1 | //#--------------------------------------------------------------------------- |
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2 | //# SDMemTable.cc: A MemoryTable container for single dish integrations |
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3 | //#--------------------------------------------------------------------------- |
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4 | //# Copyright (C) 2004 |
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5 | //# ATNF |
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6 | //# |
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7 | //# This program is free software; you can redistribute it and/or modify it |
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8 | //# under the terms of the GNU General Public License as published by the Free |
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9 | //# Software Foundation; either version 2 of the License, or (at your option) |
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10 | //# any later version. |
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11 | //# |
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12 | //# This program is distributed in the hope that it will be useful, but |
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13 | //# WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 | //# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General |
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15 | //# Public License for more details. |
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16 | //# |
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17 | //# You should have received a copy of the GNU General Public License along |
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18 | //# with this program; if not, write to the Free Software Foundation, Inc., |
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19 | //# 675 Massachusetts Ave, Cambridge, MA 02139, USA. |
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20 | //# |
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21 | //# Correspondence concerning this software should be addressed as follows: |
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22 | //# Internet email: Malte.Marquarding@csiro.au |
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23 | //# Postal address: Malte Marquarding, |
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24 | //# Australia Telescope National Facility, |
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25 | //# P.O. Box 76, |
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26 | //# Epping, NSW, 2121, |
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27 | //# AUSTRALIA |
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28 | //# |
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29 | //# $Id: |
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30 | //#--------------------------------------------------------------------------- |
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31 | |
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32 | #include <map> |
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33 | |
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34 | #include <casa/aips.h> |
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35 | #include <casa/iostream.h> |
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36 | #include <casa/iomanip.h> |
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37 | #include <casa/Arrays/Array.h> |
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38 | #include <casa/Arrays/ArrayMath.h> |
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39 | #include <casa/Arrays/MaskArrMath.h> |
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40 | #include <casa/Arrays/ArrayLogical.h> |
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41 | #include <casa/Arrays/ArrayAccessor.h> |
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42 | #include <casa/Arrays/VectorSTLIterator.h> |
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43 | #include <casa/Arrays/Vector.h> |
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44 | #include <casa/BasicMath/Math.h> |
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45 | #include <casa/BasicSL/Constants.h> |
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46 | #include <casa/Quanta/MVAngle.h> |
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47 | |
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48 | #include <tables/Tables/TableParse.h> |
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49 | #include <tables/Tables/TableDesc.h> |
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50 | #include <tables/Tables/TableCopy.h> |
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51 | #include <tables/Tables/SetupNewTab.h> |
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52 | #include <tables/Tables/ScaColDesc.h> |
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53 | #include <tables/Tables/ArrColDesc.h> |
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54 | |
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55 | #include <tables/Tables/ExprNode.h> |
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56 | #include <tables/Tables/TableRecord.h> |
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57 | #include <measures/Measures/MFrequency.h> |
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58 | #include <measures/Measures/MeasTable.h> |
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59 | #include <coordinates/Coordinates/CoordinateUtil.h> |
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60 | #include <casa/Quanta/MVTime.h> |
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61 | #include <casa/Quanta/MVAngle.h> |
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62 | |
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63 | #include "SDDefs.h" |
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64 | #include "SDContainer.h" |
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65 | #include "MathUtils.h" |
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66 | #include "SDPol.h" |
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67 | #include "SDAttr.h" |
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68 | |
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69 | #include "SDMemTable.h" |
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70 | |
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71 | using namespace casa; |
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72 | using namespace asap; |
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73 | |
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74 | SDMemTable::SDMemTable() : |
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75 | IFSel_(0), |
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76 | beamSel_(0), |
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77 | polSel_(0) |
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78 | { |
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79 | setup(); |
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80 | attach(); |
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81 | } |
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82 | |
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83 | SDMemTable::SDMemTable(const std::string& name) : |
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84 | IFSel_(0), |
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85 | beamSel_(0), |
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86 | polSel_(0) |
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87 | { |
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88 | Table tab(name); |
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89 | Int version; |
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90 | tab.keywordSet().get("VERSION", version); |
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91 | if (version != version_) { |
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92 | throw(AipsError("Unsupported version of ASAP file.")); |
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93 | } |
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94 | table_ = tab.copyToMemoryTable("dummy"); |
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95 | attach(); |
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96 | } |
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97 | |
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98 | SDMemTable::SDMemTable(const SDMemTable& other, Bool clear) |
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99 | { |
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100 | table_ = other.table_.copyToMemoryTable(String("dummy")); |
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101 | // clear all rows() |
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102 | if (clear) { |
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103 | table_.removeRow(this->table_.rowNumbers()); |
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104 | IFSel_= 0; |
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105 | beamSel_= 0; |
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106 | polSel_= 0; |
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107 | } else { |
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108 | IFSel_= other.IFSel_; |
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109 | beamSel_= other.beamSel_; |
