1 | """ |
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2 | This is the ATNF Single Dish Analysis package. |
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3 | |
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4 | """ |
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5 | import os,sys,shutil, platform |
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6 | try: |
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7 | from functools import wraps as wraps_dec |
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8 | except ImportError: |
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9 | from asap.compatibility import wraps as wraps_dec |
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10 | |
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11 | # Set up CASAPATH and first time use of asap i.e. ~/.asap/* |
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12 | plf = None |
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13 | if sys.platform == "linux2": |
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14 | if platform.architecture()[0] == '64bit': |
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15 | plf = 'linux_64b' |
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16 | else: |
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17 | plf = 'linux_gnu' |
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18 | elif sys.platform == 'darwin': |
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19 | plf = 'darwin' |
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20 | else: |
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21 | # Shouldn't happen - default to linux |
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22 | plf = 'linux' |
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23 | asapdata = __path__[-1] |
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24 | # Allow user defined data location |
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25 | if os.environ.has_key("ASAPDATA"): |
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26 | if os.path.exists(os.environ["ASAPDATA"]): |
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27 | asapdata = os.environ["ASAPDATA"] |
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28 | # use CASAPATH if defined and "data" dir present |
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29 | if not os.environ.has_key("CASAPATH") or \ |
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30 | not os.path.exists(os.environ["CASAPATH"].split()[0]+"/data"): |
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31 | os.environ["CASAPATH"] = "%s %s somwhere" % ( asapdata, plf) |
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32 | # set up user space |
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33 | userdir = os.environ["HOME"]+"/.asap" |
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34 | if not os.path.exists(userdir): |
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35 | print 'First time ASAP use. Setting up ~/.asap' |
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36 | os.mkdir(userdir) |
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37 | #shutil.copyfile(asapdata+"/data/ipythonrc-asap", userdir+"/ipythonrc-asap") |
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38 | # commented out by TT on 2009.06.23 for casapy use |
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39 | ##shutil.copyfile(asapdata+"/data/ipy_user_conf.py", |
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40 | ## userdir+"/ipy_user_conf.py") |
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41 | f = file(userdir+"/asapuserfuncs.py", "w") |
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42 | f.close() |
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43 | f = file(userdir+"/ipythonrc", "w") |
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44 | f.close() |
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45 | # commented out by TT on 2009.06.23 for casapy use |
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46 | ##else: |
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47 | # upgrade to support later ipython versions |
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48 | ##if not os.path.exists(userdir+"/ipy_user_conf.py"): |
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49 | ## shutil.copyfile(asapdata+"/data/ipy_user_conf.py", |
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50 | ## userdir+"/ipy_user_conf.py") |
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51 | |
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52 | # remove from namespace |
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53 | del asapdata, userdir, shutil, platform |
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54 | |
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55 | def _validate_bool(b): |
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56 | 'Convert b to a boolean or raise' |
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57 | bl = b.lower() |
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58 | if bl in ('f', 'no', 'false', '0', 0): return False |
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59 | elif bl in ('t', 'yes', 'true', '1', 1): return True |
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60 | else: |
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61 | raise ValueError('Could not convert "%s" to boolean' % b) |
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62 | |
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63 | def _validate_int(s): |
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64 | 'convert s to int or raise' |
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65 | try: return int(s) |
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66 | except ValueError: |
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67 | raise ValueError('Could not convert "%s" to int' % s) |
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68 | |
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69 | def _asap_fname(): |
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70 | """ |
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71 | Return the path to the rc file |
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72 | |
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73 | Search order: |
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74 | |
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75 | * current working dir |
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76 | * environ var ASAPRC |
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77 | * HOME/.asaprc |
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78 | |
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79 | """ |
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80 | fname = os.path.join( os.getcwd(), '.asaprc') |
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81 | if os.path.exists(fname): return fname |
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82 | |
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83 | if os.environ.has_key('ASAPRC'): |
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84 | path = os.environ['ASAPRC'] |
