| [947] | 1 | from asap import rcParams, print_log, selector
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| [1614] | 2 | from asap import asaplog
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| [1153] | 3 | import matplotlib.axes
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| [1317] | 4 | import re
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| [203] | 5 |
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| 6 | class asapplotter:
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| [226] | 7 | """
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| 8 | The ASAP plotter.
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| 9 | By default the plotter is set up to plot polarisations
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| 10 | 'colour stacked' and scantables across panels.
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| 11 | Note:
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| 12 | Currenly it only plots 'spectra' not Tsys or
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| 13 | other variables.
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| 14 | """
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| [734] | 15 | def __init__(self, visible=None):
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| 16 | self._visible = rcParams['plotter.gui']
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| 17 | if visible is not None:
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| 18 | self._visible = visible
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| [710] | 19 | self._plotter = self._newplotter()
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| 20 |
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| [554] | 21 | self._panelling = None
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| 22 | self._stacking = None
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| 23 | self.set_panelling()
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| 24 | self.set_stacking()
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| [377] | 25 | self._rows = None
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| 26 | self._cols = None
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| [203] | 27 | self._autoplot = False
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| [525] | 28 | self._minmaxx = None
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| 29 | self._minmaxy = None
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| [710] | 30 | self._datamask = None
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| [203] | 31 | self._data = None
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| [607] | 32 | self._lmap = None
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| [226] | 33 | self._title = None
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| [257] | 34 | self._ordinate = None
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| 35 | self._abcissa = None
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| [709] | 36 | self._abcunit = None
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| [920] | 37 | self._usermask = []
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| 38 | self._maskselection = None
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| 39 | self._selection = selector()
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| [1023] | 40 | self._hist = rcParams['plotter.histogram']
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| 41 |
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| [920] | 42 | def _translate(self, instr):
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| 43 | keys = "s b i p t".split()
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| 44 | if isinstance(instr, str):
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| 45 | for key in keys:
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| 46 | if instr.lower().startswith(key):
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| 47 | return key
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| 48 | return None
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| 49 |
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| [710] | 50 | def _newplotter(self):
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| 51 | if self._visible:
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| 52 | from asap.asaplotgui import asaplotgui as asaplot
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| 53 | else:
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| 54 | from asap.asaplot import asaplot
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| 55 | return asaplot()
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| 56 |
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| 57 |
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| [935] | 58 | def plot(self, scan=None):
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| [203] | 59 | """
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| [920] | 60 | Plot a scantable.
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| [203] | 61 | Parameters:
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| [920] | 62 | scan: a scantable
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| [203] | 63 | Note:
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| [920] | 64 | If a scantable was specified in a previous call
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| [203] | 65 | to plot, no argument has to be given to 'replot'
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| [920] | 66 | NO checking is done that the abcissas of the scantable
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| [203] | 67 | are consistent e.g. all 'channel' or all 'velocity' etc.
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| 68 | """
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| [710] | 69 | if self._plotter.is_dead:
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| 70 | self._plotter = self._newplotter()
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| [600] | 71 | self._plotter.hold()
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| [203] | 72 | self._plotter.clear()
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| [920] | 73 | from asap import scantable
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| [935] | 74 | if not self._data and not scan:
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| [1101] | 75 | msg = "Input is not a scantable"
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| 76 | if rcParams['verbose']:
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| [1612] | 77 | #print msg
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| [1614] | 78 | asaplog.push( msg )
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| 79 | print_log( 'ERROR' )
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| [1101] | 80 | return
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| 81 | raise TypeError(msg)
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| [920] | 82 | if isinstance(scan, scantable):
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| [709] | 83 | if self._data is not None:
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| [920] | 84 | if scan != self._data:
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| 85 | self._data = scan
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| [710] | 86 | # reset
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| 87 | self._reset()
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| [525] | 88 | else:
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| [920] | 89 | self._data = scan
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| [710] | 90 | self._reset()
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| [709] | 91 | # ranges become invalid when unit changes
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| [935] | 92 | if self._abcunit and self._abcunit != self._data.get_unit():
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| [709] | 93 | self._minmaxx = None
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| 94 | self._minmaxy = None
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| [920] | 95 | self._abcunit = self._data.get_unit()
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| [710] | 96 | self._datamask = None
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| [920] | 97 | self._plot(self._data)
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| [709] | 98 | if self._minmaxy is not None:
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| 99 | self._plotter.set_limits(ylim=self._minmaxy)
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| [203] | 100 | self._plotter.release()
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| [1153] | 101 | self._plotter.tidy()
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| 102 | self._plotter.show(hardrefresh=False)
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| [753] | 103 | print_log()
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| [203] | 104 | return
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| 105 |
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| [1153] | 106 |
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| 107 | # forwards to matplotlib axes
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| 108 | def text(self, *args, **kwargs):
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| 109 | self._axes_callback("text", *args, **kwargs)
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| [1358] | 110 | text.__doc__ = matplotlib.axes.Axes.text.__doc__
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| [1153] | 111 | def arrow(self, *args, **kwargs):
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| 112 | self._axes_callback("arrow", *args, **kwargs)
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| [1358] | 113 | arrow.__doc__ = matplotlib.axes.Axes.arrow.__doc__
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| [1153] | 114 | def axvline(self, *args, **kwargs):
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| 115 | self._axes_callback("axvline", *args, **kwargs)
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| [1358] | 116 | axvline.__doc__ = matplotlib.axes.Axes.axvline.__doc__
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| [1153] | 117 | def axhline(self, *args, **kwargs):
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| 118 | self._axes_callback("axhline", *args, **kwargs)
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| [1358] | 119 | axhline.__doc__ = matplotlib.axes.Axes.axhline.__doc__
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| [1153] | 120 | def axvspan(self, *args, **kwargs):
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| 121 | self._axes_callback("axvspan", *args, **kwargs)
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| 122 | # hack to preventy mpl from redrawing the patch
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| 123 | # it seem to convert the patch into lines on every draw.
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| 124 | # This doesn't happen in a test script???
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| 125 | del self._plotter.axes.patches[-1]
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| [1358] | 126 | axvspan.__doc__ = matplotlib.axes.Axes.axvspan.__doc__
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| [1232] | 127 |
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| [1153] | 128 | def axhspan(self, *args, **kwargs):
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| [1232] | 129 | self._axes_callback("axhspan", *args, **kwargs)
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| [1153] | 130 | # hack to preventy mpl from redrawing the patch
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| 131 | # it seem to convert the patch into lines on every draw.
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| 132 | # This doesn't happen in a test script???