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110 | polSel_= other.polSel_; |
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111 | } |
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112 | |
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113 | attach(); |
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114 | } |
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115 | |
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116 | SDMemTable::SDMemTable(const Table& tab, const std::string& exprs) : |
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117 | IFSel_(0), |
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118 | beamSel_(0), |
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119 | polSel_(0) |
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120 | { |
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121 | Table t = tableCommand(exprs,tab); |
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122 | if (t.nrow() == 0) |
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123 | throw(AipsError("Query unsuccessful.")); |
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124 | table_ = t.copyToMemoryTable("dummy"); |
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125 | attach(); |
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126 | renumber(); |
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127 | } |
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128 | |
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129 | SDMemTable::~SDMemTable() |
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130 | { |
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131 | //cerr << "goodbye from SDMemTable @ " << this << endl; |
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132 | } |
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133 | |
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134 | SDMemTable SDMemTable::getScan(Int scanID) const |
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135 | { |
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136 | String cond("SELECT * from $1 WHERE SCANID == "); |
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137 | cond += String::toString(scanID); |
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138 | return SDMemTable(table_, cond); |
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139 | } |
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140 | |
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141 | SDMemTable &SDMemTable::operator=(const SDMemTable& other) |
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142 | { |
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143 | if (this != &other) { |
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144 | IFSel_= other.IFSel_; |
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145 | beamSel_= other.beamSel_; |
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146 | polSel_= other.polSel_; |
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147 | table_ = other.table_.copyToMemoryTable(String("dummy")); |
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148 | attach(); |
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149 | } |
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150 | return *this; |
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151 | } |
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152 | |
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153 | SDMemTable SDMemTable::getSource(const std::string& source) const |
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154 | { |
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155 | String cond("SELECT * from $1 WHERE SRCNAME == "); |
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156 | cond += source; |
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157 | return SDMemTable(table_, cond); |
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158 | } |
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159 | |
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160 | void SDMemTable::setup() |
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161 | { |
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162 | TableDesc td("", "1", TableDesc::Scratch); |
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163 | td.comment() = "A SDMemTable"; |
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164 | td.rwKeywordSet().define("VERSION", Int(version_)); |
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165 | |
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166 | td.addColumn(ScalarColumnDesc<Double>("TIME")); |
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167 | td.addColumn(ScalarColumnDesc<String>("SRCNAME")); |
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168 | td.addColumn(ArrayColumnDesc<Float>("SPECTRA")); |
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169 | td.addColumn(ArrayColumnDesc<uChar>("FLAGTRA")); |
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170 | td.addColumn(ArrayColumnDesc<Float>("TSYS")); |
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171 | td.addColumn(ArrayColumnDesc<Float>("STOKES")); |
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172 | td.addColumn(ScalarColumnDesc<Int>("SCANID")); |
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173 | td.addColumn(ScalarColumnDesc<Double>("INTERVAL")); |
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174 | td.addColumn(ArrayColumnDesc<uInt>("FREQID")); |
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175 | td.addColumn(ArrayColumnDesc<uInt>("RESTFREQID")); |
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176 | td.addColumn(ArrayColumnDesc<Double>("DIRECTION")); |
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177 | td.addColumn(ScalarColumnDesc<String>("FIELDNAME")); |
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178 | td.addColumn(ScalarColumnDesc<String>("TCALTIME")); |
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179 | td.addColumn(ArrayColumnDesc<Float>("TCAL")); |
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180 | td.addColumn(ScalarColumnDesc<Float>("AZIMUTH")); |
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181 | td.addColumn(ScalarColumnDesc<Float>("ELEVATION")); |
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182 | td.addColumn(ScalarColumnDesc<Float>("PARANGLE")); |
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183 | td.addColumn(ScalarColumnDesc<Int>("REFBEAM")); |
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184 | td.addColumn(ArrayColumnDesc<Int>("FITID")); |
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185 | |
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186 | // Now create Table SetUp from the description. |
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187 | SetupNewTable aNewTab("dummy", td, Table::New); |
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188 | |
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189 | // Bind the Stokes Virtual machine to the STOKES column Because we |
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190 | // don't know how many polarizations will be in the data at this |
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191 | // point, we must bind the Virtual Engine regardless. The STOKES |
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192 | // column won't be accessed if not appropriate (nPol=4) |
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193 | SDStokesEngine::registerClass(); |
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194 | SDStokesEngine stokesEngine(String("STOKES"), String("SPECTRA")); |
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195 | aNewTab.bindColumn("STOKES", stokesEngine); |
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196 | |
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197 | // Create Table |
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198 | table_ = Table(aNewTab, Table::Memory, 0); |
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199 | // add subtable |
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200 | TableDesc tdf("", "1", TableDesc::Scratch); |
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201 | tdf.addColumn(ArrayColumnDesc<String>("FUNCTIONS")); |
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202 | tdf.addColumn(ArrayColumnDesc<Int>("COMPONENTS")); |
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203 | tdf.addColumn(ArrayColumnDesc<Double>("PARAMETERS")); |
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204 | tdf.addColumn(ArrayColumnDesc<Bool>("PARMASK")); |
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205 | tdf.addColumn(ArrayColumnDesc<String>("FRAMEINFO")); |
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206 | SetupNewTable fittab("fits", tdf, Table::New); |
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207 | Table fitTable(fittab, Table::Memory); |
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208 | table_.rwKeywordSet().defineTable("FITS", fitTable); |
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209 | |
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210 | TableDesc tdh("", "1", TableDesc::Scratch); |
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211 | tdh.addColumn(ScalarColumnDesc<String>("ITEM")); |
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212 | SetupNewTable histtab("hist", tdh, Table::New); |
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213 | Table histTable(histtab, Table::Memory); |
