| [664] | 1 | <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
|
|---|
| 2 | <html>
|
|---|
| 3 | <head>
|
|---|
| 4 | <?php include("base.inc"); ?>
|
|---|
| 5 | <title>ASAP - ATNF Spectral line Analysis Package</title>
|
|---|
| 6 | <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
|
|---|
| 7 | <meta name="DC.Creator" lang="en" content="personalName=Marquarding,Malte" />
|
|---|
| 8 | <meta name="ATNF.Maintainer" content="contactName=Marquarding,Malte" />
|
|---|
| 9 | <meta name="DC.Title" lang="en" content="Homepage of Malte Marquarding" />
|
|---|
| 10 | <meta name="DC.Title.alt" lang="en" content="" />
|
|---|
| 11 | <meta name="DC.Subject" lang="en" content="spectral line" />
|
|---|
| 12 | <meta name="DC.Description" lang="en"
|
|---|
| 13 | content="Just some links and conatact details" />
|
|---|
| 14 | <meta name="DC.Date.created" scheme="ISO8601" content="2004-11-12" />
|
|---|
| 15 | <meta name="ATNF.Site" content="Marsfield" />
|
|---|
| 16 | <meta name="ATNF.AccessPermission" content="Public" />
|
|---|
| 17 | <meta name="ATNF.MetaVersion" content="1.0" />
|
|---|
| 18 | <?php standard_head(); ?>
|
|---|
| 19 | <STYLE TYPE="text/css">
|
|---|
| 20 | <!--
|
|---|
| 21 | B.asap {
|
|---|
| 22 | text-align: center;
|
|---|
| 23 | color: blue;
|
|---|
| 24 | }
|
|---|
| 25 | B.note {
|
|---|
| 26 | color: red;
|
|---|
| 27 | }
|
|---|
| 28 | PRE.commands {
|
|---|
| 29 | color: blue;
|
|---|
| 30 | font-size: smaller;
|
|---|
| 31 | }
|
|---|
| 32 | -->
|
|---|
| 33 | </STYLE>
|
|---|
| 34 | </head>
|
|---|
| 35 | <body bgcolor="#FFFFFF" text="#000000">
|
|---|
| 36 | <?php
|
|---|
| 37 | title_bar("atnf");
|
|---|
| 38 | title_crumbs("/computing/software/");
|
|---|
| 39 | ?>
|
|---|
| 40 | <!-- Start Content -->
|
|---|
| 41 | <h1><a href="index.html">ASAP</a> 'commands'</h1>
|
|---|
| 42 | <pre class="commands">
|
|---|
| [758] | 43 | ASAP> commands
|
|---|
| 44 | ----> commands()
|
|---|
| [664] | 45 |
|
|---|
| 46 | [The scan container]
|
|---|
| 47 | scantable - a container for integrations/scans
|
|---|
| 48 | (can open asap/rpfits/sdfits and ms files)
|
|---|
| 49 | copy - returns a copy of a scan
|
|---|
| 50 | get_scan - gets a specific scan out of a scantable
|
|---|
| [758] | 51 | (by name or number)
|
|---|
| [664] | 52 | summary - print info about the scantable contents
|
|---|
| 53 | set_cursor - set a specific Beam/IF/Pol 'cursor' for
|
|---|
| 54 | further use
|
|---|
| 55 | get_cursor - print out the current cursor position
|
|---|
| 56 | stats - get specified statistic of the spectra in
|
|---|
| 57 | the scantable
|
|---|
| 58 | stddev - get the standard deviation of the spectra
|
|---|
| 59 | in the scantable
|
|---|
| 60 | get_tsys - get the TSys
|
|---|
| 61 | get_time - get the timestamps of the integrations
|
|---|
| [758] | 62 | get_sourcename - get the source names of the scans
|
|---|
| [664] | 63 | get_unit - get the currnt unit
|
|---|
| 64 | set_unit - set the abcissa unit to be used from this
|
|---|
| 65 | point on
|
|---|
| 66 | get_abcissa - get the abcissa values and name for a given
|
|---|
| 67 | row (time)
|
|---|
| 68 | set_freqframe - set the frame info for the Spectral Axis
|
|---|
| 69 | (e.g. 'LSRK')
|
|---|
| 70 | set_doppler - set the doppler to be used from this point on
|
|---|
| 71 | set_instrument - set the instrument name
|