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85 | if os.path.exists(path): |
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86 | fname = os.path.join(path, '.asaprc') |
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87 | if os.path.exists(fname): |
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88 | return fname |
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89 | |
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90 | if os.environ.has_key('HOME'): |
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91 | home = os.environ['HOME'] |
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92 | fname = os.path.join(home, '.asaprc') |
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93 | if os.path.exists(fname): |
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94 | return fname |
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95 | return None |
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96 | |
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97 | |
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98 | defaultParams = { |
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99 | # general |
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100 | 'verbose' : [True, _validate_bool], |
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101 | 'useplotter' : [True, _validate_bool], |
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102 | 'insitu' : [True, _validate_bool], |
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103 | |
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104 | # plotting |
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105 | 'plotter.gui' : [True, _validate_bool], |
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106 | 'plotter.stacking' : ['p', str], |
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107 | 'plotter.panelling' : ['s', str], |
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108 | 'plotter.colours' : ['', str], |
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109 | 'plotter.linestyles' : ['', str], |
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110 | 'plotter.decimate' : [False, _validate_bool], |
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111 | 'plotter.ganged' : [True, _validate_bool], |
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112 | 'plotter.histogram' : [False, _validate_bool], |
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113 | 'plotter.papertype' : ['A4', str], |
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114 | ## for older Matplotlib version |
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115 | #'plotter.axesformatting' : ['mpl', str], |
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116 | 'plotter.axesformatting' : ['asap', str], |
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117 | |
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118 | # scantable |
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119 | 'scantable.save' : ['ASAP', str], |
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120 | 'scantable.autoaverage' : [True, _validate_bool], |
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121 | 'scantable.freqframe' : ['LSRK', str], #default frequency frame |
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122 | 'scantable.verbosesummary' : [False, _validate_bool], |
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123 | 'scantable.storage' : ['memory', str], |
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124 | 'scantable.history' : [True, _validate_bool], |
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125 | 'scantable.reference' : ['.*(e|w|_R)$', str], |
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126 | 'scantable.parallactify' : [False, _validate_bool] |
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127 | # fitter |
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128 | } |
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129 | |
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130 | def list_rcparameters(): |
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131 | |
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132 | print """ |
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133 | # general |
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134 | # print verbose output |
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135 | verbose : True |
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136 | |
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137 | # preload a default plotter |
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138 | useplotter : True |
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139 | |
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140 | # apply operations on the input scantable or return new one |
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141 | insitu : True |
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142 | |
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143 | # plotting |
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144 | |
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145 | # do we want a GUI or plot to a file |
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146 | plotter.gui : True |
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147 | |
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148 | # default mode for colour stacking |
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149 | plotter.stacking : Pol |
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150 | |
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151 | # default mode for panelling |
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152 | plotter.panelling : scan |
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153 | |
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154 | # push panels together, to share axis labels |
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155 | plotter.ganged : True |
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156 | |
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157 | # decimate the number of points plotted by a factor of |
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158 | # nchan/1024 |
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159 | plotter.decimate : False |
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160 | |
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161 | # default colours/linestyles |
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162 | plotter.colours : |
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163 | plotter.linestyles : |
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164 | |
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165 | # enable/disable histogram plotting |
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166 | plotter.histogram : False |
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167 | |
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168 | # ps paper type |
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169 | plotter.papertype : A4 |
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170 | |