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214 | table_.rwKeywordSet().defineTable("HISTORY", histTable); |
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215 | } |
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216 | |
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217 | void SDMemTable::attach() |
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218 | { |
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219 | timeCol_.attach(table_, "TIME"); |
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220 | srcnCol_.attach(table_, "SRCNAME"); |
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221 | specCol_.attach(table_, "SPECTRA"); |
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222 | flagsCol_.attach(table_, "FLAGTRA"); |
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223 | tsCol_.attach(table_, "TSYS"); |
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224 | stokesCol_.attach(table_, "STOKES"); |
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225 | scanCol_.attach(table_, "SCANID"); |
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226 | integrCol_.attach(table_, "INTERVAL"); |
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227 | freqidCol_.attach(table_, "FREQID"); |
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228 | restfreqidCol_.attach(table_, "RESTFREQID"); |
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229 | dirCol_.attach(table_, "DIRECTION"); |
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230 | fldnCol_.attach(table_, "FIELDNAME"); |
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231 | tcaltCol_.attach(table_, "TCALTIME"); |
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232 | tcalCol_.attach(table_, "TCAL"); |
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233 | azCol_.attach(table_, "AZIMUTH"); |
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234 | elCol_.attach(table_, "ELEVATION"); |
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235 | paraCol_.attach(table_, "PARANGLE"); |
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236 | rbeamCol_.attach(table_, "REFBEAM"); |
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237 | fitCol_.attach(table_,"FITID"); |
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238 | } |
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239 | |
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240 | |
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241 | std::string SDMemTable::getSourceName(Int whichRow) const |
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242 | { |
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243 | String name; |
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244 | srcnCol_.get(whichRow, name); |
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245 | return name; |
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246 | } |
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247 | |
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248 | std::string SDMemTable::getTime(Int whichRow, Bool showDate) const |
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249 | { |
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250 | Double tm; |
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251 | if (whichRow > -1) { |
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252 | timeCol_.get(whichRow, tm); |
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253 | } else { |
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254 | table_.keywordSet().get("UTC",tm); |
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255 | } |
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256 | MVTime mvt(tm); |
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257 | if (showDate) |
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258 | mvt.setFormat(MVTime::YMD); |
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259 | else |
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260 | mvt.setFormat(MVTime::TIME); |
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261 | ostringstream oss; |
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262 | oss << mvt; |
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263 | return String(oss); |
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264 | } |
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265 | |
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266 | double SDMemTable::getInterval(Int whichRow) const |
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267 | { |
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268 | Double intval; |
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269 | integrCol_.get(whichRow, intval); |
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270 | return intval; |
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271 | } |
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272 | |
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273 | bool SDMemTable::setIF(Int whichIF) |
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274 | { |
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275 | if ( whichIF >= 0 && whichIF < nIF()) { |
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276 | IFSel_ = whichIF; |
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277 | return true; |
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278 | } |
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279 | return false; |
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280 | } |
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281 | |
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282 | bool SDMemTable::setBeam(Int whichBeam) |
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283 | { |
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284 | if ( whichBeam >= 0 && whichBeam < nBeam()) { |
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285 | beamSel_ = whichBeam; |
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286 | return true; |
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287 | } |
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288 | return false; |
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289 | } |
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290 | |
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291 | bool SDMemTable::setPol(Int whichPol) |
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292 | { |
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293 | if ( whichPol >= 0 && whichPol < nPol()) { |
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294 | polSel_ = whichPol; |
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295 | return true; |
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296 | } |
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297 | return false; |
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298 | } |
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299 | |
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300 | void SDMemTable::resetCursor() |
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301 | { |
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302 | polSel_ = 0; |
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303 | IFSel_ = 0; |
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304 | beamSel_ = 0; |
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305 | } |
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306 | |
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307 | std::vector<bool> SDMemTable::getMask(Int whichRow) const |
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308 | { |
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309 | |
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310 | std::vector<bool> mask; |
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311 | |
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312 | Array<uChar> arr; |
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313 | flagsCol_.get(whichRow, arr); |
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314 | |
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315 | ArrayAccessor<uChar, Axis<asap::BeamAxis> > aa0(arr); |
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316 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam |
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317 | ArrayAccessor<uChar, Axis<asap::IFAxis> > aa1(aa0); |
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318 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF |
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319 | ArrayAccessor<uChar, Axis<asap::PolAxis> > aa2(aa1); |
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320 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol |
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321 | |
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322 | for (ArrayAccessor<uChar, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) { |
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323 | bool out =!static_cast<bool>(*i); |
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324 | mask.push_back(out); |
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325 | } |
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326 | return mask; |
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327 | } |
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328 | |
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329 | |
