[470] | 1 | //#--------------------------------------------------------------------------- |
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[822] | 2 | //# STWriter.cc: ASAP class to write out single dish spectra. |
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[28] | 3 | //#--------------------------------------------------------------------------- |
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| 4 | //# Copyright (C) 2004 |
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[125] | 5 | //# ATNF |
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[28] | 6 | //# |
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| 7 | //# This program is free software; you can redistribute it and/or modify it |
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| 8 | //# under the terms of the GNU General Public License as published by the Free |
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| 9 | //# Software Foundation; either version 2 of the License, or (at your option) |
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| 10 | //# any later version. |
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| 11 | //# |
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| 12 | //# This program is distributed in the hope that it will be useful, but |
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| 13 | //# WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 14 | //# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General |
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| 15 | //# Public License for more details. |
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| 16 | //# |
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| 17 | //# You should have received a copy of the GNU General Public License along |
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| 18 | //# with this program; if not, write to the Free Software Foundation, Inc., |
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| 19 | //# 675 Massachusetts Ave, Cambridge, MA 02139, USA. |
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| 20 | //# |
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| 21 | //# Correspondence concerning this software should be addressed as follows: |
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| 22 | //# Internet email: Malte.Marquarding@csiro.au |
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| 23 | //# Postal address: Malte Marquarding, |
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| 24 | //# Australia Telescope National Facility, |
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| 25 | //# P.O. Box 76, |
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| 26 | //# Epping, NSW, 2121, |
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| 27 | //# AUSTRALIA |
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| 28 | //# |
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| 29 | //# $Id: STWriter.cpp 1757 2010-06-09 09:03:06Z KanaSugimoto $ |
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| 30 | //#--------------------------------------------------------------------------- |
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| 31 | |
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| 32 | #include <string> |
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| 33 | |
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[81] | 34 | #include <casa/aips.h> |
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[470] | 35 | #include <casa/Arrays/Array.h> |
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| 36 | #include <casa/Arrays/Vector.h> |
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[81] | 37 | #include <casa/BasicSL/Complex.h> |
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| 38 | #include <casa/Utilities/CountedPtr.h> |
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[470] | 39 | #include <casa/Utilities/Assert.h> |
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[28] | 40 | |
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[1603] | 41 | #include <atnf/PKSIO/PKSrecord.h> |
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[28] | 42 | #include <atnf/PKSIO/PKSMS2writer.h> |
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| 43 | #include <atnf/PKSIO/PKSSDwriter.h> |
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[1757] | 44 | #include <atnf/PKSIO/SrcType.h> |
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[28] | 45 | |
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[827] | 46 | #include <tables/Tables/Table.h> |
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| 47 | #include <tables/Tables/TableIter.h> |
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| 48 | #include <tables/Tables/TableRow.h> |
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[324] | 49 | #include <tables/Tables/ArrayColumn.h> |
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| 50 | |
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[1603] | 51 | #include "STFITSImageWriter.h" |
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[988] | 52 | #include "STAsciiWriter.h" |
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[901] | 53 | #include "STHeader.h" |
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[1757] | 54 | #include "STMath.h" |
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[324] | 55 | |
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[1757] | 56 | |
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[822] | 57 | #include "STWriter.h" |
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[28] | 58 | |
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[125] | 59 | using namespace casa; |
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[827] | 60 | namespace asap { |
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[28] | 61 | |
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[822] | 62 | STWriter::STWriter(const std::string &format) |
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[28] | 63 | { |
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[988] | 64 | format_ = format; |
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| 65 | String t(format_); |
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[450] | 66 | t.upcase(); |
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[1603] | 67 | if (t == "MS2") { |
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[988] | 68 | writer_ = new PKSMS2writer(); |
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[1603] | 69 | } else if (t == "SDFITS") { |
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[988] | 70 | writer_ = new PKSSDwriter(); |
