| 1 | from asap.parameters import rcParams
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| 2 | from asap.selector import selector
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| 3 | from asap.scantable import scantable
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| 4 | from asap.logging import asaplog, asaplog_post_dec
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| 5 | import matplotlib.axes
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| 6 | from matplotlib.font_manager import FontProperties
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| 7 | from matplotlib.text import Text
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| 8 |
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| 9 | import re
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| 10 |
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| 11 | class asapplotter:
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| 12 | """
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| 13 | The ASAP plotter.
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| 14 | By default the plotter is set up to plot polarisations
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| 15 | 'colour stacked' and scantables across panels.
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| 16 |
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| 17 | .. note::
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| 18 |
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| 19 | Currenly it only plots 'spectra' not Tsys or
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| 20 | other variables.
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| 21 |
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| 22 | """
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| 23 | def __init__(self, visible=None , **kwargs):
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| 24 | self._visible = rcParams['plotter.gui']
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| 25 | if visible is not None:
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| 26 | self._visible = visible
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| 27 | self._plotter = self._newplotter(**kwargs)
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| 28 | # additional tool bar
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| 29 | self._plotter.figmgr.casabar=self._newcasabar()
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| 30 |
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| 31 | self._panelling = None
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| 32 | self._stacking = None
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| 33 | self.set_panelling()
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| 34 | self.set_stacking()
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| 35 | self._rows = None
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| 36 | self._cols = None
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| 37 | self._autoplot = False
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| 38 | self._minmaxx = None
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| 39 | self._minmaxy = None
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| 40 | self._datamask = None
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| 41 | self._data = None
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| 42 | self._lmap = None
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| 43 | self._title = None
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| 44 | self._ordinate = None
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| 45 | self._abcissa = None
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| 46 | self._abcunit = None
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| 47 | self._usermask = []
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| 48 | self._maskselection = None
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| 49 | self._selection = selector()
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| 50 | self._hist = rcParams['plotter.histogram']
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| 51 | self._fp = FontProperties()
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| 52 | self._margins = self.set_margin(refresh=False)
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| 53 | self._offset = None
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| 54 | self._startrow = 0
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| 55 | self._ipanel = -1
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| 56 | self._panelrows = []
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| 57 | self._headstring = None
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| 58 | self._headsize = None
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| 59 |
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| 60 | def _translate(self, instr):
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| 61 | keys = "s b i p t r".split()
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| 62 | if isinstance(instr, str):
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| 63 | for key in keys:
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| 64 | if instr.lower().startswith(key):
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| 65 | return key
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| 66 | return None
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| 67 |
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| 68 | def _newplotter(self, **kwargs):
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| 69 | backend=matplotlib.get_backend()
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| 70 | if not self._visible:
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| 71 | from asap.asaplot import asaplot
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| 72 | elif backend == 'TkAgg':
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| 73 | from asap.asaplotgui import asaplotgui as asaplot
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| 74 | elif backend == 'Qt4Agg':
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| 75 | from asap.asaplotgui_qt4 import asaplotgui as asaplot
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| 76 | elif backend == 'GTkAgg':
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| 77 | from asap.asaplotgui_gtk import asaplotgui as asaplot
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| 78 | else:
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| 79 | from asap.asaplot import asaplot
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| 80 | return asaplot(**kwargs)
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| 81 |
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| 82 | def _newcasabar(self):
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| 83 | backend=matplotlib.get_backend()
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| 84 | if self._visible and backend == "TkAgg":
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| 85 | from asap.casatoolbar import CustomToolbarTkAgg
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| 86 | return CustomToolbarTkAgg(self)
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| 87 | #from asap.casatoolbar import CustomFlagToolbarTkAgg
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| 88 | #return CustomFlagToolbarTkAgg(self)
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| 89 | return None
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| 90 |
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| 91 | @asaplog_post_dec
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| 92 | def plot(self, scan=None):
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| 93 | """
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| 94 | Plot a scantable.
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| 95 | Parameters:
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| 96 | scan: a scantable
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| 97 | Note:
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| 98 | If a scantable was specified in a previous call
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| 99 | to plot, no argument has to be given to 'replot'
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| 100 | NO checking is done that the abcissas of the scantable
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| 101 | are consistent e.g. all 'channel' or all 'velocity' etc.
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| 102 | """
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| 103 | self._startrow = 0
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| 104 | self._ipanel = -1
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| 105 | if self._plotter.is_dead:
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| 106 | if hasattr(self._plotter.figmgr,'casabar'):
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| 107 | del self._plotter.figmgr.casabar
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| 108 | self._plotter = self._newplotter()
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| 109 | self._plotter.figmgr.casabar=self._newcasabar()
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| 110 | if self._plotter.figmgr.casabar:
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| 111 | self._plotter.figmgr.casabar.set_pagecounter(1)
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| 112 | self._panelrows = []
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| 113 | self._plotter.hold()
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| 114 | #self._plotter.clear()
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| 115 | if not self._data and not scan:
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| 116 | msg = "Input is not a scantable"
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| 117 | raise TypeError(msg)
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| 118 | if scan:
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| 119 | self.set_data(scan, refresh=False)
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| 120 | self._plot(self._data)
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| 121 | if self._minmaxy is not None:
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| 122 | self._plotter.set_limits(ylim=self._minmaxy)
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| 123 | if self._plotter.figmgr.casabar: self._plotter.figmgr.casabar.enable_button()
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| 124 | self._plotter.release()
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| 125 | self._plotter.tidy()
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| 126 | self._plotter.show(hardrefresh=False)
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| 127 | return
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| 128 |
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| 129 | def gca(self):
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| 130 | return self._plotter.figure.gca()
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| 131 |
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| 132 | def refresh(self):
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| 133 | """Do a soft refresh"""
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| 134 | self._plotter.figure.show()
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| 135 |
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| 136 | def create_mask(self, nwin=1, panel=0, color=None):
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| 137 | """
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| 138 | Interactively define a mask. It retruns a mask that is equivalent to
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| 139 | the one created manually with scantable.create_mask.
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| 140 | Parameters:
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| 141 | nwin: The number of mask windows to create interactively
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| 142 | default is 1.
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| 143 | panel: Which panel to use for mask selection. This is useful
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| 144 | if different IFs are spread over panels (default 0)
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| 145 | """
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| 146 | if self._data is None:
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| 147 | return []
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| 148 | outmask = []
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| 149 | self._plotter.subplot(panel)
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| 150 | xmin, xmax = self._plotter.axes.get_xlim()
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| 151 | marg = 0.05*(xmax-xmin)
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| 152 | self._plotter.axes.set_xlim(xmin-marg, xmax+marg)
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| 153 | self.refresh()
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| 154 |
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| 155 | def cleanup(lines=False, texts=False, refresh=False):
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| 156 | if lines:
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| 157 | del self._plotter.axes.lines[-1]
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| 158 | if texts:
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| 159 | del self._plotter.axes.texts[-1]
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| 160 | if refresh:
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| 161 | self.refresh()
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| 162 |
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| 163 | for w in xrange(nwin):
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| 164 | wpos = []
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| 165 | self.text(0.05,1.0, "Add start boundary",
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| 166 | coords="relative", fontsize=10)
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| 167 | point = self._plotter.get_point()
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| 168 | cleanup(texts=True)
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| 169 | if point is None:
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| 170 | continue
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| 171 | wpos.append(point[0])
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| 172 | self.axvline(wpos[0], color=color)
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| 173 | self.text(0.05,1.0, "Add end boundary", coords="relative", fontsize=10)
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| 174 | point = self._plotter.get_point()
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| 175 | cleanup(texts=True, lines=True)
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| 176 | if point is None:
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| 177 | self.refresh()
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| 178 | continue
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| 179 | wpos.append(point[0])
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| 180 | self.axvspan(wpos[0], wpos[1], alpha=0.1,
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| 181 | edgecolor=color, facecolor=color)
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| 182 | ymin, ymax = self._plotter.axes.get_ylim()
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| 183 | outmask.append(wpos)
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| 184 |
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| 185 | self._plotter.axes.set_xlim(xmin, xmax)
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| 186 | self.refresh()
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| 187 | if len(outmask) > 0:
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| 188 | return self._data.create_mask(*outmask)
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| 189 | return []
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| 190 |
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| 191 | # forwards to matplotlib axes
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| 192 | def text(self, *args, **kwargs):
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| 193 | if kwargs.has_key("interactive"):
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| 194 | if kwargs.pop("interactive"):
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| 195 | pos = self._plotter.get_point()
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| 196 | args = tuple(pos)+args
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| 197 | self._axes_callback("text", *args, **kwargs)
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| 198 |
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| 199 | text.__doc__ = matplotlib.axes.Axes.text.__doc__
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| 200 |
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| 201 | def arrow(self, *args, **kwargs):
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| 202 | if kwargs.has_key("interactive"):
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| 203 | if kwargs.pop("interactive"):
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| 204 | pos = self._plotter.get_region()
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| 205 | dpos = (pos[0][0], pos[0][1],
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| 206 | pos[1][0]-pos[0][0],
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| 207 | pos[1][1] - pos[0][1])
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| 208 | args = dpos + args
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| 209 | self._axes_callback("arrow", *args, **kwargs)
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| 210 |
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| 211 | arrow.__doc__ = matplotlib.axes.Axes.arrow.__doc__
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| 212 |
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| 213 | def annotate(self, text, xy=None, xytext=None, **kwargs):
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| 214 | if kwargs.has_key("interactive"):
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| 215 | if kwargs.pop("interactive"):
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| 216 | xy = self._plotter.get_point()
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| 217 | xytext = self._plotter.get_point()
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| 218 | if not kwargs.has_key("arrowprops"):
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| 219 | kwargs["arrowprops"] = dict(arrowstyle="->")
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| 220 | self._axes_callback("annotate", text, xy, xytext, **kwargs)
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| 221 |
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| 222 | annotate.__doc__ = matplotlib.axes.Axes.annotate.__doc__
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| 223 |
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| 224 | def axvline(self, *args, **kwargs):
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| 225 | if kwargs.has_key("interactive"):
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| 226 | if kwargs.pop("interactive"):
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| 227 | pos = self._plotter.get_point()
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| 228 | args = (pos[0],)+args
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| 229 | self._axes_callback("axvline", *args, **kwargs)
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| 230 |
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| 231 | axvline.__doc__ = matplotlib.axes.Axes.axvline.__doc__
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| 232 |
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| 233 | def axhline(self, *args, **kwargs):
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| 234 | if kwargs.has_key("interactive"):
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| 235 | if kwargs.pop("interactive"):
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| 236 | pos = self._plotter.get_point()
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| 237 | args = (pos[1],)+args
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| 238 | self._axes_callback("axhline", *args, **kwargs)
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| 239 |
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| 240 | axhline.__doc__ = matplotlib.axes.Axes.axhline.__doc__
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| 241 |
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| 242 | def axvspan(self, *args, **kwargs):
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| 243 | if kwargs.has_key("interactive"):
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| 244 | if kwargs.pop("interactive"):
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| 245 | pos = self._plotter.get_region()
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| 246 | dpos = (pos[0][0], pos[1][0])
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| 247 | args = dpos + args
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| 248 | self._axes_callback("axvspan", *args, **kwargs)
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| 249 | # hack to preventy mpl from redrawing the patch
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| 250 | # it seem to convert the patch into lines on every draw.