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330 | |
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331 | std::vector<float> SDMemTable::getSpectrum(Int whichRow) const |
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332 | { |
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333 | Array<Float> arr; |
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334 | specCol_.get(whichRow, arr); |
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335 | return getFloatSpectrum(arr); |
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336 | } |
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337 | |
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338 | |
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339 | int SDMemTable::nStokes() const |
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340 | { |
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341 | return stokesCol_.shape(0).nelements(); // All rows same shape |
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342 | } |
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343 | |
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344 | |
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345 | std::vector<float> SDMemTable::getStokesSpectrum(Int whichRow, |
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346 | Bool doPol) const |
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347 | // |
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348 | // Gets one STokes parameter depending on cursor polSel location |
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349 | // doPol=False : I,Q,U,V |
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350 | // doPol=True : I,P,PA,V ; P = sqrt(Q**2+U**2), PA = 0.5*atan2(Q,U) |
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351 | // |
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352 | { |
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353 | AlwaysAssert(asap::nAxes==4,AipsError); |
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354 | if (nPol()!=1 && nPol()!=2 && nPol()!=4) { |
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355 | throw (AipsError("You must have 1,2 or 4 polarizations to get the Stokes parameters")); |
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356 | } |
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357 | |
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358 | // For full conversion we are only supporting linears at the moment |
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359 | |
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360 | if (nPol() > 2) { |
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361 | String antName; |
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362 | table_.keywordSet().get("AntennaName", antName); |
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363 | Instrument inst = SDAttr::convertInstrument (antName, True); |
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364 | SDAttr sdAtt; |
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365 | if (sdAtt.feedPolType(inst) != LINEAR) { |
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366 | throw(AipsError("Only linear polarizations are supported")); |
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367 | } |
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368 | } |
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369 | |
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370 | Array<Float> arr; |
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371 | stokesCol_.get(whichRow, arr); |
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372 | |
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373 | if (doPol && (polSel_==1 || polSel_==2)) { // Q,U --> P, P.A. |
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374 | |
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375 | // Set current cursor location |
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376 | |
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377 | const IPosition& shape = arr.shape(); |
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378 | IPosition start, end; |
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379 | getCursorSlice(start, end, shape); |
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380 | |
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381 | // Get Q and U slices |
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382 | |
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383 | Array<Float> Q = SDPolUtil::getStokesSlice(arr,start,end,"Q"); |
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384 | Array<Float> U = SDPolUtil::getStokesSlice(arr,start,end,"U"); |
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385 | |
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386 | // Compute output |
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387 | |
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388 | Array<Float> out; |
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389 | if (polSel_==1) { // P |
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390 | out = SDPolUtil::polarizedIntensity(Q,U); |
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391 | } else if (polSel_==2) { // P.A. |
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392 | out = SDPolUtil::positionAngle(Q,U); |
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393 | } |
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394 | |
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395 | // Copy to output |
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396 | |
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397 | IPosition vecShape(1,shape(asap::ChanAxis)); |
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398 | Vector<Float> outV = out.reform(vecShape); |
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399 | std::vector<float> stlout; |
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400 | outV.tovector(stlout); |
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401 | return stlout; |
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402 | |
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403 | } else { |
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404 | // Selects at the cursor location |
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405 | return getFloatSpectrum(arr); |
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406 | } |
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407 | } |
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408 | |
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409 | std::string SDMemTable::getPolarizationLabel(Bool linear, Bool stokes, |
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410 | Bool linPol, Int polIdx) const |
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411 | { |
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412 | uInt idx = polSel_; |
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413 | if (polIdx >=0) idx = polIdx; |
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414 | return SDPolUtil::polarizationLabel(idx, linear, stokes, linPol); |
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415 | } |
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416 | |
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417 | |
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418 | |
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419 | std::vector<float> SDMemTable::stokesToPolSpectrum(Int whichRow, |
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420 | Bool toLinear, |
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421 | Int polIdx) const |
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422 | // |
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423 | // polIdx |
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424 | // 0:3 -> RR,LL,Real(RL),Imag(RL) |
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425 | // XX,YY,Real(XY),Image(XY) |
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426 | // |
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427 | // Gets only |
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428 | // RR = I + V |
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429 | // LL = I - V |
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430 | // at the moment |
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431 | // |
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432 | { |
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433 | AlwaysAssert(asap::nAxes==4,AipsError); |
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434 | if (nStokes()!=4) { |
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435 | throw (AipsError("You must have 4 Stokes to convert to linear or circular")); |
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436 | } |
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437 | // |
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438 | Array<Float> arr, out; |
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439 | stokesCol_.get(whichRow, arr); |
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440 | |
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441 | // Set current cursor location |
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442 | |
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443 | const IPosition& shape = arr.shape(); |
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444 | IPosition start, end; |