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[1603] | 71 | } else if (t == "ASCII" || t == "FITS" || t == "CLASS") { |
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[988] | 72 | writer_ = 0; |
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[450] | 73 | } else { |
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[988] | 74 | throw (AipsError("Unrecognized export format")); |
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[28] | 75 | } |
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| 76 | } |
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| 77 | |
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[822] | 78 | STWriter::~STWriter() |
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[28] | 79 | { |
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[988] | 80 | if (writer_) { |
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| 81 | delete writer_; |
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[192] | 82 | } |
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[28] | 83 | } |
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| 84 | |
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[822] | 85 | Int STWriter::setFormat(const std::string &format) |
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[28] | 86 | { |
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[988] | 87 | if (format != format_) { |
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| 88 | if (writer_) delete writer_; |
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[450] | 89 | } |
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[827] | 90 | |
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[988] | 91 | format_ = format; |
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| 92 | String t(format_); |
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[450] | 93 | t.upcase(); |
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| 94 | if (t== "MS2") { |
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[988] | 95 | writer_ = new PKSMS2writer(); |
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[450] | 96 | } else if (t== "SDFITS") { |
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[988] | 97 | writer_ = new PKSSDwriter(); |
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[1603] | 98 | } else if (t == "ASCII" || t == "FITS" || t == "CLASS") { |
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[988] | 99 | writer_ = 0; |
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[450] | 100 | } else { |
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| 101 | throw (AipsError("Unrecognized Format")); |
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[28] | 102 | } |
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| 103 | return 0; |
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| 104 | } |
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| 105 | |
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[827] | 106 | Int STWriter::write(const CountedPtr<Scantable> in, |
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| 107 | const std::string &filename) |
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[28] | 108 | { |
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[1757] | 109 | // If we write out foreign formats we have to convert the frequency system |
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| 110 | // into the output frame, as we do everything related to SPectarlCoordinates |
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| 111 | // in asap on-the-fly. |
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[192] | 112 | |
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[1757] | 113 | CountedPtr<Scantable> inst = in; |
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| 114 | if (in->frequencies().getFrame(true) != in->frequencies().getFrame(false)) { |
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| 115 | STMath stm(false); |
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| 116 | inst = stm.frequencyAlign(in); |
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| 117 | } |
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| 118 | |
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[1280] | 119 | if (format_=="ASCII") { |
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| 120 | STAsciiWriter iw; |
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[1757] | 121 | // ASCII calls SpectralCoordinate::toWorld so no freqAlign use 'in' |
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[1280] | 122 | if (iw.write(*in, filename)) { |
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| 123 | return 0; |
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| 124 | } else { |
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| 125 | return 1; |
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| 126 | } |
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[1603] | 127 | } else if ( format_ == "FITS" || format_ == "CLASS") { |
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| 128 | STFITSImageWriter iw; |
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| 129 | if (format_ == "CLASS") { |
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| 130 | iw.setClass(True); |
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| 131 | } |
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[1757] | 132 | if (iw.write(*inst, filename)) { |
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[1603] | 133 | return 0; |
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| 134 | } |
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[199] | 135 | } |
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[192] | 136 | |
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[827] | 137 | // MS or SDFITS |
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[192] | 138 | |
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[28] | 139 | // Extract the header from the table. |
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[1387] | 140 | // this is a little different from what I have done |
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| 141 | // before. Need to check with the Offline User Test data |
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[1757] | 142 | STHeader hdr = inst->getHeader(); |
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[1060] | 143 | //const Int nPol = hdr.npol; |
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| 144 | //const Int nChan = hdr.nchan; |
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[1757] | 145 | std::vector<uint> ifs = inst->getIFNos(); |
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| 146 | int nIF = inst->nif();//ifs.size(); |