|---|
| 72 | get_fluxunit - get the brightness flux unit
|
|---|
| 73 | set_fluxunit - set the brightness flux unit
|
|---|
| 74 | create_mask - return an mask in the current unit
|
|---|
| 75 | for the given region. The specified regions
|
|---|
| 76 | are NOT masked
|
|---|
| 77 | get_restfreqs - get the current list of rest frequencies
|
|---|
| 78 | set_restfreqs - set a list of rest frequencies
|
|---|
| 79 | lines - print list of known spectral lines
|
|---|
| 80 | flag_spectrum - flag a whole Beam/IF/Pol
|
|---|
| 81 | save - save the scantable to disk as either 'ASAP'
|
|---|
| 82 | or 'SDFITS'
|
|---|
| 83 | nbeam,nif,nchan,npol - the number of beams/IFs/Pols/Chans
|
|---|
| [758] | 84 | nscan - the number of scans in the scantable
|
|---|
| 85 | nrow - te number of integrations in the scantable
|
|---|
| [664] | 86 | history - print the history of the scantable
|
|---|
| 87 | get_fit - get a fit which has been stored witnh the data
|
|---|
| 88 | average_time - return the (weighted) time average of a scan
|
|---|
| 89 | or a list of scans
|
|---|
| 90 | average_pol - average the polarisations together.
|
|---|
| 91 | The dimension won't be reduced and
|
|---|
| 92 | all polarisations will contain the
|
|---|
| 93 | averaged spectrum.
|
|---|
| [680] | 94 | auto_quotient - return the on/off quotient with
|
|---|
| 95 | automatic detection of the on/off scans
|
|---|
| [758] | 96 | (matched pairs and 1 off - n on)
|
|---|
| [664] | 97 | quotient - return the on/off quotient
|
|---|
| 98 | scale - return a scan scaled by a given factor
|
|---|
| 99 | add - return a scan with given value added
|
|---|
| 100 | bin - return a scan with binned channels
|
|---|
| 101 | resample - return a scan with resampled channels
|
|---|
| 102 | smooth - return the spectrally smoothed scan
|
|---|
| 103 | poly_baseline - fit a polynomial baseline to all Beams/IFs/Pols
|
|---|
| 104 | auto_poly_baseline - automatically fit a polynomial baseline
|
|---|
| 105 | gain_el - apply gain-elevation correction
|
|---|
| 106 | opacity - apply opacity correction
|
|---|
| 107 | convert_flux - convert to and from Jy and Kelvin brightness
|
|---|
| 108 | units
|
|---|
| 109 | freq_align - align spectra in frequency frame
|
|---|
| 110 | rotate_xyphase - rotate XY phase of cross correlation
|
|---|
| 111 | rotate_linpolphase - rotate the phase of the complex
|
|---|
| 112 | polarization O=Q+iU correlation
|
|---|
| [758] | 113 | freq_switch - perform frequency switching on the data
|
|---|
| 114 | stats - Determine the specified statistic, e.g. 'min'
|
|---|
| 115 | 'max', 'rms' etc.
|
|---|
| 116 | stddev - Determine the standard deviation of the current
|
|---|
| 117 | beam/if/pol
|
|---|
| 118 |
|
|---|
| [664] | 119 | [Math] Mainly functions which operate on more than one scantable
|
|---|
| 120 |
|
|---|
| 121 | average_time - return the (weighted) time average
|
|---|
| 122 | of a list of scans
|
|---|
| 123 | quotient - return the on/off quotient
|
|---|
| 124 | simple_math - simple mathematical operations on two scantables,
|
|---|
| 125 | 'add', 'sub', 'mul', 'div'
|
|---|
| 126 | [Fitting]
|
|---|
| 127 | fitter
|
|---|
| 128 | auto_fit - return a scan where the function is
|
|---|
| 129 | applied to all Beams/IFs/Pols.
|
|---|
| 130 | commit - return a new scan where the fits have been
|
|---|
| 131 | commited.