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| 251 | # This doesn't happen in a test script???
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| 252 | #del self._plotter.axes.patches[-1]
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| 253 |
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| 254 | axvspan.__doc__ = matplotlib.axes.Axes.axvspan.__doc__
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| 255 |
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| 256 | def axhspan(self, *args, **kwargs):
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| 257 | if kwargs.has_key("interactive"):
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| 258 | if kwargs.pop("interactive"):
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| 259 | pos = self._plotter.get_region()
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| 260 | dpos = (pos[0][1], pos[1][1])
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| 261 | args = dpos + args
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| 262 | self._axes_callback("axhspan", *args, **kwargs)
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| 263 | # hack to preventy mpl from redrawing the patch
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| 264 | # it seem to convert the patch into lines on every draw.
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| 265 | # This doesn't happen in a test script???
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| 266 | #del self._plotter.axes.patches[-1]
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| 267 |
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| 268 | axhspan.__doc__ = matplotlib.axes.Axes.axhspan.__doc__
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| 269 |
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| 270 | def _axes_callback(self, axesfunc, *args, **kwargs):
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| 271 | panel = 0
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| 272 | if kwargs.has_key("panel"):
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| 273 | panel = kwargs.pop("panel")
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| 274 | coords = None
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| 275 | if kwargs.has_key("coords"):
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| 276 | coords = kwargs.pop("coords")
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| 277 | if coords.lower() == 'world':
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| 278 | kwargs["transform"] = self._plotter.axes.transData
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| 279 | elif coords.lower() == 'relative':
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| 280 | kwargs["transform"] = self._plotter.axes.transAxes
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| 281 | self._plotter.subplot(panel)
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| 282 | self._plotter.axes.set_autoscale_on(False)
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| 283 | getattr(self._plotter.axes, axesfunc)(*args, **kwargs)
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| 284 | self._plotter.show(False)
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| 285 | self._plotter.axes.set_autoscale_on(True)
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| 286 | # end matplotlib.axes fowarding functions
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| 287 |
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| 288 | @asaplog_post_dec
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| 289 | def set_data(self, scan, refresh=True):
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| 290 | """
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| 291 | Set a scantable to plot.
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| 292 | Parameters:
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| 293 | scan: a scantable
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| 294 | refresh: True (default) or False. If True, the plot is
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| 295 | replotted based on the new parameter setting(s).
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| 296 | Otherwise,the parameter(s) are set without replotting.
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| 297 | Note:
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| 298 | The user specified masks and data selections will be reset
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| 299 | if a new scantable is set. This method should be called before
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| 300 | setting data selections (set_selection) and/or masks (set_mask).
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| 301 | """
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| 302 | from asap import scantable
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| 303 | if isinstance(scan, scantable):
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| 304 | if self._data is not None:
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| 305 | if scan != self._data:
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| 306 | self._data = scan
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| 307 | # reset
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| 308 | self._reset()
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| 309 | msg = "A new scantable is set to the plotter. "\
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| 310 | "The masks and data selections are reset."
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| 311 | asaplog.push( msg )
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| 312 | else:
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| 313 | self._data = scan
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| 314 | self._reset()
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| 315 | else:
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| 316 | msg = "Input is not a scantable"
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| 317 | raise TypeError(msg)
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| 318 |
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| 319 | # ranges become invalid when unit changes
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| 320 | if self._abcunit and self._abcunit != self._data.get_unit():
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| 321 | self._minmaxx = None
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| 322 | self._minmaxy = None
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| 323 | self._abcunit = self._data.get_unit()
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| 324 | self._datamask = None
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| 325 | if refresh: self.plot()
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| 326 |
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| 327 | @asaplog_post_dec
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| 328 | def set_mode(self, stacking=None, panelling=None, refresh=True):
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| 329 | """
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| 330 | Set the plots look and feel, i.e. what you want to see on the plot.
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| 331 | Parameters:
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| 332 | stacking: tell the plotter which variable to plot
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| 333 | as line colour overlays (default 'pol')
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| 334 | panelling: tell the plotter which variable to plot
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| 335 | across multiple panels (default 'scan'
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| 336 | refresh: True (default) or False. If True, the plot is
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| 337 | replotted based on the new parameter setting(s).
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| 338 | Otherwise,the parameter(s) are set without replotting.
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| 339 | Note:
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| 340 | Valid modes are:
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| 341 | 'beam' 'Beam' 'b': Beams
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| 342 | 'if' 'IF' 'i': IFs
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| 343 | 'pol' 'Pol' 'p': Polarisations
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| 344 | 'scan' 'Scan' 's': Scans
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| 345 | 'time' 'Time' 't': Times
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| 346 | 'row' 'Row' 'r': Rows
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| 347 | When either 'stacking' or 'panelling' is set to 'row',
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| 348 | the other parameter setting is ignored.
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| 349 | """
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| 350 | msg = "Invalid mode"
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| 351 | if not self.set_panelling(panelling) or \
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| 352 | not self.set_stacking(stacking):
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| 353 | raise TypeError(msg)
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| 354 | #if self._panelling == 'r':
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| 355 | # self._stacking = '_r'
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| 356 | #if self._stacking == 'r':
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| 357 | # self._panelling = '_r'
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| 358 | if refresh and self._data: self.plot(self._data)
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| 359 | return
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| 360 |
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| 361 | def set_panelling(self, what=None):
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| 362 | """Set the 'panelling' mode i.e. which type of spectra should be
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| 363 | spread across different panels.
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| 364 | """
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| 365 |
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| 366 | mode = what
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| 367 | if mode is None:
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| 368 | mode = rcParams['plotter.panelling']
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| 369 | md = self._translate(mode)
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| 370 | if md:
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| 371 | self._panelling = md
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| 372 | self._title = None
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| 373 | #if md == 'r':
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| 374 | # self._stacking = '_r'
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| 375 | # you need to reset counters for multi page plotting
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| 376 | self._reset_counters()
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| 377 | return True
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| 378 | return False
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| 379 |
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| 380 | def set_layout(self,rows=None,cols=None,refresh=True):
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| 381 | """
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| 382 | Set the multi-panel layout, i.e. how many rows and columns plots
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| 383 | are visible.
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| 384 | Parameters:
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| 385 | rows: The number of rows of plots
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| 386 | cols: The number of columns of plots
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| 387 | refresh: True (default) or False. If True, the plot is
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| 388 | replotted based on the new parameter setting(s).
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| 389 | Otherwise,the parameter(s) are set without replotting.
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| 390 | Note:
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| 391 | If no argument is given, the potter reverts to its auto-plot
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| 392 | behaviour.
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| 393 | """
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| 394 | self._rows = rows
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| 395 | self._cols = cols
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|---|
| 396 | if refresh and self._data: self.plot(self._data)
|
|---|
| 397 | return
|
|---|
| 398 |
|
|---|
| 399 | def set_stacking(self, what=None):
|
|---|
| 400 | """Set the 'stacking' mode i.e. which type of spectra should be
|
|---|
| 401 | overlayed.
|
|---|
| 402 | """
|
|---|
| 403 | mode = what
|
|---|
| 404 | if mode is None:
|
|---|
| 405 | mode = rcParams['plotter.stacking']
|
|---|
| 406 | md = self._translate(mode)
|
|---|
| 407 | if md:
|
|---|
| 408 | self._stacking = md
|
|---|
| 409 | self._lmap = None
|
|---|
| 410 | #if md == 'r':
|
|---|
| 411 | # self._panelling = '_r'
|
|---|
| 412 | # you need to reset counters for multi page plotting
|
|---|
| 413 | self._reset_counters()
|
|---|
| 414 | return True
|
|---|
| 415 | return False
|
|---|
| 416 |
|
|---|
| 417 | def _reset_counters(self):
|
|---|
| 418 | self._startrow = 0
|
|---|
| 419 | self._ipanel = -1
|
|---|
| 420 | self._panelrows = []
|
|---|
| 421 |
|
|---|
| 422 | def set_range(self,xstart=None,xend=None,ystart=None,yend=None,refresh=True, offset=None):
|
|---|
| 423 | """
|
|---|
| 424 | Set the range of interest on the abcissa of the plot
|
|---|
| 425 | Parameters:
|
|---|
| 426 | [x,y]start,[x,y]end: The start and end points of the 'zoom' window
|
|---|
| 427 | refresh: True (default) or False. If True, the plot is
|
|---|
| 428 | replotted based on the new parameter setting(s).
|
|---|
| 429 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 430 | offset: shift the abcissa by the given amount. The abcissa label will
|
|---|
| 431 | have '(relative)' appended to it.
|
|---|
| 432 | Note:
|
|---|
| 433 | These become non-sensical when the unit changes.
