source: branches/casa-prerelease/pre-asap/src/MSWriter.cpp @ 2329

Last change on this file since 2329 was 2329, checked in by Takeshi Nakazato, 13 years ago

New Development: No

JIRA Issue: No

Ready for Test: Yes

Interface Changes: No

What Interface Changed: Please list interface changes

Test Programs: List test programs

Put in Release Notes: Yes/No?

Module(s): Module Names change impacts.

Description: Describe your changes here...

Merge bug fix on trunk (r2328).


File size: 76.3 KB
Line 
1//
2// C++ Interface: MSWriter
3//
4// Description:
5//
6// This class is specific writer for MS format
7//
8// Takeshi Nakazato <takeshi.nakazato@nao.ac.jp>, (C) 2010
9//
10// Copyright: See COPYING file that comes with this distribution
11//
12//
13#include <assert.h>
14
15#include <casa/OS/File.h>
16#include <casa/OS/RegularFile.h>
17#include <casa/OS/Directory.h>
18#include <casa/OS/SymLink.h>
19#include <casa/BasicSL/String.h>
20#include <casa/Arrays/Cube.h>
21
22#include <tables/Tables/ExprNode.h>
23#include <tables/Tables/TableDesc.h>
24#include <tables/Tables/SetupNewTab.h>
25#include <tables/Tables/TableIter.h>
26#include <tables/Tables/RefRows.h>
27#include <tables/Tables/TableRow.h>
28
29#include <ms/MeasurementSets/MeasurementSet.h>
30#include <ms/MeasurementSets/MSColumns.h>
31#include <ms/MeasurementSets/MSPolIndex.h>
32#include <ms/MeasurementSets/MSDataDescIndex.h>
33#include <ms/MeasurementSets/MSSourceIndex.h>
34
35#include "MSWriter.h"
36#include "STHeader.h"
37#include "STFrequencies.h"
38#include "STMolecules.h"
39#include "STTcal.h"
40#include "MathUtils.h"
41#include "TableTraverse.h"
42
43using namespace casa ;
44using namespace std ;
45
46namespace asap {
47
48class CorrTypeHandler {
49public:
50  CorrTypeHandler()
51  {}
52  virtual ~CorrTypeHandler() {}
53  virtual Vector<Stokes::StokesTypes> corrType() = 0 ;
54  virtual void reset()
55  {
56    npol = 0 ;
57  }
58  void append( uInt polno )
59  {
60    polnos[npol] = polno ;
61    npol++ ;
62  }
63  uInt nPol() { return npol ; }
64protected:
65  Vector<Stokes::StokesTypes> polmap ;
66  uInt polnos[4] ;
67  uInt npol ;
68};
69
70class LinearHandler : public CorrTypeHandler {
71public:
72  LinearHandler()
73    : CorrTypeHandler()
74  {
75    initMap() ;
76  }
77  virtual ~LinearHandler() {}
78  virtual Vector<Stokes::StokesTypes> corrType()
79  {
80    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
81    if ( npol < 4 ) {
82      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
83        ret[ipol] = polmap[polnos[ipol]] ;
84    }
85    else if ( npol == 4 ) {
86      ret[0] = polmap[0] ;
87      ret[1] = polmap[2] ;
88      ret[2] = polmap[3] ;
89      ret[4] = polmap[1] ;
90    }
91    else {
92      throw( AipsError("npol > 4") ) ;
93    }
94    return ret ;
95  }
96protected:
97  void initMap()
98  {
99    polmap.resize( 4 ) ;
100    polmap[0] = Stokes::XX ;
101    polmap[1] = Stokes::YY ;
102    polmap[2] = Stokes::XY ;
103    polmap[3] = Stokes::YX ;
104  }
105};
106class CircularHandler : public CorrTypeHandler {
107public:
108  CircularHandler()
109    : CorrTypeHandler()
110  {
111    initMap() ;
112  }
113  virtual ~CircularHandler() {}
114  virtual Vector<Stokes::StokesTypes> corrType()
115  {
116    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
117    if ( npol < 4 ) {
118      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
119        ret[ipol] = polmap[polnos[ipol]] ;
120    }
121    else if ( npol == 4 ) {
122      ret[0] = polmap[0] ;
123      ret[1] = polmap[2] ;
124      ret[2] = polmap[3] ;
125      ret[3] = polmap[1] ;
126    }
127    else {
128      throw( AipsError("npol > 4") ) ;
129    }
130    return ret ;
131  }
132private:
133  void initMap()
134  {
135    polmap.resize( 4 ) ;
136    polmap[0] = Stokes::RR ;
137    polmap[1] = Stokes::LL ;
138    polmap[2] = Stokes::RL ;
139    polmap[3] = Stokes::LR ;
140  }
141};
142class StokesHandler : public CorrTypeHandler {
143public:
144  StokesHandler()
145    : CorrTypeHandler()
146  {
147    initMap() ;
148  }
149  virtual ~StokesHandler() {}
150  virtual Vector<Stokes::StokesTypes> corrType()
151  {
152    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
153    if ( npol <= 4 ) {
154      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
155        ret[ipol] = polmap[polnos[ipol]] ;
156    }
157    else {
158      throw( AipsError("npol > 4") ) ;
159    }
160    return ret ;
161  }
162private:
163  void initMap()
164  {
165    polmap.resize( 4 ) ;
166    polmap[0] = Stokes::I ;
167    polmap[1] = Stokes::Q ;
168    polmap[2] = Stokes::U ;
169    polmap[3] = Stokes::V ;
170  }
171};
172class LinPolHandler : public CorrTypeHandler {
173public:
174  LinPolHandler()
175    : CorrTypeHandler()
176  {
177    initMap() ;
178  }
179  virtual ~LinPolHandler() {}
180  virtual Vector<Stokes::StokesTypes> corrType()
181  {
182    Vector<Stokes::StokesTypes> ret( npol, Stokes::Undefined ) ;
183    if ( npol <= 2 ) {
184      for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
185        ret[ipol] = polmap[polnos[ipol]] ;
186    }
187    else {
188      throw( AipsError("npol > 4") ) ;
189    }
190    return ret ;
191  }
192private:
193  void initMap()
194  {
195    polmap.resize( 2 ) ;
196    polmap[0] = Stokes::Plinear ;
197    polmap[1] = Stokes::Pangle ;
198  }
199};
200
201class DataHolder {
202public:
203  DataHolder( TableRow &tableRow, String polType )
204    : row( tableRow )
205  {
206    nchan = 0 ;
207    npol = 0 ;
208    makeCorrTypeHandler( polType ) ;
209    attach() ;
210    flagRow.resize( 4 ) ;
211    reset() ;
212    sigmaTemplate.resize( 4 ) ;
213    sigmaTemplate = 1.0 ;
214  }
215  virtual ~DataHolder() {}
216  virtual void post() = 0 ;
217  virtual void reset()
218  {
219    corr->reset() ;
220    flagRow = False ;
221    npol = 0 ;
222  }
223  virtual void accumulate( uInt id, Vector<Float> &sp, Vector<Bool> &fl, Bool &flr )
224  {
225    accumulateCorrType( id ) ;
226    accumulateData( id, sp ) ;
227    accumulateFlag( id, fl ) ;
228    accumulateFlagRow( id, flr ) ;
229  }
230  uInt nPol() { return npol ; }
231  uInt nChan() { return nchan ; }
232  Vector<Int> corrTypeInt()
233  {
234    Vector<Int> v( npol ) ;
235    convertArray( v, corr->corrType() ) ;
236    return v ;
237  }
238  Vector<Stokes::StokesTypes> corrType() { return corr->corrType() ; }
239  void setNchan( uInt num )
240  {
241    nchan = num ;
242    resize() ;
243  }
244protected:
245  void postAuxiliary()
246  {
247    Vector<Float> w = sigmaTemplate( IPosition(1,0), IPosition(1,npol-1) ) ;
248    sigmaRF.define( w ) ;
249    weightRF.define( w ) ;
250    Cube<Bool> c( npol, nchan, 1, False ) ;
251    flagCategoryRF.define( c ) ;
252  }
253  inline void accumulateCorrType( uInt &id )
254  {
255    corr->append( id ) ;
256    npol = corr->nPol() ;
257  }
258  inline void accumulateFlagRow( uInt &id, Bool &flr )
259  {
260    flagRow[id] = flr ;
261  }
262  void postFlagRow()
263  {
264    *flagRowRF = anyEQ( flagRow, True ) ;
265  }
266  inline void accumulateFlag( uInt &id, Vector<Bool> &fl )
267  {
268    flag.row( id ) = fl ;
269  }
270  virtual void postFlag() = 0 ;
271  inline void accumulateData( uInt &id, Vector<Float> &sp )
272  {
273    data.row( id ) = sp ;
274  }
275  virtual void postData() = 0 ;
276  TableRow &row ;
277  uInt nchan ;
278  uInt npol ;
279  CountedPtr<CorrTypeHandler> corr;
280  RecordFieldPtr< Vector<Float> > sigmaRF ;
281  RecordFieldPtr< Vector<Float> > weightRF ;
282  RecordFieldPtr< Array<Bool> > flagRF ;
283  RecordFieldPtr<Bool> flagRowRF ;
284  RecordFieldPtr< Cube<Bool> > flagCategoryRF ;
285  Vector<Bool> flagRow ;
286  Matrix<Bool> flag ;
287  Matrix<Float> data ;
288  Vector<Float> sigmaTemplate ;
289private:
290  void makeCorrTypeHandler( String &polType )
291  {
292    if ( polType == "linear" )
293      corr = new LinearHandler() ;
294    else if ( polType == "circular" )
295      corr = new CircularHandler() ;
296    else if ( polType == "stokes" )
297      corr = new StokesHandler() ;
298    else if ( polType == "linpol" )
299      corr = new LinPolHandler() ;
300    else
301      throw( AipsError("Invalid polarization type") ) ;
302  }
303  void attach()
304  {
305    TableRecord &rec = row.record() ;
306    sigmaRF.attachToRecord( rec, "SIGMA" ) ;
307    weightRF.attachToRecord( rec, "WEIGHT" ) ;
308    flagRF.attachToRecord( rec, "FLAG" ) ;
309    flagRowRF.attachToRecord( rec, "FLAG_ROW" ) ;
310    flagCategoryRF.attachToRecord( rec, "FLAG_CATEGORY" ) ;
311  }
312  void resize()
313  {
314    flag.resize( 4, nchan ) ;
315    data.resize( 4, nchan ) ;
316  }
317};
318
319class FloatDataHolder : public DataHolder {
320public:
321  FloatDataHolder( TableRow &tableRow, String polType )
322    : DataHolder( tableRow, polType )
323  {
324    attachData() ;
325  }
326  virtual ~FloatDataHolder() {}
327  virtual void post()
328  {
329    postData() ;
330    postFlag() ;
331    postFlagRow() ;
332    postAuxiliary() ;
333  }
334protected:
335  virtual void postFlag()
336  {
337    flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
338  }
339  virtual void postData()
340  {
341    dataRF.define( data( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
342  }
343private:
344  void attachData()
345  {
346    dataRF.attachToRecord( row.record(), "FLOAT_DATA" ) ;
347  }
348  RecordFieldPtr< Matrix<Float> > dataRF;
349};
350
351class ComplexDataHolder : public DataHolder {
352public:
353  ComplexDataHolder( TableRow &tableRow, String polType )
354    : DataHolder( tableRow, polType )
355  {
356    attachData() ;
357  }
358  virtual ~ComplexDataHolder() {}
359  virtual void accumulate( uInt id, Vector<Float> &sp, Vector<Bool> &fl, Bool &flr )
360  {
361    DataHolder::accumulate( id, sp, fl, flr ) ;
362    isFilled[id] = True ;
363  }
364  virtual void post()
365  {
366    postData() ;
367    postFlag() ;
368    postFlagRow() ;
369    postAuxiliary() ;
370  }
371  virtual void reset()
372  {
373    DataHolder::reset() ;
374    for ( uInt i = 0 ; i < 4 ; i++ )
375      isFilled[i] = False ;
376  }
377protected:
378  virtual void postFlag()
379  {
380    if ( npol == 4 ) {
381      Vector<Bool> tmp = flag.row( 3 ) ;
382      flag.row( 3 ) = flag.row( 1 ) ;
383      flag.row( 2 ) = flag.row( 2 ) || tmp ;
384      flag.row( 1 ) = flag.row( 2 ) ;
385      flagRF.define( flag ) ;
386    }
387    else {
388      flagRF.define( flag( IPosition( 2, 0, 0 ), IPosition( 2, npol-1, nchan-1 ) ) ) ;
389    }
390  }
391  virtual void postData()
392  {
393    Matrix<Float> tmp( 2, nchan, 0.0 ) ;
394    Matrix<Complex> v( npol, nchan ) ;
395    if ( isFilled[0] ) {
396      tmp.row( 0 ) = data.row( 0 ) ;
397      v.row( 0 ) = RealToComplex( tmp ) ;
398    }
399    if ( isFilled[1] ) {
400      tmp.row( 0 ) = data.row( 1 ) ;
401      v.row( npol-1 ) = RealToComplex( tmp ) ;
402    }
403    if ( isFilled[2] && isFilled[3] ) {
404      tmp.row( 0 ) = data.row( 2 ) ;
405      tmp.row( 1 ) = data.row( 3 ) ;
406      v.row( 1 ) = RealToComplex( tmp ) ;
407      v.row( 2 ) = conj( v.row( 1 ) ) ;
408    }