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171 | # The formatting style of the xaxis |
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172 | plotter.axesformatting : 'mpl' (default) or 'asap' (for old versions of matplotlib) |
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173 | |
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174 | # scantable |
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175 | |
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176 | # default storage of scantable ('memory'/'disk') |
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177 | scantable.storage : memory |
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178 | |
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179 | # write history of each call to scantable |
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180 | scantable.history : True |
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181 | |
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182 | # default ouput format when saving |
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183 | scantable.save : ASAP |
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184 | |
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185 | # auto averaging on read |
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186 | scantable.autoaverage : True |
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187 | |
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188 | # default frequency frame to set when function |
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189 | # scantable.set_freqframe is called |
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190 | scantable.freqframe : LSRK |
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191 | |
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192 | # Control the level of information printed by summary |
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193 | scantable.verbosesummary : False |
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194 | |
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195 | # Control the identification of reference (off) scans |
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196 | # This is has to be a regular expression |
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197 | scantable.reference : .*(e|w|_R)$ |
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198 | |
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199 | # Indicate whether the data was parallactified (total phase offest == 0.0) |
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200 | scantable.parallactify : False |
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201 | |
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202 | # Fitter |
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203 | """ |
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204 | |
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205 | def rc_params(): |
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206 | 'Return the default params updated from the values in the rc file' |
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207 | |
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208 | fname = _asap_fname() |
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209 | |
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210 | if fname is None or not os.path.exists(fname): |
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211 | message = 'could not find rc file; returning defaults' |
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212 | ret = dict([ (key, tup[0]) for key, tup in defaultParams.items()]) |
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213 | #print message |
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214 | return ret |
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215 | |
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216 | cnt = 0 |
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217 | for line in file(fname): |
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218 | cnt +=1 |
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219 | line = line.strip() |
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220 | if not len(line): continue |
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221 | if line.startswith('#'): continue |
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222 | tup = line.split(':',1) |
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223 | if len(tup) !=2: |
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224 | #print ('Illegal line #%d\n\t%s\n\tin file "%s"' % (cnt, line, fname)) |
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225 | asaplog.push('Illegal line #%d\n\t%s\n\tin file "%s"' % (cnt, line, fname)) |
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226 | print_log('WARN') |
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227 | continue |
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228 | |
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229 | key, val = tup |
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230 | key = key.strip() |
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231 | if not defaultParams.has_key(key): |
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232 | #print ('Bad key "%s" on line %d in %s' % (key, cnt, fname)) |
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233 | asaplog.push('Bad key "%s" on line %d in %s' % (key, cnt, fname)) |
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234 | print_log('WARN') |
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235 | continue |
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236 | |
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237 | default, converter = defaultParams[key] |
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238 | |
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239 | ind = val.find('#') |
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240 | if ind>=0: val = val[:ind] # ignore trailing comments |
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241 | val = val.strip() |
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242 | try: cval = converter(val) # try to convert to proper type or raise |
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243 | except ValueError, msg: |
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244 | #print ('Bad val "%s" on line #%d\n\t"%s"\n\tin file "%s"\n\t%s' % (val, cnt, line, fname, msg)) |
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245 | asaplog.push('Bad val "%s" on line #%d\n\t"%s"\n\tin file "%s"\n\t%s' % (val, cnt, line, fname, str(msg))) |
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246 | print_log('WARN') |
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247 | continue |
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248 | else: |
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249 | # Alles Klar, update dict |
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250 | defaultParams[key][0] = cval |
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251 | |
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252 | # strip the conveter funcs and return |