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445 | getCursorSlice(start, end, shape); |
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446 | |
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447 | // Get the slice |
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448 | |
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449 | if (toLinear) { |
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450 | throw(AipsError("Conversion to linears not yet supported")); |
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451 | } else { |
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452 | uInt selection = polSel_; |
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453 | if (polIdx > -1) selection = polIdx; |
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454 | Bool doRR = (selection==0); |
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455 | if (selection>1) { |
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456 | throw(AipsError("Only conversion to RR & LL is currently supported")); |
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457 | } |
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458 | |
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459 | // Get I and V slices |
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460 | Array<Float> I = SDPolUtil::getStokesSlice(arr,start,end,"I"); |
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461 | Array<Float> V = SDPolUtil::getStokesSlice(arr,start,end,"V"); |
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462 | |
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463 | // Compute output |
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464 | out = SDPolUtil::circularPolarizationFromStokes(I, V, doRR); |
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465 | } |
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466 | |
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467 | // Copy to output |
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468 | IPosition vecShape(1,shape(asap::ChanAxis)); |
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469 | Vector<Float> outV = out.reform(vecShape); |
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470 | std::vector<float> stlout; |
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471 | outV.tovector(stlout); |
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472 | // |
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473 | return stlout; |
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474 | } |
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475 | |
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476 | |
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477 | |
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478 | |
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479 | Array<Float> SDMemTable::getStokesSpectrum(Int whichRow, Int iBeam, Int iIF) const |
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480 | { |
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481 | |
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482 | // Get data |
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483 | |
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484 | Array<Float> arr; |
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485 | stokesCol_.get(whichRow, arr); |
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486 | |
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487 | // Set current cursor location and overwrite polarization axis |
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488 | |
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489 | const IPosition& shape = arr.shape(); |
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490 | IPosition start(shape.nelements(),0); |
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491 | IPosition end(shape-1); |
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492 | if (iBeam!=-1) { |
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493 | start(asap::BeamAxis) = iBeam; |
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494 | end(asap::BeamAxis) = iBeam; |
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495 | } |
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496 | if (iIF!=-1) { |
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497 | start(asap::IFAxis) = iIF; |
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498 | end(asap::IFAxis) = iIF; |
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499 | } |
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500 | |
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501 | // Get slice |
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502 | |
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503 | return arr(start,end); |
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504 | } |
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505 | |
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506 | |
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507 | std::vector<string> SDMemTable::getCoordInfo() const |
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508 | { |
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509 | String un; |
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510 | Table t = table_.keywordSet().asTable("FREQUENCIES"); |
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511 | String sunit; |
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512 | t.keywordSet().get("UNIT",sunit); |
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513 | String dpl; |
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514 | t.keywordSet().get("DOPPLER",dpl); |
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515 | if (dpl == "") dpl = "RADIO"; |
---|
516 | String rfrm; |
---|
517 | t.keywordSet().get("REFFRAME",rfrm); |
---|
518 | std::vector<string> inf; |
---|
519 | inf.push_back(sunit); |
---|
520 | inf.push_back(rfrm); |
---|
521 | inf.push_back(dpl); |
---|
522 | t.keywordSet().get("BASEREFFRAME",rfrm); |
---|
523 | inf.push_back(rfrm); |
---|
524 | return inf; |
---|
525 | } |
---|
526 | |
---|
527 | void SDMemTable::setCoordInfo(std::vector<string> theinfo) |
---|
528 | { |
---|
529 | std::vector<string>::iterator it; |
---|
530 | String un,rfrm, brfrm,dpl; |
---|
531 | un = theinfo[0]; // Abcissa unit |
---|
532 | rfrm = theinfo[1]; // Active (or conversion) frame |
---|
533 | dpl = theinfo[2]; // Doppler |
---|
534 | brfrm = theinfo[3]; // Base frame |
---|
535 | Table t = table_.rwKeywordSet().asTable("FREQUENCIES"); |
---|
536 | |
---|
537 | Vector<Double> rstf; |
---|
538 | t.keywordSet().get("RESTFREQS",rstf); |
---|
539 | |
---|
540 | Bool canDo = True; |
---|
541 | Unit u1("km/s");Unit u2("Hz"); |
---|
542 | if (Unit(un) == u1) { |
---|
543 | Vector<Double> rstf; |
---|
544 | t.keywordSet().get("RESTFREQS",rstf); |
---|
545 | if (rstf.nelements() == 0) { |
---|
546 | throw(AipsError("Can't set unit to km/s if no restfrequencies are specified")); |
---|
547 | } |
---|
548 | } else if (Unit(un) != u2 && un != "") { |
---|
549 | throw(AipsError("Unit not conformant with Spectral Coordinates")); |
---|
550 | } |
---|
551 | t.rwKeywordSet().define("UNIT", un); |
---|
552 | |
---|
553 | MFrequency::Types mdr; |
---|
554 | if (!MFrequency::getType(mdr, rfrm)) { |
---|
555 | |
---|
556 | Int a,b;const uInt* c; |
---|
557 | const String* valid = MFrequency::allMyTypes(a, b, c); |
---|
558 | String pfix = "Please specify a legal frame type. Types are\n"; |
---|
559 | throw(AipsError(pfix+(*valid))); |
---|
560 | } else { |
---|
561 | t.rwKeywordSet().define("REFFRAME",rfrm); |
---|
562 | } |
---|
563 | |
---|
564 | MDoppler::Types dtype; |
---|
565 | dpl.upcase(); |
---|
566 | if (!MDoppler::getType(dtype, dpl)) { |
---|
567 | throw(AipsError("Doppler type unknown")); |
---|
568 | } else { |
---|
569 | t.rwKeywordSet().define("DOPPLER",dpl); |
---|
570 | } |
---|
571 | |
---|
572 | if (!MFrequency::getType(mdr, brfrm)) { |
---|
573 | Int a,b;const uInt* c; |
---|
574 | const String* valid = MFrequency::allMyTypes(a, b, c); |
---|
575 | String pfix = "Please specify a legal frame type. Types are\n"; |
---|
576 | throw(AipsError(pfix+(*valid))); |
---|
577 | } else { |
---|
578 | t.rwKeywordSet().define("BASEREFFRAME",brfrm); |
---|
579 | } |
---|
580 | } |
---|
581 | |
---|
582 | |
---|
583 | std::vector<double> SDMemTable::getAbcissa(Int whichRow) const |
---|
584 | { |
---|
585 | std::vector<double> abc(nChan()); |
---|
586 | |
---|
587 | // Get header units keyword |
---|
588 | Table t = table_.keywordSet().asTable("FREQUENCIES"); |
---|
589 | String sunit; |
---|
590 | t.keywordSet().get("UNIT",sunit); |
---|
591 | if (sunit == "") sunit = "pixel"; |
---|
592 | Unit u(sunit); |
---|
593 | |
---|
594 | // Easy if just wanting pixels |
---|
595 | if (sunit==String("pixel")) { |
---|
596 | // assume channels/pixels |
---|
597 | std::vector<double>::iterator it; |
---|
598 | uInt i=0; |
---|
599 | for (it = abc.begin(); it != abc.end(); ++it) { |
---|
600 | (*it) = Double(i++); |
---|
601 | } |
---|
602 | return abc; |
---|
603 | } |
---|
604 | |
---|
605 | // Continue with km/s or Hz. Get FreqIDs |
---|
606 | Vector<uInt> freqIDs; |
---|
607 | freqidCol_.get(whichRow, freqIDs); |
---|
608 | uInt freqID = freqIDs(IFSel_); |
---|
609 | restfreqidCol_.get(whichRow, freqIDs); |
---|
610 | uInt restFreqID = freqIDs(IFSel_); |
---|
611 | |
---|
612 | // Get SpectralCoordinate, set reference frame conversion, |
---|
613 | // velocity conversion, and rest freq state |