409    dataRF.define( v ) ;
410  }
411private:
412  void attachData()
413  {
414    dataRF.attachToRecord( row.record(), "DATA" ) ;
415  }
416  RecordFieldPtr< Matrix<Complex> > dataRF;
417  Bool isFilled[4] ;
418};
419
420class BaseMSWriterVisitor: public TableVisitor {
421  const String *lastFieldName;
422  uInt lastRecordNo;
423  uInt lastBeamNo, lastScanNo, lastIfNo, lastPolNo;
424  Int lastSrcType;
425  uInt lastCycleNo;
426  Double lastTime;
427protected:
428  const Table &table;
429  uInt count;
430public:
431  BaseMSWriterVisitor(const Table &table)
432    : table(table)
433  {
434    static const String dummy;
435    lastFieldName = &dummy;
436    count = 0;
437  }
438 
439  virtual void enterFieldName(const uInt recordNo, const String &columnValue) {
440  }
441  virtual void leaveFieldName(const uInt recordNo, const String &columnValue) {
442  }
443  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) { }
444  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) { }
445  virtual void enterScanNo(const uInt recordNo, uInt columnValue) { }
446  virtual void leaveScanNo(const uInt recordNo, uInt columnValue) { }
447  virtual void enterIfNo(const uInt recordNo, uInt columnValue) { }
448  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) { }
449  virtual void enterSrcType(const uInt recordNo, Int columnValue) { }
450  virtual void leaveSrcType(const uInt recordNo, Int columnValue) { }
451  virtual void enterCycleNo(const uInt recordNo, uInt columnValue) { }
452  virtual void leaveCycleNo(const uInt recordNo, uInt columnValue) { }
453  virtual void enterTime(const uInt recordNo, Double columnValue) { }
454  virtual void leaveTime(const uInt recordNo, Double columnValue) { }
455  virtual void enterPolNo(const uInt recordNo, uInt columnValue) { }
456  virtual void leavePolNo(const uInt recordNo, uInt columnValue) { }
457
458  virtual Bool visitRecord(const uInt recordNo,
459                           const String &fieldName,
460                           const uInt beamNo,
461                           const uInt scanNo,
462                           const uInt ifNo,
463                           const Int srcType,
464                           const uInt cycleNo,
465                           const Double time,
466                           const uInt polNo) { return True ;}
467
468  virtual Bool visit(Bool isFirst, const uInt recordNo,
469                     const uInt nCols, void const *const colValues[]) {
470    const String *fieldName = NULL;
471    uInt beamNo, scanNo, ifNo;
472    Int srcType;
473    uInt cycleNo;
474    Double time;
475    uInt polNo;
476    { // prologue
477      uInt i = 0;
478      {
479        const String *col = (const String*)colValues[i++];
480        fieldName = &col[recordNo];
481      }
482      {
483        const uInt *col = (const uInt *)colValues[i++];
484        beamNo = col[recordNo];
485      }
486      {
487        const uInt *col = (const uInt *)colValues[i++];
488        scanNo = col[recordNo];
489      }
490      {
491        const uInt *col = (const uInt *)colValues[i++];
492        ifNo = col[recordNo];
493      }
494      {
495        const Int *col = (const Int *)colValues[i++];
496        srcType = col[recordNo];
497      }
498      {
499        const uInt *col = (const uInt *)colValues[i++];
500        cycleNo = col[recordNo];
501      }
502      {
503        const Double *col = (const Double *)colValues[i++];
504        time = col[recordNo];
505      }
506      {
507        const Int *col = (const Int *)colValues[i++];
508        polNo = col[recordNo];
509      }
510      assert(nCols == i);
511    }
512
513    if (isFirst) {
514      enterFieldName(recordNo, *fieldName);
515      enterBeamNo(recordNo, beamNo);
516      enterScanNo(recordNo, scanNo);
517      enterIfNo(recordNo, ifNo);
518      enterSrcType(recordNo, srcType);
519      enterCycleNo(recordNo, cycleNo);
520      enterTime(recordNo, time);
521      enterPolNo(recordNo, polNo);
522    } else {
523      if (lastFieldName->compare(*fieldName) != 0) {
524        leavePolNo(lastRecordNo, lastPolNo);
525        leaveTime(lastRecordNo, lastTime);
526        leaveCycleNo(lastRecordNo, lastCycleNo);
527        leaveSrcType(lastRecordNo, lastSrcType);
528        leaveIfNo(lastRecordNo, lastIfNo);
529        leaveScanNo(lastRecordNo, lastScanNo);
530        leaveBeamNo(lastRecordNo, lastBeamNo);
531        leaveFieldName(lastRecordNo, *lastFieldName);
532
533        enterFieldName(recordNo, *fieldName);
534        enterBeamNo(recordNo, beamNo);
535        enterScanNo(recordNo, scanNo);
536        enterIfNo(recordNo, ifNo);
537        enterSrcType(recordNo, srcType);
538        enterCycleNo(recordNo, cycleNo);
539        enterTime(recordNo, time);
540        enterPolNo(recordNo, polNo);
541      } else if (lastBeamNo != beamNo) {
542        leavePolNo(lastRecordNo, lastPolNo);
543        leaveTime(lastRecordNo, lastTime);
544        leaveCycleNo(lastRecordNo, lastCycleNo);
545        leaveSrcType(lastRecordNo, lastSrcType);
546        leaveIfNo(lastRecordNo, lastIfNo);
547        leaveScanNo(lastRecordNo, lastScanNo);
548        leaveBeamNo(lastRecordNo, lastBeamNo);
549
550        enterBeamNo(recordNo, beamNo);
551        enterScanNo(recordNo, scanNo);
552        enterIfNo(recordNo, ifNo);
553        enterSrcType(recordNo, srcType);
554        enterCycleNo(recordNo, cycleNo);
555        enterTime(recordNo, time);
556        enterPolNo(recordNo, polNo);
557      } else if (lastScanNo != scanNo) {
558        leavePolNo(lastRecordNo, lastPolNo);
559        leaveTime(lastRecordNo, lastTime);
560        leaveCycleNo(lastRecordNo, lastCycleNo);
561        leaveSrcType(lastRecordNo, lastSrcType);
562        leaveIfNo(lastRecordNo, lastIfNo);
563        leaveScanNo(lastRecordNo, lastScanNo);
564
565        enterScanNo(recordNo, scanNo);
566        enterIfNo(recordNo, ifNo);
567        enterSrcType(recordNo, srcType);
568        enterCycleNo(recordNo, cycleNo);
569        enterTime(recordNo, time);
570        enterPolNo(recordNo, polNo);
571      } else if (lastIfNo != ifNo) {
572        leavePolNo(lastRecordNo, lastPolNo);
573        leaveTime(lastRecordNo, lastTime);
574        leaveCycleNo(lastRecordNo, lastCycleNo);
575        leaveSrcType(lastRecordNo, lastSrcType);
576        leaveIfNo(lastRecordNo, lastIfNo);
577
578        enterIfNo(recordNo, ifNo);
579        enterSrcType(recordNo, srcType);
580        enterCycleNo(recordNo, cycleNo);
581        enterTime(recordNo, time);
582        enterPolNo(recordNo, polNo);
583      } else if (lastSrcType != srcType) {
584        leavePolNo(lastRecordNo, lastPolNo);
585        leaveTime(lastRecordNo, lastTime);
586        leaveCycleNo(lastRecordNo, lastCycleNo);
587        leaveSrcType(lastRecordNo, lastSrcType);
588
589        enterSrcType(recordNo, srcType);
590        enterCycleNo(recordNo, cycleNo);
591        enterTime(recordNo, time);
592        enterPolNo(recordNo, polNo);
593      } else if (lastCycleNo != cycleNo) {
594        leavePolNo(lastRecordNo, lastPolNo);
595        leaveTime(lastRecordNo, lastTime);
596        leaveCycleNo(lastRecordNo, lastCycleNo);
597
598        enterCycleNo(recordNo, cycleNo);
599        enterTime(recordNo, time);
600        enterPolNo(recordNo, polNo);
601      } else if (lastTime != time) {
602        leavePolNo(lastRecordNo, lastPolNo);
603        leaveTime(lastRecordNo, lastTime);
604
605        enterTime(recordNo, time);
606        enterPolNo(recordNo, polNo);
607      } else if (lastPolNo != polNo) {
608        leavePolNo(lastRecordNo, lastPolNo);
609        enterPolNo(recordNo, polNo);
610      }
611    }
612    count++;
613    Bool result = visitRecord(recordNo, *fieldName, beamNo, scanNo, ifNo, srcType,
614                              cycleNo, time, polNo);
615
616    { // epilogue
617      lastRecordNo = recordNo;
618
619      lastFieldName = fieldName;
620      lastBeamNo = beamNo;
621      lastScanNo = scanNo;
622      lastIfNo = ifNo;
623      lastSrcType = srcType;
624      lastCycleNo = cycleNo;
625      lastTime = time;
626      lastPolNo = polNo;
627    }
628    return result ;
629  }
630
631  virtual void finish() {
632    if (count > 0) {
633      leavePolNo(lastRecordNo, lastPolNo);
634      leaveTime(lastRecordNo, lastTime);
635      leaveCycleNo(lastRecordNo, lastCycleNo);
636      leaveSrcType(lastRecordNo, lastSrcType);
637      leaveIfNo(lastRecordNo, lastIfNo);
638      leaveScanNo(lastRecordNo, lastScanNo);
639      leaveBeamNo(lastRecordNo, lastBeamNo);
640      leaveFieldName(lastRecordNo, *lastFieldName);
641    }
642  }
643};
644
645class MSWriterVisitor: public BaseMSWriterVisitor, public MSWriterUtils {
646public:
647  MSWriterVisitor(const Table &table, Table &mstable)
648    : BaseMSWriterVisitor(table),
649      ms(mstable)
650  {
651    rowidx = 0 ;
652    fieldName = "" ;
653    defaultFieldId = 0 ;
654    spwId = -1 ;
655    subscan = 1 ;
656    ptName = "" ;
657    srcId = 0 ;
658   
659    row = TableRow( ms ) ;
660
661    initPolarization() ;
662    initFrequencies() ;
663
664    //
665    // add rows to MS
666    //
667    uInt addrow = table.nrow() ;
668    ms.addRow( addrow ) ;
669
670    // attach to Scantable columns
671    spectraCol.attach( table, "SPECTRA" ) ;
672    flagtraCol.attach( table, "FLAGTRA" ) ;
673    flagRowCol.attach( table, "FLAGROW" ) ;
674    tcalIdCol.attach( table, "TCAL_ID" ) ;
675    intervalCol.attach( table, "INTERVAL" ) ;
676    directionCol.attach( table, "DIRECTION" ) ;
677    scanRateCol.attach( table, "SCANRATE" ) ;
678    timeCol.attach( table, "TIME" ) ;
679    freqIdCol.attach( table, "FREQ_ID" ) ;
680    sourceNameCol.attach( table, "SRCNAME" ) ;
681    sourceDirectionCol.attach( table, "SRCDIRECTION" ) ;
682    fieldNameCol.attach( table, "FIELDNAME" ) ;
683
684    // MS subtables
685    attachSubtables() ;
686
687    // attach to MS columns
688    attachMain() ;
689    attachPointing() ;
690  }
691 
692  virtual void enterFieldName(const uInt recordNo, const String &columnValue) {
693    //printf("%u: FieldName: %s\n", recordNo, columnValue.c_str());
694    fieldName = fieldNameCol.asString( recordNo ) ;
695    String::size_type pos = fieldName.find( "__" ) ;
696    if ( pos != String::npos ) {
697      fieldId = String::toInt( fieldName.substr( pos+2 ) ) ;
698      fieldName = fieldName.substr( 0, pos ) ;
699    }
700    else {
701      fieldId = defaultFieldId ;
702      defaultFieldId++ ;
703    }
704    Double tSec = timeCol.asdouble( recordNo ) * 86400.0 ;
705    Vector<Double> srcDir = sourceDirectionCol( recordNo ) ;
706    Vector<Double> srate = scanRateCol( recordNo ) ;
707    String srcName = sourceNameCol.asString( recordNo ) ;
708
709    addField( fieldId, fieldName, srcName, srcDir, srate, tSec ) ;
710
711    // put value
712    *fieldIdRF = fieldId ;
713  }
714  virtual void leaveFieldName(const uInt recordNo, const String &columnValue) {
715  }
716  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) {
717    //printf("%u: BeamNo: %u\n", recordNo, columnValue);
718   
719    feedId = (Int)columnValue ;
720