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253 | ret = dict([ (key, tup[0]) for key, tup in defaultParams.items()]) |
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254 | print ('loaded rc file %s'%fname) |
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255 | |
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256 | return ret |
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257 | |
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258 | |
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259 | # this is the instance used by the asap classes |
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260 | rcParams = rc_params() |
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261 | |
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262 | rcParamsDefault = dict(rcParams.items()) # a copy |
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263 | |
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264 | def rc(group, **kwargs): |
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265 | """ |
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266 | Set the current rc params. Group is the grouping for the rc, eg |
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267 | for scantable.save the group is 'scantable', for plotter.stacking, the |
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268 | group is 'plotter', and so on. kwargs is a list of attribute |
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269 | name/value pairs, eg |
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270 | |
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271 | rc('scantable', save='SDFITS') |
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272 | |
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273 | sets the current rc params and is equivalent to |
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274 | |
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275 | rcParams['scantable.save'] = 'SDFITS' |
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276 | |
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277 | Use rcdefaults to restore the default rc params after changes. |
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278 | """ |
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279 | |
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280 | aliases = {} |
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281 | |
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282 | for k,v in kwargs.items(): |
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283 | name = aliases.get(k) or k |
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284 | if len(group): |
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285 | key = '%s.%s' % (group, name) |
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286 | else: |
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287 | key = name |
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288 | if not rcParams.has_key(key): |
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289 | raise KeyError('Unrecognized key "%s" for group "%s" and name "%s"' % (key, group, name)) |
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290 | |
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291 | rcParams[key] = v |
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292 | |
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293 | |
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294 | def rcdefaults(): |
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295 | """ |
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296 | Restore the default rc params - the ones that were created at |
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297 | asap load time |
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298 | """ |
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299 | rcParams.update(rcParamsDefault) |
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300 | |
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301 | def _n_bools(n, val): |
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302 | return [ val for i in xrange(n) ] |
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303 | |
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304 | def _is_sequence_or_number(param, ptype=int): |
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305 | if isinstance(param,tuple) or isinstance(param,list): |
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306 | if len(param) == 0: return True # empty list |
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307 | out = True |
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308 | for p in param: |
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309 | out &= isinstance(p,ptype) |
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310 | return out |
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311 | elif isinstance(param, ptype): |
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312 | return True |
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313 | return False |
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314 | |
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315 | def _to_list(param, ptype=int): |
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316 | if isinstance(param, ptype): |
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317 | if ptype is str: return param.split() |
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318 | else: return [param] |
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319 | if _is_sequence_or_number(param, ptype): |
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320 | return param |
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321 | return None |
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322 | |
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323 | def unique(x): |
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324 | """ |
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325 | Return the unique values in a list |
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326 | Parameters: |
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327 | x: the list to reduce |
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328 | Examples: |
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329 | x = [1,2,3,3,4] |
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330 | print unique(x) |
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331 | [1,2,3,4] |
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332 | """ |
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333 | return dict([ (val, 1) for val in x]).keys() |
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334 | |
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335 | def list_files(path=".",suffix="rpf"): |
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336 | """ |
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337 | Return a list files readable by asap, such as rpf, sdfits, mbf, asap |
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338 | Parameters: |
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339 | path: The directory to list (default '.') |