|
|---|
| 434 | use plotter.set_range() without parameters to reset
|
|---|
| 435 |
|
|---|
| 436 | """
|
|---|
| 437 | self._offset = offset
|
|---|
| 438 | if xstart is None and xend is None:
|
|---|
| 439 | self._minmaxx = None
|
|---|
| 440 | else:
|
|---|
| 441 | self._minmaxx = [xstart,xend]
|
|---|
| 442 | if ystart is None and yend is None:
|
|---|
| 443 | self._minmaxy = None
|
|---|
| 444 | else:
|
|---|
| 445 | self._minmaxy = [ystart,yend]
|
|---|
| 446 | if refresh and self._data: self.plot(self._data)
|
|---|
| 447 | return
|
|---|
| 448 |
|
|---|
| 449 | def set_legend(self, mp=None, fontsize = None, mode = 0, refresh=True):
|
|---|
| 450 | """
|
|---|
| 451 | Specify a mapping for the legend instead of using the default
|
|---|
| 452 | indices:
|
|---|
| 453 | Parameters:
|
|---|
| 454 | mp: a list of 'strings'. This should have the same length
|
|---|
| 455 | as the number of elements on the legend and then maps
|
|---|
| 456 | to the indeces in order. It is possible to uses latex
|
|---|
| 457 | math expression. These have to be enclosed in r'',
|
|---|
| 458 | e.g. r'$x^{2}$'
|
|---|
| 459 | fontsize: The font size of the label (default None)
|
|---|
| 460 | mode: where to display the legend
|
|---|
| 461 | Any other value for loc else disables the legend:
|
|---|
| 462 | 0: auto
|
|---|
| 463 | 1: upper right
|
|---|
| 464 | 2: upper left
|
|---|
| 465 | 3: lower left
|
|---|
| 466 | 4: lower right
|
|---|
| 467 | 5: right
|
|---|
| 468 | 6: center left
|
|---|
| 469 | 7: center right
|
|---|
| 470 | 8: lower center
|
|---|
| 471 | 9: upper center
|
|---|
| 472 | 10: center
|
|---|
| 473 | refresh: True (default) or False. If True, the plot is
|
|---|
| 474 | replotted based on the new parameter setting(s).
|
|---|
| 475 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 476 |
|
|---|
| 477 | Example:
|
|---|
| 478 | If the data has two IFs/rest frequencies with index 0 and 1
|
|---|
| 479 | for CO and SiO:
|
|---|
| 480 | plotter.set_stacking('i')
|
|---|
| 481 | plotter.set_legend(['CO','SiO'])
|
|---|
| 482 | plotter.plot()
|
|---|
| 483 | plotter.set_legend([r'$^{12}CO$', r'SiO'])
|
|---|
| 484 | """
|
|---|
| 485 | self._lmap = mp
|
|---|
| 486 | self._plotter.legend(mode)
|
|---|
| 487 | if isinstance(fontsize, int):
|
|---|
| 488 | from matplotlib import rc as rcp
|
|---|
| 489 | rcp('legend', fontsize=fontsize)
|
|---|
| 490 | if refresh and self._data: self.plot(self._data)
|
|---|
| 491 | return
|
|---|
| 492 |
|
|---|
| 493 | def set_title(self, title=None, fontsize=None, refresh=True):
|
|---|
| 494 | """
|
|---|
| 495 | Set the title of the plot. If multiple panels are plotted,
|
|---|
| 496 | multiple titles have to be specified.
|
|---|
| 497 | Parameters:
|
|---|
| 498 | refresh: True (default) or False. If True, the plot is
|
|---|
| 499 | replotted based on the new parameter setting(s).
|
|---|
| 500 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 501 | Example:
|
|---|
| 502 | # two panels are visible on the plotter
|
|---|
| 503 | plotter.set_title(["First Panel","Second Panel"])
|
|---|
| 504 | """
|
|---|
| 505 | self._title = title
|
|---|
| 506 | if isinstance(fontsize, int):
|
|---|
| 507 | from matplotlib import rc as rcp
|
|---|
| 508 | rcp('axes', titlesize=fontsize)
|
|---|
| 509 | if refresh and self._data: self.plot(self._data)
|
|---|
| 510 | return
|
|---|
| 511 |
|
|---|
| 512 | def set_ordinate(self, ordinate=None, fontsize=None, refresh=True):
|
|---|
| 513 | """
|
|---|
| 514 | Set the y-axis label of the plot. If multiple panels are plotted,
|
|---|
| 515 | multiple labels have to be specified.
|
|---|
| 516 | Parameters:
|
|---|
| 517 | ordinate: a list of ordinate labels. None (default) let
|
|---|
| 518 | data determine the labels
|
|---|
| 519 | refresh: True (default) or False. If True, the plot is
|
|---|
| 520 | replotted based on the new parameter setting(s).
|
|---|
| 521 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 522 | Example:
|
|---|
| 523 | # two panels are visible on the plotter
|
|---|
| 524 | plotter.set_ordinate(["First Y-Axis","Second Y-Axis"])
|
|---|
| 525 | """
|
|---|
| 526 | self._ordinate = ordinate
|
|---|
| 527 | if isinstance(fontsize, int):
|
|---|
| 528 | from matplotlib import rc as rcp
|
|---|
| 529 | rcp('axes', labelsize=fontsize)
|
|---|
| 530 | rcp('ytick', labelsize=fontsize)
|
|---|
| 531 | if refresh and self._data: self.plot(self._data)
|
|---|
| 532 | return
|
|---|
| 533 |
|
|---|
| 534 | def set_abcissa(self, abcissa=None, fontsize=None, refresh=True):
|
|---|
| 535 | """
|
|---|
| 536 | Set the x-axis label of the plot. If multiple panels are plotted,
|
|---|
| 537 | multiple labels have to be specified.
|
|---|
| 538 | Parameters:
|
|---|
| 539 | abcissa: a list of abcissa labels. None (default) let
|
|---|
| 540 | data determine the labels
|
|---|
| 541 | refresh: True (default) or False. If True, the plot is
|
|---|
| 542 | replotted based on the new parameter setting(s).
|
|---|
| 543 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 544 | Example:
|
|---|
| 545 | # two panels are visible on the plotter
|
|---|
| 546 | plotter.set_ordinate(["First X-Axis","Second X-Axis"])
|
|---|
| 547 | """
|
|---|
| 548 | self._abcissa = abcissa
|
|---|
| 549 | if isinstance(fontsize, int):
|
|---|
| 550 | from matplotlib import rc as rcp
|
|---|
| 551 | rcp('axes', labelsize=fontsize)
|
|---|
| 552 | rcp('xtick', labelsize=fontsize)
|
|---|
| 553 | if refresh and self._data: self.plot(self._data)
|
|---|
| 554 | return
|
|---|
| 555 |
|
|---|
| 556 | def set_colors(self, colmap, refresh=True):
|
|---|
| 557 | """
|
|---|
| 558 | Set the colours to be used. The plotter will cycle through
|
|---|
| 559 | these colours when lines are overlaid (stacking mode).
|
|---|
| 560 | Parameters:
|
|---|
| 561 | colmap: a list of colour names
|
|---|
| 562 | refresh: True (default) or False. If True, the plot is
|
|---|
| 563 | replotted based on the new parameter setting(s).
|
|---|
| 564 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 565 | Example:
|
|---|
| 566 | plotter.set_colors("red green blue")
|
|---|
| 567 | # If for example four lines are overlaid e.g I Q U V
|
|---|
| 568 | # 'I' will be 'red', 'Q' will be 'green', U will be 'blue'
|
|---|
| 569 | # and 'V' will be 'red' again.
|
|---|
| 570 | """
|
|---|
| 571 | if isinstance(colmap,str):
|
|---|
| 572 | colmap = colmap.split()
|
|---|
| 573 | self._plotter.palette(0, colormap=colmap)
|
|---|
| 574 | if refresh and self._data: self.plot(self._data)
|
|---|
| 575 |
|
|---|
| 576 | # alias for english speakers
|
|---|
| 577 | set_colours = set_colors
|
|---|
| 578 |
|
|---|
| 579 | def set_histogram(self, hist=True, linewidth=None, refresh=True):
|
|---|
| 580 | """
|
|---|
| 581 | Enable/Disable histogram-like plotting.
|
|---|
| 582 | Parameters:
|
|---|
| 583 | hist: True (default) or False. The fisrt default
|
|---|
| 584 | is taken from the .asaprc setting
|
|---|
| 585 | plotter.histogram
|
|---|
| 586 | refresh: True (default) or False. If True, the plot is
|
|---|
| 587 | replotted based on the new parameter setting(s).
|
|---|
| 588 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 589 | """
|
|---|
| 590 | self._hist = hist
|
|---|
| 591 | if isinstance(linewidth, float) or isinstance(linewidth, int):
|
|---|
| 592 | from matplotlib import rc as rcp
|
|---|
| 593 | rcp('lines', linewidth=linewidth)
|
|---|
| 594 | if refresh and self._data: self.plot(self._data)
|
|---|
| 595 |
|
|---|
| 596 | def set_linestyles(self, linestyles=None, linewidth=None, refresh=True):
|
|---|
| 597 | """
|
|---|
| 598 | Set the linestyles to be used. The plotter will cycle through
|
|---|
| 599 | these linestyles when lines are overlaid (stacking mode) AND
|
|---|
| 600 | only one color has been set.
|
|---|
| 601 | Parameters:
|
|---|
| 602 | linestyles: a list of linestyles to use.
|
|---|
| 603 | 'line', 'dashed', 'dotted', 'dashdot',
|
|---|
| 604 | 'dashdotdot' and 'dashdashdot' are
|
|---|
| 605 | possible
|
|---|
| 606 | refresh: True (default) or False. If True, the plot is
|
|---|
| 607 | replotted based on the new parameter setting(s).
|
|---|
| 608 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 609 | Example:
|
|---|
| 610 | plotter.set_colors("black")
|
|---|
| 611 | plotter.set_linestyles("line dashed dotted dashdot")
|
|---|
| 612 | # If for example four lines are overlaid e.g I Q U V
|
|---|
| 613 | # 'I' will be 'solid', 'Q' will be 'dashed',
|
|---|
| 614 | # U will be 'dotted' and 'V' will be 'dashdot'.
|
|---|
| 615 | """
|
|---|
| 616 | if isinstance(linestyles,str):
|
|---|
| 617 | linestyles = linestyles.split()
|
|---|
| 618 | self._plotter.palette(color=0,linestyle=0,linestyles=linestyles)
|
|---|
| 619 | if isinstance(linewidth, float) or isinstance(linewidth, int):
|
|---|
| 620 | from matplotlib import rc as rcp
|
|---|
| 621 | rcp('lines', linewidth=linewidth)
|
|---|
| 622 | if refresh and self._data: self.plot(self._data)
|
|---|
| 623 |
|
|---|
| 624 | def set_font(self, refresh=True,**kwargs):
|
|---|
| 625 | """
|
|---|
| 626 | Set font properties.