721    // put value
722    *feed1RF = feedId ;
723    *feed2RF = feedId ;
724  }
725  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) {
726  }
727  virtual void enterScanNo(const uInt recordNo, uInt columnValue) {
728    //printf("%u: ScanNo: %u\n", recordNo, columnValue);
729
730    // put value
731    // SCAN_NUMBER is 0-based in Scantable while 1-based in MS
732    *scanNumberRF = (Int)columnValue + 1 ;
733  }
734  virtual void leaveScanNo(const uInt recordNo, uInt columnValue) {
735    subscan = 1 ;
736  }
737  virtual void enterIfNo(const uInt recordNo, uInt columnValue) {
738    //printf("%u: IfNo: %u\n", recordNo, columnValue);
739
740    spwId = (Int)columnValue ;
741    uInt freqId = freqIdCol.asuInt( recordNo ) ;
742
743    Vector<Float> sp = spectraCol( recordNo ) ;
744    uInt nchan = sp.nelements() ;
745    holder->setNchan( nchan ) ;
746
747    addSpectralWindow( spwId, freqId ) ;
748
749    addFeed( feedId, spwId ) ;
750  }
751  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) {
752  }
753  virtual void enterSrcType(const uInt recordNo, Int columnValue) {
754    //printf("%u: SrcType: %d\n", recordNo, columnValue);
755
756    Int stateId = addState( columnValue ) ;
757
758    // put value
759    *stateIdRF = stateId ;
760  }
761  virtual void leaveSrcType(const uInt recordNo, Int columnValue) {
762  }
763  virtual void enterCycleNo(const uInt recordNo, uInt columnValue) {
764    //printf("%u: CycleNo: %u\n", recordNo, columnValue);
765  }
766  virtual void leaveCycleNo(const uInt recordNo, uInt columnValue) {
767  }
768  virtual void enterTime(const uInt recordNo, Double columnValue) {
769    //printf("%u: Time: %f\n", recordNo, columnValue);
770
771    Double timeSec = columnValue * 86400.0 ;
772    Double interval = intervalCol.asdouble( recordNo ) ;
773
774    if ( ptName.empty() ) {
775      Vector<Double> dir = directionCol( recordNo ) ;
776      Vector<Double> rate = scanRateCol( recordNo ) ;
777      if ( anyNE( rate, 0.0 ) ) {
778        Matrix<Double> msdir( 2, 2 ) ;
779        msdir.column( 0 ) = dir ;
780        msdir.column( 1 ) = rate ;
781        addPointing( timeSec, interval, msdir ) ;
782      }
783      else {
784        Matrix<Double> msdir( 2, 1 ) ;
785        msdir.column( 0 ) = dir ;
786        addPointing( timeSec, interval, msdir ) ;
787      }
788    }
789
790    // put value
791    *timeRF = timeSec ;
792    *timeCentroidRF = timeSec ;
793    *intervalRF = interval ;
794    *exposureRF = interval ;
795  }
796  virtual void leaveTime(const uInt recordNo, Double columnValue) {
797    if ( holder->nPol() > 0 ) {
798      Int polId = addPolarization() ;
799      Int ddId = addDataDescription( polId, spwId ) ;
800       
801      // put field
802      *dataDescIdRF = ddId ;
803      holder->post() ;
804     
805      // commit row
806      row.put( rowidx ) ;
807      rowidx++ ;
808
809      // reset holder
810      holder->reset() ;
811    }
812  }
813  virtual void enterPolNo(const uInt recordNo, uInt columnValue) {
814    //printf("%u: PolNo: %d\n", recordNo, columnValue);
815  }
816  virtual void leavePolNo(const uInt recordNo, uInt columnValue) {
817  }
818
819  virtual Bool visitRecord(const uInt recordNo,
820                           const String &fieldName,
821                           const uInt beamNo,
822                           const uInt scanNo,
823                           const uInt ifNo,
824                           const Int srcType,
825                           const uInt cycleNo,
826                           const Double time,
827                           const uInt polNo) {
828    //printf("%u: %s, %u, %u, %u, %d, %u, %f, %d\n", recordNo,
829    //       fieldName.c_str(), beamNo, scanNo, ifNo, srcType, cycleNo, time, polNo);
830
831    Vector<Float> sp = spectraCol( recordNo ) ;
832    Vector<uChar> tmp = flagtraCol( recordNo ) ;
833    Vector<Bool> fl( tmp.shape() ) ;
834    convertArray( fl, tmp ) ;
835    Bool flr = (Bool)flagRowCol.asuInt( recordNo ) ;
836    holder->accumulate( polNo, sp, fl, flr ) ;
837
838    return True ;
839  }
840
841  virtual void finish() {
842    BaseMSWriterVisitor::finish();
843    //printf("Total: %u\n", count);
844
845    // remove rows
846    if ( ms.nrow() > rowidx ) {
847      uInt numRemove = ms.nrow() - rowidx ;
848      //cout << "numRemove = " << numRemove << endl ;
849      Vector<uInt> rows( numRemove ) ;
850      indgen( rows, rowidx ) ;
851      ms.removeRow( rows ) ;
852    }
853
854    // fill empty SPECTRAL_WINDOW rows
855    infillSpectralWindow() ;
856  }
857
858  void dataColumnName( String name )
859  {
860    if ( name == "DATA" )
861      holder = new ComplexDataHolder( row, poltype ) ;
862    else if ( name == "FLOAT_DATA" )
863      holder = new FloatDataHolder( row, poltype ) ;
864  }
865  void pointingTableName( String name ) {
866    ptName = name ;
867  }
868  void setSourceRecord( Record &r ) {
869    srcRec = r ;
870  }
871private:
872  void addField( Int &fid, String &fname, String &srcName,
873                 Vector<Double> &sdir, Vector<Double> &srate,
874                 Double &tSec )
875  {
876    uInt nrow = fieldtab.nrow() ;
877    while( (Int)nrow <= fid ) {
878      fieldtab.addRow( 1, True ) ;
879      nrow++ ;
880    }
881
882    Matrix<Double> dir ;
883    Int numPoly = 0 ;
884    if ( anyNE( srate, 0.0 ) ) {
885      dir.resize( 2, 2 ) ;
886      dir.column( 0 ) = sdir ;
887      dir.column( 1 ) = srate ;
888      numPoly = 1 ;
889    }
890    else {
891      dir.resize( 2, 1 ) ;
892      dir.column( 0 ) = sdir ;
893    }
894    srcId = srcRec.asInt( srcName ) ;
895
896    TableRow tr( fieldtab ) ;
897    TableRecord &r = tr.record() ;
898    putField( "NAME", r, fname ) ;
899    putField( "NUM_POLY", r, numPoly ) ;
900    putField( "TIME", r, tSec ) ;
901    putField( "SOURCE_ID", r, srcId ) ;
902    defineField( "DELAY_DIR", r, dir ) ;
903    defineField( "REFERENCE_DIR", r, dir ) ;
904    defineField( "PHASE_DIR", r, dir ) ;
905    tr.put( fid ) ;
906
907    // for POINTING table
908    *poNameRF = fname ;
909  }
910  Int addState( Int &id )
911  {
912    String obsMode ;
913    Bool isSignal ;
914    Double tnoise ;
915    Double tload ;
916    queryType( id, obsMode, isSignal, tnoise, tload ) ;
917
918    String key = obsMode+"_"+String::toString( subscan ) ;
919    Int idx = -1 ;
920    uInt nEntry = stateEntry.nelements() ;
921    for ( uInt i = 0 ; i < nEntry ; i++ ) {
922      if ( stateEntry[i] == key ) {
923        idx = i ;
924        break ;
925      }
926    }
927    if ( idx == -1 ) {
928      uInt nrow = statetab.nrow() ;
929      statetab.addRow( 1, True ) ;
930      TableRow tr( statetab ) ;
931      TableRecord &r = tr.record() ;
932      putField( "OBS_MODE", r, obsMode ) ;
933      putField( "SIG", r, isSignal ) ;
934      isSignal = !isSignal ;
935      putField( "REF", r, isSignal ) ;
936      putField( "CAL", r, tnoise ) ;
937      putField( "LOAD", r, tload ) ;
938      tr.put( nrow ) ;
939      idx = nrow ;
940
941      stateEntry.resize( nEntry+1, True ) ;
942      stateEntry[nEntry] = key ;
943    }
944    subscan++ ;
945
946    return idx ;
947  }
948  void addPointing( Double &tSec, Double &interval, Matrix<Double> &dir )
949  {
950    uInt nrow = potab.nrow() ;
951    potab.addRow( 1, True ) ;
952
953    *poNumPolyRF = dir.ncolumn() - 1 ;
954    *poTimeRF = tSec ;
955    *poTimeOriginRF = tSec ;
956    *poIntervalRF = interval ;
957    poDirectionRF.define( dir ) ;
958    poTargetRF.define( dir ) ;
959    porow.put( nrow ) ;
960  }
961  Int addPolarization()
962  {
963    Int idx = -1 ;
964    Vector<Int> corrType = holder->corrTypeInt() ;
965    uInt nEntry = polEntry.size() ;
966    for ( uInt i = 0 ; i < nEntry ; i++ ) {
967      if ( polEntry[i].conform( corrType ) && allEQ( polEntry[i], corrType ) ) {
968        idx = i ;
969        break ;
970      }
971    }
972   
973    Int numCorr = holder->nPol() ;
974    Matrix<Int> corrProduct = corrProductTemplate[numCorr] ;
975
976    if ( idx == -1 ) {
977      uInt nrow = poltab.nrow() ;
978      poltab.addRow( 1, True ) ;
979      TableRow tr( poltab ) ;
980      TableRecord &r = tr.record() ;
981      putField( "NUM_CORR", r, numCorr ) ;
982      defineField( "CORR_TYPE", r, corrType ) ;
983      defineField( "CORR_PRODUCT", r, corrProduct ) ;
984      tr.put( nrow ) ;
985      idx = nrow ;
986
987      polEntry.resize( nEntry+1 ) ;
988      polEntry[nEntry] = corrType ;
989    }
990
991    return idx ;
992  }
993  Int addDataDescription( Int pid, Int sid )
994  {
995    Int idx = -1 ;
996    uInt nEntry = ddEntry.nrow() ;
997    Vector<Int> key( 2 ) ;
998    key[0] = pid ;
999    key[1] = sid ;
1000    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1001      if ( allEQ( ddEntry.row(i), key ) ) {
1002        idx = i ;
1003        break ;
1004      }
1005    }
1006
1007    if ( idx == -1 ) {
1008      uInt nrow = ddtab.nrow() ;
1009      ddtab.addRow( 1, True ) ;
1010      TableRow tr( ddtab ) ;
1011      TableRecord &r = tr.record() ;
1012      putField( "POLARIZATION_ID", r, pid ) ;
1013      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1014      tr.put( nrow ) ;
1015      idx = nrow ;
1016
1017      ddEntry.resize( nEntry+1, 2, True ) ;
1018      ddEntry.row(nEntry) = key ;
1019    }
1020
1021    return idx ;
1022  }
1023  void infillSpectralWindow()
1024  {
1025    ROScalarColumn<Int> nchanCol( spwtab, "NUM_CHAN" ) ;
1026    Vector<Int> nchan = nchanCol.getColumn() ;
1027    TableRow tr( spwtab ) ;
1028    TableRecord &r = tr.record() ;
1029    Int mfr = 1 ;
1030    Vector<Double> dummy( 1, 0.0 ) ;
1031    putField( "MEAS_FREQ_REF", r, mfr ) ;
1032    defineField( "CHAN_FREQ", r, dummy ) ;
1033    defineField( "CHAN_WIDTH", r, dummy ) ;
1034    defineField( "EFFECTIVE_BW", r, dummy ) ;
1035    defineField( "RESOLUTION", r, dummy ) ;
1036
1037    for ( uInt i = 0 ; i < spwtab.nrow() ; i++ ) {
1038      if ( nchan[i] == 0 )
1039        tr.put( i ) ;
1040    }
1041  }
1042  void addSpectralWindow( Int sid, uInt fid )
1043  {
1044    if ( !processedFreqId[fid] ) {
1045      uInt nrow = spwtab.nrow() ;
1046      while( (Int)nrow <= sid ) {
1047        spwtab.addRow( 1, True ) ;
1048        nrow++ ;
1049      }
1050      processedFreqId[fid] = True ;
1051    }
1052
1053    Double rp = refpix[fid] ;
1054    Double rv = refval[fid] ;
1055    Double ic = increment[fid] ;
1056
1057    Int mfrInt = (Int)freqframe ;
1058    Int nchan = holder->nChan() ;
1059    Double bw = nchan * abs( ic ) ;
1060    Double reffreq = rv - rp * ic ;
1061    Int netsb = 0 ; // USB->0, LSB->1
1062    if ( ic < 0 )
1063      netsb = 1 ;
1064    Vector<Double> res( nchan, abs(ic) ) ;
1065    Vector<Double> chanf( nchan ) ;
1066    indgen( chanf, reffreq, ic ) ;
1067
1068    TableRow tr( spwtab ) ;
1069    TableRecord &r = tr.record() ;
1070    putField( "MEAS_FREQ_REF", r, mfrInt ) ;
1071    putField( "NUM_CHAN", r, nchan ) ;
1072    putField( "TOTAL_BANDWIDTH", r, bw ) ;
1073    putField( "REF_FREQUENCY", r, reffreq ) ;
1074    putField( "NET_SIDEBAND", r, netsb ) ;