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340 | suffix: The file extension (default rpf) |
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341 | Example: |
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342 | files = list_files("data/","sdfits") |
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343 | print files |
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344 | ['data/2001-09-01_0332_P363.sdfits', |
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345 | 'data/2003-04-04_131152_t0002.sdfits', |
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346 | 'data/Sgr_86p262_best_SPC.sdfits'] |
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347 | """ |
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348 | if not os.path.isdir(path): |
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349 | return None |
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350 | valid = "rpf rpf.1 rpf.2 sdf sdfits mbf asap".split() |
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351 | if not suffix in valid: |
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352 | return None |
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353 | files = [os.path.expanduser(os.path.expandvars(path+"/"+f)) for f in os.listdir(path)] |
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354 | return filter(lambda x: x.endswith(suffix),files) |
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355 | |
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356 | # workaround for ipython, which redirects this if banner=0 in ipythonrc |
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357 | sys.stdout = sys.__stdout__ |
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358 | sys.stderr = sys.__stderr__ |
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359 | |
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360 | # Logging |
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361 | from asap._asap import Log as _asaplog |
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362 | global asaplog |
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363 | asaplog=_asaplog() |
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364 | if rcParams['verbose']: |
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365 | asaplog.enable() |
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366 | else: |
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367 | asaplog.disable() |
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368 | |
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369 | |
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370 | def print_log_dec(f): |
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371 | @wraps_dec(f) |
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372 | def wrap_it(*args, **kw): |
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373 | val = f(*args, **kw) |
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374 | print_log() |
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375 | return val |
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376 | return wrap_it |
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377 | |
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378 | def print_log(level='INFO'): |
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379 | from taskinit import casalog |
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380 | log = asaplog.pop() |
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381 | #if len(log) and rcParams['verbose']: print log |
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382 | if len(log) and rcParams['verbose']: casalog.post( log, priority=level ) |
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383 | return |
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384 | |
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385 | def mask_and(a, b): |
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386 | assert(len(a)==len(b)) |
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387 | return [ a[i] & b[i] for i in xrange(len(a)) ] |
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388 | |
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389 | def mask_or(a, b): |
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390 | assert(len(a)==len(b)) |
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391 | return [ a[i] | b[i] for i in xrange(len(a)) ] |
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392 | |
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393 | def mask_not(a): |
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394 | return [ not i for i in a ] |
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395 | |
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396 | from asapfitter import fitter |
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397 | from asapreader import reader |
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398 | from selector import selector |
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399 | |
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400 | from asapmath import * |
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401 | from scantable import scantable |
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402 | from asaplinefind import linefinder |
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403 | from simplelinefinder import simplelinefinder |
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404 | from linecatalog import linecatalog |
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405 | from interactivemask import interactivemask |
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406 | from opacity import skydip |
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407 | from opacity import model as opacity_model |
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408 | |
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409 | if rcParams['useplotter']: |
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410 | try: |
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411 | from asapplotter import asapplotter |
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412 | gui = os.environ.has_key('DISPLAY') and rcParams['plotter.gui'] |
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413 | if gui: |
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414 | import matplotlib |
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415 | if not matplotlib.sys.modules['matplotlib.backends']: matplotlib.use("TkAgg") |
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416 | from matplotlib import pylab |
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417 | xyplotter = pylab |
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418 | plotter = asapplotter(gui) |
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419 | del gui |
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420 | except ImportError: |
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421 | #print "Matplotlib not installed. No plotting available" |
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422 | asaplog.post( "Matplotlib not installed. No plotting available") |
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423 | print_log('WARN') |