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[1060] | 147 | Vector<uInt> nPol(nIF),nChan(nIF); |
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| 148 | Vector<Bool> havexpol(nIF); |
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[1387] | 149 | String fluxUnit = hdr.fluxunit; |
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[1757] | 150 | fluxUnit.upcase(); |
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[1295] | 151 | nPol = 0;nChan = 0; havexpol = False; |
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[1305] | 152 | for (uint i=0;i<ifs.size();++i) { |
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[1757] | 153 | nPol(ifs[i]) = inst->npol(); |
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| 154 | nChan(ifs[i]) = inst->nchan(ifs[i]); |
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[1295] | 155 | havexpol(ifs[i]) = nPol(ifs[i]) > 2; |
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[1060] | 156 | } |
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[1757] | 157 | // Vector<String> obstypes(2); |
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| 158 | // obstypes(0) = "TR";//on |
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| 159 | // obstypes(1) = "RF TR";//off |
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| 160 | const Table table = inst->table(); |
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[28] | 161 | |
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[324] | 162 | |
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[28] | 163 | // Create the output file and write static data. |
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| 164 | Int status; |
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[1060] | 165 | status = writer_->create(String(filename), hdr.observer, hdr.project, |
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[1603] | 166 | hdr.antennaname, hdr.antennaposition, |
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| 167 | hdr.obstype, hdr.fluxunit, |
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| 168 | hdr.equinox, hdr.freqref, |
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| 169 | nChan, nPol, havexpol, False); |
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[996] | 170 | if ( status ) { |
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[717] | 171 | throw(AipsError("Failed to create output file")); |
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[28] | 172 | } |
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| 173 | |
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| 174 | Int count = 0; |
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[1603] | 175 | PKSrecord pksrec; |
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| 176 | pksrec.scanNo = 1; |
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[822] | 177 | // use spearate iterators to ensure renumbering of all numbers |
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| 178 | TableIterator scanit(table, "SCANNO"); |
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| 179 | while (!scanit.pastEnd() ) { |
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| 180 | Table stable = scanit.table(); |
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[988] | 181 | TableIterator beamit(stable, "BEAMNO"); |
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[1603] | 182 | pksrec.beamNo = 1; |
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[822] | 183 | while (!beamit.pastEnd() ) { |
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| 184 | Table btable = beamit.table(); |
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[1672] | 185 | //MDirection::ScalarColumn dirCol(btable, "DIRECTION"); |
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| 186 | //pksrec.direction = dirCol(0).getAngle("rad").getValue(); |
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[988] | 187 | TableIterator cycit(btable, "CYCLENO"); |
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[999] | 188 | ROArrayColumn<Double> srateCol(btable, "SCANRATE"); |
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[1603] | 189 | Vector<Double> sratedbl; |
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| 190 | srateCol.get(0, sratedbl); |
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| 191 | Vector<Float> srateflt(sratedbl.nelements()); |
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| 192 | convertArray(srateflt, sratedbl); |
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| 193 | //pksrec.scanRate = srateflt; |
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| 194 | pksrec.scanRate = sratedbl; |
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[999] | 195 | ROArrayColumn<Double> spmCol(btable, "SRCPROPERMOTION"); |
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[1603] | 196 | spmCol.get(0, pksrec.srcPM); |
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[999] | 197 | ROArrayColumn <Double> sdirCol(btable, "SRCDIRECTION"); |
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[1603] | 198 | sdirCol.get(0, pksrec.srcDir); |
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[999] | 199 | ROScalarColumn<Double> svelCol(btable, "SRCVELOCITY"); |
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[1603] | 200 | svelCol.get(0, pksrec.srcVel); |
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[1295] | 201 | ROScalarColumn<uInt> bCol(btable, "BEAMNO"); |
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[1603] | 202 | pksrec.beamNo = bCol(0)+1; |
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| 203 | pksrec.cycleNo = 1; |
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[988] | 204 | while (!cycit.pastEnd() ) { |
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| 205 | Table ctable = cycit.table(); |
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[1683] | 206 | TableIterator ifit(ctable, "IFNO", TableIterator::Ascending, TableIterator::HeapSort); |
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[1672] | 207 | MDirection::ScalarColumn dirCol(ctable, "DIRECTION"); |
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| 208 | pksrec.direction = dirCol(0).getAngle("rad").getValue(); |
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[1603] | 209 | pksrec.IFno = 1; |
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[988] | 210 | while (!ifit.pastEnd() ) { |
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| 211 | Table itable = ifit.table(); |
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| 212 | TableRow row(itable); |
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[822] | 213 | // use the first row to fill in all the "metadata" |