|
|---|
| 627 | Parameters:
|
|---|
| 628 | family: one of 'sans-serif', 'serif', 'cursive', 'fantasy', 'monospace'
|
|---|
| 629 | style: one of 'normal' (or 'roman'), 'italic' or 'oblique'
|
|---|
| 630 | weight: one of 'normal or 'bold'
|
|---|
| 631 | size: the 'general' font size, individual elements can be adjusted
|
|---|
| 632 | seperately
|
|---|
| 633 | refresh: True (default) or False. If True, the plot is
|
|---|
| 634 | replotted based on the new parameter setting(s).
|
|---|
| 635 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 636 | """
|
|---|
| 637 | from matplotlib import rc as rcp
|
|---|
| 638 | fdict = {}
|
|---|
| 639 | for k,v in kwargs.iteritems():
|
|---|
| 640 | if v:
|
|---|
| 641 | fdict[k] = v
|
|---|
| 642 | self._fp = FontProperties(**fdict)
|
|---|
| 643 | if refresh and self._data: self.plot(self._data)
|
|---|
| 644 |
|
|---|
| 645 | def set_margin(self,margin=[],refresh=True):
|
|---|
| 646 | """
|
|---|
| 647 | Set margins between subplots and plot edges.
|
|---|
| 648 | Parameters:
|
|---|
| 649 | margin: a list of margins in figure coordinate (0-1),
|
|---|
| 650 | i.e., fraction of the figure width or height.
|
|---|
| 651 | The order of elements should be:
|
|---|
| 652 | [left, bottom, right, top, horizontal space btw panels,
|
|---|
| 653 | vertical space btw panels].
|
|---|
| 654 | refresh: True (default) or False. If True, the plot is
|
|---|
| 655 | replotted based on the new parameter setting(s).
|
|---|
| 656 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 657 | Note
|
|---|
| 658 | * When margin is not specified, the values are reset to the defaults
|
|---|
| 659 | of matplotlib.
|
|---|
| 660 | * If any element is set to be None, the current value is adopted.
|
|---|
| 661 | """
|
|---|
| 662 | if margin == []: self._margins=self._reset_margin()
|
|---|
| 663 | else:
|
|---|
| 664 | self._margins=[None]*6
|
|---|
| 665 | self._margins[0:len(margin)]=margin
|
|---|
| 666 | #print "panel margin set to ",self._margins
|
|---|
| 667 | if refresh and self._data: self.plot(self._data)
|
|---|
| 668 |
|
|---|
| 669 | def _reset_margin(self):
|
|---|
| 670 | ks=map(lambda x: 'figure.subplot.'+x,
|
|---|
| 671 | ['left','bottom','right','top','hspace','wspace'])
|
|---|
| 672 | return map(matplotlib.rcParams.get,ks)
|
|---|
| 673 |
|
|---|
| 674 | def plot_lines(self, linecat=None, doppler=0.0, deltachan=10, rotate=90.0,
|
|---|
| 675 | location=None):
|
|---|
| 676 | """
|
|---|
| 677 | Plot a line catalog.
|
|---|
| 678 | Parameters:
|
|---|
| 679 | linecat: the linecatalog to plot
|
|---|
| 680 | doppler: the velocity shift to apply to the frequencies
|
|---|
| 681 | deltachan: the number of channels to include each side of the
|
|---|
| 682 | line to determine a local maximum/minimum
|
|---|
| 683 | rotate: the rotation (in degrees) for the text label (default 90.0)
|
|---|
| 684 | location: the location of the line annotation from the 'top',
|
|---|
| 685 | 'bottom' or alternate (None - the default)
|
|---|
| 686 | Notes:
|
|---|
| 687 | If the spectrum is flagged no line will be drawn in that location.
|
|---|
| 688 | """
|
|---|
| 689 | if not self._data:
|
|---|
| 690 | raise RuntimeError("No scantable has been plotted yet.")
|
|---|
| 691 | from asap._asap import linecatalog
|
|---|
| 692 | if not isinstance(linecat, linecatalog):
|
|---|
| 693 | raise ValueError("'linecat' isn't of type linecatalog.")
|
|---|
| 694 | if not self._data.get_unit().endswith("Hz"):
|
|---|
| 695 | raise RuntimeError("Can only overlay linecatalogs when data is in frequency.")
|
|---|
| 696 | from numpy import ma
|
|---|
| 697 | for j in range(len(self._plotter.subplots)):
|
|---|
| 698 | self._plotter.subplot(j)
|
|---|
| 699 | lims = self._plotter.axes.get_xlim()
|
|---|
| 700 | for row in range(linecat.nrow()):
|
|---|
| 701 | # get_frequency returns MHz
|
|---|
| 702 | base = { "GHz": 1000.0, "MHz": 1.0, "Hz": 1.0e-6 }
|
|---|
| 703 | restf = linecat.get_frequency(row)/base[self._data.get_unit()]
|
|---|
| 704 | c = 299792.458
|
|---|
| 705 | freq = restf*(1.0-doppler/c)
|
|---|
| 706 | if lims[0] < freq < lims[1]:
|
|---|
| 707 | if location is None:
|
|---|
| 708 | loc = 'bottom'
|
|---|
| 709 | if row%2: loc='top'
|
|---|
| 710 | else: loc = location
|
|---|
| 711 | maxys = []
|
|---|
| 712 | for line in self._plotter.axes.lines:
|
|---|
| 713 | v = line._x
|
|---|
| 714 | asc = v[0] < v[-1]
|
|---|
| 715 |
|
|---|
| 716 | idx = None
|
|---|
| 717 | if not asc:
|
|---|
| 718 | if v[len(v)-1] <= freq <= v[0]:
|
|---|
| 719 | i = len(v)-1
|
|---|
| 720 | while i>=0 and v[i] < freq:
|
|---|
| 721 | idx = i
|
|---|
| 722 | i-=1
|
|---|
| 723 | else:
|
|---|
| 724 | if v[0] <= freq <= v[len(v)-1]:
|
|---|
| 725 | i = 0
|
|---|
| 726 | while i<len(v) and v[i] < freq:
|
|---|
| 727 | idx = i
|
|---|
| 728 | i+=1
|
|---|
| 729 | if idx is not None:
|
|---|
| 730 | lower = idx - deltachan
|
|---|
| 731 | upper = idx + deltachan
|
|---|
| 732 | if lower < 0: lower = 0
|
|---|
| 733 | if upper > len(v): upper = len(v)
|
|---|
| 734 | s = slice(lower, upper)
|
|---|
| 735 | y = line._y[s]
|
|---|
| 736 | maxy = ma.maximum(y)
|
|---|
| 737 | if isinstance( maxy, float):
|
|---|
| 738 | maxys.append(maxy)
|
|---|
| 739 | if len(maxys):
|
|---|
| 740 | peak = max(maxys)
|
|---|
| 741 | if peak > self._plotter.axes.get_ylim()[1]:
|
|---|
| 742 | loc = 'bottom'
|
|---|
| 743 | else:
|
|---|
| 744 | continue
|
|---|
| 745 | self._plotter.vline_with_label(freq, peak,
|
|---|
| 746 | linecat.get_name(row),
|
|---|
| 747 | location=loc, rotate=rotate)
|
|---|
| 748 | self._plotter.show(hardrefresh=False)
|
|---|
| 749 |
|
|---|
| 750 |
|
|---|
| 751 | def save(self, filename=None, orientation=None, dpi=None):
|
|---|
| 752 | """
|
|---|
| 753 | Save the plot to a file. The known formats are 'png', 'ps', 'eps'.
|
|---|
| 754 | Parameters:
|
|---|
| 755 | filename: The name of the output file. This is optional
|
|---|
| 756 | and autodetects the image format from the file
|
|---|
| 757 | suffix. If non filename is specified a file
|
|---|
| 758 | called 'yyyymmdd_hhmmss.png' is created in the
|
|---|
| 759 | current directory.
|
|---|
| 760 | orientation: optional parameter for postscript only (not eps).
|
|---|
| 761 | 'landscape', 'portrait' or None (default) are valid.
|
|---|
| 762 | If None is choosen for 'ps' output, the plot is
|
|---|
| 763 | automatically oriented to fill the page.
|
|---|
| 764 | dpi: The dpi of the output non-ps plot
|
|---|
| 765 | """
|
|---|
| 766 | self._plotter.save(filename,orientation,dpi)
|
|---|
| 767 | return
|
|---|
| 768 |
|
|---|
| 769 | @asaplog_post_dec
|
|---|
| 770 | def set_mask(self, mask=None, selection=None, refresh=True):
|
|---|
| 771 | """
|
|---|
| 772 | Set a plotting mask for a specific polarization.
|
|---|
| 773 | This is useful for masking out "noise" Pangle outside a source.
|
|---|
| 774 | Parameters:
|
|---|
| 775 | mask: a mask from scantable.create_mask
|
|---|
| 776 | selection: the spectra to apply the mask to.
|
|---|
| 777 | refresh: True (default) or False. If True, the plot is
|
|---|
| 778 | replotted based on the new parameter setting(s).