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424 | |
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425 | __date__ = '$Date: 2010-06-09 09:03:06 +0000 (Wed, 09 Jun 2010) $'.split()[1] |
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426 | __version__ = '3.0.0 alma' |
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427 | # nrao casapy specific, get revision number |
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428 | #__revision__ = ' unknown ' |
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429 | casapath=os.environ["CASAPATH"].split() |
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430 | #svninfo.txt path |
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431 | if os.path.isdir(casapath[0]+'/'+casapath[1]+'/python/2.5/asap'): |
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432 | # for casa developer environment (linux or darwin) |
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433 | revinfo=casapath[0]+'/'+casapath[1]+'/python/2.5/asap/svninfo.txt' |
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434 | else: |
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435 | # for end-user environments |
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436 | if casapath[1]=='darwin': |
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437 | revinfo=casapath[0]+'/Resources/python/asap/svninfo.txt' |
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438 | else: |
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439 | revinfo=casapath[0]+'/lib/python2.5/asap/svninfo.txt' |
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440 | if os.path.isfile(revinfo): |
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441 | f = file(revinfo) |
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442 | f.readline() |
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443 | revsionno=f.readline() |
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444 | f.close() |
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445 | del f |
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446 | __revision__ = revsionno.rstrip() |
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447 | else: |
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448 | __revision__ = ' unknown ' |
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449 | |
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450 | def is_ipython(): |
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451 | return 'IPython' in sys.modules.keys() |
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452 | if is_ipython(): |
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453 | def version(): print "ASAP %s(%s)"% (__version__, __date__) |
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454 | |
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455 | def list_scans(t = scantable): |
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456 | import inspect |
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457 | print "The user created scantables are: ", |
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458 | globs=inspect.currentframe().f_back.f_locals.copy() |
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459 | out = [ k for k,v in globs.iteritems() \ |
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460 | if isinstance(v, scantable) and not k.startswith("_") ] |
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461 | print out |
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462 | return out |
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463 | |
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464 | def commands(): |
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465 | x = """ |
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466 | [The scan container] |
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467 | scantable - a container for integrations/scans |
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468 | (can open asap/rpfits/sdfits and ms files) |
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469 | copy - returns a copy of a scan |
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470 | get_scan - gets a specific scan out of a scantable |
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471 | (by name or number) |
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472 | drop_scan - drops a specific scan out of a scantable |
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473 | (by number) |
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474 | set_selection - set a new subselection of the data |
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475 | get_selection - get the current selection object |
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476 | summary - print info about the scantable contents |
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477 | stats - get specified statistic of the spectra in |
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478 | the scantable |
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479 | stddev - get the standard deviation of the spectra |
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480 | in the scantable |
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481 | get_tsys - get the TSys |
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482 | get_time - get the timestamps of the integrations |
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483 | get_inttime - get the integration time |
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484 | get_sourcename - get the source names of the scans |
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485 | get_azimuth - get the azimuth of the scans |
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486 | get_elevation - get the elevation of the scans |
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487 | get_parangle - get the parallactic angle of the scans |
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488 | get_coordinate - get the spectral coordinate for the given row, |
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489 | which can be used for coordinate conversions |
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490 | get_weather - get the weather condition parameters |
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491 | get_unit - get the current unit |
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492 | set_unit - set the abcissa unit to be used from this |
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493 | point on |
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494 | get_abcissa - get the abcissa values and name for a given |
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495 | row (time) |
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496 | get_column_names - get the names of the columns in the scantable |
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497 | for use with selector.set_query |
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498 | set_freqframe - set the frame info for the Spectral Axis |
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499 | (e.g. 'LSRK') |
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500 | set_doppler - set the doppler to be used from this point on |