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[827] | 214 | const TableRecord& rec = row.get(0); |
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[988] | 215 | ROArrayColumn<Float> specCol(itable, "SPECTRA"); |
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[1603] | 216 | pksrec.IFno = rec.asuInt("IFNO")+1; |
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[822] | 217 | uInt nchan = specCol(0).nelements(); |
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[1603] | 218 | Double crval,crpix; |
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| 219 | //Vector<Double> restfreq; |
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[988] | 220 | Float tmp0,tmp1,tmp2,tmp3,tmp4; |
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[1446] | 221 | String tcalt; |
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| 222 | Vector<String> stmp0, stmp1; |
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[1757] | 223 | inst->frequencies().getEntry(crpix,crval, pksrec.freqInc, |
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[1603] | 224 | rec.asuInt("FREQ_ID")); |
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[1757] | 225 | inst->focus().getEntry(pksrec.parAngle, pksrec.focusAxi, pksrec.focusTan, |
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| 226 | pksrec.focusRot, tmp0,tmp1,tmp2,tmp3,tmp4, |
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| 227 | rec.asuInt("FOCUS_ID")); |
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| 228 | inst->molecules().getEntry(pksrec.restFreq,stmp0,stmp1, |
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[1603] | 229 | rec.asuInt("MOLECULE_ID")); |
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[1757] | 230 | inst->tcal().getEntry(pksrec.tcalTime, pksrec.tcal, |
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[1603] | 231 | rec.asuInt("TCAL_ID")); |
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[1757] | 232 | inst->weather().getEntry(pksrec.temperature, pksrec.pressure, |
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[1603] | 233 | pksrec.humidity, pksrec.windSpeed, |
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| 234 | pksrec.windAz, rec.asuInt("WEATHER_ID")); |
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[822] | 235 | Double pixel = Double(nchan/2); |
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[1603] | 236 | pksrec.refFreq = (pixel-crpix)*pksrec.freqInc + crval; |
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[822] | 237 | // ok, now we have nrows for the n polarizations in this table |
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[1603] | 238 | polConversion(pksrec.spectra, pksrec.flagged, pksrec.xPol, itable); |
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| 239 | pksrec.tsys = tsysFromTable(itable); |
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[822] | 240 | // dummy data |
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[1603] | 241 | uInt npol = pksrec.spectra.ncolumn(); |
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[988] | 242 | |
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[1603] | 243 | pksrec.mjd = rec.asDouble("TIME"); |
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| 244 | pksrec.interval = rec.asDouble("INTERVAL"); |
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| 245 | pksrec.fieldName = rec.asString("FIELDNAME"); |
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| 246 | pksrec.srcName = rec.asString("SRCNAME"); |
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[1757] | 247 | //pksrec.obsType = obstypes[rec.asInt("SRCTYPE")]; |
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| 248 | pksrec.obsType = getObsTypes( rec.asInt("SRCTYPE") ) ; |
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[1603] | 249 | pksrec.bandwidth = nchan * abs(pksrec.freqInc); |
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| 250 | pksrec.azimuth = rec.asFloat("AZIMUTH"); |
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| 251 | pksrec.elevation = rec.asFloat("ELEVATION"); |
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| 252 | pksrec.refBeam = rec.asInt("REFBEAMNO") + 1; |
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| 253 | pksrec.sigma.resize(npol); |
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| 254 | pksrec.sigma = 0.0f; |
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| 255 | pksrec.calFctr.resize(npol); |
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| 256 | pksrec.calFctr = 0.0f; |
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| 257 | pksrec.baseLin.resize(npol,2); |
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| 258 | pksrec.baseLin = 0.0f; |
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| 259 | pksrec.baseSub.resize(npol,9); |
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| 260 | pksrec.baseSub = 0.0f; |
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| 261 | pksrec.xCalFctr = 0.0; |
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[1661] | 262 | pksrec.flagrow = rec.asuInt("FLAGROW"); |
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[1603] | 263 | |
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| 264 | status = writer_->write(pksrec); |
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[996] | 265 | if ( status ) { |
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[988] | 266 | writer_->close(); |
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| 267 | throw(AipsError("STWriter: Failed to export Scantable.")); |
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[822] | 268 | } |
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[999] | 269 | ++count; |
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[1603] | 270 | //++pksrec.IFno; |
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[988] | 271 | ++ifit; |
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[470] | 272 | } |
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[1603] | 273 | ++pksrec.cycleNo; |
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[988] | 274 | ++cycit; |
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[28] | 275 | } |
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[1603] | 276 | //++pksrec.beamNo; |
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[822] | 277 | ++beamit; |
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[28] | 278 | } |
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[1603] | 279 | ++pksrec.scanNo; |
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[822] | 280 | ++scanit; |
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[28] | 281 | } |