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| 133 | del self._plotter.axes.patches[-1]
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| [1358] | 134 | axhspan.__doc__ = matplotlib.axes.Axes.axhspan.__doc__
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| [1153] | 135 |
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| 136 | def _axes_callback(self, axesfunc, *args, **kwargs):
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| 137 | panel = 0
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| 138 | if kwargs.has_key("panel"):
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| 139 | panel = kwargs.pop("panel")
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| 140 | coords = None
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| 141 | if kwargs.has_key("coords"):
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| 142 | coords = kwargs.pop("coords")
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| 143 | if coords.lower() == 'world':
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| 144 | kwargs["transform"] = self._plotter.axes.transData
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| 145 | elif coords.lower() == 'relative':
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| 146 | kwargs["transform"] = self._plotter.axes.transAxes
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| 147 | self._plotter.subplot(panel)
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| 148 | self._plotter.axes.set_autoscale_on(False)
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| 149 | getattr(self._plotter.axes, axesfunc)(*args, **kwargs)
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| 150 | self._plotter.show(False)
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| 151 | self._plotter.axes.set_autoscale_on(True)
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| 152 | # end matplotlib.axes fowarding functions
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| 153 |
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| [226] | 154 | def set_mode(self, stacking=None, panelling=None):
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| [203] | 155 | """
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| [377] | 156 | Set the plots look and feel, i.e. what you want to see on the plot.
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| [203] | 157 | Parameters:
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| 158 | stacking: tell the plotter which variable to plot
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| [1217] | 159 | as line colour overlays (default 'pol')
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| [203] | 160 | panelling: tell the plotter which variable to plot
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| 161 | across multiple panels (default 'scan'
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| 162 | Note:
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| 163 | Valid modes are:
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| 164 | 'beam' 'Beam' 'b': Beams
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| 165 | 'if' 'IF' 'i': IFs
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| 166 | 'pol' 'Pol' 'p': Polarisations
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| 167 | 'scan' 'Scan' 's': Scans
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| 168 | 'time' 'Time' 't': Times
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| 169 | """
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| [753] | 170 | msg = "Invalid mode"
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| 171 | if not self.set_panelling(panelling) or \
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| 172 | not self.set_stacking(stacking):
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| 173 | if rcParams['verbose']:
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| [1612] | 174 | #print msg
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| [1614] | 175 | asaplog.push( msg )
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| 176 | print_log( 'ERROR' )
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| [753] | 177 | return
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| 178 | else:
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| 179 | raise TypeError(msg)
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| [920] | 180 | if self._data: self.plot(self._data)
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| [203] | 181 | return
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| 182 |
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| [554] | 183 | def set_panelling(self, what=None):
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| 184 | mode = what
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| 185 | if mode is None:
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| 186 | mode = rcParams['plotter.panelling']
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| 187 | md = self._translate(mode)
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| [203] | 188 | if md:
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| [554] | 189 | self._panelling = md
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| [226] | 190 | self._title = None
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| [203] | 191 | return True
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| 192 | return False
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| 193 |
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| [377] | 194 | def set_layout(self,rows=None,cols=None):
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| 195 | """
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| 196 | Set the multi-panel layout, i.e. how many rows and columns plots
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| 197 | are visible.
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| 198 | Parameters:
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| 199 | rows: The number of rows of plots
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| 200 | cols: The number of columns of plots
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| 201 | Note:
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| 202 | If no argument is given, the potter reverts to its auto-plot
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| 203 | behaviour.
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| 204 | """
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| 205 | self._rows = rows
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| 206 | self._cols = cols
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| [920] | 207 | if self._data: self.plot(self._data)
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| [377] | 208 | return
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| 209 |
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| [709] | 210 | def set_stacking(self, what=None):
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| [554] | 211 | mode = what
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| [709] | 212 | if mode is None:
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| 213 | mode = rcParams['plotter.stacking']
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| [554] | 214 | md = self._translate(mode)
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| [203] | 215 | if md:
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| 216 | self._stacking = md
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| [226] | 217 | self._lmap = None
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| [203] | 218 | return True
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| 219 | return False
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| 220 |
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| [525] | 221 | def set_range(self,xstart=None,xend=None,ystart=None,yend=None):
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| [203] | 222 | """
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| 223 | Set the range of interest on the abcissa of the plot
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| 224 | Parameters:
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| [525] | 225 | [x,y]start,[x,y]end: The start and end points of the 'zoom' window
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| [203] | 226 | Note:
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| 227 | These become non-sensical when the unit changes.
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| 228 | use plotter.set_range() without parameters to reset
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| 229 |
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| 230 | """
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| [525] | 231 | if xstart is None and xend is None:
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| 232 | self._minmaxx = None
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| [600] | 233 | else:
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| 234 | self._minmaxx = [xstart,xend]
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| [525] | 235 | if ystart is None and yend is None:
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| 236 | self._minmaxy = None
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| [600] | 237 | else:
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| [709] | 238 | self._minmaxy = [ystart,yend]
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| [920] | 239 | if self._data: self.plot(self._data)
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| [203] | 240 | return
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| [709] | 241 |
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| [1101] | 242 | def set_legend(self, mp=None, fontsize = None, mode = 0):
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| [203] | 243 | """
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| 244 | Specify a mapping for the legend instead of using the default
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| 245 | indices:
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| 246 | Parameters:
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| [1101] | 247 | mp: a list of 'strings'. This should have the same length
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| 248 | as the number of elements on the legend and then maps
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| 249 | to the indeces in order. It is possible to uses latex
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| 250 | math expression. These have to be enclosed in r'',
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| 251 | e.g. r'$x^{2}$'
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| 252 | fontsize: The font size of the label (default None)
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| 253 | mode: where to display the legend
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| 254 | Any other value for loc else disables the legend:
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| [1096] | 255 | 0: auto
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| 256 | 1: upper right
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| 257 | 2: upper left
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| 258 | 3: lower left
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| 259 | 4: lower right
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| 260 | 5: right
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| 261 | 6: center left
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| 262 | 7: center right
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| 263 | 8: lower center
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| 264 | 9: upper center
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| 265 | 10: center
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| [203] | 266 |
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| 267 | Example:
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| [485] | 268 | If the data has two IFs/rest frequencies with index 0 and 1
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| [203] | 269 | for CO and SiO:
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| 270 | plotter.set_stacking('i')
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| [710] | 271 | plotter.set_legend(['CO','SiO'])
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| [203] | 272 | plotter.plot()
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| [710] | 273 | plotter.set_legend([r'$^{12}CO$', r'SiO'])
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| [203] | 274 | """
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| 275 | self._lmap = mp
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| [1096] | 276 | self._plotter.legend(mode)
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| [1101] | 277 | if isinstance(fontsize, int):
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| 278 | from matplotlib import rc as rcp
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| 279 | rcp('legend', fontsize=fontsize)
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| [1096] | 280 | if self._data:
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| 281 | self.plot(self._data)
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| [226] | 282 | return
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| 283 |
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| [1101] | 284 | def set_title(self, title=None, fontsize=None):
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| [710] | 285 | """
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| 286 | Set the title of the plot. If multiple panels are plotted,
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| 287 | multiple titles have to be specified.
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| 288 | Example:
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| 289 | # two panels are visible on the plotter
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| 290 | plotter.set_title(["First Panel","Second Panel"])
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| 291 | """
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| [226] | 292 | self._title = title
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| [1101] | 293 | if isinstance(fontsize, int):
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| 294 | from matplotlib import rc as rcp
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| 295 | rcp('axes', titlesize=fontsize)
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| [920] | 296 | if self._data: self.plot(self._data)
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| [226] | 297 | return
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| 298 |
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| [1101] | 299 | def set_ordinate(self, ordinate=None, fontsize=None):
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| [710] | 300 | """
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| 301 | Set the y-axis label of the plot. If multiple panels are plotted,
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| 302 | multiple labels have to be specified.