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501 | set_dirframe - set the frame for the direction on the sky |
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502 | set_instrument - set the instrument name |
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503 | set_feedtype - set the feed type |
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504 | get_fluxunit - get the brightness flux unit |
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505 | set_fluxunit - set the brightness flux unit |
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506 | set_sourcetype - set the type of the source - source or reference |
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507 | create_mask - return an mask in the current unit |
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508 | for the given region. The specified regions |
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509 | are NOT masked |
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510 | get_restfreqs - get the current list of rest frequencies |
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511 | set_restfreqs - set a list of rest frequencies |
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512 | shift_refpix - shift the reference pixel of the IFs |
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513 | set_spectrum - overwrite the spectrum for a given row |
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514 | get_spectrum - retrieve the spectrum for a given |
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515 | get_mask - retrieve the mask for a given |
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516 | flag - flag selected channels in the data |
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517 | lag_flag - flag specified frequency in the data |
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518 | save - save the scantable to disk as either 'ASAP', |
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519 | 'SDFITS' or 'ASCII' |
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520 | nbeam,nif,nchan,npol - the number of beams/IFs/Pols/Chans |
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521 | nscan - the number of scans in the scantable |
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522 | nrow - the number of spectra in the scantable |
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523 | history - print the history of the scantable |
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524 | get_fit - get a fit which has been stored witnh the data |
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525 | average_time - return the (weighted) time average of a scan |
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526 | or a list of scans |
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527 | average_pol - average the polarisations together. |
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528 | average_beam - average the beams together. |
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529 | convert_pol - convert to a different polarisation type |
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530 | auto_quotient - return the on/off quotient with |
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531 | automatic detection of the on/off scans (closest |
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532 | in time off is selected) |
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533 | mx_quotient - Form a quotient using MX data (off beams) |
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534 | scale, *, / - return a scan scaled by a given factor |
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535 | add, + - return a scan with given value added |
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536 | sub, - - return a scan with given value subtracted |
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537 | bin - return a scan with binned channels |
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538 | resample - return a scan with resampled channels |
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539 | smooth - return the spectrally smoothed scan |
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540 | poly_baseline - fit a polynomial baseline to all Beams/IFs/Pols |
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541 | auto_poly_baseline - automatically fit a polynomial baseline |
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542 | recalc_azel - recalculate azimuth and elevation based on |
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543 | the pointing |
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544 | gain_el - apply gain-elevation correction |
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545 | opacity - apply opacity correction |
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546 | convert_flux - convert to and from Jy and Kelvin brightness |
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547 | units |
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548 | freq_align - align spectra in frequency frame |
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549 | invert_phase - Invert the phase of the cross-correlation |
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550 | swap_linears - Swap XX and YY (or RR LL) |
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551 | rotate_xyphase - rotate XY phase of cross correlation |
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552 | rotate_linpolphase - rotate the phase of the complex |
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553 | polarization O=Q+iU correlation |
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554 | freq_switch - perform frequency switching on the data |
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555 | stats - Determine the specified statistic, e.g. 'min' |
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556 | 'max', 'rms' etc. |
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557 | stddev - Determine the standard deviation of the current |
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558 | beam/if/pol |
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559 | get_row_selector - get the selection object for a specified row |
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560 | number |
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561 | [Selection] |
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562 | selector - a selection object to set a subset of a scantable |
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563 | set_scans - set (a list of) scans by index |
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564 | set_cycles - set (a list of) cycles by index |
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565 | set_beams - set (a list of) beamss by index |
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566 | set_ifs - set (a list of) ifs by index |
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567 | set_polarisations - set (a list of) polarisations by name |
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568 | or by index |
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569 | set_names - set a selection by name (wildcards allowed) |