|
|---|
| 779 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 780 | Example:
|
|---|
| 781 | select = selector()
|
|---|
| 782 | select.setpolstrings("Pangle")
|
|---|
| 783 | plotter.set_mask(mymask, select)
|
|---|
| 784 | """
|
|---|
| 785 | if not self._data:
|
|---|
| 786 | msg = "Can only set mask after a first call to plot()"
|
|---|
| 787 | raise RuntimeError(msg)
|
|---|
| 788 | if len(mask):
|
|---|
| 789 | if isinstance(mask, list) or isinstance(mask, tuple):
|
|---|
| 790 | self._usermask = array(mask)
|
|---|
| 791 | else:
|
|---|
| 792 | self._usermask = mask
|
|---|
| 793 | if mask is None and selection is None:
|
|---|
| 794 | self._usermask = []
|
|---|
| 795 | self._maskselection = None
|
|---|
| 796 | if isinstance(selection, selector):
|
|---|
| 797 | self._maskselection = {'b': selection.get_beams(),
|
|---|
| 798 | 's': selection.get_scans(),
|
|---|
| 799 | 'i': selection.get_ifs(),
|
|---|
| 800 | 'p': selection.get_pols(),
|
|---|
| 801 | 't': [] }
|
|---|
| 802 | else:
|
|---|
| 803 | self._maskselection = None
|
|---|
| 804 | if refresh: self.plot(self._data)
|
|---|
| 805 |
|
|---|
| 806 | def _slice_indeces(self, data):
|
|---|
| 807 | mn = self._minmaxx[0]
|
|---|
| 808 | mx = self._minmaxx[1]
|
|---|
| 809 | asc = data[0] < data[-1]
|
|---|
| 810 | start=0
|
|---|
| 811 | end = len(data)-1
|
|---|
| 812 | inc = 1
|
|---|
| 813 | if not asc:
|
|---|
| 814 | start = len(data)-1
|
|---|
| 815 | end = 0
|
|---|
| 816 | inc = -1
|
|---|
| 817 | # find min index
|
|---|
| 818 | #while start > 0 and data[start] < mn:
|
|---|
| 819 | # start+= inc
|
|---|
| 820 | minind=start
|
|---|
| 821 | for ind in xrange(start,end+inc,inc):
|
|---|
| 822 | if data[ind] > mn: break
|
|---|
| 823 | minind=ind
|
|---|
| 824 | # find max index
|
|---|
| 825 | #while end > 0 and data[end] > mx:
|
|---|
| 826 | # end-=inc
|
|---|
| 827 | #if end > 0: end +=1
|
|---|
| 828 | maxind=end
|
|---|
| 829 | for ind in xrange(end,start-inc,-inc):
|
|---|
| 830 | if data[ind] < mx: break
|
|---|
| 831 | maxind=ind
|
|---|
| 832 | start=minind
|
|---|
| 833 | end=maxind
|
|---|
| 834 | if start > end:
|
|---|
| 835 | return end,start+1
|
|---|
| 836 | elif start < end:
|
|---|
| 837 | return start,end+1
|
|---|
| 838 | else:
|
|---|
| 839 | return start,end
|
|---|
| 840 |
|
|---|
| 841 | def _reset(self):
|
|---|
| 842 | self._usermask = []
|
|---|
| 843 | self._usermaskspectra = None
|
|---|
| 844 | self._offset = None
|
|---|
| 845 | self.set_selection(None, False)
|
|---|
| 846 | self._reset_header()
|
|---|
| 847 |
|
|---|
| 848 | def _reset_header(self):
|
|---|
| 849 | self._headsize = None
|
|---|
| 850 | self._headstring = None
|
|---|
| 851 |
|
|---|
| 852 | def _plot(self, scan):
|
|---|
| 853 | savesel = scan.get_selection()
|
|---|
| 854 | sel = savesel + self._selection
|
|---|
| 855 | order = self._get_sortstring([self._panelling,self._stacking])
|
|---|
| 856 | if order:
|
|---|
| 857 | sel.set_order(order)
|
|---|
| 858 | scan.set_selection(sel)
|
|---|
| 859 | d = {'b': scan.getbeam, 's': scan.getscan,
|
|---|
| 860 | 'i': scan.getif, 'p': scan.getpol, 't': scan.get_time,
|
|---|
| 861 | 'r': int}#, '_r': int}
|
|---|
| 862 |
|
|---|
| 863 | polmodes = dict(zip(self._selection.get_pols(),
|
|---|
| 864 | self._selection.get_poltypes()))
|
|---|
| 865 | # this returns either a tuple of numbers or a length (ncycles)
|
|---|
| 866 | # convert this into lengths
|
|---|
| 867 | n0,nstack0 = self._get_selected_n(scan)
|
|---|
| 868 | if isinstance(n0, int): n = n0
|
|---|
| 869 | else: n = len(n0)
|
|---|
| 870 | if isinstance(nstack0, int): nstack = nstack0
|
|---|
| 871 | else: nstack = len(nstack0)
|
|---|
| 872 | # In case of row stacking
|
|---|
| 873 | rowstack = False
|
|---|
| 874 | titlemode = self._panelling
|
|---|
| 875 | if self._stacking == "r" and self._panelling != "r":
|
|---|
| 876 | rowstack = True
|
|---|
| 877 | titlemode = '_r'
|
|---|
| 878 | nptot = n
|
|---|
| 879 | maxpanel, maxstack = 16,16
|
|---|
| 880 | if nstack > maxstack:
|
|---|
| 881 | msg ="Scan to be overlayed contains more than %d selections.\n" \
|
|---|
| 882 | "Selecting first %d selections..." % (maxstack, maxstack)
|
|---|
| 883 | asaplog.push(msg)
|
|---|
| 884 | asaplog.post('WARN')
|
|---|
| 885 | nstack = min(nstack,maxstack)
|
|---|
| 886 | #n = min(n-self._ipanel-1,maxpanel)
|
|---|
| 887 | n = n-self._ipanel-1
|
|---|
| 888 |
|
|---|
| 889 | ganged = False
|
|---|
| 890 | if n > 1:
|
|---|
| 891 | ganged = rcParams['plotter.ganged']
|
|---|
| 892 | if self._panelling == 'i':
|
|---|
| 893 | ganged = False
|
|---|
| 894 | if self._rows and self._cols:
|
|---|
| 895 | n = min(n,self._rows*self._cols)
|
|---|
| 896 | self._plotter.set_panels(rows=self._rows,cols=self._cols,
|
|---|
| 897 | nplots=n,margin=self._margins,ganged=ganged)
|
|---|
| 898 | else:
|
|---|
| 899 | n = min(n,maxpanel)
|
|---|
| 900 | self._plotter.set_panels(rows=n,cols=0,nplots=n,margin=self._margins,ganged=ganged)
|
|---|
| 901 | else:
|
|---|
| 902 | self._plotter.set_panels(margin=self._margins)
|
|---|
| 903 | #r = 0
|
|---|
| 904 | r = self._startrow
|
|---|
| 905 | nr = scan.nrow()
|
|---|
| 906 | a0,b0 = -1,-1
|
|---|
| 907 | allxlim = []
|
|---|
| 908 | allylim = []
|
|---|
| 909 | #newpanel=True
|
|---|
| 910 | newpanel=False
|
|---|
| 911 | panelcount,stackcount = 0,0
|
|---|
| 912 | # If this is not the first page
|
|---|
| 913 | if r > 0:
|
|---|
| 914 | # panelling value of the prev page
|
|---|
| 915 | a0 = d[self._panelling](r-1)
|
|---|
| 916 | # set the initial stackcount large not to plot
|
|---|
| 917 | # the start row automatically
|
|---|
| 918 | stackcount = nstack
|
|---|
| 919 |
|
|---|
| 920 | while r < nr:
|
|---|
| 921 | a = d[self._panelling](r)
|
|---|
| 922 | b = d[self._stacking](r)
|
|---|
| 923 | if a > a0 and panelcount < n:
|
|---|
| 924 | if n > 1:
|
|---|
| 925 | self._plotter.subplot(panelcount)
|
|---|
| 926 | self._plotter.palette(0)
|
|---|
| 927 | #title
|
|---|
| 928 | xlab = self._abcissa and self._abcissa[panelcount] \
|
|---|
| 929 | or scan._getabcissalabel()
|
|---|
| 930 | if self._offset and not self._abcissa:
|
|---|
| 931 | xlab += " (relative)"
|
|---|
| 932 | ylab = self._ordinate and self._ordinate[panelcount] \
|
|---|
| 933 | or scan._get_ordinate_label()
|
|---|
| 934 | self._plotter.set_axes('xlabel', xlab)
|
|---|
| 935 | self._plotter.set_axes('ylabel', ylab)
|
|---|
| 936 | #lbl = self._get_label(scan, r, self._panelling, self._title)
|
|---|
| 937 | lbl = self._get_label(scan, r, titlemode, self._title)
|
|---|
| 938 | if isinstance(lbl, list) or isinstance(lbl, tuple):
|
|---|
| 939 | if 0 <= panelcount < len(lbl):
|
|---|
| 940 | lbl = lbl[panelcount]
|
|---|
| 941 | else:
|
|---|
| 942 | # get default label
|
|---|
| 943 | #lbl = self._get_label(scan, r, self._panelling, None)
|
|---|
| 944 | lbl = self._get_label(scan, r, titlemode, None)
|
|---|
| 945 | self._plotter.set_axes('title',lbl)
|
|---|
| 946 | newpanel = True
|
|---|
| 947 | stackcount = 0
|
|---|
| 948 | panelcount += 1
|
|---|
| 949 | # save the start row to plot this panel for future revisit.