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| [1021] | 303 | Parameters:
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| 304 | ordinate: a list of ordinate labels. None (default) let
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| 305 | data determine the labels
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| [710] | 306 | Example:
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| 307 | # two panels are visible on the plotter
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| 308 | plotter.set_ordinate(["First Y-Axis","Second Y-Axis"])
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| 309 | """
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| [257] | 310 | self._ordinate = ordinate
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| [1101] | 311 | if isinstance(fontsize, int):
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| 312 | from matplotlib import rc as rcp
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| 313 | rcp('axes', labelsize=fontsize)
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| 314 | rcp('ytick', labelsize=fontsize)
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| [920] | 315 | if self._data: self.plot(self._data)
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| [257] | 316 | return
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| 317 |
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| [1101] | 318 | def set_abcissa(self, abcissa=None, fontsize=None):
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| [710] | 319 | """
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| 320 | Set the x-axis label of the plot. If multiple panels are plotted,
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| 321 | multiple labels have to be specified.
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| [1021] | 322 | Parameters:
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| 323 | abcissa: a list of abcissa labels. None (default) let
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| 324 | data determine the labels
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| [710] | 325 | Example:
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| 326 | # two panels are visible on the plotter
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| 327 | plotter.set_ordinate(["First X-Axis","Second X-Axis"])
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| 328 | """
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| [257] | 329 | self._abcissa = abcissa
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| [1101] | 330 | if isinstance(fontsize, int):
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| 331 | from matplotlib import rc as rcp
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| 332 | rcp('axes', labelsize=fontsize)
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| 333 | rcp('xtick', labelsize=fontsize)
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| [920] | 334 | if self._data: self.plot(self._data)
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| [257] | 335 | return
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| 336 |
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| [1217] | 337 | def set_colors(self, colmap):
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| [377] | 338 | """
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| [1217] | 339 | Set the colours to be used. The plotter will cycle through
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| 340 | these colours when lines are overlaid (stacking mode).
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| [1021] | 341 | Parameters:
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| [1217] | 342 | colmap: a list of colour names
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| [710] | 343 | Example:
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| 344 | plotter.set_colors("red green blue")
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| 345 | # If for example four lines are overlaid e.g I Q U V
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| 346 | # 'I' will be 'red', 'Q' will be 'green', U will be 'blue'
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| 347 | # and 'V' will be 'red' again.
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| 348 | """
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| [1217] | 349 | if isinstance(colmap,str):
|
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| 350 | colmap = colmap.split()
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| 351 | self._plotter.palette(0, colormap=colmap)
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| [920] | 352 | if self._data: self.plot(self._data)
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| [710] | 353 |
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| [1217] | 354 | # alias for english speakers
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| 355 | set_colours = set_colors
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| 356 |
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| [1101] | 357 | def set_histogram(self, hist=True, linewidth=None):
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| [1021] | 358 | """
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|---|
| 359 | Enable/Disable histogram-like plotting.
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|---|
| 360 | Parameters:
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| 361 | hist: True (default) or False. The fisrt default
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|---|
| 362 | is taken from the .asaprc setting
|
|---|
| 363 | plotter.histogram
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|---|
| 364 | """
|
|---|
| [1023] | 365 | self._hist = hist
|
|---|
| [1101] | 366 | if isinstance(linewidth, float) or isinstance(linewidth, int):
|
|---|
| 367 | from matplotlib import rc as rcp
|
|---|
| 368 | rcp('lines', linewidth=linewidth)
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|---|
| [1021] | 369 | if self._data: self.plot(self._data)
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|---|
| [1023] | 370 |
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| [1101] | 371 | def set_linestyles(self, linestyles=None, linewidth=None):
|
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| [710] | 372 | """
|
|---|
| [734] | 373 | Set the linestyles to be used. The plotter will cycle through
|
|---|
| 374 | these linestyles when lines are overlaid (stacking mode) AND
|
|---|
| 375 | only one color has been set.
|
|---|
| [710] | 376 | Parameters:
|
|---|
| 377 | linestyles: a list of linestyles to use.
|
|---|
| 378 | 'line', 'dashed', 'dotted', 'dashdot',
|
|---|
| 379 | 'dashdotdot' and 'dashdashdot' are
|
|---|
| 380 | possible
|
|---|
| 381 |
|
|---|
| 382 | Example:
|
|---|
| 383 | plotter.set_colors("black")
|
|---|
| 384 | plotter.set_linestyles("line dashed dotted dashdot")
|
|---|
| 385 | # If for example four lines are overlaid e.g I Q U V
|
|---|
| 386 | # 'I' will be 'solid', 'Q' will be 'dashed',
|
|---|
| 387 | # U will be 'dotted' and 'V' will be 'dashdot'.
|
|---|
| 388 | """
|
|---|
| 389 | if isinstance(linestyles,str):
|
|---|
| 390 | linestyles = linestyles.split()
|
|---|
| 391 | self._plotter.palette(color=0,linestyle=0,linestyles=linestyles)
|
|---|
| [1101] | 392 | if isinstance(linewidth, float) or isinstance(linewidth, int):
|
|---|
| 393 | from matplotlib import rc as rcp
|
|---|
| 394 | rcp('lines', linewidth=linewidth)
|
|---|
| [920] | 395 | if self._data: self.plot(self._data)
|
|---|
| [710] | 396 |
|
|---|
| [1101] | 397 | def set_font(self, family=None, style=None, weight=None, size=None):
|
|---|
| 398 | """
|
|---|
| 399 | Set font properties.
|
|---|
| 400 | Parameters:
|
|---|
| 401 | family: one of 'sans-serif', 'serif', 'cursive', 'fantasy', 'monospace'
|
|---|
| 402 | style: one of 'normal' (or 'roman'), 'italic' or 'oblique'
|
|---|
| 403 | weight: one of 'normal or 'bold'
|
|---|
| 404 | size: the 'general' font size, individual elements can be adjusted
|
|---|
| 405 | seperately
|
|---|
| 406 | """
|
|---|
| 407 | from matplotlib import rc as rcp
|
|---|
| 408 | if isinstance(family, str):
|
|---|
| 409 | rcp('font', family=family)
|
|---|
| 410 | if isinstance(style, str):
|
|---|
| 411 | rcp('font', style=style)
|
|---|
| 412 | if isinstance(weight, str):
|
|---|
| 413 | rcp('font', weight=weight)
|
|---|
| 414 | if isinstance(size, float) or isinstance(size, int):
|
|---|
| 415 | rcp('font', size=size)
|
|---|
| 416 | if self._data: self.plot(self._data)
|
|---|
| 417 |
|
|---|
| [1259] | 418 | def plot_lines(self, linecat=None, doppler=0.0, deltachan=10, rotate=90.0,
|
|---|
| [1146] | 419 | location=None):
|
|---|
| 420 | """
|
|---|
| [1158] | 421 | Plot a line catalog.