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570 | set_tsys - set a selection by tsys thresholds |
---|
571 | set_query - set a selection by SQL-like query, e.g. BEAMNO==1 |
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572 | ( also get_ functions for all these ) |
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573 | reset - unset all selections |
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574 | + - merge two selections |
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575 | |
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576 | [Math] Mainly functions which operate on more than one scantable |
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577 | |
---|
578 | average_time - return the (weighted) time average |
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579 | of a list of scans |
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580 | quotient - return the on/off quotient |
---|
581 | simple_math - simple mathematical operations on two scantables, |
---|
582 | 'add', 'sub', 'mul', 'div' |
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583 | quotient - build quotient of the given on and off scans |
---|
584 | (matched pairs and 1 off - n on are valid) |
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585 | merge - merge a list of scantables |
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586 | |
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587 | [Line Catalog] |
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588 | linecatalog - a linecatalog wrapper, taking an ASCII or |
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589 | internal format table |
---|
590 | summary - print a summary of the current selection |
---|
591 | set_name - select a subset by name pattern, e.g. '*OH*' |
---|
592 | set_strength_limits - select a subset by line strength limits |
---|
593 | set_frequency_limits - select a subset by frequency limits |
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594 | reset - unset all selections |
---|
595 | save - save the current subset to a table (internal |
---|
596 | format) |
---|
597 | get_row - get the name and frequency from a specific |
---|
598 | row in the table |
---|
599 | [Fitting] |
---|
600 | fitter |
---|
601 | auto_fit - return a scan where the function is |
---|
602 | applied to all Beams/IFs/Pols. |
---|
603 | commit - return a new scan where the fits have been |
---|
604 | commited. |
---|
605 | fit - execute the actual fitting process |
---|
606 | store_fit - store the fit parameters in the data (scantable) |
---|
607 | get_chi2 - get the Chi^2 |
---|
608 | set_scan - set the scantable to be fit |
---|
609 | set_function - set the fitting function |
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610 | set_parameters - set the parameters for the function(s), and |
---|
611 | set if they should be held fixed during fitting |
---|
612 | set_gauss_parameters - same as above but specialised for individual |
---|
613 | gaussian components |
---|
614 | get_parameters - get the fitted parameters |
---|
615 | plot - plot the resulting fit and/or components and |
---|
616 | residual |
---|
617 | [Plotter] |
---|
618 | asapplotter - a plotter for asap, default plotter is |
---|
619 | called 'plotter' |
---|
620 | plot - plot a scantable |
---|
621 | plot_lines - plot a linecatalog overlay |
---|
622 | plotazel - plot azimuth and elevation versus time |
---|
623 | plotpointing - plot telescope pointings |
---|
624 | save - save the plot to a file ('png' ,'ps' or 'eps') |
---|
625 | set_mode - set the state of the plotter, i.e. |
---|
626 | what is to be plotted 'colour stacked' |
---|
627 | and what 'panelled' |
---|
628 | set_selection - only plot a selected part of the data |
---|
629 | set_range - set a 'zoom' window [xmin,xmax,ymin,ymax] |
---|
630 | set_legend - specify user labels for the legend indeces |
---|
631 | set_title - specify user labels for the panel indeces |
---|
632 | set_abcissa - specify a user label for the abcissa |
---|
633 | set_ordinate - specify a user label for the ordinate |
---|
634 | set_layout - specify the multi-panel layout (rows,cols) |
---|
635 | set_colors - specify a set of colours to use |
---|
636 | set_linestyles - specify a set of linestyles to use if only |
---|
637 | using one color |
---|
638 | set_font - set general font properties, e.g. 'family' |
---|
639 | set_histogram - plot in historam style |
---|
640 | set_mask - set a plotting mask for a specific polarization |
---|
641 | text - draw text annotations either in data or relative |
---|
642 | coordinates |
---|
643 | arrow - draw arrow annotations either in data or relative |
---|
644 | coordinates |
---|
645 | axhline,axvline - draw horizontal/vertical lines |
---|
646 | axhspan,axvspan - draw horizontal/vertical regions |
---|
647 | annotate - draw an arrow with label |
---|
648 | create_mask - create a scnatble mask interactively |
---|
649 | |
---|
650 | xyplotter - matplotlib/pylab plotting functions |
---|
651 | |
---|
652 | [General] |
---|
653 | commands - this command |
---|
654 | print - print details about a variable |
---|
655 | list_scans - list all scantables created by the user |
---|
656 | list_files - list all files readable by asap (default rpf) |
---|
657 | del - delete the given variable from memory |
---|
658 | range - create a list of values, e.g. |
---|
659 | range(3) = [0,1,2], range(2,5) = [2,3,4] |
---|
660 | help - print help for one of the listed functions |
---|
661 | execfile - execute an asap script, e.g. execfile('myscript') |
---|
662 | list_rcparameters - print out a list of possible values to be |
---|
663 | put into $HOME/.asaprc |
---|
664 | rc - set rc parameters from within asap |
---|
665 | mask_and,mask_or, |
---|
666 | mask_not - boolean operations on masks created with |
---|
667 | scantable.create_mask |
---|
668 | skydip - gain opacity values from a sky dip observation |
---|
669 | opacity_model - compute opacities fro given frequencies based on |
---|
670 | atmospheric model |
---|
671 | |
---|
672 | Note: |
---|
673 | How to use this with help: |
---|
674 | # function 'summary' |
---|
675 | [xxx] is just a category |
---|
676 | Every 'sub-level' in this list should be replaces by a '.' Period when |
---|
677 | using help |
---|
678 | Example: |
---|
679 | ASAP> help scantable # to get info on ths scantable |
---|
680 | ASAP> help scantable.summary # to get help on the scantable's |
---|
681 | ASAP> help average_time |
---|
682 | |
---|
683 | """ |
---|
684 | if rcParams['verbose']: |
---|
685 | try: |
---|
686 | from IPython.genutils import page as pager |
---|
687 | except ImportError: |
---|
688 | from pydoc import pager |
---|
689 | pager(x) |
---|
690 | else: |
---|
691 | print x |
---|
692 | return |
---|
693 | |
---|
694 | def welcome(): |
---|
695 | return """Welcome to ASAP v%s (%s) - the ATNF Spectral Analysis Package |
---|
696 | |
---|
697 | Please report any bugs via: |
---|
698 | http://svn.atnf.csiro.au/trac/asap/simpleticket |
---|
699 | |
---|
700 | [IMPORTANT: ASAP is 0-based] |
---|
701 | Type commands() to get a list of all available ASAP commands.""" % (__version__, __date__) |
---|