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[717] | 282 | ostringstream oss; |
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[999] | 283 | oss << "STWriter: wrote " << count << " rows to " << filename; |
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[717] | 284 | pushLog(String(oss)); |
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[988] | 285 | writer_->close(); |
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[1387] | 286 | //if MS2 delete POINTING table exists and copy the one in the keyword |
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| 287 | if ( format_ == "MS2" ) { |
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| 288 | replacePtTab(table, filename); |
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[1603] | 289 | } |
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[28] | 290 | return 0; |
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| 291 | } |
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[470] | 292 | |
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[827] | 293 | Vector<Float> STWriter::tsysFromTable(const Table& tab) |
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| 294 | { |
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| 295 | ROArrayColumn<Float> tsysCol(tab, "TSYS"); |
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| 296 | Vector<Float> out(tab.nrow()); |
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| 297 | Vector<Float> tmp; |
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| 298 | for (uInt i=0; i<tab.nrow(); ++i) { |
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[988] | 299 | tmp.resize(); |
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[827] | 300 | tmp = tsysCol(i); |
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| 301 | out[i] = tmp[0]; |
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| 302 | } |
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[988] | 303 | return out; |
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[827] | 304 | } |
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| 305 | |
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| 306 | void STWriter::polConversion( Matrix< Float >& specs, Matrix< uChar >& flags, |
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[822] | 307 | Vector< Complex > & xpol, const Table & tab ) |
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| 308 | { |
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| 309 | String poltype = tab.keywordSet().asString("POLTYPE"); |
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[1757] | 310 | // Full stokes is not supported. Just allow stokes I |
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| 311 | if ( poltype == "stokes" && tab.nrow() != 1) { |
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[822] | 312 | String msg = "poltype = " + poltype + " not yet supported in output."; |
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[988] | 313 | throw(AipsError(msg)); |
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| 314 | } |
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[827] | 315 | ROArrayColumn<Float> specCol(tab, "SPECTRA"); |
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| 316 | ROArrayColumn<uChar> flagCol(tab, "FLAGTRA"); |
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[822] | 317 | uInt nchan = specCol(0).nelements(); |
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[988] | 318 | uInt ncol = (tab.nrow()==1 ? 1: 2 ); |
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| 319 | specs.resize(nchan, ncol); |
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| 320 | flags.resize(nchan, ncol); |
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[822] | 321 | // the linears |
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[988] | 322 | for (uInt i=0; i<ncol; ++i) { |
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[822] | 323 | specs.column(i) = specCol(i); |
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| 324 | flags.column(i) = flagCol(i); |
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| 325 | } |
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| 326 | // now the complex if exists |
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| 327 | Bool hasxpol = False; |
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| 328 | xpol.resize(); |
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[827] | 329 | if ( tab.nrow() == 4 ) { |
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[822] | 330 | hasxpol = True; |
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| 331 | xpol.resize(nchan); |
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| 332 | Vector<Float> reals, imags; |
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| 333 | reals = specCol(2); imags = specCol(3); |
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| 334 | for (uInt k=0; k < nchan; ++k) { |
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[827] | 335 | xpol[k] = Complex(reals[k], imags[k]); |
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[822] | 336 | } |
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| 337 | } |
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| 338 | } |
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[827] | 339 | |
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[1387] | 340 | // For writing MS data, if there is the reference to |
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| 341 | // original pointing table it replace it by it. |
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| 342 | void STWriter::replacePtTab (const Table& tab, const std::string& fname) |
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| 343 | { |
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| 344 | String oldPtTabName = fname; |
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| 345 | oldPtTabName.append("/POINTING"); |
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| 346 | if ( tab.keywordSet().isDefined("POINTING") ) { |
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| 347 | String PointingTab = tab.keywordSet().asString("POINTING"); |
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| 348 | if ( Table::isReadable(PointingTab) ) { |
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| 349 | Table newPtTab(PointingTab, Table::Old); |
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| 350 | newPtTab.copy(oldPtTabName, Table::New); |
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| 351 | ostringstream oss; |
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| 352 | oss << "STWriter: copied " <<PointingTab << " to " << fname; |