|
|---|
| 950 | if self._panelling != 'r' and \
|
|---|
| 951 | len(self._panelrows) < self._ipanel+1+panelcount:
|
|---|
| 952 | self._panelrows += [r]
|
|---|
| 953 |
|
|---|
| 954 | #if (b > b0 or newpanel) and stackcount < nstack:
|
|---|
| 955 | if stackcount < nstack and (newpanel or rowstack or (a == a0 and b > b0)):
|
|---|
| 956 | y = []
|
|---|
| 957 | if len(polmodes):
|
|---|
| 958 | y = scan._getspectrum(r, polmodes[scan.getpol(r)])
|
|---|
| 959 | else:
|
|---|
| 960 | y = scan._getspectrum(r)
|
|---|
| 961 | # flag application
|
|---|
| 962 | mr = scan._getflagrow(r)
|
|---|
| 963 | from numpy import ma, array
|
|---|
| 964 | if mr:
|
|---|
| 965 | y = ma.masked_array(y,mask=mr)
|
|---|
| 966 | else:
|
|---|
| 967 | m = scan._getmask(r)
|
|---|
| 968 | from numpy import logical_not, logical_and
|
|---|
| 969 | if self._maskselection and len(self._usermask) == len(m):
|
|---|
| 970 | if d[self._stacking](r) in self._maskselection[self._stacking]:
|
|---|
| 971 | m = logical_and(m, self._usermask)
|
|---|
| 972 | y = ma.masked_array(y,mask=logical_not(array(m,copy=False)))
|
|---|
| 973 |
|
|---|
| 974 | x = array(scan._getabcissa(r))
|
|---|
| 975 | if self._offset:
|
|---|
| 976 | x += self._offset
|
|---|
| 977 | if self._minmaxx is not None:
|
|---|
| 978 | s,e = self._slice_indeces(x)
|
|---|
| 979 | x = x[s:e]
|
|---|
| 980 | y = y[s:e]
|
|---|
| 981 | if len(x) > 1024 and rcParams['plotter.decimate']:
|
|---|
| 982 | fac = len(x)/1024
|
|---|
| 983 | x = x[::fac]
|
|---|
| 984 | y = y[::fac]
|
|---|
| 985 | llbl = self._get_label(scan, r, self._stacking, self._lmap)
|
|---|
| 986 | if isinstance(llbl, list) or isinstance(llbl, tuple):
|
|---|
| 987 | if 0 <= stackcount < len(llbl):
|
|---|
| 988 | # use user label
|
|---|
| 989 | llbl = llbl[stackcount]
|
|---|
| 990 | else:
|
|---|
| 991 | # get default label
|
|---|
| 992 | llbl = self._get_label(scan, r, self._stacking, None)
|
|---|
| 993 | self._plotter.set_line(label=llbl)
|
|---|
| 994 | plotit = self._plotter.plot
|
|---|
| 995 | if self._hist: plotit = self._plotter.hist
|
|---|
| 996 | if len(x) > 0 and not mr:
|
|---|
| 997 | plotit(x,y)
|
|---|
| 998 | xlim= self._minmaxx or [min(x),max(x)]
|
|---|
| 999 | allxlim += xlim
|
|---|
| 1000 | ylim= self._minmaxy or [ma.minimum(y),ma.maximum(y)]
|
|---|
| 1001 | allylim += ylim
|
|---|
| 1002 | else:
|
|---|
| 1003 | xlim = self._minmaxx or []
|
|---|
| 1004 | allxlim += xlim
|
|---|
| 1005 | ylim= self._minmaxy or []
|
|---|
| 1006 | allylim += ylim
|
|---|
| 1007 | stackcount += 1
|
|---|
| 1008 | a0=a
|
|---|
| 1009 | b0=b
|
|---|
| 1010 | # last in colour stack -> autoscale x
|
|---|
| 1011 | if stackcount == nstack and len(allxlim) > 0:
|
|---|
| 1012 | allxlim.sort()
|
|---|
| 1013 | self._plotter.subplots[panelcount-1]['axes'].set_xlim([allxlim[0],allxlim[-1]])
|
|---|
| 1014 | if ganged:
|
|---|
| 1015 | allxlim = [allxlim[0],allxlim[-1]]
|
|---|
| 1016 | else:
|
|---|
| 1017 | # clear
|
|---|
| 1018 | allxlim =[]
|
|---|
| 1019 |
|
|---|
| 1020 | newpanel = False
|
|---|
| 1021 | #a0=a
|
|---|
| 1022 | #b0=b
|
|---|
| 1023 | # ignore following rows
|
|---|
| 1024 | if (panelcount == n and stackcount == nstack) or (r == nr-1):
|
|---|
| 1025 | # last panel -> autoscale y if ganged
|
|---|
| 1026 | #if rcParams['plotter.ganged'] and len(allylim) > 0:
|
|---|
| 1027 | if ganged and len(allylim) > 0:
|
|---|
| 1028 | allylim.sort()
|
|---|
| 1029 | self._plotter.set_limits(ylim=[allylim[0],allylim[-1]])
|
|---|
| 1030 | break
|
|---|
| 1031 | r+=1 # next row
|
|---|
| 1032 |
|
|---|
| 1033 | # save the current counter for multi-page plotting
|
|---|
| 1034 | self._startrow = r+1
|
|---|
| 1035 | self._ipanel += panelcount
|
|---|
| 1036 | if self._plotter.figmgr.casabar:
|
|---|
| 1037 | if self._ipanel >= nptot-1:
|
|---|
| 1038 | self._plotter.figmgr.casabar.disable_next()
|
|---|
| 1039 | else:
|
|---|
| 1040 | self._plotter.figmgr.casabar.enable_next()
|
|---|
| 1041 | if self._ipanel + 1 - panelcount > 0:
|
|---|
| 1042 | self._plotter.figmgr.casabar.enable_prev()
|
|---|
| 1043 | else:
|
|---|
| 1044 | self._plotter.figmgr.casabar.disable_prev()
|
|---|
| 1045 |
|
|---|
| 1046 | #reset the selector to the scantable's original
|
|---|
| 1047 | scan.set_selection(savesel)
|
|---|
| 1048 |
|
|---|
| 1049 | #temporary switch-off for older matplotlib
|
|---|
| 1050 | #if self._fp is not None:
|
|---|
| 1051 | if self._fp is not None and getattr(self._plotter.figure,'findobj',False):
|
|---|
| 1052 | for o in self._plotter.figure.findobj(Text):
|
|---|
| 1053 | o.set_fontproperties(self._fp)
|
|---|
| 1054 |
|
|---|
| 1055 | def _get_sortstring(self, lorders):
|
|---|
| 1056 | d0 = {'s': 'SCANNO', 'b': 'BEAMNO', 'i':'IFNO',
|
|---|
| 1057 | 'p': 'POLNO', 'c': 'CYCLENO', 't' : 'TIME', 'r':None, '_r':None }
|
|---|
| 1058 | if not (type(lorders) == list) and not (type(lorders) == tuple):
|
|---|
| 1059 | return None
|
|---|
| 1060 | if len(lorders) > 0:
|
|---|
| 1061 | lsorts = []
|
|---|
| 1062 | for order in lorders:
|
|---|
| 1063 | if order == "r":
|
|---|
| 1064 | # don't sort if row panelling/stacking
|
|---|
| 1065 | return None
|
|---|
| 1066 | ssort = d0[order]
|
|---|
| 1067 | if ssort:
|
|---|
| 1068 | lsorts.append(ssort)
|
|---|
| 1069 | return lsorts
|
|---|
| 1070 | return None
|
|---|
| 1071 |
|
|---|
| 1072 | def set_selection(self, selection=None, refresh=True, **kw):
|
|---|
| 1073 | """
|
|---|
| 1074 | Parameters:
|
|---|
| 1075 | selection: a selector object (default unset the selection)
|
|---|
| 1076 | refresh: True (default) or False. If True, the plot is
|
|---|
| 1077 | replotted based on the new parameter setting(s).
|
|---|
| 1078 | Otherwise,the parameter(s) are set without replotting.
|
|---|
| 1079 | """
|
|---|
| 1080 | if selection is None:
|
|---|
| 1081 | # reset
|
|---|
| 1082 | if len(kw) == 0:
|
|---|
| 1083 | self._selection = selector()
|
|---|
| 1084 | else:
|
|---|
| 1085 | # try keywords
|
|---|
| 1086 | for k in kw:
|
|---|
| 1087 | if k not in selector.fields:
|
|---|
| 1088 | raise KeyError("Invalid selection key '%s', valid keys are %s" % (k, selector.fields))
|
|---|
| 1089 | self._selection = selector(**kw)
|
|---|
| 1090 | elif isinstance(selection, selector):
|
|---|
| 1091 | self._selection = selection
|
|---|
| 1092 | else:
|
|---|
| 1093 | raise TypeError("'selection' is not of type selector")
|
|---|
| 1094 |
|
|---|
| 1095 | order = self._get_sortstring([self._panelling,self._stacking])
|
|---|
| 1096 | if order:
|
|---|
| 1097 | self._selection.set_order(order)
|
|---|
| 1098 | if refresh and self._data: self.plot(self._data)
|
|---|
| 1099 |
|
|---|
| 1100 | def _get_selected_n(self, scan):
|
|---|
| 1101 | d1 = {'b': scan.getbeamnos, 's': scan.getscannos,
|
|---|
| 1102 | 'i': scan.getifnos, 'p': scan.getpolnos, 't': scan.ncycle,
|
|---|
| 1103 | 'r': scan.nrow}#, '_r': False}
|
|---|
| 1104 | d2 = { 'b': self._selection.get_beams(),
|
|---|
| 1105 | 's': self._selection.get_scans(),
|
|---|
| 1106 | 'i': self._selection.get_ifs(),
|
|---|
| 1107 | 'p': self._selection.get_pols(),
|
|---|
| 1108 | 't': self._selection.get_cycles(),
|
|---|
| 1109 | 'r': False}#, '_r': 1}
|
|---|
| 1110 | n = d2[self._panelling] or d1[self._panelling]()
|
|---|
| 1111 | nstack = d2[self._stacking] or d1[self._stacking]()
|
|---|
| 1112 | # handle row panelling/stacking
|
|---|
| 1113 | if self._panelling == 'r':
|
|---|
| 1114 | nstack = 1
|
|---|
| 1115 | elif self._stacking == 'r':
|
|---|
| 1116 | n = 1
|
|---|
| 1117 | return n,nstack
|
|---|
| 1118 |
|
|---|
| 1119 | def _get_label(self, scan, row, mode, userlabel=None):
|
|---|
| 1120 | if isinstance(userlabel, list) and len(userlabel) == 0:
|
|---|
| 1121 | userlabel = " "
|
|---|
| 1122 | pms = dict(zip(self._selection.get_pols(),self._selection.get_poltypes()))
|
|---|
| 1123 | if len(pms):
|
|---|
| 1124 | poleval = scan._getpollabel(scan.getpol(row),pms[scan.getpol(row)])
|
|---|
| 1125 | else:
|
|---|
| 1126 | poleval = scan._getpollabel(scan.getpol(row),scan.poltype())
|
|---|
| 1127 | d = {'b': "Beam "+str(scan.getbeam(row)),
|
|---|
| 1128 | #'s': scan._getsourcename(row),
|
|---|
| 1129 | 's': "Scan "+str(scan.getscan(row))+\
|
|---|
| 1130 | " ("+str(scan._getsourcename(row))+")",
|
|---|
| 1131 | 'i': "IF"+str(scan.getif(row)),
|
|---|
| 1132 | 'p': poleval,
|
|---|
| 1133 | 't': str(scan.get_time(row)),
|
|---|
| 1134 | 'r': "row "+str(row),
|
|---|
| 1135 | #'_r': str(scan.get_time(row))+",\nIF"+str(scan.getif(row))+", "+poleval+", Beam"+str(scan.getbeam(row)) }
|
|---|
| 1136 | '_r': "" }
|
|---|
| 1137 | return userlabel or d[mode]
|
|---|
| 1138 |
|
|---|
| 1139 | def plotazel(self, scan=None, outfile=None):
|
|---|
| 1140 | """
|
|---|
| 1141 | plot azimuth and elevation versus time of a scantable
|
|---|
| 1142 | """
|
|---|
| 1143 | visible = rcParams['plotter.gui']
|
|---|
| 1144 | from matplotlib import pylab as PL
|
|---|
| 1145 | from matplotlib.dates import DateFormatter, timezone
|
|---|
| 1146 | from matplotlib.dates import HourLocator, MinuteLocator,SecondLocator, DayLocator
|
|---|
| 1147 | from matplotlib.ticker import MultipleLocator
|
|---|
| 1148 | from numpy import array, pi
|
|---|
| 1149 | if not visible or not self._visible:
|
|---|
| 1150 | PL.ioff()
|
|---|
| 1151 | from matplotlib.backends.backend_agg import FigureCanvasAgg
|
|---|
| 1152 | PL.gcf().canvas.switch_backends(FigureCanvasAgg)
|
|---|
| 1153 | self._data = scan
|
|---|
| 1154 | self._outfile = outfile
|
|---|
| 1155 | dates = self._data.get_time(asdatetime=True)
|
|---|
| 1156 | t = PL.date2num(dates)
|
|---|
| 1157 | tz = timezone('UTC')
|
|---|
| 1158 | PL.cla()
|
|---|
| 1159 | PL.ioff()
|
|---|
| 1160 | PL.clf()
|
|---|
| 1161 | # Adjust subplot margins
|
|---|
| 1162 | if len(self._margins) != 6:
|
|---|
| 1163 | self.set_margin(refresh=False)
|
|---|
| 1164 | lef, bot, rig, top, wsp, hsp = self._margins
|
|---|
| 1165 | PL.gcf().subplots_adjust(left=lef,bottom=bot,right=rig,top=top,
|
|---|
| 1166 | wspace=wsp,hspace=hsp)
|
|---|
| 1167 |
|
|---|
| 1168 | tdel = max(t) - min(t)
|
|---|
| 1169 | ax = PL.subplot(2,1,1)
|
|---|
| 1170 | el = array(self._data.get_elevation())*180./pi
|
|---|
| 1171 | PL.ylabel('El [deg.]')