---|
614 | |
---|
615 | SpectralCoordinate spc = getSpectralCoordinate(freqID, restFreqID, whichRow); |
---|
616 | Vector<Double> pixel(nChan()); |
---|
617 | indgen(pixel); |
---|
618 | |
---|
619 | if (u == Unit("km/s")) { |
---|
620 | Vector<Double> world; |
---|
621 | spc.pixelToVelocity(world,pixel); |
---|
622 | std::vector<double>::iterator it; |
---|
623 | uInt i = 0; |
---|
624 | for (it = abc.begin(); it != abc.end(); ++it) { |
---|
625 | (*it) = world[i]; |
---|
626 | i++; |
---|
627 | } |
---|
628 | } else if (u == Unit("Hz")) { |
---|
629 | |
---|
630 | // Set world axis units |
---|
631 | Vector<String> wau(1); wau = u.getName(); |
---|
632 | spc.setWorldAxisUnits(wau); |
---|
633 | |
---|
634 | std::vector<double>::iterator it; |
---|
635 | Double tmp; |
---|
636 | uInt i = 0; |
---|
637 | for (it = abc.begin(); it != abc.end(); ++it) { |
---|
638 | spc.toWorld(tmp,pixel[i]); |
---|
639 | (*it) = tmp; |
---|
640 | i++; |
---|
641 | } |
---|
642 | } |
---|
643 | return abc; |
---|
644 | } |
---|
645 | |
---|
646 | std::string SDMemTable::getAbcissaString(Int whichRow) const |
---|
647 | { |
---|
648 | Table t = table_.keywordSet().asTable("FREQUENCIES"); |
---|
649 | |
---|
650 | String sunit; |
---|
651 | t.keywordSet().get("UNIT",sunit); |
---|
652 | if (sunit == "") sunit = "pixel"; |
---|
653 | Unit u(sunit); |
---|
654 | |
---|
655 | Vector<uInt> freqIDs; |
---|
656 | freqidCol_.get(whichRow, freqIDs); |
---|
657 | uInt freqID = freqIDs(IFSel_); |
---|
658 | restfreqidCol_.get(whichRow, freqIDs); |
---|
659 | uInt restFreqID = freqIDs(IFSel_); |
---|
660 | |
---|
661 | // Get SpectralCoordinate, with frame, velocity, rest freq state set |
---|
662 | SpectralCoordinate spc = getSpectralCoordinate(freqID, restFreqID, whichRow); |
---|
663 | |
---|
664 | String s = "Channel"; |
---|
665 | if (u == Unit("km/s")) { |
---|
666 | s = CoordinateUtil::axisLabel(spc,0,True,True,True); |
---|
667 | } else if (u == Unit("Hz")) { |
---|
668 | Vector<String> wau(1);wau = u.getName(); |
---|
669 | spc.setWorldAxisUnits(wau); |
---|
670 | |
---|
671 | s = CoordinateUtil::axisLabel(spc,0,True,True,False); |
---|
672 | } |
---|
673 | return s; |
---|
674 | } |
---|
675 | |
---|
676 | void SDMemTable::setSpectrum(std::vector<float> spectrum, int whichRow) |
---|
677 | { |
---|
678 | Array<Float> arr; |
---|
679 | specCol_.get(whichRow, arr); |
---|
680 | if (spectrum.size() != arr.shape()(asap::ChanAxis)) { |
---|
681 | throw(AipsError("Attempting to set spectrum with incorrect length.")); |
---|
682 | } |
---|
683 | |
---|
684 | // Setup accessors |
---|
685 | ArrayAccessor<Float, Axis<asap::BeamAxis> > aa0(arr); |
---|
686 | aa0.reset(aa0.begin(uInt(beamSel_))); // Beam selection |
---|
687 | ArrayAccessor<Float, Axis<asap::IFAxis> > aa1(aa0); |
---|
688 | aa1.reset(aa1.begin(uInt(IFSel_))); // IF selection |
---|
689 | ArrayAccessor<Float, Axis<asap::PolAxis> > aa2(aa1); |
---|
690 | aa2.reset(aa2.begin(uInt(polSel_))); // Pol selection |
---|
691 | |
---|
692 | // Iterate |
---|
693 | std::vector<float>::iterator it = spectrum.begin(); |
---|
694 | for (ArrayAccessor<Float, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) { |
---|
695 | (*i) = Float(*it); |
---|
696 | it++; |
---|
697 | } |
---|
698 | specCol_.put(whichRow, arr); |
---|
699 | } |
---|
700 | |
---|
701 | void SDMemTable::getSpectrum(Vector<Float>& spectrum, Int whichRow) const |
---|
702 | { |
---|
703 | Array<Float> arr; |
---|
704 | specCol_.get(whichRow, arr); |
---|
705 | |
---|
706 | // Iterate and extract |
---|
707 | spectrum.resize(arr.shape()(3)); |
---|
708 | ArrayAccessor<Float, Axis<asap::BeamAxis> > aa0(arr); |
---|
709 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam |
---|
710 | ArrayAccessor<Float, Axis<asap::IFAxis> > aa1(aa0); |
---|
711 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF |
---|
712 | ArrayAccessor<Float, Axis<asap::PolAxis> > aa2(aa1); |
---|
713 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol |
---|
714 | |
---|
715 | ArrayAccessor<Float, Axis<asap::BeamAxis> > va(spectrum); |
---|
716 | for (ArrayAccessor<Float, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) { |
---|
717 | (*va) = (*i); |
---|
718 | va++; |
---|
719 | } |
---|
720 | } |
---|
721 | |
---|
722 | |
---|
723 | /* |
---|
724 | void SDMemTable::getMask(Vector<Bool>& mask, Int whichRow) const { |
---|
725 | Array<uChar> arr; |
---|
726 | flagsCol_.get(whichRow, arr); |
---|
727 | mask.resize(arr.shape()(3)); |
---|
728 | |
---|
729 | ArrayAccessor<uChar, Axis<asap::BeamAxis> > aa0(arr); |
---|
730 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam |
---|
731 | ArrayAccessor<uChar, Axis<asap::IFAxis> > aa1(aa0); |
---|
732 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF |
---|
733 | ArrayAccessor<uChar, Axis<asap::PolAxis> > aa2(aa1); |
---|
734 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol |
---|
735 | |
---|
736 | Bool useUserMask = ( chanMask_.size() == arr.shape()(3) ); |
---|
737 | |
---|
738 | ArrayAccessor<Bool, Axis<asap::BeamAxis> > va(mask); |
---|
739 | std::vector<bool> tmp; |
---|
740 | tmp = chanMask_; // WHY the fxxx do I have to make a copy here. The |
---|
741 | // iterator should work on chanMask_?? |
---|
742 | std::vector<bool>::iterator miter; |
---|
743 | miter = tmp.begin(); |
---|
744 | |
---|
745 | for (ArrayAccessor<uChar, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) { |
---|
746 | bool out =!static_cast<bool>(*i); |
---|
747 | if (useUserMask) { |
---|
748 | out = out && (*miter); |
---|
749 | miter++; |
---|
750 | } |
---|
751 | (*va) = out; |
---|
752 | va++; |
---|
753 | } |
---|
754 | } |
---|
755 | */ |
---|
756 | |
---|
757 | MaskedArray<Float> SDMemTable::rowAsMaskedArray(uInt whichRow, |
---|
758 | Bool toStokes) const |
---|
759 | { |
---|
760 | // Get flags |
---|
761 | Array<uChar> farr; |
---|
762 | flagsCol_.get(whichRow, farr); |
---|
763 | |
---|
764 | // Get data and convert mask to Bool |
---|
765 | Array<Float> arr; |
---|
766 | Array<Bool> mask; |
---|
767 | if (toStokes) { |
---|
768 | stokesCol_.get(whichRow, arr); |
---|
769 | |
---|
770 | Array<Bool> tMask(farr.shape()); |
---|
771 | convertArray(tMask, farr); |
---|
772 | mask = SDPolUtil::stokesData (tMask, True); |
---|
773 | } else { |
---|
774 | specCol_.get(whichRow, arr); |
---|
775 | mask.resize(farr.shape()); |
---|
776 | convertArray(mask, farr); |
---|
777 | } |
---|
778 | |
---|
779 | return MaskedArray<Float>(arr,!mask); |
---|
780 | } |
---|
781 | |
---|
782 | Float SDMemTable::getTsys(Int whichRow) const |
---|
783 | { |
---|
784 | Array<Float> arr; |
---|
785 | tsCol_.get(whichRow, arr); |
---|
786 | Float out; |
---|
787 | |
---|
788 | IPosition ip(arr.shape()); |
---|
789 | ip(asap::BeamAxis) = beamSel_; |
---|
790 | ip(asap::IFAxis) = IFSel_; |
---|
791 | ip(asap::PolAxis) = polSel_; |
---|
792 | ip(asap::ChanAxis)=0; // First channel only |
---|
793 | |
---|
794 | out = arr(ip); |
---|
795 | return out; |
---|
796 | } |
---|
797 | |
---|
798 | MDirection SDMemTable::getDirection(Int whichRow, Bool refBeam) const |
---|
799 | { |
---|
800 | MDirection::Types mdr = getDirectionReference(); |
---|
801 | Array<Double> posit; |
---|
802 | dirCol_.get(whichRow,posit); |
---|
803 | Vector<Double> wpos(2); |
---|
804 | Int rb; |
---|
805 | rbeamCol_.get(whichRow,rb); |
---|
806 | wpos[0] = posit(IPosition(2,beamSel_,0)); |
---|
807 | wpos[1] = posit(IPosition(2,beamSel_,1)); |
---|
808 | if (refBeam && rb > -1) { // use refBeam instead if it exists |
---|
809 | wpos[0] = posit(IPosition(2,rb,0)); |
---|
810 | wpos[1] = posit(IPosition(2,rb,1)); |
---|
811 | } |
---|
812 | |
---|
813 | Quantum<Double> lon(wpos[0],Unit(String("rad"))); |
---|
814 | Quantum<Double> lat(wpos[1],Unit(String("rad"))); |
---|
815 | return MDirection(lon, lat, mdr); |
---|
816 | } |
---|
817 | |
---|
818 | MEpoch SDMemTable::getEpoch(Int whichRow) const |
---|
819 | { |
---|
820 | MEpoch::Types met = getTimeReference(); |
---|
821 | |
---|
822 | Double obstime; |
---|
823 | timeCol_.get(whichRow,obstime); |
---|
824 | MVEpoch tm2(Quantum<Double>(obstime, Unit(String("d")))); |
---|
825 | return MEpoch(tm2, met); |
---|
826 | } |
---|
827 | |
---|
828 | MPosition SDMemTable::getAntennaPosition () const |
---|
829 | { |
---|
830 | Vector<Double> antpos; |
---|
831 | table_.keywordSet().get("AntennaPosition", antpos); |
---|
832 | MVPosition mvpos(antpos(0),antpos(1),antpos(2)); |
---|
833 | return MPosition(mvpos); |
---|
834 | } |
---|
835 | |
---|
836 | |
---|
837 | SpectralCoordinate SDMemTable::getSpectralCoordinate(uInt freqID) const |
---|
838 | { |
---|
839 | |
---|
840 | Table t = table_.keywordSet().asTable("FREQUENCIES"); |
---|
841 | if (freqID> t.nrow() ) { |
---|
842 | throw(AipsError("SDMemTable::getSpectralCoordinate - freqID out of range")); |
---|
843 | } |
---|
844 | |
---|
845 | Double rp,rv,inc; |
---|
846 | String rf; |
---|
847 | ROScalarColumn<Double> rpc(t, "REFPIX"); |
---|
848 | ROScalarColumn<Double> rvc(t, "REFVAL"); |
---|
849 | ROScalarColumn<Double> incc(t, "INCREMENT"); |
---|
850 | t.keywordSet().get("BASEREFFRAME",rf); |
---|
851 | |
---|
852 | // Create SpectralCoordinate (units Hz) |
---|
853 | MFrequency::Types mft; |
---|
854 | if (!MFrequency::getType(mft, rf)) { |
---|
855 | ostringstream oss; |
---|
856 | pushLog("WARNING: Frequency type unknown assuming TOPO"); |
---|
857 | mft = MFrequency::TOPO; |
---|
858 | } |
---|
859 | rpc.get(freqID, rp); |
---|
860 | rvc.get(freqID, rv); |
---|
861 | incc.get(freqID, inc); |