|
|---|
| 132 | fit - execute the actual fitting process
|
|---|
| 133 | store_fit - store the fit paramaters in the data (scantable)
|
|---|
| 134 | get_chi2 - get the Chi^2
|
|---|
| 135 | set_scan - set the scantable to be fit
|
|---|
| 136 | set_function - set the fitting function
|
|---|
| 137 | set_parameters - set the parameters for the function(s), and
|
|---|
| 138 | set if they should be held fixed during fitting
|
|---|
| 139 | set_gauss_parameters - same as above but specialised for individual
|
|---|
| 140 | gaussian components
|
|---|
| 141 | get_parameters - get the fitted parameters
|
|---|
| 142 | plot - plot the resulting fit and/or components and
|
|---|
| 143 | residual
|
|---|
| 144 | [Plotter]
|
|---|
| 145 | asapplotter - a plotter for asap, default plotter is
|
|---|
| 146 | called 'plotter'
|
|---|
| 147 | plot - plot a (list of) scantable
|
|---|
| 148 | save - save the plot to a file ('png' ,'ps' or 'eps')
|
|---|
| 149 | set_mode - set the state of the plotter, i.e.
|
|---|
| 150 | what is to be plotted 'colour stacked'
|
|---|
| 151 | and what 'panelled'
|
|---|
| 152 | set_cursor - only plot a selected part of the data
|
|---|
| [758] | 153 | set_range - set a 'zoom' window [xmin,xmax,ymin,ymax]
|
|---|
| [664] | 154 | set_legend - specify user labels for the legend indeces
|
|---|
| 155 | set_title - specify user labels for the panel indeces
|
|---|
| [758] | 156 | set_abcissa - specify a user label for the abcissa
|
|---|
| [664] | 157 | set_ordinate - specify a user label for the ordinate
|
|---|
| 158 | set_layout - specify the multi-panel layout (rows,cols)
|
|---|
| [758] | 159 | set_colors - specify a set of colours to use
|
|---|
| 160 | set_linestyles - specify a set of linestyles to use if only
|
|---|
| 161 | using one color
|
|---|
| 162 | set_mask - set a plotting mask for a specific polarization
|
|---|
| [664] | 163 |
|
|---|
| 164 | [Reading files]
|
|---|
| 165 | reader - access rpfits/sdfits files
|
|---|
| 166 | read - read in integrations
|
|---|
| 167 | summary - list info about all integrations
|
|---|
| 168 |
|
|---|
| 169 | [General]
|
|---|
| 170 | commands - this command
|
|---|
| 171 | print - print details about a variable
|
|---|
| 172 | list_scans - list all scantables created bt the user
|
|---|
| 173 | del - delete the given variable from memory
|
|---|
| 174 | range - create a list of values, e.g.
|
|---|
| 175 | range(3) = [0,1,2], range(2,5) = [2,3,4]
|
|---|
| 176 | help - print help for one of the listed functions
|
|---|
| 177 | execfile - execute an asap script, e.g. execfile('myscript')
|
|---|
| 178 | list_rcparameters - print out a list of possible values to be
|
|---|
| 179 | put into $HOME/.asaprc
|
|---|
| 180 | mask_and,mask_or,
|
|---|
| 181 | mask_not - boolean operations on masks created with
|
|---|
| 182 | scantable.create_mask
|
|---|
| 183 |
|
|---|
| 184 | Note:
|
|---|
| 185 | How to use this with help:
|
|---|
| 186 | # function 'summary'
|
|---|
| 187 | [xxx] is just a category
|
|---|
| 188 | Every 'sub-level' in this list should be replaces by a '.' Period when
|
|---|
| 189 | using help
|
|---|
| 190 | Example:
|
|---|
| 191 | ASAP> help scantable # to get info on ths scantable
|
|---|
| 192 | ASAP> help scantable.summary # to get help on the scantable's
|
|---|
| 193 | ASAP> help average_time
|
|---|
| 194 |
|
|---|
| [758] | 195 |
|
|---|
| [664] | 196 | </pre>
|
|---|
| 197 | <!-- End Content -->
|
|---|
| 198 | <?php footer(); ?>
|
|---|
| 199 | </body>
|
|---|
| 200 | </html>
|
|---|