|
|---|
| 1172 | dstr = dates[0].strftime('%Y/%m/%d')
|
|---|
| 1173 | if tdel > 1.0:
|
|---|
| 1174 | dstr2 = dates[len(dates)-1].strftime('%Y/%m/%d')
|
|---|
| 1175 | dstr = dstr + " - " + dstr2
|
|---|
| 1176 | majloc = DayLocator()
|
|---|
| 1177 | minloc = HourLocator(range(0,23,12))
|
|---|
| 1178 | timefmt = DateFormatter("%b%d")
|
|---|
| 1179 | elif tdel > 24./60.:
|
|---|
| 1180 | timefmt = DateFormatter('%H:%M')
|
|---|
| 1181 | majloc = HourLocator()
|
|---|
| 1182 | minloc = MinuteLocator(30)
|
|---|
| 1183 | else:
|
|---|
| 1184 | timefmt = DateFormatter('%H:%M')
|
|---|
| 1185 | majloc = MinuteLocator(interval=5)
|
|---|
| 1186 | minloc = SecondLocator(30)
|
|---|
| 1187 |
|
|---|
| 1188 | PL.title(dstr)
|
|---|
| 1189 | if tdel == 0.0:
|
|---|
| 1190 | th = (t - PL.floor(t))*24.0
|
|---|
| 1191 | PL.plot(th,el,'o',markersize=2, markerfacecolor='b', markeredgecolor='b')
|
|---|
| 1192 | else:
|
|---|
| 1193 | PL.plot_date(t,el,'o', markersize=2, markerfacecolor='b', markeredgecolor='b',tz=tz)
|
|---|
| 1194 | #ax.grid(True)
|
|---|
| 1195 | ax.xaxis.set_major_formatter(timefmt)
|
|---|
| 1196 | ax.xaxis.set_major_locator(majloc)
|
|---|
| 1197 | ax.xaxis.set_minor_locator(minloc)
|
|---|
| 1198 | ax.yaxis.grid(True)
|
|---|
| 1199 | yloc = MultipleLocator(30)
|
|---|
| 1200 | ax.set_ylim(0,90)
|
|---|
| 1201 | ax.yaxis.set_major_locator(yloc)
|
|---|
| 1202 | if tdel > 1.0:
|
|---|
| 1203 | labels = ax.get_xticklabels()
|
|---|
| 1204 | # PL.setp(labels, fontsize=10, rotation=45)
|
|---|
| 1205 | PL.setp(labels, fontsize=10)
|
|---|
| 1206 |
|
|---|
| 1207 | # Az plot
|
|---|
| 1208 | az = array(self._data.get_azimuth())*180./pi
|
|---|
| 1209 | if min(az) < 0:
|
|---|
| 1210 | for irow in range(len(az)):
|
|---|
| 1211 | if az[irow] < 0: az[irow] += 360.0
|
|---|
| 1212 |
|
|---|
| 1213 | ax2 = PL.subplot(2,1,2)
|
|---|
| 1214 | #PL.xlabel('Time (UT [hour])')
|
|---|
| 1215 | PL.ylabel('Az [deg.]')
|
|---|
| 1216 | if tdel == 0.0:
|
|---|
| 1217 | PL.plot(th,az,'o',markersize=2, markeredgecolor='b',markerfacecolor='b')
|
|---|
| 1218 | else:
|
|---|
| 1219 | PL.plot_date(t,az,'o', markersize=2,markeredgecolor='b',markerfacecolor='b',tz=tz)
|
|---|
| 1220 | ax2.xaxis.set_major_formatter(timefmt)
|
|---|
| 1221 | ax2.xaxis.set_major_locator(majloc)
|
|---|
| 1222 | ax2.xaxis.set_minor_locator(minloc)
|
|---|
| 1223 | #ax2.grid(True)
|
|---|
| 1224 | ax2.set_ylim(0,360)
|
|---|
| 1225 | ax2.yaxis.grid(True)
|
|---|
| 1226 | #hfmt = DateFormatter('%H')
|
|---|
| 1227 | #hloc = HourLocator()
|
|---|
| 1228 | yloc = MultipleLocator(60)
|
|---|
| 1229 | ax2.yaxis.set_major_locator(yloc)
|
|---|
| 1230 | if tdel > 1.0:
|
|---|
| 1231 | labels = ax2.get_xticklabels()
|
|---|
| 1232 | PL.setp(labels, fontsize=10)
|
|---|
| 1233 | PL.xlabel('Time (UT [day])')
|
|---|
| 1234 | else:
|
|---|
| 1235 | PL.xlabel('Time (UT [hour])')
|
|---|
| 1236 |
|
|---|
| 1237 | PL.ion()
|
|---|
| 1238 | PL.draw()
|
|---|
| 1239 | if (self._outfile is not None):
|
|---|
| 1240 | PL.savefig(self._outfile)
|
|---|
| 1241 |
|
|---|
| 1242 | def plotpointing(self, scan=None, outfile=None):
|
|---|
| 1243 | """
|
|---|
| 1244 | plot telescope pointings
|
|---|
| 1245 | """
|
|---|
| 1246 | visible = rcParams['plotter.gui']
|
|---|
| 1247 | from matplotlib import pylab as PL
|
|---|
| 1248 | from numpy import array, pi
|
|---|
| 1249 | if not visible or not self._visible:
|
|---|
| 1250 | PL.ioff()
|
|---|
| 1251 | from matplotlib.backends.backend_agg import FigureCanvasAgg
|
|---|
| 1252 | PL.gcf().canvas.switch_backends(FigureCanvasAgg)
|
|---|
| 1253 | self._data = scan
|
|---|
| 1254 | self._outfile = outfile
|
|---|
| 1255 | dir = array(self._data.get_directionval()).transpose()
|
|---|
| 1256 | ra = dir[0]*180./pi
|
|---|
| 1257 | dec = dir[1]*180./pi
|
|---|
| 1258 | PL.cla()
|
|---|
| 1259 | #PL.ioff()
|
|---|
| 1260 | PL.clf()
|
|---|
| 1261 | # Adjust subplot margins
|
|---|
| 1262 | if len(self._margins) != 6:
|
|---|
| 1263 | self.set_margin(refresh=False)
|
|---|
| 1264 | lef, bot, rig, top, wsp, hsp = self._margins
|
|---|
| 1265 | PL.gcf().subplots_adjust(left=lef,bottom=bot,right=rig,top=top,
|
|---|
| 1266 | wspace=wsp,hspace=hsp)
|
|---|
| 1267 | ax = PL.gca()
|
|---|
| 1268 | #ax = PL.axes([0.1,0.1,0.8,0.8])
|
|---|
| 1269 | #ax = PL.axes([0.1,0.1,0.8,0.8])
|
|---|
| 1270 | ax.set_aspect('equal')
|
|---|
| 1271 | PL.plot(ra, dec, 'b,')
|
|---|
| 1272 | PL.xlabel('RA [deg.]')
|
|---|
| 1273 | PL.ylabel('Declination [deg.]')
|
|---|
| 1274 | PL.title('Telescope pointings')
|
|---|
| 1275 | [xmin,xmax,ymin,ymax] = PL.axis()
|
|---|
| 1276 | PL.axis([xmax,xmin,ymin,ymax])
|
|---|
| 1277 | #PL.ion()
|
|---|
| 1278 | PL.draw()
|
|---|
| 1279 | if (self._outfile is not None):
|
|---|
| 1280 | PL.savefig(self._outfile)
|
|---|
| 1281 |
|
|---|
| 1282 | # plot total power data
|
|---|
| 1283 | # plotting in time is not yet implemented..
|
|---|
| 1284 | @asaplog_post_dec
|
|---|
| 1285 | def plottp(self, scan=None, outfile=None):
|
|---|
| 1286 | if self._plotter.is_dead:
|
|---|
| 1287 | if hasattr(self._plotter.figmgr,'casabar'):
|
|---|
| 1288 | del self._plotter.figmgr.casabar
|
|---|
| 1289 | self._plotter = self._newplotter()
|
|---|
| 1290 | self._plotter.figmgr.casabar=self._newcasabar()
|
|---|
| 1291 | self._plotter.hold()
|
|---|
| 1292 | self._plotter.clear()
|
|---|
| 1293 | from asap import scantable
|
|---|
| 1294 | if not self._data and not scan:
|
|---|
| 1295 | msg = "Input is not a scantable"
|
|---|
| 1296 | raise TypeError(msg)
|
|---|
| 1297 | if isinstance(scan, scantable):
|
|---|
| 1298 | if self._data is not None:
|
|---|
| 1299 | if scan != self._data:
|
|---|
| 1300 | self._data = scan
|
|---|
| 1301 | # reset
|
|---|
| 1302 | self._reset()
|
|---|
| 1303 | else:
|
|---|
| 1304 | self._data = scan
|
|---|
| 1305 | self._reset()
|
|---|
| 1306 | # ranges become invalid when abcissa changes?
