[805] | 1 | // |
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| 2 | // C++ Interface: STMath |
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| 3 | // |
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| 4 | // Description: |
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| 5 | // |
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| 6 | // |
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| 7 | // Author: Malte Marquarding <asap@atnf.csiro.au>, (C) 2006 |
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| 8 | // |
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| 9 | // Copyright: See COPYING file that comes with this distribution |
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| 10 | // |
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| 11 | // |
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| 12 | #ifndef ASAPSTMATH_H |
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| 13 | #define ASAPSTMATH_H |
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[2] | 14 | |
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[38] | 15 | #include <string> |
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[805] | 16 | #include <map> |
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| 17 | |
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[130] | 18 | #include <casa/aips.h> |
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[81] | 19 | #include <casa/Utilities/CountedPtr.h> |
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[805] | 20 | #include <casa/BasicSL/String.h> |
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| 21 | #include <casa/Arrays/Vector.h> |
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| 22 | #include <scimath/Mathematics/InterpolateArray1D.h> |
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[294] | 23 | |
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[805] | 24 | #include "Scantable.h" |
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[834] | 25 | #include "STDefs.h" |
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[896] | 26 | #include "STPol.h" |
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[894] | 27 | #include "Logger.h" |
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[2] | 28 | |
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[83] | 29 | namespace asap { |
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[2] | 30 | |
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[805] | 31 | /** |
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[1106] | 32 | * Mathmatical operations on Scantable objects |
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| 33 | * @author Malte Marquarding |
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[805] | 34 | */ |
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[890] | 35 | class STMath : private Logger { |
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[716] | 36 | public: |
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[1106] | 37 | // typedef for long method name |
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[805] | 38 | typedef casa::InterpolateArray1D<casa::Double, |
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| 39 | casa::Float>::InterpolationMethod imethod; |
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[299] | 40 | |
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[1106] | 41 | // typedef for std::map |
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[805] | 42 | typedef std::map<std::string, imethod> imap; |
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[177] | 43 | |
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[1106] | 44 | /** |
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| 45 | * whether to operate on the given Scantable or return a new one |
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| 46 | * @param insitu the toggle for this behaviour |
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| 47 | */ |
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[805] | 48 | STMath(bool insitu=true); |
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[221] | 49 | |
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[995] | 50 | virtual ~STMath(); |
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[227] | 51 | |
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[805] | 52 | /** |
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[1295] | 53 | * get the currnt @attr inistu_ state |
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[805] | 54 | */ |
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| 55 | bool insitu() const { return insitu_;}; |
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[1143] | 56 | |
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[1106] | 57 | /** |
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| 58 | * set the currnt @attr inistu state |
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| 59 | * @param b the new state |
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| 60 | */ |
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[805] | 61 | void setInsitu(bool b) { insitu_ = b; }; |
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[262] | 62 | |
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[1106] | 63 | |
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[1140] | 64 | /** |
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| 65 | * average a vector of Scantables |
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| 66 | * @param in the vector of Scantables to average |
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[1295] | 67 | * @param mask an optional mask to apply on specific weights |
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[1140] | 68 | * @param weight weighting scheme |
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| 69 | * @param avmode the mode ov averaging. Per "SCAN" or "ALL". |
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| 70 | * @return a casa::CountedPtr<Scantable> which either holds a new Scantable |
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| 71 | * or returns the imput pointer. |
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| 72 | */ |
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[805] | 73 | casa::CountedPtr<Scantable> |
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| 74 | average( const std::vector<casa::CountedPtr<Scantable> >& in, |
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[858] | 75 | const std::vector<bool>& mask = std::vector<bool>(), |
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| 76 | const std::string& weight = "NONE", |
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[977] | 77 | const std::string& avmode = "SCAN"); |
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[1066] | 78 | |
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[1140] | 79 | /** |
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| 80 | * median average a vector of Scantables. See also STMath::average |
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| 81 | * @param in the Scantable to average |
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| 82 | * @param mode the averaging mode. Currently only "MEDIAN" |
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| 83 | * @param avmode the mode ov averaging. Per "SCAN" or "ALL". |