---|
862 | |
---|
863 | SpectralCoordinate spec(mft,rv,inc,rp); |
---|
864 | return spec; |
---|
865 | } |
---|
866 | |
---|
867 | |
---|
868 | SpectralCoordinate SDMemTable::getSpectralCoordinate(uInt freqID, |
---|
869 | uInt restFreqID, |
---|
870 | uInt whichRow) const |
---|
871 | { |
---|
872 | |
---|
873 | // Create basic SC |
---|
874 | SpectralCoordinate spec = getSpectralCoordinate (freqID); |
---|
875 | |
---|
876 | Table t = table_.keywordSet().asTable("FREQUENCIES"); |
---|
877 | |
---|
878 | // Set rest frequency |
---|
879 | Vector<Double> restFreqIDs; |
---|
880 | t.keywordSet().get("RESTFREQS",restFreqIDs); |
---|
881 | if (restFreqID < restFreqIDs.nelements()) { // Should always be true |
---|
882 | spec.setRestFrequency(restFreqIDs(restFreqID),True); |
---|
883 | } |
---|
884 | |
---|
885 | // Set up frame conversion layer |
---|
886 | String frm; |
---|
887 | t.keywordSet().get("REFFRAME",frm); |
---|
888 | if (frm == "") frm = "TOPO"; |
---|
889 | MFrequency::Types mtype; |
---|
890 | if (!MFrequency::getType(mtype, frm)) { |
---|
891 | // Should never happen |
---|
892 | pushLog("WARNING: Frequency type unknown assuming TOPO"); |
---|
893 | mtype = MFrequency::TOPO; |
---|
894 | } |
---|
895 | |
---|
896 | // Set reference frame conversion (requires row) |
---|
897 | MDirection dir = getDirection(whichRow); |
---|
898 | MEpoch epoch = getEpoch(whichRow); |
---|
899 | MPosition pos = getAntennaPosition(); |
---|
900 | |
---|
901 | if (!spec.setReferenceConversion(mtype,epoch,pos,dir)) { |
---|
902 | throw(AipsError("Couldn't convert frequency frame.")); |
---|
903 | } |
---|
904 | |
---|
905 | // Now velocity conversion if appropriate |
---|
906 | String unitStr; |
---|
907 | t.keywordSet().get("UNIT",unitStr); |
---|
908 | |
---|
909 | String dpl; |
---|
910 | t.keywordSet().get("DOPPLER",dpl); |
---|
911 | MDoppler::Types dtype; |
---|
912 | MDoppler::getType(dtype, dpl); |
---|
913 | |
---|
914 | // Only set velocity unit if non-blank and non-Hz |
---|
915 | if (!unitStr.empty()) { |
---|
916 | Unit unitU(unitStr); |
---|
917 | if (unitU==Unit("Hz")) { |
---|
918 | } else { |
---|
919 | spec.setVelocity(unitStr, dtype); |
---|
920 | } |
---|
921 | } |
---|
922 | |
---|
923 | return spec; |
---|
924 | } |
---|
925 | |
---|
926 | |
---|
927 | Bool SDMemTable::setCoordinate(const SpectralCoordinate& speccord, |
---|
928 | uInt freqID) { |
---|
929 | Table t = table_.rwKeywordSet().asTable("FREQUENCIES"); |
---|
930 | if (freqID > t.nrow() ) { |
---|
931 | throw(AipsError("SDMemTable::setCoordinate - coord no out of range")); |
---|
932 | } |
---|
933 | ScalarColumn<Double> rpc(t, "REFPIX"); |
---|
934 | ScalarColumn<Double> rvc(t, "REFVAL"); |
---|
935 | ScalarColumn<Double> incc(t, "INCREMENT"); |
---|
936 | |
---|
937 | rpc.put(freqID, speccord.referencePixel()[0]); |
---|
938 | rvc.put(freqID, speccord.referenceValue()[0]); |
---|
939 | incc.put(freqID, speccord.increment()[0]); |
---|
940 | |
---|
941 | return True; |
---|
942 | } |
---|
943 | |
---|
944 | Int SDMemTable::nCoordinates() const |
---|
945 | { |
---|
946 | return table_.keywordSet().asTable("FREQUENCIES").nrow(); |
---|
947 | } |
---|
948 | |
---|
949 | |
---|
950 | std::vector<double> SDMemTable::getRestFreqs() const |
---|
951 | { |
---|
952 | Table t = table_.keywordSet().asTable("FREQUENCIES"); |
---|
953 | Vector<Double> tvec; |
---|
954 | t.keywordSet().get("RESTFREQS",tvec); |
---|
955 | std::vector<double> stlout; |
---|
956 | tvec.tovector(stlout); |
---|
957 | return stlout; |
---|
958 | } |
---|
959 | |
---|
960 | bool SDMemTable::putSDFreqTable(const SDFrequencyTable& sdft) |
---|
961 | { |
---|
962 | TableDesc td("", "1", TableDesc::Scratch); |
---|
963 | td.addColumn(ScalarColumnDesc<Double>("REFPIX")); |
---|
964 | td.addColumn(ScalarColumnDesc<Double>("REFVAL")); |
---|
965 | td.addColumn(ScalarColumnDesc<Double>("INCREMENT")); |
---|
966 | SetupNewTable aNewTab("freqs", td, Table::New); |
---|
967 | Table aTable (aNewTab, Table::Memory, sdft.length()); |
---|
968 | ScalarColumn<Double> sc0(aTable, "REFPIX"); |
---|
969 | ScalarColumn<Double> sc1(aTable, "REFVAL"); |
---|
970 | ScalarColumn<Double> sc2(aTable, "INCREMENT"); |
---|
971 | for (uInt i=0; i < sdft.length(); ++i) { |
---|
972 | sc0.put(i,sdft.referencePixel(i)); |
---|
973 | sc1.put(i,sdft.referenceValue(i)); |
---|
974 | sc2.put(i,sdft.increment(i)); |
---|
975 | } |
---|
976 | String rf = sdft.refFrame(); |
---|
977 | if (rf.contains("TOPO")) rf = "TOPO"; |
---|
978 | String brf = sdft.baseRefFrame(); |
---|
979 | if (brf.contains("TOPO")) brf = "TOPO"; |
---|
980 | |
---|
981 | aTable.rwKeywordSet().define("BASEREFFRAME", brf); |
---|
982 | aTable.rwKeywordSet().define("REFFRAME", rf); |
---|
983 | aTable.rwKeywordSet().define("EQUINOX", sdft.equinox()); |
---|
984 | aTable.rwKeywordSet().define("UNIT", sdft.unit()); |
---|
985 | aTable.rwKeywordSet().define("DOPPLER", String("RADIO")); |
---|
986 | Vector<Double> rfvec; |
---|
987 | String rfunit; |
---|
988 | sdft.restFrequencies(rfvec,rfunit); |
---|
989 | Quantum<Vector<Double> > q(rfvec, rfunit); |
---|
990 | rfvec.resize(); |
---|
991 | rfvec = q.getValue("Hz"); |
---|
992 | aTable.rwKeywordSet().define("RESTFREQS", rfvec); |
---|
993 | table_.rwKeywordSet().defineTable("FREQUENCIES", aTable); |
---|
994 | return true; |
---|
995 | } |
---|
996 | |
---|
997 | bool SDMemTable::putSDFitTable(const SDFitTable& sdft) |
---|
998 | { |
---|
999 | TableDesc td("", "1", TableDesc::Scratch); |
---|
1000 | td.addColumn(ArrayColumnDesc<String>("FUNCTIONS")); |
---|
1001 | td.addColumn(ArrayColumnDesc<Int>("COMPONENTS")); |
---|
1002 | td.addColumn(ArrayColumnDesc<Double>("PARAMETERS")); |
---|
1003 | td.addColumn(ArrayColumnDesc<Bool>("PARMASK")); |
---|
1004 | td.addColumn(ArrayColumnDesc<String>("FRAMEINFO")); |
---|
1005 | SetupNewTable aNewTab("fits", td, Table::New); |
---|
1006 | Table aTable(aNewTab, Table::Memory); |
---|
1007 | ArrayColumn<String> sc0(aTable, "FUNCTIONS"); |
---|
1008 | ArrayColumn<Int> sc1(aTable, "COMPONENTS"); |
---|
1009 | ArrayColumn<Double> sc2(aTable, "PARAMETERS"); |
---|
1010 | ArrayColumn<Bool> sc3(aTable, "PARMASK"); |
---|
1011 | ArrayColumn<String> sc4(aTable, "FRAMEINFO"); |
---|
1012 | for (uInt i; i<sdft.length(); ++i) { |
---|
1013 | const Vector<Double>& parms = sdft.getParameters(i); |
---|
1014 | const Vector<Bool>& parmask = sdft.getParameterMask(i); |
---|
1015 | const Vector<String>& funcs = sdft.getFunctions(i); |
---|
1016 | const Vector<Int>& comps = sdft.getComponents(i); |
---|
1017 | const Vector<String>& finfo = sdft.getFrameInfo(i); |
---|
1018 | sc0.put(i,funcs); |
---|
1019 | sc1.put(i,comps); |
---|
1020 | sc3.put(i,parmask); |
---|
1021 | sc2.put(i,parms); |
---|
1022 | sc4.put(i,finfo); |
---|
1023 | } |
---|
1024 | table_.rwKeywordSet().defineTable("FITS", aTable); |
---|
1025 | return true; |
---|
1026 | } |
---|
1027 | |
---|
1028 | SDFitTable SDMemTable::getSDFitTable() const |
---|
1029 | { |
---|
1030 | const Table& t = table_.keywordSet().asTable("FITS"); |
---|
1031 | Vector<Double> parms; |
---|
1032 | Vector<Bool> parmask; |
---|
1033 | Vector<String> funcs; |
---|
1034 | Vector<String> finfo; |
---|
1035 | Vector<Int> comps; |
---|
1036 | ROArrayColumn<Double> parmsCol(t, "PARAMETERS"); |
---|
1037 | ROArrayColumn<Bool> parmaskCol(t, "PARMASK"); |
---|
1038 | ROArrayColumn<Int> compsCol(t, "COMPONENTS"); |
---|
1039 | ROArrayColumn<String> funcsCol(t, "FUNCTIONS"); |
---|
1040 | ROArrayColumn<String> finfoCol(t, "FRAMEINFO"); |
---|
1041 | uInt n = t.nrow(); |
---|
1042 | SDFitTable sdft; |
---|
1043 | for (uInt i=0; i<n; ++i) { |
---|
1044 | parmaskCol.get(i, parmask); |
---|
1045 | parmsCol.get(i, parms); |
---|
1046 | funcsCol.get(i, funcs); |
---|
1047 | compsCol.get(i, comps); |
---|
1048 | finfoCol.get(i, finfo); |
---|
1049 | sdft.addFit(parms, parmask, funcs, comps, finfo); |
---|
1050 | } |
---|
1051 | return sdft; |
---|
1052 | } |
---|
1053 | |
---|
1054 | SDFitTable SDMemTable::getSDFitTable(uInt whichRow) const { |
---|
1055 | const Table& t = table_.keywordSet().asTable("FITS"); |
---|
1056 | if (t.nrow() == 0 || whichRow >= t.nrow()) return SDFitTable(); |
---|
1057 | Array<Int> fitid; |
---|
1058 | fitCol_.get(whichRow, fitid); |
---|
1059 | if (fitid.nelements() == 0) return SDFitTable(); |
---|
1060 | |
---|
1061 | IPosition shp = fitid.shape(); |
---|
1062 | IPosition start(4, beamSel_, IFSel_, polSel_,0); |
---|
1063 | IPosition end(4, beamSel_, IFSel_, polSel_, shp[3]-1); |
---|
1064 | |
---|
1065 | // reform the output array slice to be of dim=1 |
---|
1066 | Vector<Int> tmp = (fitid(start, end)).reform(IPosition(1,shp[3])); |
---|
1067 | |
---|
1068 | Vector<Double> parms; |
---|
1069 | Vector<Bool> parmask; |
---|
1070 | Vector<String> funcs; |
---|
1071 | Vector<String> finfo; |
---|
1072 | Vector<Int> comps; |
---|
1073 | ROArrayColumn<Double> parmsCol(t, "PARAMETERS"); |
---|
1074 | ROArrayColumn<Bool> parmaskCol(t, "PARMASK"); |
---|
1075 | ROArrayColumn<Int> compsCol(t, "COMPONENTS"); |
---|
1076 | ROArrayColumn<String> funcsCol(t, "FUNCTIONS"); |
---|
1077 | ROArrayColumn<String> finfoCol(t, "FRAMEINFO"); |
---|
1078 | SDFitTable sdft; |
---|
1079 | Int k=-1; |
---|
1080 | for (uInt i=0; i< tmp.nelements(); ++i) { |
---|
1081 | k = tmp[i]; |
---|
1082 | if ( k > -1 && k < t.nrow() ) { |
---|
1083 | parms.resize(); |
---|
1084 | parmsCol.get(k, parms); |
---|
1085 | parmask.resize(); |
---|
1086 | parmaskCol.get(k, parmask); |
---|
1087 | funcs.resize(); |