|
|---|
| 422 | Parameters:
|
|---|
| 423 | linecat: the linecatalog to plot
|
|---|
| [1168] | 424 | doppler: the velocity shift to apply to the frequencies
|
|---|
| [1158] | 425 | deltachan: the number of channels to include each side of the
|
|---|
| 426 | line to determine a local maximum/minimum
|
|---|
| [1259] | 427 | rotate: the rotation (in degrees) )for the text label (default 90.0)
|
|---|
| [1158] | 428 | location: the location of the line annotation from the 'top',
|
|---|
| 429 | 'bottom' or alternate (None - the default)
|
|---|
| [1165] | 430 | Notes:
|
|---|
| 431 | If the spectrum is flagged no line will be drawn in that location.
|
|---|
| [1146] | 432 | """
|
|---|
| [1259] | 433 | if not self._data:
|
|---|
| 434 | raise RuntimeError("No scantable has been plotted yet.")
|
|---|
| [1146] | 435 | from asap._asap import linecatalog
|
|---|
| [1259] | 436 | if not isinstance(linecat, linecatalog):
|
|---|
| 437 | raise ValueError("'linecat' isn't of type linecatalog.")
|
|---|
| 438 | if not self._data.get_unit().endswith("Hz"):
|
|---|
| 439 | raise RuntimeError("Can only overlay linecatalogs when data is in frequency.")
|
|---|
| [1153] | 440 | from matplotlib.numerix import ma
|
|---|
| [1146] | 441 | for j in range(len(self._plotter.subplots)):
|
|---|
| 442 | self._plotter.subplot(j)
|
|---|
| 443 | lims = self._plotter.axes.get_xlim()
|
|---|
| [1153] | 444 | for row in range(linecat.nrow()):
|
|---|
| [1259] | 445 | # get_frequency returns MHz
|
|---|
| 446 | base = { "GHz": 1000.0, "MHz": 1.0, "Hz": 1.0e-6 }
|
|---|
| 447 | restf = linecat.get_frequency(row)/base[self._data.get_unit()]
|
|---|
| [1165] | 448 | c = 299792.458
|
|---|
| [1174] | 449 | freq = restf*(1.0-doppler/c)
|
|---|
| [1146] | 450 | if lims[0] < freq < lims[1]:
|
|---|
| 451 | if location is None:
|
|---|
| 452 | loc = 'bottom'
|
|---|
| [1153] | 453 | if row%2: loc='top'
|
|---|
| [1146] | 454 | else: loc = location
|
|---|
| [1153] | 455 | maxys = []
|
|---|
| 456 | for line in self._plotter.axes.lines:
|
|---|
| 457 | v = line._x
|
|---|
| 458 | asc = v[0] < v[-1]
|
|---|
| 459 |
|
|---|
| 460 | idx = None
|
|---|
| 461 | if not asc:
|
|---|
| 462 | if v[len(v)-1] <= freq <= v[0]:
|
|---|
| 463 | i = len(v)-1
|
|---|
| 464 | while i>=0 and v[i] < freq:
|
|---|
| 465 | idx = i
|
|---|
| 466 | i-=1
|
|---|
| 467 | else:
|
|---|
| 468 | if v[0] <= freq <= v[len(v)-1]:
|
|---|
| 469 | i = 0
|
|---|
| 470 | while i<len(v) and v[i] < freq:
|
|---|
| 471 | idx = i
|
|---|
| 472 | i+=1
|
|---|
| 473 | if idx is not None:
|
|---|
| 474 | lower = idx - deltachan
|
|---|
| 475 | upper = idx + deltachan
|
|---|
| 476 | if lower < 0: lower = 0
|
|---|
| 477 | if upper > len(v): upper = len(v)
|
|---|
| 478 | s = slice(lower, upper)
|
|---|
| [1167] | 479 | y = line._y[s]
|
|---|
| [1165] | 480 | maxy = ma.maximum(y)
|
|---|
| 481 | if isinstance( maxy, float):
|
|---|
| 482 | maxys.append(maxy)
|
|---|
| [1164] | 483 | if len(maxys):
|
|---|
| 484 | peak = max(maxys)
|
|---|
| [1165] | 485 | if peak > self._plotter.axes.get_ylim()[1]:
|
|---|
| 486 | loc = 'bottom'
|
|---|
| [1164] | 487 | else:
|
|---|
| 488 | continue
|
|---|
| [1157] | 489 | self._plotter.vline_with_label(freq, peak,
|
|---|
| 490 | linecat.get_name(row),
|
|---|
| 491 | location=loc, rotate=rotate)
|
|---|
| [1153] | 492 | self._plotter.show(hardrefresh=False)
|
|---|
| [1146] | 493 |
|
|---|
| [1153] | 494 |
|
|---|
| [710] | 495 | def save(self, filename=None, orientation=None, dpi=None):
|
|---|
| 496 | """
|
|---|
| [377] | 497 | Save the plot to a file. The know formats are 'png', 'ps', 'eps'.
|
|---|
| 498 | Parameters:
|
|---|
| 499 | filename: The name of the output file. This is optional
|
|---|
| 500 | and autodetects the image format from the file
|
|---|
| 501 | suffix. If non filename is specified a file
|
|---|
| 502 | called 'yyyymmdd_hhmmss.png' is created in the
|
|---|
| 503 | current directory.
|
|---|
| [709] | 504 | orientation: optional parameter for postscript only (not eps).
|
|---|
| 505 | 'landscape', 'portrait' or None (default) are valid.
|
|---|
| 506 | If None is choosen for 'ps' output, the plot is
|
|---|
| 507 | automatically oriented to fill the page.
|
|---|
| [710] | 508 | dpi: The dpi of the output non-ps plot
|
|---|
| [377] | 509 | """
|
|---|
| [709] | 510 | self._plotter.save(filename,orientation,dpi)
|
|---|
| [377] | 511 | return
|
|---|
| [709] | 512 |
|
|---|
| [257] | 513 |
|
|---|
| [920] | 514 | def set_mask(self, mask=None, selection=None):
|
|---|
| [525] | 515 | """
|
|---|
| [734] | 516 | Set a plotting mask for a specific polarization.
|
|---|
| 517 | This is useful for masking out "noise" Pangle outside a source.
|
|---|
| 518 | Parameters:
|
|---|
| [920] | 519 | mask: a mask from scantable.create_mask
|
|---|
| 520 | selection: the spectra to apply the mask to.