|
|---|
| 1307 | #if self._abcunit and self._abcunit != self._data.get_unit():
|
|---|
| 1308 | # self._minmaxx = None
|
|---|
| 1309 | # self._minmaxy = None
|
|---|
| 1310 | # self._abcunit = self._data.get_unit()
|
|---|
| 1311 | # self._datamask = None
|
|---|
| 1312 |
|
|---|
| 1313 | # Adjust subplot margins
|
|---|
| 1314 | if len(self._margins) !=6: self.set_margin(refresh=False)
|
|---|
| 1315 | lef, bot, rig, top, wsp, hsp = self._margins
|
|---|
| 1316 | self._plotter.figure.subplots_adjust(
|
|---|
| 1317 | left=lef,bottom=bot,right=rig,top=top,wspace=wsp,hspace=hsp)
|
|---|
| 1318 | if self._plotter.figmgr.casabar: self._plotter.figmgr.casabar.disable_button()
|
|---|
| 1319 | self._plottp(self._data)
|
|---|
| 1320 | if self._minmaxy is not None:
|
|---|
| 1321 | self._plotter.set_limits(ylim=self._minmaxy)
|
|---|
| 1322 | self._plotter.release()
|
|---|
| 1323 | self._plotter.tidy()
|
|---|
| 1324 | self._plotter.show(hardrefresh=False)
|
|---|
| 1325 | return
|
|---|
| 1326 |
|
|---|
| 1327 | def _plottp(self,scan):
|
|---|
| 1328 | """
|
|---|
| 1329 | private method for plotting total power data
|
|---|
| 1330 | """
|
|---|
| 1331 | from numpy import ma, array, arange, logical_not
|
|---|
| 1332 | r=0
|
|---|
| 1333 | nr = scan.nrow()
|
|---|
| 1334 | a0,b0 = -1,-1
|
|---|
| 1335 | allxlim = []
|
|---|
| 1336 | allylim = []
|
|---|
| 1337 | y=[]
|
|---|
| 1338 | self._plotter.set_panels()
|
|---|
| 1339 | self._plotter.palette(0)
|
|---|
| 1340 | #title
|
|---|
| 1341 | #xlab = self._abcissa and self._abcissa[panelcount] \
|
|---|
| 1342 | # or scan._getabcissalabel()
|
|---|
| 1343 | #ylab = self._ordinate and self._ordinate[panelcount] \
|
|---|
| 1344 | # or scan._get_ordinate_label()
|
|---|
| 1345 | xlab = self._abcissa or 'row number' #or Time
|
|---|
| 1346 | ylab = self._ordinate or scan._get_ordinate_label()
|
|---|
| 1347 | self._plotter.set_axes('xlabel',xlab)
|
|---|
| 1348 | self._plotter.set_axes('ylabel',ylab)
|
|---|
| 1349 | lbl = self._get_label(scan, r, 's', self._title)
|
|---|
| 1350 | if isinstance(lbl, list) or isinstance(lbl, tuple):
|
|---|
| 1351 | # if 0 <= panelcount < len(lbl):
|
|---|
| 1352 | # lbl = lbl[panelcount]
|
|---|
| 1353 | # else:
|
|---|
| 1354 | # get default label
|
|---|
| 1355 | lbl = self._get_label(scan, r, self._panelling, None)
|
|---|
| 1356 | self._plotter.set_axes('title',lbl)
|
|---|
| 1357 | y=array(scan._get_column(scan._getspectrum,-1))
|
|---|
| 1358 | m = array(scan._get_column(scan._getmask,-1))
|
|---|
| 1359 | y = ma.masked_array(y,mask=logical_not(array(m,copy=False)))
|
|---|
| 1360 | x = arange(len(y))
|
|---|
| 1361 | # try to handle spectral data somewhat...
|
|---|
| 1362 | l,m = y.shape
|
|---|
| 1363 | if m > 1:
|
|---|
| 1364 | y=y.mean(axis=1)
|
|---|
| 1365 | plotit = self._plotter.plot
|
|---|
| 1366 | llbl = self._get_label(scan, r, self._stacking, None)
|
|---|
| 1367 | self._plotter.set_line(label=llbl)
|
|---|
| 1368 | if len(x) > 0:
|
|---|
| 1369 | plotit(x,y)
|
|---|
| 1370 |
|
|---|
| 1371 |
|
|---|
| 1372 | # forwards to matplotlib.Figure.text
|
|---|
| 1373 | def figtext(self, *args, **kwargs):
|
|---|
| 1374 | """
|
|---|
| 1375 | Add text to figure at location x,y (relative 0-1 coords).
|
|---|
| 1376 | This method forwards *args and **kwargs to a Matplotlib method,
|
|---|
| 1377 | matplotlib.Figure.text.
|
|---|
| 1378 | See the method help for detailed information.
|
|---|
| 1379 | """
|
|---|
| 1380 | self._plotter.text(*args, **kwargs)
|
|---|
| 1381 | # end matplotlib.Figure.text forwarding function
|
|---|
| 1382 |
|
|---|
| 1383 |
|
|---|
| 1384 | # printing header information
|
|---|
| 1385 | @asaplog_post_dec
|
|---|
| 1386 | def print_header(self, plot=True, fontsize=None, logger=False, selstr='', extrastr=''):
|
|---|
| 1387 | """
|
|---|
| 1388 | print data (scantable) header on the plot and/or logger.
|
|---|
| 1389 | Parameters:
|
|---|
| 1390 | plot: whether or not print header info on the plot.
|
|---|
| 1391 | fontsize: header font size (valid only plot=True) default: 9
|
|---|
| 1392 | logger: whether or not print header info on the logger.
|
|---|
| 1393 | selstr: additional selection string (not verified)
|
|---|
| 1394 | extrastr: additional string to print (not verified)
|
|---|
| 1395 | """
|
|---|
| 1396 | if not plot and not logger:
|
|---|
| 1397 | return
|
|---|
| 1398 | if not self._data:
|
|---|
| 1399 | raise RuntimeError("No scantable has been set yet.")
|
|---|
| 1400 | # Now header will be printed on plot and/or logger.
|
|---|
| 1401 | # Get header information and format it.
|
|---|
| 1402 | ssum=self._data.__str__()
|
|---|
| 1403 | # Print Observation header to the upper-left corner of plot
|
|---|
| 1404 | if self._headstring:
|
|---|
| 1405 | headstr = self._headstring
|
|---|
| 1406 | if extrastr != '': headstr[0]=extrastr+'\n'+headstr[0]
|
|---|
| 1407 | if selstr != '': headstr[2] += selstr
|
|---|
| 1408 | fontsize = fontsize or self._headsize
|
|---|
| 1409 | else:
|
|---|
| 1410 | headstr=[ssum[ssum.find('Observer:'):ssum.find('Flux Unit:')]]
|
|---|
| 1411 | headstr.append(ssum[ssum.find('Beams:'):ssum.find('Observer:')]
|
|---|
| 1412 | +ssum[ssum.find('Rest Freqs:'):ssum.find('Abcissa:')])
|
|---|
| 1413 | if extrastr != '': headstr[0]=extrastr+'\n'+headstr[0]
|
|---|
| 1414 | ssel='***Selections***\n'+(selstr+self._data.get_selection().__str__() or 'none')
|
|---|
| 1415 | headstr.append(ssel)
|
|---|
| 1416 | del ssel
|
|---|
| 1417 | fontsize = fontsize or 9
|
|---|
| 1418 | self._headsize = fontsize
|
|---|
| 1419 | self._headstring = headstr
|
|---|
| 1420 |
|
|---|
| 1421 | if plot:
|
|---|
| 1422 | self._plotter.hold()
|
|---|
| 1423 | nstcol=len(headstr)
|
|---|
| 1424 | for i in range(nstcol):
|
|---|
| 1425 | self._plotter.figure.text(0.03+float(i)/nstcol,0.98,
|
|---|
| 1426 | headstr[i],
|
|---|
| 1427 | horizontalalignment='left',
|
|---|
| 1428 | verticalalignment='top',
|
|---|
| 1429 | fontsize=fontsize)
|
|---|
| 1430 | import time
|
|---|
| 1431 | self._plotter.figure.text(0.99,0.0,
|
|---|
| 1432 | time.strftime("%a %d %b %Y %H:%M:%S %Z"),
|
|---|
| 1433 | horizontalalignment='right',
|
|---|
| 1434 | verticalalignment='bottom',fontsize=8)
|
|---|
| 1435 | self._plotter.release()
|
|---|
| 1436 | if logger:
|
|---|
| 1437 | sextra = headstr[0][0:headstr[0].find('Observer:')].rstrip('\n')
|
|---|
| 1438 | selstr = "Selections: "+(headstr[2].lstrip('***Selections***\n') or 'none')+"\n \n"
|
|---|
| 1439 |
|
|---|
| 1440 | asaplog.push("----------------\n Plot Summary\n----------------")
|
|---|
| 1441 | asaplog.push(sextra)
|
|---|
| 1442 | asaplog.push(ssum[ssum.find('Beams:'):ssum.find('Selection:')]\
|
|---|
| 1443 | + selstr + ssum[ssum.find('Scan Source'):])
|
|---|
| 1444 | del ssum, headstr
|
|---|
| 1445 |
|
|---|
| 1446 | # def clear_header(self):
|
|---|
| 1447 | # if not self._headstring or len(self._plotter.figure.texts) == 0:
|
|---|
| 1448 | # asaplog.push("No header has been plotted. Exit without any operation")
|
|---|
| 1449 | # asaplog.post("WARN")
|
|---|
| 1450 | # else:
|
|---|
| 1451 | # self._plotter.hold()
|
|---|
| 1452 | # for textobj in self._plotter.figure.texts:
|
|---|
| 1453 | # if textobj.get_text() in self._headstring:
|
|---|
| 1454 | # try:
|
|---|
| 1455 | # textobj.remove()
|
|---|
| 1456 | # except NotImplementedError:
|
|---|
| 1457 | # self._plotter.figure.texts.pop(self._plotter.figure.texts.index(textobj))
|
|---|
| 1458 | # self._plotter.release()
|
|---|
| 1459 | # self._reset_header()
|
|---|