1075    defineField( "RESOLUTION", r, res ) ;
1076    defineField( "CHAN_WIDTH", r, res ) ;
1077    defineField( "EFFECTIVE_BW", r, res ) ;
1078    defineField( "CHAN_FREQ", r, chanf ) ;
1079    tr.put( sid ) ;
1080  }
1081  void addFeed( Int fid, Int sid )
1082  {
1083    Int idx = -1 ;
1084    uInt nEntry = feedEntry.nrow() ;
1085    Vector<Int> key( 2 ) ;
1086    key[0] = fid ;
1087    key[1] = sid ;
1088    for ( uInt i = 0 ; i < nEntry ; i++ ) {
1089      if ( allEQ( feedEntry.row(i), key ) ) {
1090        idx = i ;
1091        break ;
1092      }
1093    }
1094
1095    if ( idx == -1 ) {
1096      uInt nrow = feedtab.nrow() ;
1097      feedtab.addRow( 1, True ) ;
1098      Int numReceptors = 2 ;
1099      Vector<String> polType( numReceptors ) ;
1100      Matrix<Double> beamOffset( 2, numReceptors, 0.0 ) ;
1101      Vector<Double> receptorAngle( numReceptors, 0.0 ) ;
1102      if ( poltype == "linear" ) {
1103        polType[0] = "X" ;
1104        polType[1] = "Y" ;
1105      }
1106      else if ( poltype == "circular" ) {
1107        polType[0] = "R" ;
1108        polType[1] = "L" ;
1109      }
1110      else {
1111        polType[0] = "X" ;
1112        polType[1] = "Y" ;
1113      }
1114      Matrix<Complex> polResponse( numReceptors, numReceptors, 0.0 ) ;
1115     
1116      TableRow tr( feedtab ) ;
1117      TableRecord &r = tr.record() ;
1118      putField( "FEED_ID", r, fid ) ;
1119      putField( "BEAM_ID", r, fid ) ;
1120      Int tmp = 0 ;
1121      putField( "ANTENNA_ID", r, tmp ) ;
1122      putField( "SPECTRAL_WINDOW_ID", r, sid ) ;
1123      putField( "NUM_RECEPTORS", r, numReceptors ) ;
1124      defineField( "POLARIZATION_TYPE", r, polType ) ;
1125      defineField( "BEAM_OFFSET", r, beamOffset ) ;
1126      defineField( "RECEPTOR_ANGLE", r, receptorAngle ) ;
1127      defineField( "POL_RESPONSE", r, polResponse ) ;
1128      tr.put( nrow ) ;
1129
1130      feedEntry.resize( nEntry+1, 2, True ) ;
1131      feedEntry.row( nEntry ) = key ;
1132    }
1133  }
1134  void initPolarization()
1135  {
1136    const TableRecord &keys = table.keywordSet() ;
1137    poltype = keys.asString( "POLTYPE" ) ;
1138
1139    initCorrProductTemplate() ;
1140  }
1141  void initFrequencies()
1142  {
1143    const TableRecord &keys = table.keywordSet() ;
1144    Table tab = keys.asTable( "FREQUENCIES" ) ;
1145    ROScalarColumn<uInt> idcol( tab, "ID" ) ;
1146    ROScalarColumn<Double> rpcol( tab, "REFPIX" ) ;
1147    ROScalarColumn<Double> rvcol( tab, "REFVAL" ) ;
1148    ROScalarColumn<Double> iccol( tab, "INCREMENT" ) ;
1149    Vector<uInt> id = idcol.getColumn() ;
1150    Vector<Double> rp = rpcol.getColumn() ;
1151    Vector<Double> rv = rvcol.getColumn() ;
1152    Vector<Double> ic = iccol.getColumn() ;
1153    for ( uInt i = 0 ; i < id.nelements() ; i++ ) {
1154      processedFreqId.insert( pair<uInt,Bool>( id[i], False ) ) ;
1155      refpix.insert( pair<uInt,Double>( id[i], rp[i] ) ) ;
1156      refval.insert( pair<uInt,Double>( id[i], rv[i] ) ) ;
1157      increment.insert( pair<uInt,Double>( id[i], ic[i] ) ) ;
1158    }
1159    String frameStr = tab.keywordSet().asString( "BASEFRAME" ) ;
1160    MFrequency::getType( freqframe, frameStr ) ;
1161  }
1162  void attachSubtables()
1163  {
1164    const TableRecord &keys = table.keywordSet() ;
1165    TableRecord &mskeys = ms.rwKeywordSet() ;
1166
1167    // FIELD table
1168    fieldtab = mskeys.asTable( "FIELD" ) ;
1169
1170    // SPECTRAL_WINDOW table
1171    spwtab = mskeys.asTable( "SPECTRAL_WINDOW" ) ;
1172
1173    // POINTING table
1174    potab = mskeys.asTable( "POINTING" ) ;
1175
1176    // POLARIZATION table
1177    poltab = mskeys.asTable( "POLARIZATION" ) ;
1178
1179    // DATA_DESCRIPTION table
1180    ddtab = mskeys.asTable( "DATA_DESCRIPTION" ) ;
1181
1182    // STATE table
1183    statetab = mskeys.asTable( "STATE" ) ;
1184
1185    // FEED table
1186    feedtab = mskeys.asTable( "FEED" ) ;
1187  }
1188  void attachMain()
1189  {
1190    TableRecord &r = row.record() ;
1191    dataDescIdRF.attachToRecord( r, "DATA_DESC_ID" ) ;
1192    timeRF.attachToRecord( r, "TIME" ) ;
1193    timeCentroidRF.attachToRecord( r, "TIME_CENTROID" ) ;
1194    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1195    exposureRF.attachToRecord( r, "EXPOSURE" ) ;
1196    fieldIdRF.attachToRecord( r, "FIELD_ID" ) ;
1197    feed1RF.attachToRecord( r, "FEED1" ) ;
1198    feed2RF.attachToRecord( r, "FEED2" ) ;
1199    scanNumberRF.attachToRecord( r, "SCAN_NUMBER" ) ;
1200    stateIdRF.attachToRecord( r, "STATE_ID" ) ;
1201
1202    // constant values
1203    Int id = 0 ;
1204    RecordFieldPtr<Int> intRF( r, "OBSERVATION_ID" ) ;
1205    *intRF = 0 ;
1206    intRF.attachToRecord( r, "ANTENNA1" ) ;
1207    *intRF = 0 ;
1208    intRF.attachToRecord( r, "ANTENNA2" ) ;
1209    *intRF = 0 ;
1210    intRF.attachToRecord( r, "ARRAY_ID" ) ;
1211    *intRF = 0 ;
1212    intRF.attachToRecord( r, "PROCESSOR_ID" ) ;
1213    *intRF = 0 ;
1214    RecordFieldPtr< Vector<Double> > arrayRF( r, "UVW" ) ;
1215    arrayRF.define( Vector<Double>( 3, 0.0 ) ) ;
1216  }
1217  void attachPointing()
1218  {
1219    porow = TableRow( potab ) ;
1220    TableRecord &r = porow.record() ;
1221    poNumPolyRF.attachToRecord( r, "NUM_POLY" ) ;
1222    poTimeRF.attachToRecord( r, "TIME" ) ;
1223    poTimeOriginRF.attachToRecord( r, "TIME_ORIGIN" ) ;
1224    poIntervalRF.attachToRecord( r, "INTERVAL" ) ;
1225    poNameRF.attachToRecord( r, "NAME" ) ;
1226    poDirectionRF.attachToRecord( r, "DIRECTION" ) ;
1227    poTargetRF.attachToRecord( r, "TARGET" ) ;
1228   
1229    // constant values
1230    RecordFieldPtr<Int> antIdRF( r, "ANTENNA_ID" ) ;
1231    *antIdRF = 0 ;
1232    RecordFieldPtr<Bool> trackingRF( r, "TRACKING" ) ;
1233    *trackingRF = True ;
1234  }
1235  void queryType( Int type, String &stype, Bool &b, Double &t, Double &l )
1236  {
1237    t = 0.0 ;
1238    l = 0.0 ;
1239
1240    String sep1="#" ;
1241    String sep2="," ;
1242    String target="OBSERVE_TARGET" ;
1243    String atmcal="CALIBRATE_TEMPERATURE" ;
1244    String onstr="ON_SOURCE" ;
1245    String offstr="OFF_SOURCE" ;
1246    String pswitch="POSITION_SWITCH" ;
1247    String nod="NOD" ;
1248    String fswitch="FREQUENCY_SWITCH" ;
1249    String sigstr="SIG" ;
1250    String refstr="REF" ;
1251    String unspecified="UNSPECIFIED" ;
1252    String ftlow="LOWER" ;
1253    String fthigh="HIGHER" ;
1254    switch ( type ) {
1255    case SrcType::PSON:
1256      stype = target+sep1+onstr+sep2+pswitch ;
1257      b = True ;
1258      break ;
1259    case SrcType::PSOFF:
1260      stype = target+sep1+offstr+sep2+pswitch ;
1261      b = False ;
1262      break ;
1263    case SrcType::NOD:
1264      stype = target+sep1+onstr+sep2+nod ;
1265      b = True ;
1266      break ;
1267    case SrcType::FSON:
1268      stype = target+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1269      b = True ;
1270      break ;
1271    case SrcType::FSOFF:
1272      stype = target+sep1+onstr+sep2+fswitch+sep1+refstr ;
1273      b = False ;
1274      break ;
1275    case SrcType::SKY:
1276      stype = atmcal+sep1+offstr+sep2+unspecified ;
1277      b = False ;
1278      break ;
1279    case SrcType::HOT:
1280      stype = atmcal+sep1+offstr+sep2+unspecified ;
1281      b = False ;
1282      break ;
1283    case SrcType::WARM:
1284      stype = atmcal+sep1+offstr+sep2+unspecified ;
1285      b = False ;
1286      break ;
1287    case SrcType::COLD:
1288      stype = atmcal+sep1+offstr+sep2+unspecified ;
1289      b = False ;
1290      break ;
1291    case SrcType::PONCAL:
1292      stype = atmcal+sep1+onstr+sep2+pswitch ;
1293      b = True ;
1294      break ;
1295    case SrcType::POFFCAL:
1296      stype = atmcal+sep1+offstr+sep2+pswitch ;
1297      b = False ;
1298      break ;
1299    case SrcType::NODCAL:
1300      stype = atmcal+sep1+onstr+sep2+nod ;
1301      b = True ;
1302      break ;
1303    case SrcType::FONCAL:
1304      stype = atmcal+sep1+onstr+sep2+fswitch+sep1+sigstr ;
1305      b = True ;
1306      break ;
1307    case SrcType::FOFFCAL:
1308      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+refstr ;
1309      b = False ;
1310      break ;
1311    case SrcType::FSLO:
1312      stype = target+sep1+onstr+sep2+fswitch+sep1+ftlow ;
1313      b = True ;
1314      break ;
1315    case SrcType::FLOOFF:
1316      stype = target+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1317      b = False ;
1318      break ;
1319    case SrcType::FLOSKY:
1320      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1321      b = False ;
1322      break ;
1323    case SrcType::FLOHOT:
1324      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1325      b = False ;
1326      break ;
1327    case SrcType::FLOWARM:
1328      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1329      b = False ;
1330      break ;
1331    case SrcType::FLOCOLD:
1332      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+ftlow ;
1333      b = False ;
1334      break ;
1335    case SrcType::FSHI:
1336      stype = target+sep1+onstr+sep2+fswitch+sep1+fthigh ;
1337      b = True ;
1338      break ;
1339    case SrcType::FHIOFF:
1340      stype = target+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1341      b = False ;
1342      break ;
1343    case SrcType::FHISKY:
1344      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1345      b = False ;
1346      break ;
1347    case SrcType::FHIHOT:
1348      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1349      b = False ;
1350      break ;
1351    case SrcType::FHIWARM:
1352      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1353      b = False ;
1354      break ;
1355    case SrcType::FHICOLD:
1356      stype = atmcal+sep1+offstr+sep2+fswitch+sep1+fthigh ;
1357      b = False ;
1358      break ;
1359    case SrcType::SIG:
1360      stype = target+sep1+onstr+sep2+unspecified ;
1361      b = True ;
1362      break ;
1363    case SrcType::REF:
1364      stype = target+sep1+offstr+sep2+unspecified ;
1365      b = False ;
1366      break ;
1367    default:
1368      stype = unspecified ;
1369      b = True ;
1370      break ;
1371    }
1372  }
1373  void initCorrProductTemplate()
1374  {
1375    Int n = 1 ;
1376    {
1377      Matrix<Int> c( 2, n, 0 ) ;
1378      corrProductTemplate[n] = c ;
1379    }
1380    n = 2 ;
1381    {
1382      Matrix<Int> c( 2, n, 0 ) ;
1383      c.column( 1 ) = 1 ;
1384      corrProductTemplate[n] = c ;
1385    }
1386    n = 4 ;
1387    {
1388      Matrix<Int> c( 2, n, 0 ) ;
1389      c( 0, 2 ) = 1 ;
1390      c( 0, 3 ) = 1 ;
1391      c( 1, 1 ) = 1 ;
1392      c( 1, 3 ) = 1 ;
1393      corrProductTemplate[n] = c ;
1394    }
1395  }
1396
1397  Table &ms;
1398  TableRow row;
1399  uInt rowidx;
1400  String fieldName;
1401  Int fieldId;
1402  Int srcId;
1403  Int defaultFieldId;
1404  Int spwId;
1405  Int feedId;
1406  Int subscan;
1407  CountedPtr<DataHolder> holder;
1408  String ptName;
1409  Bool useFloat;
1410  String poltype;
1411
1412  // MS subtables
1413  Table spwtab;
1414  Table statetab;
1415  Table ddtab;
1416  Table poltab;
1417  Table fieldtab;