|
|---|
| [734] | 521 | Example:
|
|---|
| [920] | 522 | select = selector()
|
|---|
| 523 | select.setpolstrings("Pangle")
|
|---|
| 524 | plotter.set_mask(mymask, select)
|
|---|
| [734] | 525 | """
|
|---|
| [710] | 526 | if not self._data:
|
|---|
| [920] | 527 | msg = "Can only set mask after a first call to plot()"
|
|---|
| [753] | 528 | if rcParams['verbose']:
|
|---|
| [1612] | 529 | #print msg
|
|---|
| [1614] | 530 | asaplog.push( msg )
|
|---|
| 531 | print_log( 'ERROR' )
|
|---|
| [762] | 532 | return
|
|---|
| [753] | 533 | else:
|
|---|
| [762] | 534 | raise RuntimeError(msg)
|
|---|
| [920] | 535 | if len(mask):
|
|---|
| 536 | if isinstance(mask, list) or isinstance(mask, tuple):
|
|---|
| 537 | self._usermask = array(mask)
|
|---|
| [710] | 538 | else:
|
|---|
| [920] | 539 | self._usermask = mask
|
|---|
| 540 | if mask is None and selection is None:
|
|---|
| 541 | self._usermask = []
|
|---|
| 542 | self._maskselection = None
|
|---|
| 543 | if isinstance(selection, selector):
|
|---|
| [947] | 544 | self._maskselection = {'b': selection.get_beams(),
|
|---|
| 545 | 's': selection.get_scans(),
|
|---|
| 546 | 'i': selection.get_ifs(),
|
|---|
| 547 | 'p': selection.get_pols(),
|
|---|
| [920] | 548 | 't': [] }
|
|---|
| [710] | 549 | else:
|
|---|
| [920] | 550 | self._maskselection = None
|
|---|
| 551 | self.plot(self._data)
|
|---|
| [710] | 552 |
|
|---|
| [709] | 553 | def _slice_indeces(self, data):
|
|---|
| 554 | mn = self._minmaxx[0]
|
|---|
| 555 | mx = self._minmaxx[1]
|
|---|
| 556 | asc = data[0] < data[-1]
|
|---|
| 557 | start=0
|
|---|
| 558 | end = len(data)-1
|
|---|
| 559 | inc = 1
|
|---|
| 560 | if not asc:
|
|---|
| 561 | start = len(data)-1
|
|---|
| 562 | end = 0
|
|---|
| 563 | inc = -1
|
|---|
| 564 | # find min index
|
|---|
| [1562] | 565 | #while start > 0 and data[start] < mn:
|
|---|
| 566 | # start+= inc
|
|---|
| 567 | minind=start
|
|---|
| 568 | for ind in xrange(start,end+inc,inc):
|
|---|
| 569 | if data[ind] > mn: break
|
|---|
| 570 | minind=ind
|
|---|
| [709] | 571 | # find max index
|
|---|
| [1562] | 572 | #while end > 0 and data[end] > mx:
|
|---|
| 573 | # end-=inc
|
|---|
| 574 | #if end > 0: end +=1
|
|---|
| 575 | maxind=end
|
|---|
| 576 | for ind in xrange(end,start-inc,-inc):
|
|---|
| 577 | if data[ind] < mx: break
|
|---|
| 578 | maxind=ind
|
|---|
| 579 | start=minind
|
|---|
| 580 | end=maxind
|
|---|
| [709] | 581 | if start > end:
|
|---|
| [1562] | 582 | return end,start+1
|
|---|
| 583 | elif start < end:
|
|---|
| 584 | return start,end+1
|
|---|
| 585 | else:
|
|---|
| 586 | return start,end
|
|---|
| [709] | 587 |
|
|---|
| [710] | 588 | def _reset(self):
|
|---|
| [920] | 589 | self._usermask = []
|
|---|
| [710] | 590 | self._usermaskspectra = None
|
|---|
| [920] | 591 | self.set_selection(None, False)
|
|---|
| 592 |
|
|---|
| 593 | def _plot(self, scan):
|
|---|
| [947] | 594 | savesel = scan.get_selection()
|
|---|
| 595 | sel = savesel + self._selection
|
|---|
| 596 | d0 = {'s': 'SCANNO', 'b': 'BEAMNO', 'i':'IFNO',
|
|---|
| 597 | 'p': 'POLNO', 'c': 'CYCLENO', 't' : 'TIME' }
|
|---|
| 598 | order = [d0[self._panelling],d0[self._stacking]]
|
|---|
| 599 | sel.set_order(order)
|
|---|
| 600 | scan.set_selection(sel)
|
|---|
| [920] | 601 | d = {'b': scan.getbeam, 's': scan.getscan,
|
|---|
| 602 | 'i': scan.getif, 'p': scan.getpol, 't': scan._gettime }
|
|---|
| 603 |
|
|---|
| [1148] | 604 | polmodes = dict(zip(self._selection.get_pols(),
|
|---|
| 605 | self._selection.get_poltypes()))
|
|---|
| 606 | # this returns either a tuple of numbers or a length (ncycles)
|
|---|
| 607 | # convert this into lengths
|
|---|
| 608 | n0,nstack0 = self._get_selected_n(scan)
|
|---|
| 609 | if isinstance(n0, int): n = n0
|
|---|
| [1175] | 610 | else: n = len(n0)
|
|---|
| [1148] | 611 | if isinstance(nstack0, int): nstack = nstack0
|
|---|
| [1175] | 612 | else: nstack = len(nstack0)
|
|---|
| [998] | 613 | maxpanel, maxstack = 16,8
|
|---|
| [920] | 614 | if n > maxpanel or nstack > maxstack:
|
|---|
| [1148] | 615 | maxn = 0
|
|---|
| 616 | if nstack > maxstack: maxn = maxstack
|
|---|
| 617 | if n > maxpanel: maxn = maxpanel
|
|---|
| [920] | 618 | msg ="Scan to be plotted contains more than %d selections.\n" \
|
|---|
| [1148] | 619 | "Selecting first %d selections..." % (maxn, maxn)
|
|---|
| [920] | 620 | asaplog.push(msg)
|
|---|
| [1614] | 621 | print_log('WARN')
|
|---|
| [920] | 622 | n = min(n,maxpanel)
|
|---|
| [998] | 623 | nstack = min(nstack,maxstack)
|
|---|
| [920] | 624 | if n > 1:
|
|---|
| 625 | ganged = rcParams['plotter.ganged']
|
|---|
| [1446] | 626 | if self._panelling == 'i':
|
|---|
| 627 | ganged = False
|
|---|
| [920] | 628 | if self._rows and self._cols:
|
|---|
| 629 | n = min(n,self._rows*self._cols)
|
|---|
| 630 | self._plotter.set_panels(rows=self._rows,cols=self._cols,
|
|---|
| 631 | nplots=n,ganged=ganged)
|
|---|
| 632 | else:
|
|---|
| 633 | self._plotter.set_panels(rows=n,cols=0,nplots=n,ganged=ganged)
|
|---|
| 634 | else:
|
|---|
| 635 | self._plotter.set_panels()
|
|---|
| 636 | r=0
|
|---|
| 637 | nr = scan.nrow()
|
|---|
| 638 | a0,b0 = -1,-1
|
|---|
| 639 | allxlim = []
|
|---|
| [1018] | 640 | allylim = []
|
|---|
| [920] | 641 | newpanel=True
|
|---|
| 642 | panelcount,stackcount = 0,0
|
|---|
| [1002] | 643 | while r < nr:
|
|---|
| [920] | 644 | a = d[self._panelling](r)
|
|---|
| 645 | b = d[self._stacking](r)
|
|---|