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| 84 | * @return a casa::CountedPtr<Scantable> which either holds a new Scantable |
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| 85 | * or returns the imput pointer. |
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| 86 | */ |
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[1069] | 87 | casa::CountedPtr<Scantable> |
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| 88 | averageChannel( const casa::CountedPtr<Scantable> & in, |
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[1078] | 89 | const std::string& mode = "MEDIAN", |
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| 90 | const std::string& avmode = "SCAN"); |
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[1069] | 91 | |
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[1140] | 92 | /** |
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[1145] | 93 | * Average polarisations together. really only useful if only linears are |
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| 94 | * available. |
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[1140] | 95 | * @param in the input Scantable |
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| 96 | * @param mask an optional mask if weight allows one |
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| 97 | * @param weight weighting scheme |
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[1143] | 98 | * @return |
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[1140] | 99 | */ |
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[940] | 100 | casa::CountedPtr< Scantable > |
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| 101 | averagePolarisations( const casa::CountedPtr< Scantable > & in, |
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[1140] | 102 | const std::vector<bool>& mask, |
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| 103 | const std::string& weight ); |
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[234] | 104 | |
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[1145] | 105 | /** |
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| 106 | * Average beams together. |
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| 107 | * @param in the input Scantable |
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| 108 | * @param mask an optional mask if weight allows one |
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| 109 | * @param weight weighting scheme |
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| 110 | * @return |
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| 111 | */ |
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| 112 | casa::CountedPtr< Scantable > |
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| 113 | averageBeams( const casa::CountedPtr< Scantable > & in, |
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| 114 | const std::vector<bool>& mask, |
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| 115 | const std::string& weight ); |
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| 116 | |
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[805] | 117 | casa::CountedPtr<Scantable> |
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| 118 | unaryOperate( const casa::CountedPtr<Scantable>& in, float val, |
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| 119 | const std::string& mode, bool tsys=false ); |
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[169] | 120 | |
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[1310] | 121 | casa::CountedPtr<Scantable> |
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| 122 | binaryOperate( const casa::CountedPtr<Scantable>& left, |
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| 123 | const casa::CountedPtr<Scantable>& right, |
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| 124 | const std::string& mode); |
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| 125 | |
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[1066] | 126 | casa::CountedPtr<Scantable> autoQuotient(const casa::CountedPtr<Scantable>& in, |
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| 127 | const std::string& mode = "NEAREST", |
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| 128 | bool preserve = true); |
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| 129 | |
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| 130 | casa::CountedPtr<Scantable> quotient( const casa::CountedPtr<Scantable>& on, |
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| 131 | const casa::CountedPtr<Scantable>& off, |
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[805] | 132 | bool preserve = true ); |
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[169] | 133 | |
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[805] | 134 | casa::CountedPtr<Scantable> |
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| 135 | freqSwitch( const casa::CountedPtr<Scantable>& in ); |
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[716] | 136 | |
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[805] | 137 | std::vector<float> statistic(const casa::CountedPtr<Scantable>& in, |
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| 138 | const std::vector<bool>& mask, |
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| 139 | const std::string& which); |
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[457] | 140 | |
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[805] | 141 | casa::CountedPtr<Scantable> bin( const casa::CountedPtr<Scantable>& in, |
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| 142 | int width=5); |
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| 143 | casa::CountedPtr<Scantable> |
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| 144 | resample(const casa::CountedPtr<Scantable>& in, |
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| 145 | const std::string& method, float width); |
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[457] | 146 | |
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[805] | 147 | casa::CountedPtr<Scantable> |
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| 148 | smooth(const casa::CountedPtr<Scantable>& in, const std::string& kernel, |
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[995] | 149 | float width); |
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[169] | 150 | |
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[805] | 151 | casa::CountedPtr<Scantable> |
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| 152 | gainElevation(const casa::CountedPtr<Scantable>& in, |
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[867] | 153 | const std::vector<float>& coeff, |
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[805] | 154 | const std::string& fileName, |
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[995] | 155 | const std::string& method); |
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[805] | 156 | casa::CountedPtr<Scantable> |
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| 157 | convertFlux(const casa::CountedPtr<Scantable>& in, float d, |
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| 158 | float etaap, float jyperk); |
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[152] | 159 | |
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[805] | 160 | casa::CountedPtr<Scantable> opacity(const casa::CountedPtr<Scantable>& in, |