1418  Table feedtab;
1419  Table potab;
1420
1421  // Scantable MAIN columns
1422  ROArrayColumn<Float> spectraCol;
1423  ROArrayColumn<Double> directionCol,scanRateCol,sourceDirectionCol;
1424  ROArrayColumn<uChar> flagtraCol;
1425  ROTableColumn tcalIdCol,intervalCol,flagRowCol,timeCol,freqIdCol,
1426    sourceNameCol,fieldNameCol;
1427
1428  // MS MAIN columns
1429  RecordFieldPtr<Int> dataDescIdRF,fieldIdRF,feed1RF,feed2RF,
1430    scanNumberRF,stateIdRF;
1431  RecordFieldPtr<Double> timeRF,timeCentroidRF,intervalRF,exposureRF;
1432
1433  // MS POINTING columns
1434  TableRow porow;
1435  RecordFieldPtr<Int> poNumPolyRF ;
1436  RecordFieldPtr<Double> poTimeRF,
1437    poTimeOriginRF,
1438    poIntervalRF ;
1439  RecordFieldPtr<String> poNameRF ;
1440  RecordFieldPtr< Matrix<Double> > poDirectionRF,
1441    poTargetRF ;
1442
1443  Vector<String> stateEntry;
1444  Matrix<Int> ddEntry;
1445  Matrix<Int> feedEntry;
1446  vector< Vector<Int> > polEntry;
1447  map<uInt,Bool> processedFreqId;
1448  map<uInt,Double> refpix;
1449  map<uInt,Double> refval;
1450  map<uInt,Double> increment;
1451  MFrequency::Types freqframe;
1452  Record srcRec;
1453  map< Int, Matrix<Int> > corrProductTemplate;
1454};
1455
1456class BaseMSSysCalVisitor: public TableVisitor {
1457  uInt lastRecordNo;
1458  uInt lastBeamNo, lastIfNo, lastPolNo;
1459  Double lastTime;
1460protected:
1461  const Table &table;
1462  uInt count;
1463public:
1464  BaseMSSysCalVisitor(const Table &table)
1465    : table(table)
1466  {
1467    count = 0;
1468  }
1469 
1470  virtual void enterBeamNo(const uInt recordNo, uInt columnValue) { }
1471  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue) { }
1472  virtual void enterIfNo(const uInt recordNo, uInt columnValue) { }
1473  virtual void leaveIfNo(const uInt recordNo, uInt columnValue) { }
1474  virtual void enterPolNo(const uInt recordNo, uInt columnValue) { }
1475  virtual void leavePolNo(const uInt recordNo, uInt columnValue) { }
1476  virtual void enterTime(const uInt recordNo, Double columnValue) { }
1477  virtual void leaveTime(const uInt recordNo, Double columnValue) { }
1478
1479  virtual Bool visitRecord(const uInt recordNo,
1480                           const uInt beamNo,
1481                           const uInt ifNo,
1482                           const uInt polNo,
1483                           const Double time) { return True ;}
1484
1485  virtual Bool visit(Bool isFirst, const uInt recordNo,
1486                     const uInt nCols, void const *const colValues[]) {
1487    uInt beamNo, ifNo, polNo;
1488    Double time;
1489    { // prologue
1490      uInt i = 0;
1491      {
1492        const uInt *col = (const uInt *)colValues[i++];
1493        beamNo = col[recordNo];
1494      }
1495      {
1496        const uInt *col = (const uInt *)colValues[i++];
1497        ifNo = col[recordNo];
1498      }
1499      {
1500        const Double *col = (const Double *)colValues[i++];
1501        time = col[recordNo];
1502      }
1503      {
1504        const uInt *col = (const uInt *)colValues[i++];
1505        polNo = col[recordNo];
1506      }
1507      assert(nCols == i);
1508    }
1509
1510    if (isFirst) {
1511      enterBeamNo(recordNo, beamNo);
1512      enterIfNo(recordNo, ifNo);
1513      enterTime(recordNo, time);
1514      enterPolNo(recordNo, polNo);
1515    } else {
1516      if (lastBeamNo != beamNo) {
1517        leavePolNo(lastRecordNo, lastPolNo);
1518        leaveTime(lastRecordNo, lastTime);
1519        leaveIfNo(lastRecordNo, lastIfNo);
1520        leaveBeamNo(lastRecordNo, lastBeamNo);
1521
1522        enterBeamNo(recordNo, beamNo);
1523        enterIfNo(recordNo, ifNo);
1524        enterTime(recordNo, time);
1525        enterPolNo(recordNo, polNo);
1526      } else if (lastIfNo != ifNo) {
1527        leavePolNo(lastRecordNo, lastPolNo);
1528        leaveTime(lastRecordNo, lastTime);
1529        leaveIfNo(lastRecordNo, lastIfNo);
1530       
1531        enterIfNo(recordNo, ifNo);
1532        enterTime(recordNo, time);
1533        enterPolNo(recordNo, polNo);
1534      } else if (lastTime != time) {
1535        leavePolNo(lastRecordNo, lastPolNo);
1536        leaveTime(lastRecordNo, lastTime);
1537
1538        enterTime(recordNo, time);
1539        enterPolNo(recordNo, polNo);
1540      } else if (lastPolNo != polNo) {
1541        leavePolNo(lastRecordNo, lastPolNo);
1542        enterPolNo(recordNo, polNo);
1543      }
1544    }
1545    count++;
1546    Bool result = visitRecord(recordNo, beamNo, ifNo, polNo, time);
1547
1548    { // epilogue
1549      lastRecordNo = recordNo;
1550
1551      lastBeamNo = beamNo;
1552      lastIfNo = ifNo;
1553      lastPolNo = polNo;
1554      lastTime = time;
1555    }
1556    return result ;
1557  }
1558
1559  virtual void finish() {
1560    if (count > 0) {
1561      leavePolNo(lastRecordNo, lastPolNo);
1562      leaveTime(lastRecordNo, lastTime);
1563      leaveIfNo(lastRecordNo, lastIfNo);
1564      leaveBeamNo(lastRecordNo, lastBeamNo);
1565    }
1566  }
1567};
1568
1569class BaseTsysHolder
1570{
1571public:
1572  BaseTsysHolder( ROArrayColumn<Float> &tsysCol )
1573    : col( tsysCol ),
1574      nchan(0)
1575  {
1576    reset() ;
1577  }
1578  virtual ~BaseTsysHolder() {}
1579  virtual Array<Float> getTsys() = 0 ;
1580  void setNchan( uInt n ) { nchan = n ; }
1581  void appendTsys( uInt row )
1582  {
1583    Vector<Float> v = col( row ) ;
1584    uInt len = tsys.nrow() ;
1585    tsys.resize( len+1, nchan, True ) ;
1586    if ( v.nelements() == nchan )
1587      tsys.row( len ) = v ;
1588    else
1589      tsys.row( len ) = v[0] ;
1590  }
1591  void setTsys( uInt row, uInt idx )
1592  {
1593    if ( idx >= nrow() )
1594      appendTsys( row ) ;
1595    else {
1596      Vector<Float> v = col( row ) ;
1597      if ( v.nelements() == nchan )
1598        tsys.row( idx ) = v ;
1599      else
1600        tsys.row( idx ) = v[0] ;
1601    }
1602  }
1603  void reset()
1604  {
1605    tsys.resize() ;
1606  }
1607  uInt nrow() { return tsys.nrow() ; }
1608  Bool isEffective()
1609  {
1610    return ( !(tsys.empty()) && anyNE( tsys, (Float)1.0 ) ) ;
1611  }
1612  BaseTsysHolder &operator= ( const BaseTsysHolder &v )
1613  {
1614    if ( this != &v )
1615      tsys.assign( v.tsys ) ;
1616    return *this ;
1617  }
1618protected:
1619  ROArrayColumn<Float> col ;
1620  Matrix<Float> tsys ;
1621  uInt nchan ;
1622};
1623
1624class TsysHolder : public BaseTsysHolder
1625{
1626public:
1627  TsysHolder( ROArrayColumn<Float> &tsysCol )
1628    : BaseTsysHolder( tsysCol )
1629  {}
1630  virtual ~TsysHolder() {}
1631  virtual Array<Float> getTsys()
1632  {
1633    return tsys.column( 0 ) ;
1634  }
1635};
1636
1637class TsysSpectrumHolder : public BaseTsysHolder
1638{
1639public:
1640  TsysSpectrumHolder( ROArrayColumn<Float> &tsysCol )
1641    : BaseTsysHolder( tsysCol )
1642  {}
1643  virtual ~TsysSpectrumHolder() {}
1644  virtual Array<Float> getTsys()
1645  {
1646    return tsys ;
1647  }
1648};
1649
1650class BaseTcalProcessor
1651{
1652public:
1653  BaseTcalProcessor( ROArrayColumn<Float> &tcalCol )
1654    : col( tcalCol )
1655  {}
1656  virtual ~BaseTcalProcessor() {}
1657  void setTcalId( Vector<uInt> &tcalId ) { id.assign( tcalId ) ; }
1658  virtual Array<Float> getTcal() = 0 ;
1659protected:
1660  ROArrayColumn<Float> col ;
1661  Vector<uInt> id ;
1662};
1663
1664class TcalProcessor : public BaseTcalProcessor
1665{
1666public:
1667  TcalProcessor( ROArrayColumn<Float> &tcalCol )
1668    : BaseTcalProcessor( tcalCol )
1669  {}
1670  virtual ~TcalProcessor() {}
1671  virtual Array<Float> getTcal()
1672  {
1673    uInt npol = id.nelements() ;
1674    Vector<Float> tcal( npol ) ;
1675    for ( uInt ipol = 0 ; ipol < npol ; ipol++ )
1676      tcal[ipol] = col( id[ipol] ).data()[0] ;
1677    //cout << "TcalProcessor: tcal = " << tcal << endl ;
1678    return tcal ;
1679  }
1680};
1681
1682class TcalSpectrumProcessor : public BaseTcalProcessor
1683{
1684public:
1685  TcalSpectrumProcessor( ROArrayColumn<Float> &tcalCol )
1686    : BaseTcalProcessor( tcalCol )
1687  {}
1688  virtual ~TcalSpectrumProcessor() {}
1689  virtual Array<Float> getTcal()
1690  {
1691    uInt npol = id.nelements() ;
1692    Vector<Float> tcal0 = col( 0 ) ;
1693    uInt nchan = tcal0.nelements() ;
1694    Matrix<Float> tcal( npol, nchan ) ;
1695    tcal.row( 0 ) = tcal0 ;
1696    for ( uInt ipol = 1 ; ipol < npol ; ipol++ )
1697      tcal.row( ipol ) = col( id[ipol] ) ;
1698    return tcal ;
1699  }
1700};
1701
1702class MSSysCalVisitor : public BaseMSSysCalVisitor
1703{
1704public:
1705  MSSysCalVisitor( const Table &from, Table &to )
1706    : BaseMSSysCalVisitor( from ),
1707      sctab( to ),
1708      rowidx( 0 )
1709  {
1710    scrow = TableRow( sctab ) ;
1711
1712    lastTcalId.resize() ;
1713    theTcalId.resize() ;
1714    startTime = 0.0 ;
1715    endTime = 0.0 ;
1716
1717    const TableRecord &keys = table.keywordSet() ;
1718    Table tcalTable = keys.asTable( "TCAL" ) ;
1719    tcalCol.attach( tcalTable, "TCAL" ) ;
1720    tsysCol.attach( table, "TSYS" ) ;
1721    tcalIdCol.attach( table, "TCAL_ID" ) ;
1722    intervalCol.attach( table, "INTERVAL" ) ;
1723    effectiveTcal.resize( tcalTable.nrow() ) ;
1724    for ( uInt irow = 0 ; irow < tcalTable.nrow() ; irow++ ) {
1725      if ( allEQ( tcalCol( irow ), (Float)1.0 ) )
1726        effectiveTcal[irow] = False ;
1727      else
1728        effectiveTcal[irow] = True ;
1729    }
1730   
1731    TableRecord &r = scrow.record() ;
1732    RecordFieldPtr<Int> antennaIdRF( r, "ANTENNA_ID" ) ;
1733    *antennaIdRF = 0 ;
1734    feedIdRF.attachToRecord( r, "FEED_ID" ) ;
1735    specWinIdRF.attachToRecord( r, "SPECTRAL_WINDOW_ID" ) ;
1736    timeRF.attachToRecord( r, "TIME" ) ;
1737    intervalRF.attachToRecord( r, "INTERVAL" ) ;
1738    if ( r.isDefined( "TCAL" ) ) {
1739      tcalRF.attachToRecord( r, "TCAL" ) ;
1740      tcalProcessor = new TcalProcessor( tcalCol ) ;
1741    }
1742    else if ( r.isDefined( "TCAL_SPECTRUM" ) ) {
1743      tcalRF.attachToRecord( r, "TCAL_SPECTRUM" ) ;
1744      tcalProcessor = new TcalSpectrumProcessor( tcalCol ) ;
1745    }
1746    if ( r.isDefined( "TSYS" ) ) {
1747      tsysRF.attachToRecord( r, "TSYS" ) ;
1748      theTsys = new TsysHolder( tsysCol ) ;
1749      lastTsys = new TsysHolder( tsysCol ) ;
1750    }
1751    else {
1752      tsysRF.attachToRecord( r, "TSYS_SPECTRUM" ) ;
1753      theTsys = new TsysSpectrumHolder( tsysCol ) ;
1754      lastTsys = new TsysSpectrumHolder( tsysCol ) ;
1755    }
1756
1757  }
1758
1759  virtual void enterBeamNo(const uInt recordNo, uInt columnValue)
1760  {
1761    *feedIdRF = (Int)columnValue ;
1762  }
1763  virtual void leaveBeamNo(const uInt recordNo, uInt columnValue)
1764  {
1765  }
1766  virtual void enterIfNo(const uInt recordNo, uInt columnValue)
1767  {
1768    //cout << "enterIfNo" << endl ;
1769    ROArrayColumn<Float> sp( table, "SPECTRA" ) ;
1770    uInt nchan = sp( recordNo ).nelements() ;
1771    theTsys->setNchan( nchan ) ;
1772    lastTsys->setNchan( nchan ) ;
1773
1774    *specWinIdRF = (Int)columnValue ;
1775  }