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| 353 | pushLog(String(oss)); |
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| 354 | } |
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| 355 | } |
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| 356 | } |
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[827] | 357 | |
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[1757] | 358 | // get obsType string from SRCTYPE value |
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| 359 | String STWriter::getObsTypes( Int srctype ) |
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| 360 | { |
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| 361 | String obsType ; |
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| 362 | switch( srctype ) { |
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| 363 | case Int(SrcType::PSON): |
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| 364 | obsType = "PSON" ; |
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| 365 | break ; |
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| 366 | case Int(SrcType::PSOFF): |
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| 367 | obsType = "PSOFF" ; |
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| 368 | break ; |
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| 369 | case Int(SrcType::NOD): |
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| 370 | obsType = "NOD" ; |
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| 371 | break ; |
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| 372 | case Int(SrcType::FSON): |
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| 373 | obsType = "FSON" ; |
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| 374 | break ; |
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| 375 | case Int(SrcType::FSOFF): |
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| 376 | obsType = "FSOFF" ; |
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| 377 | break ; |
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| 378 | case Int(SrcType::SKY): |
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| 379 | obsType = "SKY" ; |
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| 380 | break ; |
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| 381 | case Int(SrcType::HOT): |
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| 382 | obsType = "HOT" ; |
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| 383 | break ; |
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| 384 | case Int(SrcType::WARM): |
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| 385 | obsType = "WARM" ; |
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| 386 | break ; |
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| 387 | case Int(SrcType::COLD): |
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| 388 | obsType = "COLD" ; |
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| 389 | break ; |
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| 390 | case Int(SrcType::PONCAL): |
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| 391 | obsType = "PSON:CALON" ; |
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| 392 | break ; |
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| 393 | case Int(SrcType::POFFCAL): |
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| 394 | obsType = "PSOFF:CALON" ; |
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| 395 | break ; |
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| 396 | case Int(SrcType::NODCAL): |
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| 397 | obsType = "NOD:CALON" ; |
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| 398 | break ; |
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| 399 | case Int(SrcType::FONCAL): |
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| 400 | obsType = "FSON:CALON" ; |
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| 401 | break ; |
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| 402 | case Int(SrcType::FOFFCAL): |
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| 403 | obsType = "FSOFF:CALOFF" ; |
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| 404 | break ; |
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| 405 | case Int(SrcType::FSLO): |
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| 406 | obsType = "FSLO" ; |
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| 407 | break ; |
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| 408 | case Int(SrcType::FLOOFF): |
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| 409 | obsType = "FS:LOWER:OFF" ; |
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| 410 | break ; |
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| 411 | case Int(SrcType::FLOSKY): |
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| 412 | obsType = "FS:LOWER:SKY" ; |
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| 413 | break ; |
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| 414 | case Int(SrcType::FLOHOT): |
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| 415 | obsType = "FS:LOWER:HOT" ; |
---|
| 416 | break ; |
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| 417 | case Int(SrcType::FLOWARM): |
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| 418 | obsType = "FS:LOWER:WARM" ; |
---|
| 419 | break ; |
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| 420 | case Int(SrcType::FLOCOLD): |
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| 421 | obsType = "FS:LOWER:COLD" ; |
---|
| 422 | break ; |
---|
| 423 | case Int(SrcType::FSHI): |
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| 424 | obsType = "FSHI" ; |
---|
| 425 | break ; |
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| 426 | case Int(SrcType::FHIOFF): |
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| 427 | obsType = "FS:HIGHER:OFF" ; |
---|
| 428 | break ; |
---|
| 429 | case Int(SrcType::FHISKY): |
---|
| 430 | obsType = "FS:HIGHER:SKY" ; |
---|
| 431 | break ; |
---|
| 432 | case Int(SrcType::FHIHOT): |
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| 433 | obsType = "FS:HIGHER:HOT" ; |
---|
| 434 | break ; |
---|
| 435 | case Int(SrcType::FHIWARM): |
---|
| 436 | obsType = "FS:HIGHER:WARM" ; |
---|
| 437 | break ; |
---|
| 438 | case Int(SrcType::FHICOLD): |
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| 439 | obsType = "FS:HIGHER:COLD" ; |
---|
| 440 | break ; |
---|
| 441 | default: |
---|
| 442 | obsType = "NOTYPE" ; |
---|
| 443 | } |
---|
| 444 | |
---|
| 445 | return obsType ; |
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[827] | 446 | } |
---|
[1757] | 447 | |
---|
| 448 | } |
---|