(refstr); } |
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| 215 | |
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[847] | 216 | casa::CountedPtr<Scantable> getCP() const {return table_;} |
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| 217 | Scantable* getPtr() {return &(*table_);} |
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[380] | 218 | |
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[2286] | 219 | // std::string summary() const { |
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| 220 | // return table_->summary(); |
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| 221 | // } |
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| 222 | void summary(const std::string& filename="") { |
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[2290] | 223 | //std::string summary(const std::string& filename="") const { |
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| 224 | table_->summary(filename); |
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[380] | 225 | } |
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[745] | 226 | |
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[2178] | 227 | std::string listHeader() const { |
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[2163] | 228 | return table_->headerSummary(); |
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[2111] | 229 | } |
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| 230 | |
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[2163] | 231 | std::vector<std::string> getHistory() const |
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[864] | 232 | { return table_->getHistory(); } |
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[207] | 233 | |
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[864] | 234 | void addHistory(const std::string& hist) |
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| 235 | { table_->addHistory(hist); } |
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[745] | 236 | |
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[972] | 237 | void addFit(const STFitEntry& fit, int row) |
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| 238 | { table_->addFit(fit, row); } |
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| 239 | |
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| 240 | STFitEntry getFit(int whichrow) const |
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| 241 | { return table_->getFit(whichrow); } |
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| 242 | |
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[2012] | 243 | void calculateAZEL() { table_->calculateAZEL(); } |
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[465] | 244 | |
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[1003] | 245 | std::vector<std::string> columnNames() const |
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| 246 | { return table_->columnNames(); } |
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| 247 | |
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[1391] | 248 | std::string getAntennaName() const |
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| 249 | { return table_->getAntennaName(); } |
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| 250 | |
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| 251 | int checkScanInfo(const vector<int>& scanlist) const |
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| 252 | { return table_->checkScanInfo(scanlist); } |
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[1819] | 253 | |
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[1730] | 254 | std::vector<double> getDirectionVector(int whichrow) const |
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[1391] | 255 | { return table_->getDirectionVector(whichrow); } |
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| 256 | |
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[1586] | 257 | void parallactify(bool flag) |
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| 258 | { table_->parallactify(flag); } |
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| 259 | |
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[1598] | 260 | STCoordinate getCoordinate(int row) { |
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| 261 | return STCoordinate(table_->getSpectralCoordinate(row)); |
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| 262 | } |
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| 263 | |
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[1730] | 264 | std::vector<float> getWeather(int whichrow) const |
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| 265 | { return table_->getWeather(whichrow); } |
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| 266 | |
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[1819] | 267 | void reshapeSpectrum( int nmin, int nmax ) |
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| 268 | { table_->reshapeSpectrum( nmin, nmax ); } |
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| 269 | |
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[2189] | 270 | void polyBaseline(const std::vector<bool>& mask, int order, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="") |
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| 271 | { table_->polyBaseline(mask, order, getresidual, showprogress, outlog, blfile); } |
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[1907] | 272 | |
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[2189] | 273 | void autoPolyBaseline(const std::vector<bool>& mask, int order, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="") |
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| 274 | { table_->autoPolyBaseline(mask, order, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile); } |
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[1907] | 275 | |
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[2189] | 276 | void cubicSplineBaseline(const std::vector<bool>& mask, int npiece, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="") |
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| 277 | { table_->cubicSplineBaseline(mask, npiece, clipthresh, clipniter, getresidual, showprogress, outlog, blfile); } |
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[2012] | 278 | |
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[2189] | 279 | void autoCubicSplineBaseline(const std::vector<bool>& mask, int npiece, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="") |
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| 280 | { table_->autoCubicSplineBaseline(mask, npiece, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile); } |
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[2012] | 281 | |
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[2189] | 282 | void sinusoidBaseline(const std::vector<bool>& mask, const bool applyfft, const std::string& fftmethod, const std::string& fftthresh, const std::vector<int>& addwn, const std::vector<int>& rejwn, float clipthresh, int clipniter, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="") |
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| 283 | { table_->sinusoidBaseline(mask, applyfft, fftmethod, fftthresh, addwn, rejwn, clipthresh, clipniter, getresidual, showprogress, outlog, blfile); } |
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[2047] | 284 | |
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[2189] | 285 | void autoSinusoidBaseline(const std::vector<bool>& mask, const bool applyfft, const std::string& fftmethod, const std::string& fftthresh, const std::vector<int>& addwn, const std::vector<int>& rejwn, float clipthresh, int clipniter, const std::vector<int>& edge, float threshold=5.0, int chan_avg_limit=1, bool getresidual=true, const std::string& showprogress="true,1000", const bool outlog=false, const std::string& blfile="") |
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| 286 | { table_->autoSinusoidBaseline(mask, applyfft, fftmethod, fftthresh, addwn, rejwn, clipthresh, clipniter, edge, threshold, chan_avg_limit, getresidual, showprogress, outlog, blfile); } |
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[2047] | 287 | |
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[2012] | 288 | float getRms(const std::vector<bool>& mask, int whichrow) |
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| 289 | { return table_->getRms(mask, whichrow); } |
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| 290 | |
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| 291 | std::string formatBaselineParams(const std::vector<float>& params, const std::vector<bool>& fixed, float rms, const std::string& masklist, int whichrow, bool verbose=false) |
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[2193] | 292 | { return table_->formatBaselineParams(params, fixed, rms, -1, masklist, whichrow, verbose); } |
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[2012] | 293 | |
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| 294 | std::string formatPiecewiseBaselineParams(const std::vector<int>& ranges, const std::vector<float>& params, const std::vector<bool>& fixed, float rms, const std::string& masklist, int whichrow, bool verbose=false) |
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[2193] | 295 | { return table_->formatPiecewiseBaselineParams(ranges, params, fixed, rms, -1, masklist, whichrow, verbose); } |
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[2012] | 296 | |
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[1907] | 297 | bool getFlagtraFast(int whichrow=0) const |
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[2047] | 298 | { return table_->getFlagtraFast(casa::uInt(whichrow)); } |
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[1907] | 299 | |
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[2186] | 300 | std::vector<float> execFFT(int whichrow, const std::vector<bool>& mask, bool getRealImag=false, bool getAmplitudeOnly=false) |
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| 301 | { return table_->execFFT(whichrow, mask, getRealImag, getAmplitudeOnly); } |
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[1907] | 302 | |
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[2012] | 303 | |
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[2186] | 304 | |
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[2] | 305 | private: |
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[847] | 306 | casa::CountedPtr<Scantable> table_; |
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[2] | 307 | }; |
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| 308 | |
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| 309 | } // namespace |
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| 310 | #endif |
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[1819] | 311 | |
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