1776  virtual void leaveIfNo(const uInt recordNo, uInt columnValue)
1777  {
1778    //cout << "leaveIfNo" << endl ;
1779    post() ;
1780    lastTsys->reset() ;
1781    lastTcalId.resize() ;
1782    theTsys->reset() ;
1783    theTcalId.resize() ;
1784    startTime = 0.0 ;
1785    endTime = 0.0 ;
1786  }
1787  virtual void enterTime(const uInt recordNo, Double columnValue)
1788  {
1789    //cout << "enterTime" << endl ;
1790    interval = intervalCol.asdouble( recordNo ) ;
1791    // start time and end time
1792    if ( startTime == 0.0 ) {
1793      startTime = columnValue * 86400.0 - 0.5 * interval ;
1794      endTime = columnValue * 86400.0 + 0.5 * interval ;
1795    }
1796  }
1797  virtual void leaveTime(const uInt recordNo, Double columnValue)
1798  {
1799    //cout << "leaveTime" << endl ;
1800    if ( isUpdated() ) {
1801      post() ;
1802      *lastTsys = *theTsys ;
1803      lastTcalId = theTcalId ;
1804      theTsys->reset() ;
1805      theTcalId.resize() ;
1806      startTime = columnValue * 86400.0 - 0.5 * interval ;
1807      endTime = columnValue * 86400.0 + 0.5 * interval ;
1808    }
1809    else {
1810      endTime = columnValue * 86400.0 + 0.5 * interval ;
1811    }
1812  }
1813  virtual void enterPolNo(const uInt recordNo, uInt columnValue)
1814  {
1815    //cout << "enterPolNo" << endl ;
1816    Vector<Float> tsys = tsysCol( recordNo ) ;
1817    uInt tcalId = tcalIdCol.asuInt( recordNo ) ;
1818    // lastTsys.nrow() must be npol
1819    if ( lastTsys->nrow() == columnValue )
1820      lastTsys->appendTsys( recordNo ) ;
1821    // lastTcalId.nelements() must be npol
1822    if ( lastTcalId.nelements() == columnValue )
1823      appendTcalId( lastTcalId, tcalId, columnValue ) ;
1824    // theTsys.nrow() must be npol
1825    if ( theTsys->nrow() == columnValue )
1826      theTsys->appendTsys( recordNo ) ;
1827    else {
1828      theTsys->setTsys( recordNo, columnValue ) ;
1829    }
1830    if ( theTcalId.nelements() == columnValue )
1831      appendTcalId( theTcalId, tcalId, columnValue ) ;
1832    else
1833      setTcalId( theTcalId, tcalId, columnValue ) ;
1834  }
1835  virtual void leavePolNo( const uInt recordNo, uInt columnValue )
1836  {
1837  }
1838   
1839private:
1840  void appendTcalId( Vector<uInt> &v, uInt &elem, uInt &polId )
1841  {
1842    v.resize( polId+1, True ) ;
1843    v[polId] = elem ;
1844  }
1845  void setTcalId( Vector<uInt> &v, uInt &elem, uInt &polId )
1846  {
1847    v[polId] = elem ;
1848  }
1849  void post()
1850  {
1851    // check if given Tcal and Tsys is effective
1852    Bool isEffective = False ;
1853    for ( uInt ipol = 0 ; ipol < lastTcalId.nelements() ; ipol++ ) {
1854      if ( effectiveTcal[lastTcalId[ipol]] ) {
1855        isEffective = True ;
1856        break ;
1857      }
1858    }
1859    if ( !isEffective ) {
1860      if ( !(lastTsys->isEffective()) )
1861        return ;
1862    }
1863
1864    //cout << " interval: " << (endTime-startTime) << " lastTcalId = " << lastTcalId << endl ;
1865    Double midTime = 0.5 * ( startTime + endTime ) ;
1866    Double interval = endTime - startTime ;
1867    *timeRF = midTime ;
1868    *intervalRF = interval ;
1869    tcalProcessor->setTcalId( lastTcalId ) ;
1870    Array<Float> tcal = tcalProcessor->getTcal() ;
1871    tcalRF.define( tcal ) ;
1872    tsysRF.define( lastTsys->getTsys() ) ;
1873    sctab.addRow( 1, True ) ;
1874    scrow.put( rowidx ) ;
1875    rowidx++ ;
1876  }
1877 
1878  Bool isUpdated()
1879  {
1880    Bool ret = False ;
1881    ret = anyNE( theTcalId, lastTcalId ) ;
1882    if ( !ret )
1883      ret = anyNE( theTsys->getTsys(), lastTsys->getTsys() ) ;
1884    return ret ;
1885  }
1886
1887  Table &sctab;
1888  TableRow scrow;
1889  uInt rowidx;
1890
1891  Double startTime,endTime,interval;
1892 
1893  CountedPtr<BaseTsysHolder> lastTsys,theTsys;
1894  Vector<uInt> lastTcalId,theTcalId;
1895  CountedPtr<BaseTcalProcessor> tcalProcessor ;
1896  Vector<Bool> effectiveTcal;
1897
1898  RecordFieldPtr<Int> feedIdRF,specWinIdRF;
1899  RecordFieldPtr<Double> timeRF,intervalRF;
1900  RecordFieldPtr< Array<Float> > tcalRF,tsysRF;
1901
1902  ROArrayColumn<Float> tsysCol,tcalCol;
1903  ROTableColumn tcalIdCol,intervalCol;
1904};
1905
1906MSWriter::MSWriter(CountedPtr<Scantable> stable)
1907  : table_(stable),
1908    isWeather_(False),
1909    tcalSpec_(False),
1910    tsysSpec_(False),
1911    ptTabName_("")
1912{
1913  os_ = LogIO() ;
1914  os_.origin( LogOrigin( "MSWriter", "MSWriter()", WHERE ) ) ;
1915//   os_ << "MSWriter::MSWriter()" << LogIO::POST ;
1916
1917  // initialize writer
1918  init() ;
1919}
1920
1921MSWriter::~MSWriter()
1922{
1923  os_.origin( LogOrigin( "MSWriter", "~MSWriter()", WHERE ) ) ;
1924//   os_ << "MSWriter::~MSWriter()" << LogIO::POST ;
1925
1926  if ( mstable_ != 0 )
1927    delete mstable_ ;
1928}
1929
1930bool MSWriter::write(const string& filename, const Record& rec)
1931{
1932  os_.origin( LogOrigin( "MSWriter", "write()", WHERE ) ) ;
1933  //double startSec = mathutil::gettimeofday_sec() ;
1934  //os_ << "start MSWriter::write() startSec=" << startSec << LogIO::POST ;
1935
1936  filename_ = filename ;
1937
1938  // parsing MS options
1939  Bool overwrite = False ;
1940  if ( rec.isDefined( "ms" ) ) {
1941    Record msrec = rec.asRecord( "ms" ) ;
1942    if ( msrec.isDefined( "overwrite" ) ) {
1943      overwrite = msrec.asBool( "overwrite" ) ;
1944    }
1945  }
1946
1947  os_ << "Parsing MS options" << endl ;
1948  os_ << "   overwrite = " << overwrite << LogIO::POST ;
1949
1950  File file( filename_ ) ;
1951  if ( file.exists() ) {
1952    if ( overwrite ) {
1953      os_ << filename_ << " exists. Overwrite existing data... " << LogIO::POST ;
1954      if ( file.isRegular() ) RegularFile(file).remove() ;
1955      else if ( file.isDirectory() ) Directory(file).removeRecursive() ;
1956      else SymLink(file).remove() ;
1957    }
1958    else {
1959      os_ << LogIO::SEVERE << "ERROR: " << filename_ << " exists..." << LogIO::POST ;
1960      return False ;
1961    }
1962  }
1963
1964  // set up MS
1965  setupMS() ;
1966 
1967  // subtables
1968  // OBSERVATION
1969  fillObservation() ;
1970
1971  // ANTENNA
1972  fillAntenna() ;
1973
1974  // PROCESSOR
1975  fillProcessor() ;
1976
1977  // SOURCE
1978  fillSource() ;
1979
1980  // WEATHER
1981  if ( isWeather_ )
1982    fillWeather() ;
1983
1984  // SYSCAL
1985  fillSysCal() ;
1986
1987  /***
1988   * Start iteration using TableVisitor
1989   ***/
1990  {
1991    static const char *cols[] = {
1992      "FIELDNAME", "BEAMNO", "SCANNO", "IFNO", "SRCTYPE", "CYCLENO", "TIME",
1993      "POLNO",
1994      NULL
1995    };
1996    static const TypeManagerImpl<uInt> tmUInt;
1997    static const TypeManagerImpl<Int> tmInt;
1998    static const TypeManagerImpl<Double> tmDouble;
1999    static const TypeManagerImpl<String> tmString;
2000    static const TypeManager *const tms[] = {
2001      &tmString, &tmUInt, &tmUInt, &tmUInt, &tmInt, &tmUInt, &tmDouble, &tmUInt, NULL
2002    };
2003    //double t0 = mathutil::gettimeofday_sec() ;
2004    MSWriterVisitor myVisitor(table_->table(),*mstable_);
2005    //double t1 = mathutil::gettimeofday_sec() ;
2006    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2007    String dataColName = "FLOAT_DATA" ;
2008    if ( useData_ )
2009      dataColName = "DATA" ;
2010    myVisitor.dataColumnName( dataColName ) ;
2011    myVisitor.pointingTableName( ptTabName_ ) ;
2012    myVisitor.setSourceRecord( srcRec_ ) ;
2013    //double t2 = mathutil::gettimeofday_sec() ;
2014    traverseTable(table_->table(), cols, tms, &myVisitor);
2015    //double t3 = mathutil::gettimeofday_sec() ;
2016    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2017  }
2018  /***
2019   * End iteration using TableVisitor
2020   ***/
2021
2022  // ASDM tables
2023  const TableRecord &stKeys = table_->table().keywordSet() ;
2024  TableRecord &msKeys = mstable_->rwKeywordSet() ;
2025  uInt nfields = stKeys.nfields() ;
2026  for ( uInt ifield = 0 ; ifield < nfields ; ifield++ ) {
2027    String kname = stKeys.name( ifield ) ;
2028    if ( kname.find( "ASDM" ) != String::npos ) {
2029      String asdmpath = stKeys.asString( ifield ) ;
2030      os_ << "found ASDM table: " << asdmpath << LogIO::POST ;
2031      if ( Table::isReadable( asdmpath ) ) {
2032        Table newAsdmTab( asdmpath, Table::Old ) ;
2033        newAsdmTab.copy( filename_+"/"+kname, Table::New ) ;
2034        os_ << "add subtable: " << kname << LogIO::POST ;
2035        msKeys.defineTable( kname, Table( filename_+"/"+kname, Table::Old ) ) ;
2036      }
2037    }
2038  }
2039
2040  // replace POINTING table with original one if exists
2041  if ( ptTabName_ != "" ) {
2042    delete mstable_ ;
2043    mstable_ = 0 ;
2044    Table newPtTab( ptTabName_, Table::Old ) ;
2045    newPtTab.copy( filename_+"/POINTING", Table::New ) ;
2046  }
2047
2048  //double endSec = mathutil::gettimeofday_sec() ;
2049  //os_ << "end MSWriter::write() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2050
2051  return True ;
2052}
2053
2054void MSWriter::init()
2055{
2056//   os_.origin( LogOrigin( "MSWriter", "init()", WHERE ) ) ;
2057//   double startSec = mathutil::gettimeofday_sec() ;
2058//   os_ << "start MSWriter::init() startSec=" << startSec << LogIO::POST ;
2059 
2060  // access to scantable
2061  header_ = table_->getHeader() ;
2062
2063  // FLOAT_DATA? or DATA?
2064  if ( header_.npol > 2 ) {
2065    useFloatData_ = False ;
2066    useData_ = True ;
2067  }
2068  else {
2069    useFloatData_ = True ;
2070    useData_ = False ;
2071  }
2072
2073  // polarization type
2074  polType_ = header_.poltype ;
2075  if ( polType_ == "" )
2076    polType_ = "stokes" ;
2077  else if ( polType_.find( "linear" ) != String::npos )
2078    polType_ = "linear" ;
2079  else if ( polType_.find( "circular" ) != String::npos )
2080    polType_ = "circular" ;
2081  else if ( polType_.find( "stokes" ) != String::npos )
2082    polType_ = "stokes" ;
2083  else if ( polType_.find( "linpol" ) != String::npos )
2084    polType_ = "linpol" ;
2085  else
2086    polType_ = "notype" ;
2087
2088  // Check if some subtables are exists
2089  Bool isTcal = False ;
2090  if ( table_->tcal().table().nrow() != 0 ) {
2091    ROTableColumn col( table_->tcal().table(), "TCAL" ) ;
2092    if ( col.isDefined( 0 ) ) {
2093      os_ << "TCAL table exists: nrow=" << table_->tcal().table().nrow() << LogIO::POST ;
2094      isTcal = True ;
2095    }
2096    else {
2097      os_ << "No TCAL rows" << LogIO::POST ;
2098    }
2099  }
2100  else {
2101    os_ << "No TCAL rows" << LogIO::POST ;
2102  }
2103  if ( table_->weather().table().nrow() != 0 ) {
2104    ROTableColumn col( table_->weather().table(), "TEMPERATURE" ) ;
2105    if ( col.isDefined( 0 ) ) {
2106      os_ << "WEATHER table exists: nrow=" << table_->weather().table().nrow() << LogIO::POST ;
2107      isWeather_ =True ;
2108    }
2109    else {
2110      os_ << "No WEATHER rows" << LogIO::POST ;
2111    }
2112  }
2113  else {
2114    os_ << "No WEATHER rows" << LogIO::POST ;
2115  }
2116
2117  // Are TCAL_SPECTRUM and TSYS_SPECTRUM necessary?