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| 161 | float tau); |
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[144] | 162 | |
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[841] | 163 | casa::CountedPtr<Scantable> |
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| 164 | merge(const std::vector<casa::CountedPtr<Scantable> >& in); |
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| 165 | |
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[896] | 166 | casa::CountedPtr<Scantable> |
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| 167 | invertPhase( const casa::CountedPtr<Scantable>& in); |
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[912] | 168 | |
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[896] | 169 | casa::CountedPtr<Scantable> |
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| 170 | rotateXYPhase( const casa::CountedPtr<Scantable>& in, float phase); |
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[912] | 171 | |
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[896] | 172 | casa::CountedPtr<Scantable> |
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| 173 | rotateLinPolPhase( const casa::CountedPtr<Scantable>& in, float phase); |
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| 174 | |
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| 175 | casa::CountedPtr<Scantable> |
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| 176 | swapPolarisations(const casa::CountedPtr<Scantable>& in); |
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| 177 | |
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[917] | 178 | casa::CountedPtr<Scantable> |
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| 179 | frequencyAlign( const casa::CountedPtr<Scantable>& in, |
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[927] | 180 | const std::string& refTime = "", |
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| 181 | const std::string& method = "cubic" ); |
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[917] | 182 | |
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[992] | 183 | casa::CountedPtr<Scantable> |
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| 184 | convertPolarisation( const casa::CountedPtr<Scantable>& in, |
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| 185 | const std::string& newtype); |
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[1143] | 186 | |
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[1140] | 187 | casa::CountedPtr<Scantable> |
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[1143] | 188 | mxExtract( const casa::CountedPtr<Scantable>& in, |
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| 189 | const std::string& srctype = "on"); |
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[992] | 190 | |
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[1192] | 191 | /** |
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| 192 | * "hard" flag the data, this flags everything selected in setSelection() |
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| 193 | * @param frequency the frequency to remove |
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| 194 | * @param width the number of lags to flag left to the side of the frequency |
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| 195 | */ |
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| 196 | casa::CountedPtr<Scantable> |
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| 197 | lagFlag( const casa::CountedPtr<Scantable>& in, double frequency, |
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[1200] | 198 | double width); |
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[1192] | 199 | |
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[805] | 200 | private: |
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[896] | 201 | casa::CountedPtr<Scantable> applyToPol( const casa::CountedPtr<Scantable>& in, |
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| 202 | STPol::polOperation fptr, |
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| 203 | casa::Float phase); |
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| 204 | |
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[805] | 205 | static imethod stringToIMethod(const std::string& in); |
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| 206 | static WeightType stringToWeight(const std::string& in); |
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[146] | 207 | |
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[805] | 208 | void scaleByVector(casa::Table& in, |
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| 209 | const casa::Vector<casa::Float>& factor, |
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| 210 | bool dotsys); |
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[152] | 211 | |
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[805] | 212 | void scaleFromAsciiTable(casa::Table& in, const std::string& filename, |
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| 213 | const std::string& method, |
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| 214 | const casa::Vector<casa::Float>& xout, |
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| 215 | bool dotsys); |
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[162] | 216 | |
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[805] | 217 | void scaleFromTable(casa::Table& in, const casa::Table& table, |
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| 218 | const std::string& method, |
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| 219 | const casa::Vector<casa::Float>& xout, bool dotsys); |
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[227] | 220 | |
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[805] | 221 | void convertBrightnessUnits(casa::CountedPtr<Scantable>& in, |
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| 222 | bool tokelvin, float cfac); |
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[227] | 223 | |
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[805] | 224 | casa::CountedPtr< Scantable > |
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| 225 | getScantable(const casa::CountedPtr< Scantable >& in, bool droprows); |
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[230] | 226 | |
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[805] | 227 | casa::MaskedArray<casa::Float> |
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| 228 | maskedArray( const casa::Vector<casa::Float>& s, |
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| 229 | const casa::Vector<casa::uChar>& f ); |
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| 230 | casa::Vector<casa::uChar> |
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| 231 | flagsFromMA(const casa::MaskedArray<casa::Float>& ma); |
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[230] | 232 | |
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[805] | 233 | bool insitu_; |
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| 234 | }; |
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[234] | 235 | |
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[805] | 236 | } |
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[165] | 237 | #endif |
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