| 646 | if a > a0 and panelcount < n:
|
|---|
| 647 | if n > 1:
|
|---|
| 648 | self._plotter.subplot(panelcount)
|
|---|
| 649 | self._plotter.palette(0)
|
|---|
| 650 | #title
|
|---|
| 651 | xlab = self._abcissa and self._abcissa[panelcount] \
|
|---|
| 652 | or scan._getabcissalabel()
|
|---|
| 653 | ylab = self._ordinate and self._ordinate[panelcount] \
|
|---|
| 654 | or scan._get_ordinate_label()
|
|---|
| 655 | self._plotter.set_axes('xlabel',xlab)
|
|---|
| 656 | self._plotter.set_axes('ylabel',ylab)
|
|---|
| 657 | lbl = self._get_label(scan, r, self._panelling, self._title)
|
|---|
| 658 | if isinstance(lbl, list) or isinstance(lbl, tuple):
|
|---|
| 659 | if 0 <= panelcount < len(lbl):
|
|---|
| 660 | lbl = lbl[panelcount]
|
|---|
| 661 | else:
|
|---|
| 662 | # get default label
|
|---|
| 663 | lbl = self._get_label(scan, r, self._panelling, None)
|
|---|
| 664 | self._plotter.set_axes('title',lbl)
|
|---|
| 665 | newpanel = True
|
|---|
| 666 | stackcount =0
|
|---|
| 667 | panelcount += 1
|
|---|
| 668 | if (b > b0 or newpanel) and stackcount < nstack:
|
|---|
| 669 | y = []
|
|---|
| 670 | if len(polmodes):
|
|---|
| 671 | y = scan._getspectrum(r, polmodes[scan.getpol(r)])
|
|---|
| 672 | else:
|
|---|
| 673 | y = scan._getspectrum(r)
|
|---|
| 674 | m = scan._getmask(r)
|
|---|
| [1146] | 675 | from matplotlib.numerix import logical_not, logical_and
|
|---|
| [920] | 676 | if self._maskselection and len(self._usermask) == len(m):
|
|---|
| 677 | if d[self._stacking](r) in self._maskselection[self._stacking]:
|
|---|
| 678 | m = logical_and(m, self._usermask)
|
|---|
| 679 | x = scan._getabcissa(r)
|
|---|
| [1146] | 680 | from matplotlib.numerix import ma, array
|
|---|
| [1116] | 681 | y = ma.masked_array(y,mask=logical_not(array(m,copy=False)))
|
|---|
| [920] | 682 | if self._minmaxx is not None:
|
|---|
| 683 | s,e = self._slice_indeces(x)
|
|---|
| 684 | x = x[s:e]
|
|---|
| 685 | y = y[s:e]
|
|---|
| [1096] | 686 | if len(x) > 1024 and rcParams['plotter.decimate']:
|
|---|
| 687 | fac = len(x)/1024
|
|---|
| [920] | 688 | x = x[::fac]
|
|---|
| 689 | y = y[::fac]
|
|---|
| 690 | llbl = self._get_label(scan, r, self._stacking, self._lmap)
|
|---|
| 691 | if isinstance(llbl, list) or isinstance(llbl, tuple):
|
|---|
| 692 | if 0 <= stackcount < len(llbl):
|
|---|
| 693 | # use user label
|
|---|
| 694 | llbl = llbl[stackcount]
|
|---|
| 695 | else:
|
|---|
| 696 | # get default label
|
|---|
| 697 | llbl = self._get_label(scan, r, self._stacking, None)
|
|---|
| 698 | self._plotter.set_line(label=llbl)
|
|---|
| [1023] | 699 | plotit = self._plotter.plot
|
|---|
| 700 | if self._hist: plotit = self._plotter.hist
|
|---|
| [1146] | 701 | if len(x) > 0:
|
|---|
| 702 | plotit(x,y)
|
|---|
| 703 | xlim= self._minmaxx or [min(x),max(x)]
|
|---|
| 704 | allxlim += xlim
|
|---|
| 705 | ylim= self._minmaxy or [ma.minimum(y),ma.maximum(y)]
|
|---|
| 706 | allylim += ylim
|
|---|
| [1562] | 707 | else:
|
|---|
| 708 | xlim = self._minmaxx or []
|
|---|
| 709 | allxlim += xlim
|
|---|
| 710 | ylim= self._minmaxy or []
|
|---|
| 711 | allylim += ylim
|
|---|
| [920] | 712 | stackcount += 1
|
|---|
| 713 | # last in colour stack -> autoscale x
|
|---|
| [1562] | 714 | if stackcount == nstack and len(allxlim) > 0:
|
|---|
| [920] | 715 | allxlim.sort()
|
|---|
| [1446] | 716 | self._plotter.subplots[panelcount-1]['axes'].set_xlim([allxlim[0],allxlim[-1]])
|
|---|
| [920] | 717 | # clear
|
|---|
| 718 | allxlim =[]
|
|---|
| 719 |
|
|---|
| 720 | newpanel = False
|
|---|
| 721 | a0=a
|
|---|
| 722 | b0=b
|
|---|
| 723 | # ignore following rows
|
|---|
| 724 | if (panelcount == n) and (stackcount == nstack):
|
|---|
| [1018] | 725 | # last panel -> autoscale y if ganged
|
|---|
| [1562] | 726 | if rcParams['plotter.ganged'] and len(allylim) > 0:
|
|---|
| [1018] | 727 | allylim.sort()
|
|---|
| 728 | self._plotter.set_limits(ylim=[allylim[0],allylim[-1]])
|
|---|
| [998] | 729 | break
|
|---|
| [920] | 730 | r+=1 # next row
|
|---|
| [947] | 731 | #reset the selector to the scantable's original
|
|---|
| 732 | scan.set_selection(savesel)
|
|---|
| [920] | 733 |
|
|---|
| 734 | def set_selection(self, selection=None, refresh=True):
|
|---|
| [947] | 735 | self._selection = isinstance(selection,selector) and selection or selector()
|
|---|
| [920] | 736 | d0 = {'s': 'SCANNO', 'b': 'BEAMNO', 'i':'IFNO',
|
|---|
| 737 | 'p': 'POLNO', 'c': 'CYCLENO', 't' : 'TIME' }
|
|---|
| 738 | order = [d0[self._panelling],d0[self._stacking]]
|
|---|
| [947] | 739 | self._selection.set_order(order)
|
|---|
| [920] | 740 | if self._data and refresh: self.plot(self._data)
|
|---|
| 741 |
|
|---|
| 742 | def _get_selected_n(self, scan):
|
|---|
| [1148] | 743 | d1 = {'b': scan.getbeamnos, 's': scan.getscannos,
|
|---|
| 744 | 'i': scan.getifnos, 'p': scan.getpolnos, 't': scan.ncycle }
|
|---|
| 745 | d2 = { 'b': self._selection.get_beams(),
|
|---|
| 746 | 's': self._selection.get_scans(),
|
|---|
| 747 | 'i': self._selection.get_ifs(),
|
|---|
| 748 | 'p': self._selection.get_pols(),
|
|---|
| 749 | 't': self._selection.get_cycles() }
|
|---|
| [920] | 750 | n = d2[self._panelling] or d1[self._panelling]()
|
|---|
| 751 | nstack = d2[self._stacking] or d1[self._stacking]()
|
|---|
| 752 | return n,nstack
|
|---|
| 753 |
|
|---|
| 754 | def _get_label(self, scan, row, mode, userlabel=None):
|
|---|
| [1153] | 755 | if isinstance(userlabel, list) and len(userlabel) == 0:
|
|---|
| 756 | userlabel = " "