2118  if ( header_.nchan != 1 ) {
2119    if ( isTcal ) {
2120      // examine TCAL subtable
2121      Table tcaltab = table_->tcal().table() ;
2122      ROArrayColumn<Float> tcalCol( tcaltab, "TCAL" ) ;
2123      for ( uInt irow = 0 ; irow < tcaltab.nrow() ; irow++ ) {
2124        if ( tcalCol( irow ).size() != 1 )
2125          tcalSpec_ = True ;
2126      }
2127    }
2128    // examine spectral data
2129    TableIterator iter0( table_->table(), "IFNO" ) ;
2130    while( !iter0.pastEnd() ) {
2131      Table t0( iter0.table() ) ;
2132      ROArrayColumn<Float> sharedFloatArrCol( t0, "SPECTRA" ) ;
2133      uInt len = sharedFloatArrCol( 0 ).size() ;
2134      if ( len != 1 ) {
2135        sharedFloatArrCol.attach( t0, "TSYS" ) ;
2136        if ( sharedFloatArrCol( 0 ).size() != 1 )
2137          tsysSpec_ = True ;
2138      }
2139      iter0.next() ;
2140    }
2141  }
2142
2143  // check if reference for POINTING table exists
2144  const TableRecord &rec = table_->table().keywordSet() ;
2145  if ( rec.isDefined( "POINTING" ) ) {
2146    ptTabName_ = rec.asString( "POINTING" ) ;
2147    if ( !Table::isReadable( ptTabName_ ) ) {
2148      ptTabName_ = "" ;
2149    }
2150  }
2151
2152//   double endSec = mathutil::gettimeofday_sec() ;
2153//   os_ << "end MSWriter::init() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2154}
2155
2156void MSWriter::setupMS()
2157{
2158//   os_.origin( LogOrigin( "MSWriter", "setupMS()", WHERE ) ) ;
2159//   double startSec = mathutil::gettimeofday_sec() ;
2160//   os_ << "start MSWriter::setupMS() startSec=" << startSec << LogIO::POST ;
2161 
2162  String dunit = table_->getHeader().fluxunit ;
2163
2164  TableDesc msDesc = MeasurementSet::requiredTableDesc() ;
2165  if ( useFloatData_ )
2166    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::FLOAT_DATA, 2 ) ;
2167  else if ( useData_ )
2168    MeasurementSet::addColumnToDesc( msDesc, MSMainEnums::DATA, 2 ) ;
2169
2170  SetupNewTable newtab( filename_, msDesc, Table::New ) ;
2171
2172  mstable_ = new MeasurementSet( newtab ) ;
2173
2174  TableColumn col ;
2175  if ( useFloatData_ )
2176    col.attach( *mstable_, "FLOAT_DATA" ) ;
2177  else if ( useData_ )
2178    col.attach( *mstable_, "DATA" ) ;
2179  col.rwKeywordSet().define( "UNIT", dunit ) ;
2180
2181  // create subtables
2182  TableDesc antennaDesc = MSAntenna::requiredTableDesc() ;
2183  SetupNewTable antennaTab( mstable_->antennaTableName(), antennaDesc, Table::New ) ;
2184  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::ANTENNA ), Table( antennaTab ) ) ;
2185
2186  TableDesc dataDescDesc = MSDataDescription::requiredTableDesc() ;
2187  SetupNewTable dataDescTab( mstable_->dataDescriptionTableName(), dataDescDesc, Table::New ) ;
2188  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DATA_DESCRIPTION ), Table( dataDescTab ) ) ;
2189
2190  TableDesc dopplerDesc = MSDoppler::requiredTableDesc() ;
2191  SetupNewTable dopplerTab( mstable_->dopplerTableName(), dopplerDesc, Table::New ) ;
2192  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::DOPPLER ), Table( dopplerTab ) ) ;
2193
2194  TableDesc feedDesc = MSFeed::requiredTableDesc() ;
2195  SetupNewTable feedTab( mstable_->feedTableName(), feedDesc, Table::New ) ;
2196  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FEED ), Table( feedTab ) ) ;
2197
2198  TableDesc fieldDesc = MSField::requiredTableDesc() ;
2199  SetupNewTable fieldTab( mstable_->fieldTableName(), fieldDesc, Table::New ) ;
2200  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FIELD ), Table( fieldTab ) ) ;
2201
2202  TableDesc flagCmdDesc = MSFlagCmd::requiredTableDesc() ;
2203  SetupNewTable flagCmdTab( mstable_->flagCmdTableName(), flagCmdDesc, Table::New ) ;
2204  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FLAG_CMD ), Table( flagCmdTab ) ) ;
2205
2206  TableDesc freqOffsetDesc = MSFreqOffset::requiredTableDesc() ;
2207  SetupNewTable freqOffsetTab( mstable_->freqOffsetTableName(), freqOffsetDesc, Table::New ) ;
2208  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::FREQ_OFFSET ), Table( freqOffsetTab ) ) ;
2209
2210  TableDesc historyDesc = MSHistory::requiredTableDesc() ;
2211  SetupNewTable historyTab( mstable_->historyTableName(), historyDesc, Table::New ) ;
2212  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::HISTORY ), Table( historyTab ) ) ;
2213
2214  TableDesc observationDesc = MSObservation::requiredTableDesc() ;
2215  SetupNewTable observationTab( mstable_->observationTableName(), observationDesc, Table::New ) ;
2216  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::OBSERVATION ), Table( observationTab ) ) ;
2217
2218  TableDesc pointingDesc = MSPointing::requiredTableDesc() ;
2219  SetupNewTable pointingTab( mstable_->pointingTableName(), pointingDesc, Table::New ) ;
2220  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POINTING ), Table( pointingTab ) ) ;
2221
2222  TableDesc polarizationDesc = MSPolarization::requiredTableDesc() ;
2223  SetupNewTable polarizationTab( mstable_->polarizationTableName(), polarizationDesc, Table::New ) ;
2224  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::POLARIZATION ), Table( polarizationTab ) ) ;
2225
2226  TableDesc processorDesc = MSProcessor::requiredTableDesc() ;
2227  SetupNewTable processorTab( mstable_->processorTableName(), processorDesc, Table::New ) ;
2228  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::PROCESSOR ), Table( processorTab ) ) ;
2229
2230  TableDesc sourceDesc = MSSource::requiredTableDesc() ;
2231  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::TRANSITION, 1 ) ;
2232  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::REST_FREQUENCY, 1 ) ;
2233  MSSource::addColumnToDesc( sourceDesc, MSSourceEnums::SYSVEL, 1 ) ;
2234  SetupNewTable sourceTab( mstable_->sourceTableName(), sourceDesc, Table::New ) ;
2235  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SOURCE ), Table( sourceTab ) ) ;
2236
2237  TableDesc spwDesc = MSSpectralWindow::requiredTableDesc() ;
2238  SetupNewTable spwTab( mstable_->spectralWindowTableName(), spwDesc, Table::New ) ;
2239  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SPECTRAL_WINDOW ), Table( spwTab ) ) ;
2240
2241  TableDesc stateDesc = MSState::requiredTableDesc() ;
2242  SetupNewTable stateTab( mstable_->stateTableName(), stateDesc, Table::New ) ;
2243  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::STATE ), Table( stateTab ) ) ;
2244
2245  TableDesc sysCalDesc = MSSysCal::requiredTableDesc() ;
2246  if ( tcalSpec_ )
2247    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL_SPECTRUM, 2 ) ;
2248  else
2249    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TCAL, 1 ) ;
2250  if ( tsysSpec_ )
2251    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS_SPECTRUM, 2 ) ;
2252  else
2253    MSSysCal::addColumnToDesc( sysCalDesc, MSSysCalEnums::TSYS, 1 ) ;
2254  SetupNewTable sysCalTab( mstable_->sysCalTableName(), sysCalDesc, Table::New ) ;
2255  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::SYSCAL ), Table( sysCalTab ) ) ;
2256
2257  TableDesc weatherDesc = MSWeather::requiredTableDesc() ;
2258  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::TEMPERATURE ) ;
2259  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::PRESSURE ) ;
2260  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::REL_HUMIDITY ) ;
2261  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_SPEED ) ;
2262  MSWeather::addColumnToDesc( weatherDesc, MSWeatherEnums::WIND_DIRECTION ) ;
2263  SetupNewTable weatherTab( mstable_->weatherTableName(), weatherDesc, Table::New ) ;
2264  mstable_->rwKeywordSet().defineTable( MeasurementSet::keywordName( MeasurementSet::WEATHER ), Table( weatherTab ) ) ;
2265
2266  mstable_->initRefs() ;
2267
2268//   double endSec = mathutil::gettimeofday_sec() ;
2269//   os_ << "end MSWriter::setupMS() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2270}
2271
2272void MSWriter::fillObservation()
2273{
2274  //double startSec = mathutil::gettimeofday_sec() ;
2275  //os_ << "start MSWriter::fillObservation() startSec=" << startSec << LogIO::POST ;
2276
2277  // only 1 row
2278  mstable_->observation().addRow( 1, True ) ;
2279  MSObservationColumns msObsCols( mstable_->observation() ) ;
2280  msObsCols.observer().put( 0, header_.observer ) ;
2281  // tentatively put antennaname (from ANTENNA subtable)
2282  String hAntennaName = header_.antennaname ;
2283  String::size_type pos = hAntennaName.find( "//" ) ;
2284  String telescopeName ;
2285  if ( pos != String::npos ) {
2286    telescopeName = hAntennaName.substr( 0, pos ) ;
2287  }
2288  else {
2289    pos = hAntennaName.find( "@" ) ;
2290    telescopeName = hAntennaName.substr( 0, pos ) ;
2291  }
2292//   os_ << "telescopeName = " << telescopeName << LogIO::POST ;
2293  msObsCols.telescopeName().put( 0, telescopeName ) ;
2294  msObsCols.project().put( 0, header_.project ) ;
2295  //ScalarMeasColumn<MEpoch> timeCol( table_->table().sort("TIME"), "TIME" ) ;
2296  Table sortedtable = table_->table().sort("TIME") ;
2297  ScalarMeasColumn<MEpoch> timeCol( sortedtable, "TIME" ) ;
2298  Vector<MEpoch> trange( 2 ) ;
2299  trange[0] = timeCol( 0 ) ;
2300  trange[1] = timeCol( table_->nrow()-1 ) ;
2301  msObsCols.timeRangeMeas().put( 0, trange ) ;
2302
2303  //double endSec = mathutil::gettimeofday_sec() ;
2304  //os_ << "end MSWriter::fillObservation() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2305}
2306
2307void MSWriter::antennaProperty( String &name, String &m, String &t, Double &d )
2308{
2309  name.upcase() ;
2310 
2311  m = "ALT-AZ" ;
2312  t = "GROUND-BASED" ;
2313  if ( name.matches( Regex( "DV[0-9]+$" ) )
2314       || name.matches( Regex( "DA[0-9]+$" ) )
2315       || name.matches( Regex( "PM[0-9]+$" ) ) )
2316    d = 12.0 ;
2317  else if ( name.matches( Regex( "CM[0-9]+$" ) ) )
2318    d = 7.0 ;
2319  else if ( name.contains( "GBT" ) )
2320    d = 104.9 ;
2321  else if ( name.contains( "MOPRA" ) )
2322    d = 22.0 ;
2323  else if ( name.contains( "PKS" ) || name.contains( "PARKS" ) )
2324    d = 64.0 ;
2325  else if ( name.contains( "TIDBINBILLA" ) )
2326    d = 70.0 ;
2327  else if ( name.contains( "CEDUNA" ) )
2328    d = 30.0 ;
2329  else if ( name.contains( "HOBART" ) )
2330    d = 26.0 ;
2331  else if ( name.contains( "APEX" ) )
2332    d = 12.0 ;
2333  else if ( name.contains( "ASTE" ) )
2334    d = 10.0 ;
2335  else if ( name.contains( "NRO" ) )
2336    d = 45.0 ;
2337  else
2338    d = 1.0 ;
2339}
2340
2341void MSWriter::fillAntenna()
2342{
2343  //double startSec = mathutil::gettimeofday_sec() ;
2344  //os_ << "start MSWriter::fillAntenna() startSec=" << startSec << LogIO::POST ;
2345
2346  // only 1 row
2347  Table anttab = mstable_->antenna() ;
2348  anttab.addRow( 1, True ) ;
2349 
2350  Table &table = table_->table() ;
2351  const TableRecord &keys = table.keywordSet() ;
2352  String hAntName = keys.asString( "AntennaName" ) ;
2353  String::size_type pos = hAntName.find( "//" ) ;
2354  String antennaName ;
2355  String stationName ;