|
|---|
| [947] | 757 | pms = dict(zip(self._selection.get_pols(),self._selection.get_poltypes()))
|
|---|
| [920] | 758 | if len(pms):
|
|---|
| 759 | poleval = scan._getpollabel(scan.getpol(row),pms[scan.getpol(row)])
|
|---|
| 760 | else:
|
|---|
| 761 | poleval = scan._getpollabel(scan.getpol(row),scan.poltype())
|
|---|
| 762 | d = {'b': "Beam "+str(scan.getbeam(row)),
|
|---|
| 763 | 's': scan._getsourcename(row),
|
|---|
| 764 | 'i': "IF"+str(scan.getif(row)),
|
|---|
| [964] | 765 | 'p': poleval,
|
|---|
| [1175] | 766 | 't': str(scan.get_time(row)) }
|
|---|
| [920] | 767 | return userlabel or d[mode]
|
|---|
| [1153] | 768 |
|
|---|
| [1446] | 769 | def plotazel(self, scan=None, outfile=None):
|
|---|
| [1389] | 770 | """
|
|---|
| 771 | plot azimuth and elevation versus time of a scantable
|
|---|
| 772 | """
|
|---|
| 773 | import pylab as PL
|
|---|
| 774 | from matplotlib.dates import DateFormatter, timezone, HourLocator, MinuteLocator, DayLocator
|
|---|
| 775 | from matplotlib.ticker import MultipleLocator
|
|---|
| 776 | from matplotlib.numerix import array, pi
|
|---|
| 777 | self._data = scan
|
|---|
| [1446] | 778 | self._outfile = outfile
|
|---|
| [1457] | 779 | dates = self._data.get_time(asdatetime=True)
|
|---|
| [1389] | 780 | t = PL.date2num(dates)
|
|---|
| 781 | tz = timezone('UTC')
|
|---|
| 782 | PL.cla()
|
|---|
| [1446] | 783 | #PL.ioff()
|
|---|
| [1389] | 784 | PL.clf()
|
|---|
| 785 | tdel = max(t) - min(t)
|
|---|
| 786 | ax = PL.subplot(2,1,1)
|
|---|
| 787 | el = array(self._data.get_elevation())*180./pi
|
|---|
| 788 | PL.ylabel('El [deg.]')
|
|---|
| 789 | dstr = dates[0].strftime('%Y/%m/%d')
|
|---|
| 790 | if tdel > 1.0:
|
|---|
| 791 | dstr2 = dates[len(dates)-1].strftime('%Y/%m/%d')
|
|---|
| 792 | dstr = dstr + " - " + dstr2
|
|---|
| 793 | majloc = DayLocator()
|
|---|
| 794 | minloc = HourLocator(range(0,23,12))
|
|---|
| 795 | timefmt = DateFormatter("%b%d")
|
|---|
| 796 | else:
|
|---|
| 797 | timefmt = DateFormatter('%H')
|
|---|
| 798 | majloc = HourLocator()
|
|---|
| 799 | minloc = MinuteLocator(20)
|
|---|
| 800 | PL.title(dstr)
|
|---|
| [1446] | 801 |
|
|---|
| 802 | if tdel == 0.0:
|
|---|
| 803 | th = (t - PL.floor(t))*24.0
|
|---|
| 804 | PL.plot(th,el,'o',markersize=2, markerfacecolor='b', markeredgecolor='b')
|
|---|
| 805 | else:
|
|---|
| 806 | PL.plot_date(t,el,'o', markersize=2, markerfacecolor='b', markeredgecolor='b',tz=tz)
|
|---|
| 807 | #ax.grid(True)
|
|---|
| 808 | ax.xaxis.set_major_formatter(timefmt)
|
|---|
| 809 | ax.xaxis.set_major_locator(majloc)
|
|---|
| 810 | ax.xaxis.set_minor_locator(minloc)
|
|---|
| [1389] | 811 | ax.yaxis.grid(True)
|
|---|
| 812 | yloc = MultipleLocator(30)
|
|---|
| 813 | ax.set_ylim(0,90)
|
|---|
| 814 | ax.yaxis.set_major_locator(yloc)
|
|---|
| 815 | if tdel > 1.0:
|
|---|
| 816 | labels = ax.get_xticklabels()
|
|---|
| 817 | # PL.setp(labels, fontsize=10, rotation=45)
|
|---|
| 818 | PL.setp(labels, fontsize=10)
|
|---|
| [1446] | 819 |
|
|---|
| [1389] | 820 | # Az plot
|
|---|
| 821 | az = array(self._data.get_azimuth())*180./pi
|
|---|
| 822 | if min(az) < 0:
|
|---|
| 823 | for irow in range(len(az)):
|
|---|
| 824 | if az[irow] < 0: az[irow] += 360.0
|
|---|
| 825 |
|
|---|
| 826 | ax = PL.subplot(2,1,2)
|
|---|
| [1446] | 827 | #PL.xlabel('Time (UT [hour])')
|
|---|
| [1389] | 828 | PL.ylabel('Az [deg.]')
|
|---|
| [1446] | 829 | if tdel == 0.0:
|
|---|
| 830 | PL.plot(th,az,'o',markersize=2, markeredgecolor='b',markerfacecolor='b')
|
|---|
| 831 | else:
|
|---|
| 832 | PL.plot_date(t,az,'o', markersize=2,markeredgecolor='b',markerfacecolor='b',tz=tz)
|
|---|
| 833 | ax.xaxis.set_major_formatter(timefmt)
|
|---|
| 834 | ax.xaxis.set_major_locator(majloc)
|
|---|
| 835 | ax.xaxis.set_minor_locator(minloc)
|
|---|
| 836 | #ax.grid(True)
|
|---|
| [1389] | 837 | ax.set_ylim(0,360)
|
|---|
| 838 | ax.yaxis.grid(True)
|
|---|
| 839 | #hfmt = DateFormatter('%H')
|
|---|
| 840 | #hloc = HourLocator()
|
|---|
| 841 | yloc = MultipleLocator(60)
|
|---|
| 842 | ax.yaxis.set_major_locator(yloc)
|
|---|
| 843 | if tdel > 1.0:
|
|---|
| 844 | labels = ax.get_xticklabels()
|
|---|
| 845 | PL.setp(labels, fontsize=10)
|
|---|
| [1446] | 846 | PL.xlabel('Time (UT [day])')
|
|---|
| 847 | else:
|
|---|
| 848 | PL.xlabel('Time (UT [hour])')
|
|---|
| 849 |
|
|---|
| 850 | #PL.ion()
|
|---|
| [1389] | 851 | PL.draw()
|
|---|
| [1446] | 852 | if (self._outfile is not None):
|
|---|
| 853 | PL.savefig(self._outfile)
|
|---|
| [1389] | 854 |
|
|---|
| [1446] | 855 | def plotpointing(self, scan=None, outfile=None):
|
|---|
| [1389] | 856 | """
|
|---|
| 857 | plot telescope pointings
|
|---|
| 858 | """
|
|---|
| 859 | import pylab as PL
|
|---|
| 860 | from matplotlib.dates import DateFormatter, timezone
|
|---|
| 861 | from matplotlib.ticker import MultipleLocator
|
|---|
| 862 | from matplotlib.numerix import array, pi, zeros
|
|---|
| 863 | self._data = scan
|
|---|
| [1446] | 864 | self._outfile = outfile
|
|---|
| [1389] | 865 | dir = array(self._data.get_directionval()).transpose()
|
|---|
| 866 | ra = dir[0]*180./pi
|
|---|
| 867 | dec = dir[1]*180./pi
|
|---|
| 868 | PL.cla()
|
|---|
| [1446] | 869 | #PL.ioff()
|
|---|
| [1389] | 870 | PL.clf()
|
|---|
| 871 | ax = PL.axes([0.1,0.1,0.8,0.8])
|
|---|
| 872 | ax = PL.axes([0.1,0.1,0.8,0.8])
|
|---|
| 873 | ax.set_aspect('equal')
|
|---|
| 874 | PL.plot(ra,dec, 'b,')
|
|---|
| 875 | PL.xlabel('RA [deg.]')
|
|---|
| 876 | PL.ylabel('Declination [deg.]')
|
|---|
| 877 | PL.title('Telescope pointings')
|
|---|
| 878 | [xmin,xmax,ymin,ymax] = PL.axis()
|
|---|
| 879 | PL.axis([xmax,xmin,ymin,ymax])
|
|---|
| [1446] | 880 | #PL.ion()
|
|---|
| [1389] | 881 | PL.draw()
|
|---|
| [1446] | 882 | if (self._outfile is not None):
|
|---|
| 883 | PL.savefig(self._outfile)
|
|---|
| [1389] | 884 |
|
|---|
| [1446] | 885 | # plot total power data
|
|---|
| 886 | # plotting in time is not yet implemented..
|
|---|
| 887 | def plottp(self, scan=None, outfile=None):
|
|---|
| 888 | if self._plotter.is_dead:
|
|---|
| 889 | self._plotter = self._newplotter()
|
|---|
| 890 | self._plotter.hold()
|
|---|
| 891 | self._plotter.clear()
|
|---|
| 892 | from asap import scantable
|
|---|
| 893 | if not self._data and not scan:
|
|---|
| 894 | msg = "Input is not a scantable"
|
|---|
| 895 | if rcParams['verbose']:
|
|---|
| [1612] | 896 | #print msg
|
|---|
| [1614] | 897 | asaplog.push( msg )
|
|---|
| 898 | print_log( 'ERROR' )
|
|---|
| [1446] | 899 | return
|
|---|
| 900 | raise TypeError(msg)
|
|---|
| 901 | if isinstance(scan, scantable):
|
|---|
| 902 | if self._data is not None:
|
|---|
| 903 | if scan != self._data:
|
|---|
| 904 | self._data = scan
|
|---|
| 905 | # reset
|
|---|
| 906 | self._reset()
|
|---|
| 907 | else:
|
|---|
| 908 | self._data = scan
|
|---|
| 909 | self._reset()
|
|---|
| 910 | # ranges become invalid when abcissa changes?
|
|---|
| 911 | #if self._abcunit and self._abcunit != self._data.get_unit():
|
|---|
| 912 | # self._minmaxx = None
|
|---|
| 913 | # self._minmaxy = None
|
|---|
| 914 | # self._abcunit = self._data.get_unit()
|
|---|
| 915 | # self._datamask = None
|
|---|
| 916 | self._plottp(self._data)
|
|---|
| 917 | if self._minmaxy is not None:
|
|---|
| 918 | self._plotter.set_limits(ylim=self._minmaxy)
|
|---|
| 919 | self._plotter.release()
|
|---|
| 920 | self._plotter.tidy()
|
|---|
| 921 | self._plotter.show(hardrefresh=False)
|
|---|
| 922 | print_log()
|
|---|
| 923 | return
|
|---|
| 924 |
|
|---|
| 925 | def _plottp(self,scan):
|
|---|
| 926 | """
|
|---|
| 927 | private method for plotting total power data
|
|---|
| 928 | """
|
|---|
| 929 | from matplotlib.numerix import ma, array, arange, logical_not
|
|---|
| 930 | r=0
|
|---|
| 931 | nr = scan.nrow()
|
|---|
| 932 | a0,b0 = -1,-1
|
|---|
| 933 | allxlim = []
|
|---|
| 934 | allylim = []
|
|---|
| 935 | y=[]
|
|---|
| 936 | self._plotter.set_panels()
|
|---|
| 937 | self._plotter.palette(0)
|
|---|
| 938 | #title
|
|---|
| 939 | #xlab = self._abcissa and self._abcissa[panelcount] \
|
|---|
| 940 | # or scan._getabcissalabel()
|
|---|
| 941 | #ylab = self._ordinate and self._ordinate[panelcount] \
|
|---|
| 942 | # or scan._get_ordinate_label()
|
|---|
| 943 | xlab = self._abcissa or 'row number' #or Time
|
|---|
| 944 | ylab = self._ordinate or scan._get_ordinate_label()
|
|---|
| 945 | self._plotter.set_axes('xlabel',xlab)
|
|---|
| 946 | self._plotter.set_axes('ylabel',ylab)
|
|---|
| 947 | lbl = self._get_label(scan, r, 's', self._title)
|
|---|
| 948 | if isinstance(lbl, list) or isinstance(lbl, tuple):
|
|---|
| 949 | # if 0 <= panelcount < len(lbl):
|
|---|
| 950 | # lbl = lbl[panelcount]
|
|---|
| 951 | # else:
|
|---|
| 952 | # get default label
|
|---|
| 953 | lbl = self._get_label(scan, r, self._panelling, None)
|
|---|
| 954 | self._plotter.set_axes('title',lbl)
|
|---|
| 955 | y=array(scan._get_column(scan._getspectrum,-1))
|
|---|
| 956 | m = array(scan._get_column(scan._getmask,-1))
|
|---|
| 957 | y = ma.masked_array(y,mask=logical_not(array(m,copy=False)))
|
|---|
| 958 | x = arange(len(y))
|
|---|
| 959 | # try to handle spectral data somewhat...
|
|---|
| 960 | l,m = y.shape
|
|---|
| 961 | if m > 1:
|
|---|
| 962 | y=y.mean(axis=1)
|
|---|
| 963 | plotit = self._plotter.plot
|
|---|
| 964 | llbl = self._get_label(scan, r, self._stacking, None)
|
|---|
| 965 | self._plotter.set_line(label=llbl)
|
|---|
| 966 | if len(x) > 0:
|
|---|
| 967 | plotit(x,y)
|
|---|
| 968 |
|
|---|
| 969 |
|
|---|
| 970 | # forwards to matplotlib.Figure.text
|
|---|
| 971 | def figtext(self, *args, **kwargs):
|
|---|
| 972 | """
|
|---|
| 973 | Add text to figure at location x,y (relative 0-1 coords).
|
|---|
| 974 | This method forwards *args and **kwargs to a Matplotlib method,
|
|---|
| 975 | matplotlib.Figure.text.
|
|---|
| 976 | See the method help for detailed information.
|
|---|
| 977 | """
|
|---|
| 978 | self._plotter.text(*args, **kwargs)
|
|---|
| 979 | # end matplotlib.Figure.text forwarding function
|
|---|
| 980 |
|
|---|