2356  if ( pos != String::npos ) {
2357    stationName = hAntName.substr( 0, pos ) ;
2358    hAntName = hAntName.substr( pos+2 ) ;
2359  }
2360  pos = hAntName.find( "@" ) ;
2361  if ( pos != String::npos ) {
2362    antennaName = hAntName.substr( 0, pos ) ;
2363    stationName = hAntName.substr( pos+1 ) ;
2364  }
2365  else {
2366    antennaName = hAntName ;
2367  }
2368  Vector<Double> antpos = keys.asArrayDouble( "AntennaPosition" ) ;
2369 
2370  String mount, atype ;
2371  Double diameter ;
2372  antennaProperty( antennaName, mount, atype, diameter ) ;
2373 
2374  TableRow tr( anttab ) ;
2375  TableRecord &r = tr.record() ;
2376  RecordFieldPtr<String> nameRF( r, "NAME" ) ;
2377  RecordFieldPtr<String> stationRF( r, "STATION" ) ;
2378  RecordFieldPtr<String> mountRF( r, "NAME" ) ;
2379  RecordFieldPtr<String> typeRF( r, "TYPE" ) ;
2380  RecordFieldPtr<Double> dishDiameterRF( r, "DISH_DIAMETER" ) ;
2381  RecordFieldPtr< Vector<Double> > positionRF( r, "POSITION" ) ;
2382  *nameRF = antennaName ;
2383  *mountRF = mount ;
2384  *typeRF = atype ;
2385  *dishDiameterRF = diameter ;
2386  *positionRF = antpos ;
2387 
2388  tr.put( 0 ) ;
2389
2390  //double endSec = mathutil::gettimeofday_sec() ;
2391  //os_ << "end MSWriter::fillAntenna() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2392}
2393 
2394void MSWriter::fillProcessor()
2395{
2396//   double startSec = mathutil::gettimeofday_sec() ;
2397//   os_ << "start MSWriter::fillProcessor() startSec=" << startSec << LogIO::POST ;
2398 
2399  // only add empty 1 row
2400  MSProcessor msProc = mstable_->processor() ;
2401  msProc.addRow( 1, True ) ;
2402
2403//   double endSec = mathutil::gettimeofday_sec() ;
2404//   os_ << "end MSWriter::fillProcessor() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2405}
2406
2407void MSWriter::fillSource()
2408{
2409//   double startSec = mathutil::gettimeofday_sec() ;
2410//   os_ << "start MSWriter::fillSource() startSec=" << startSec << LogIO::POST ;
2411 
2412  // access to MS SOURCE subtable
2413  MSSource msSrc = mstable_->source() ;
2414
2415  // access to MOLECULE subtable
2416  STMolecules stm = table_->molecules() ;
2417
2418  Int srcId = 0 ;
2419  Vector<Double> restFreq ;
2420  Vector<String> molName ;
2421  Vector<String> fMolName ;
2422
2423  // row based
2424  TableRow row( msSrc ) ;
2425  TableRecord &rec = row.record() ;
2426  RecordFieldPtr<Int> srcidRF( rec, "SOURCE_ID" ) ;
2427  RecordFieldPtr<String> nameRF( rec, "NAME" ) ;
2428  RecordFieldPtr< Array<Double> > srcpmRF( rec, "PROPER_MOTION" ) ;
2429  RecordFieldPtr< Array<Double> > srcdirRF( rec, "DIRECTION" ) ;
2430  RecordFieldPtr<Int> numlineRF( rec, "NUM_LINES" ) ;
2431  RecordFieldPtr< Array<Double> > restfreqRF( rec, "REST_FREQUENCY" ) ;
2432  RecordFieldPtr< Array<Double> > sysvelRF( rec, "SYSVEL" ) ;
2433  RecordFieldPtr< Array<String> > transitionRF( rec, "TRANSITION" ) ;
2434  RecordFieldPtr<Double> timeRF( rec, "TIME" ) ;
2435  RecordFieldPtr<Double> intervalRF( rec, "INTERVAL" ) ;
2436  RecordFieldPtr<Int> spwidRF( rec, "SPECTRAL_WINDOW_ID" ) ;
2437
2438  //
2439  // ITERATION: SRCNAME
2440  //
2441  TableIterator iter0( table_->table(), "SRCNAME" ) ;
2442  while( !iter0.pastEnd() ) {
2443    //Table t0( iter0.table() ) ;
2444    Table t0 =  iter0.table()  ;
2445
2446    // get necessary information
2447    ROScalarColumn<String> srcNameCol( t0, "SRCNAME" ) ;
2448    String srcName = srcNameCol( 0 ) ;
2449    ROArrayColumn<Double> sharedDArrRCol( t0, "SRCPROPERMOTION" ) ;
2450    Vector<Double> srcPM = sharedDArrRCol( 0 ) ;
2451    sharedDArrRCol.attach( t0, "SRCDIRECTION" ) ;
2452    Vector<Double> srcDir = sharedDArrRCol( 0 ) ;
2453    ROScalarColumn<Double> srcVelCol( t0, "SRCVELOCITY" ) ;
2454    Double srcVel = srcVelCol( 0 ) ;
2455    srcRec_.define( srcName, srcId ) ;
2456
2457    // NAME
2458    *nameRF = srcName ;
2459
2460    // SOURCE_ID
2461    *srcidRF = srcId ;
2462
2463    // PROPER_MOTION
2464    *srcpmRF = srcPM ;
2465   
2466    // DIRECTION
2467    *srcdirRF = srcDir ;
2468
2469    //
2470    // ITERATION: MOLECULE_ID
2471    //
2472    TableIterator iter1( t0, "MOLECULE_ID" ) ;
2473    while( !iter1.pastEnd() ) {
2474      //Table t1( iter1.table() ) ;
2475      Table t1 = iter1.table() ;
2476
2477      // get necessary information
2478      ROScalarColumn<uInt> molIdCol( t1, "MOLECULE_ID" ) ;
2479      uInt molId = molIdCol( 0 ) ;
2480      stm.getEntry( restFreq, molName, fMolName, molId ) ;
2481
2482      uInt numFreq = restFreq.size() ;
2483     
2484      // NUM_LINES
2485      *numlineRF = numFreq ;
2486
2487      // REST_FREQUENCY
2488      *restfreqRF = restFreq ;
2489
2490      // TRANSITION
2491      //*transitionRF = fMolName ;
2492      Vector<String> transition ;
2493      if ( fMolName.size() != 0 ) {
2494        transition = fMolName ;
2495      }
2496      else if ( molName.size() != 0 ) {
2497        transition = molName ;
2498      }
2499      else {
2500        transition.resize( numFreq ) ;
2501        transition = "" ;
2502      }
2503      *transitionRF = transition ;
2504
2505      // SYSVEL
2506      Vector<Double> sysvelArr( numFreq, srcVel ) ;
2507      *sysvelRF = sysvelArr ;
2508
2509      //
2510      // ITERATION: IFNO
2511      //
2512      TableIterator iter2( t1, "IFNO" ) ;
2513      while( !iter2.pastEnd() ) {
2514        //Table t2( iter2.table() ) ;
2515        Table t2 = iter2.table() ;
2516        uInt nrow = msSrc.nrow() ;
2517
2518        // get necessary information
2519        ROScalarColumn<uInt> ifNoCol( t2, "IFNO" ) ;
2520        uInt ifno = ifNoCol( 0 ) ; // IFNO = SPECTRAL_WINDOW_ID
2521        Double midTime ;
2522        Double interval ;
2523        getValidTimeRange( midTime, interval, t2 ) ;
2524
2525        // fill SPECTRAL_WINDOW_ID
2526        *spwidRF = ifno ;
2527
2528        // fill TIME, INTERVAL
2529        *timeRF = midTime ;
2530        *intervalRF = interval ;
2531
2532        // add row
2533        msSrc.addRow( 1, True ) ;
2534        row.put( nrow ) ;
2535
2536        iter2.next() ;
2537      }
2538
2539      iter1.next() ;
2540    }
2541
2542    // increment srcId if SRCNAME changed
2543    srcId++ ;
2544
2545    iter0.next() ;
2546  }
2547
2548//   double endSec = mathutil::gettimeofday_sec() ;
2549//   os_ << "end MSWriter::fillSource() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2550}
2551
2552void MSWriter::fillWeather()
2553{
2554//   double startSec = mathutil::gettimeofday_sec() ;
2555//   os_ << "start MSWriter::fillWeather() startSec=" << startSec << LogIO::POST ;
2556
2557  // access to MS WEATHER subtable
2558  MSWeather msw = mstable_->weather() ;
2559
2560  // access to WEATHER subtable
2561  Table stw = table_->weather().table() ;
2562  uInt nrow = stw.nrow() ;
2563
2564  if ( nrow == 0 )
2565    return ;
2566
2567  msw.addRow( nrow, True ) ;
2568  MSWeatherColumns mswCols( msw ) ;
2569
2570  // ANTENNA_ID is always 0
2571  Vector<Int> antIdArr( nrow, 0 ) ;
2572  mswCols.antennaId().putColumn( antIdArr ) ;
2573
2574  // fill weather status
2575  ROScalarColumn<Float> sharedFloatCol( stw, "TEMPERATURE" ) ;
2576  mswCols.temperature().putColumn( sharedFloatCol ) ;
2577  sharedFloatCol.attach( stw, "PRESSURE" ) ;
2578  mswCols.pressure().putColumn( sharedFloatCol ) ;
2579  sharedFloatCol.attach( stw, "HUMIDITY" ) ;
2580  mswCols.relHumidity().putColumn( sharedFloatCol ) ;
2581  sharedFloatCol.attach( stw, "WINDSPEED" ) ;
2582  mswCols.windSpeed().putColumn( sharedFloatCol ) ;
2583  sharedFloatCol.attach( stw, "WINDAZ" ) ;
2584  mswCols.windDirection().putColumn( sharedFloatCol ) ;
2585
2586  // fill TIME and INTERVAL
2587  Double midTime ;
2588  Double interval ;
2589  Vector<Double> intervalArr( nrow, 0.0 ) ;
2590  TableIterator iter( table_->table(), "WEATHER_ID" ) ;
2591  while( !iter.pastEnd() ) {
2592    //Table tab( iter.table() ) ;
2593    Table tab = iter.table() ;
2594
2595    ROScalarColumn<uInt> widCol( tab, "WEATHER_ID" ) ;
2596    uInt wid = widCol( 0 ) ;
2597
2598    getValidTimeRange( midTime, interval, tab ) ;
2599    mswCols.time().put( wid, midTime ) ;
2600    intervalArr[wid] = interval ;
2601
2602    iter.next() ;
2603  }
2604  mswCols.interval().putColumn( intervalArr ) ;
2605
2606//   double endSec = mathutil::gettimeofday_sec() ;
2607//   os_ << "end MSWriter::fillWeather() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2608}
2609
2610void MSWriter::fillSysCal()
2611{
2612  Table mssc = mstable_->sysCal() ;
2613
2614  {
2615    static const char *cols[] = {
2616      "BEAMNO", "IFNO", "TIME", "POLNO",
2617      NULL
2618    };
2619    static const TypeManagerImpl<uInt> tmUInt;
2620    static const TypeManagerImpl<Double> tmDouble;
2621    static const TypeManager *const tms[] = {
2622      &tmUInt, &tmUInt, &tmDouble, &tmUInt, NULL
2623    };
2624    //double t0 = mathutil::gettimeofday_sec() ;
2625    MSSysCalVisitor myVisitor(table_->table(),mssc);
2626    //double t1 = mathutil::gettimeofday_sec() ;
2627    //cout << "MSWriterVisitor(): elapsed time " << t1-t0 << " sec" << endl ;
2628    traverseTable(table_->table(), cols, tms, &myVisitor);
2629    //double t3 = mathutil::gettimeofday_sec() ;
2630    //cout << "traverseTable(): elapsed time " << t3-t2 << " sec" << endl ;
2631  }
2632 
2633}
2634
2635void MSWriter::getValidTimeRange( Double &me, Double &interval, Table &tab )
2636{
2637//   double startSec = mathutil::gettimeofday_sec() ;
2638//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2639
2640  // sort table
2641  //Table stab = tab.sort( "TIME" ) ;
2642
2643  ROScalarColumn<Double> timeCol( tab, "TIME" ) ;
2644  Vector<Double> timeArr = timeCol.getColumn() ;
2645  Double minTime ;
2646  Double maxTime ;
2647  minMax( minTime, maxTime, timeArr ) ;
2648  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2649  // unit for TIME
2650  // Scantable: "d"
2651  // MS: "s"
2652  me = midTime ;
2653  interval = ( maxTime - minTime ) * 86400.0 ;
2654
2655//   double endSec = mathutil::gettimeofday_sec() ;
2656//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2657}
2658
2659void MSWriter::getValidTimeRange( Double &me, Double &interval, Vector<Double> &atime, Vector<Double> &ainterval )
2660{
2661//   double startSec = mathutil::gettimeofday_sec() ;
2662//   os_ << "start MSWriter::getVaridTimeRange() startSec=" << startSec << LogIO::POST ;
2663
2664  // sort table
2665  //Table stab = tab.sort( "TIME" ) ;
2666
2667  Double minTime ;
2668  Double maxTime ;
2669  minMax( minTime, maxTime, atime ) ;
2670  Double midTime = 0.5 * ( minTime + maxTime ) * 86400.0 ;
2671  // unit for TIME
2672  // Scantable: "d"
2673  // MS: "s"
2674  me = midTime ;
2675  interval = ( maxTime - minTime ) * 86400.0 + mean( ainterval ) ;
2676
2677//   double endSec = mathutil::gettimeofday_sec() ;
2678//   os_ << "end MSWriter::getValidTimeRange() endSec=" << endSec << " (" << endSec-startSec << "sec)" << LogIO::POST ;
2679}
2680
2681}
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