---|
1088 | funcsCol.get(k, funcs); |
---|
1089 | comps.resize(); |
---|
1090 | compsCol.get(k, comps); |
---|
1091 | finfo.resize(); |
---|
1092 | finfoCol.get(k, finfo); |
---|
1093 | sdft.addFit(parms, parmask, funcs, comps, finfo); |
---|
1094 | } |
---|
1095 | } |
---|
1096 | return sdft; |
---|
1097 | } |
---|
1098 | |
---|
1099 | void SDMemTable::addFit(uInt whichRow, |
---|
1100 | const Vector<Double>& p, const Vector<Bool>& m, |
---|
1101 | const Vector<String>& f, const Vector<Int>& c) |
---|
1102 | { |
---|
1103 | if (whichRow >= nRow()) { |
---|
1104 | throw(AipsError("Specified row out of range")); |
---|
1105 | } |
---|
1106 | Table t = table_.keywordSet().asTable("FITS"); |
---|
1107 | uInt nrow = t.nrow(); |
---|
1108 | t.addRow(); |
---|
1109 | ArrayColumn<Double> parmsCol(t, "PARAMETERS"); |
---|
1110 | ArrayColumn<Bool> parmaskCol(t, "PARMASK"); |
---|
1111 | ArrayColumn<Int> compsCol(t, "COMPONENTS"); |
---|
1112 | ArrayColumn<String> funcsCol(t, "FUNCTIONS"); |
---|
1113 | ArrayColumn<String> finfoCol(t, "FRAMEINFO"); |
---|
1114 | parmsCol.put(nrow, p); |
---|
1115 | parmaskCol.put(nrow, m); |
---|
1116 | compsCol.put(nrow, c); |
---|
1117 | funcsCol.put(nrow, f); |
---|
1118 | Vector<String> fi = mathutil::toVectorString(getCoordInfo()); |
---|
1119 | finfoCol.put(nrow, fi); |
---|
1120 | |
---|
1121 | Array<Int> fitarr; |
---|
1122 | fitCol_.get(whichRow, fitarr); |
---|
1123 | |
---|
1124 | Array<Int> newarr; // The new Array containing the fitid |
---|
1125 | Int pos =-1; // The fitid position in the array |
---|
1126 | if ( fitarr.nelements() == 0 ) { // no fits at all in this row |
---|
1127 | Array<Int> arr(IPosition(4,nBeam(),nIF(),nPol(),1)); |
---|
1128 | arr = -1; |
---|
1129 | newarr.reference(arr); |
---|
1130 | pos = 0; |
---|
1131 | } else { |
---|
1132 | IPosition shp = fitarr.shape(); |
---|
1133 | IPosition start(4, beamSel_, IFSel_, polSel_,0); |
---|
1134 | IPosition end(4, beamSel_, IFSel_, polSel_, shp[3]-1); |
---|
1135 | // reform the output array slice to be of dim=1 |
---|
1136 | Array<Int> tmp = (fitarr(start, end)).reform(IPosition(1,shp[3])); |
---|
1137 | const Vector<Int>& fits = tmp; |
---|
1138 | VectorSTLIterator<Int> it(fits); |
---|
1139 | Int i = 0; |
---|
1140 | while (it != fits.end()) { |
---|
1141 | if (*it == -1) { |
---|
1142 | pos = i; |
---|
1143 | break; |
---|
1144 | } |
---|
1145 | ++i; |
---|
1146 | ++it; |
---|
1147 | }; |
---|
1148 | } |
---|
1149 | if (pos == -1) { |
---|
1150 | mathutil::extendLastArrayAxis(newarr,fitarr, -1); |
---|
1151 | pos = fitarr.shape()[3]; // the new element position |
---|
1152 | } else { |
---|
1153 | if (fitarr.nelements() > 0) |
---|
1154 | newarr = fitarr; |
---|
1155 | } |
---|
1156 | newarr(IPosition(4, beamSel_, IFSel_, polSel_, pos)) = Int(nrow); |
---|
1157 | fitCol_.put(whichRow, newarr); |
---|
1158 | |
---|
1159 | } |
---|
1160 | |
---|
1161 | SDFrequencyTable SDMemTable::getSDFreqTable() const |
---|
1162 | { |
---|
1163 | const Table& t = table_.keywordSet().asTable("FREQUENCIES"); |
---|
1164 | SDFrequencyTable sdft; |
---|
1165 | |
---|
1166 | // Add refpix/refval/incr. What are the units ? Hz I suppose |
---|
1167 | // but it's nowhere described... |
---|
1168 | Vector<Double> refPix, refVal, incr; |
---|
1169 | ScalarColumn<Double> refPixCol(t, "REFPIX"); |
---|
1170 | ScalarColumn<Double> refValCol(t, "REFVAL"); |
---|
1171 | ScalarColumn<Double> incrCol(t, "INCREMENT"); |
---|
1172 | refPix = refPixCol.getColumn(); |
---|
1173 | refVal = refValCol.getColumn(); |
---|
1174 | incr = incrCol.getColumn(); |
---|
1175 | |
---|
1176 | uInt n = refPix.nelements(); |
---|
1177 | for (uInt i=0; i<n; i++) { |
---|
1178 | sdft.addFrequency(refPix[i], refVal[i], incr[i]); |
---|
1179 | } |
---|
1180 | |
---|
1181 | // Frequency reference frame. I don't know if this |
---|
1182 | // is the correct frame. It might be 'REFFRAME' |
---|
1183 | // rather than 'BASEREFFRAME' ? |
---|
1184 | String frame; |
---|
1185 | t.keywordSet().get("REFFRAME",frame); |
---|
1186 | sdft.setRefFrame(frame); |
---|
1187 | t.keywordSet().get("BASEREFFRAME",frame); |
---|
1188 | sdft.setBaseRefFrame(frame); |
---|
1189 | |
---|
1190 | // Equinox |
---|
1191 | Float equinox; |
---|
1192 | t.keywordSet().get("EQUINOX", equinox); |
---|
1193 | sdft.setEquinox(equinox); |
---|
1194 | |
---|
1195 | String unit; |
---|
1196 | t.keywordSet().get("UNIT", unit); |
---|
1197 | sdft.setUnit(unit); |
---|
1198 | |
---|
1199 | // Rest Frequency |
---|
1200 | Vector<Double> restFreqs; |
---|
1201 | t.keywordSet().get("RESTFREQS", restFreqs); |
---|
1202 | for (uInt i=0; i<restFreqs.nelements(); i++) { |
---|
1203 | sdft.addRestFrequency(restFreqs[i]); |
---|
1204 | } |
---|
1205 | sdft.setRestFrequencyUnit(String("Hz")); |
---|
1206 | |
---|
1207 | return sdft; |
---|
1208 | } |
---|
1209 | |
---|
1210 | bool SDMemTable::putSDContainer(const SDContainer& sdc) |
---|
1211 | { |
---|
1212 | uInt rno = table_.nrow(); |
---|
1213 | table_.addRow(); |
---|
1214 | |
---|
1215 | timeCol_.put(rno, sdc.timestamp); |
---|
1216 | srcnCol_.put(rno, sdc.sourcename); |
---|
1217 | fldnCol_.put(rno, sdc.fieldname); |
---|
1218 | specCol_.put(rno, sdc.getSpectrum()); |
---|
1219 | flagsCol_.put(rno, sdc.getFlags()); |
---|
1220 | tsCol_.put(rno, sdc.getTsys()); |
---|
1221 | scanCol_.put(rno, sdc.scanid); |
---|
1222 | integrCol_.put(rno, sdc.interval); |
---|
1223 | freqidCol_.put(rno, sdc.getFreqMap()); |
---|
1224 | restfreqidCol_.put(rno, sdc.getRestFreqMap()); |
---|
1225 | dirCol_.put(rno, sdc.getDirection()); |
---|
1226 | rbeamCol_.put(rno, sdc.refbeam); |
---|
1227 | tcalCol_.put(rno, sdc.tcal); |
---|
1228 | tcaltCol_.put(rno, sdc.tcaltime); |
---|
1229 | azCol_.put(rno, sdc.azimuth); |
---|
1230 | elCol_.put(rno, sdc.elevation); |
---|
1231 | paraCol_.put(rno, sdc.parangle); |
---|
1232 | fitCol_.put(rno, sdc.getFitMap()); |
---|
1233 | return true; |
---|
1234 | } |
---|
1235 | |
---|
1236 | SDContainer SDMemTable::getSDContainer(uInt whichRow) const |
---|
1237 | { |
---|
1238 | SDContainer sdc(nBeam(),nIF(),nPol(),nChan()); |
---|
1239 | timeCol_.get(whichRow, sdc.timestamp); |
---|
1240 | srcnCol_.get(whichRow, sdc.sourcename); |
---|
1241 | integrCol_.get(whichRow, sdc.interval); |
---|
1242 | scanCol_.get(whichRow, sdc.scanid); |
---|
1243 | fldnCol_.get(whichRow, sdc.fieldname); |
---|
1244 | rbeamCol_.get(whichRow, sdc.refbeam); |
---|
1245 | azCol_.get(whichRow, sdc.azimuth); |
---|
1246 | elCol_.get(whichRow, sdc.elevation); |
---|
1247 | paraCol_.get(whichRow, sdc.parangle); |
---|
1248 | Vector<Float> tc; |
---|
1249 | tcalCol_.get(whichRow, tc); |
---|
1250 | sdc.tcal[0] = tc[0];sdc.tcal[1] = tc[1]; |
---|
1251 | tcaltCol_.get(whichRow, sdc.tcaltime); |
---|
1252 | |
---|
1253 | Array<Float> spectrum; |
---|
1254 | Array<Float> tsys; |
---|
1255 | Array<uChar> flagtrum; |
---|
1256 | Vector<uInt> fmap; |
---|
1257 | Array<Double> direction; |
---|
1258 | Array<Int> fits; |
---|
1259 | |
---|
1260 | specCol_.get(whichRow, spectrum); |
---|
1261 | sdc.putSpectrum(spectrum); |
---|
1262 | flagsCol_.get(whichRow, flagtrum); |
---|
1263 | sdc.putFlags(flagtrum); |
---|
1264 | tsCol_.get(whichRow, tsys); |
---|
1265 | sdc.putTsys(tsys); |
---|
1266 | freqidCol_.get(whichRow, fmap); |
---|
1267 | sdc.putFreqMap(fmap); |
---|
1268 | restfreqidCol_.get(whichRow, fmap); |
---|
1269 | sdc.putRestFreqMap(fmap); |
---|
1270 | dirCol_.get(whichRow, direction); |
---|
1271 | sdc.putDirection(direction); |
---|
1272 | fitCol_.get(whichRow, fits); |
---|
1273 | sdc.putFitMap(fits); |
---|
1274 | return sdc; |
---|
1275 | } |
---|
1276 | |
---|
1277 | bool SDMemTable::putSDHeader(const SDHeader& sdh) |
---|
1278 | { |
---|
1279 | table_.rwKeywordSet().define("nIF", sdh.nif); |
---|
1280 | table_.rwKeywordSet().define("nBeam", sdh.nbeam); |
---|
1281 | table_.rwKeywordSet().define("nPol", sdh.npol); |
---|
1282 | table_.rwKeywordSet().define("nChan", sdh.nchan); |
---|
1283 | table_.rwKeywordSet().define("Observer", sdh.observer); |
---|
1284 | table_.rwKeywordSet().define("Project", sdh.project); |
---|
1285 | table_.rwKeywordSet().define("Obstype", sdh.obstype); |
---|
1286 | table_.rwKeywordSet().define("AntennaName", sdh.antennaname); |
---|
1287 | table_.rwKeywordSet().define("AntennaPosition", sdh.antennaposition); |
---|
1288 | table_.rwKeywordSet().define("Equinox", sdh.equinox); |
---|
1289 | table_.rwKeywordSet().define("FreqRefFrame", sdh.freqref); |
---|
1290 | table_.rwKeywordSet().define("FreqRefVal", sdh.reffreq); |
---|
1291 | table_.rwKeywordSet().define("Bandwidth", sdh.bandwidth); |
---|
1292 | table_.rwKeywordSet().define("UTC", sdh.utc); |
---|
1293 | table_.rwKeywordSet().define("FluxUnit", sdh.fluxunit); |
---|
1294 | table_.rwKeywordSet().define("Epoch", sdh.epoch); |
---|
1295 | return true; |
---|
1296 | } |
---|
1297 | |
---|
1298 | SDHeader SDMemTable::getSDHeader() const |
---|
1299 | { |
---|
1300 | SDHeader sdh; |
---|
1301 | table_.keywordSet().get("nBeam",sdh.nbeam); |
---|
1302 | table_.keywordSet().get("nIF",sdh.nif); |
---|
1303 | table_.keywordSet().get("nPol",sdh.npol); |
---|
1304 | table_.keywordSet().get("nChan",sdh.nchan); |
---|
1305 | table_.keywordSet().get("Observer", sdh.observer); |
---|
1306 | table_.keywordSet().get("Project", sdh.project); |
---|
1307 | table_.keywordSet().get("Obstype", sdh.obstype); |
---|
1308 | table_.keywordSet().get("AntennaName", sdh.antennaname); |
---|
1309 | table_.keywordSet().get("AntennaPosition", sdh.antennaposition); |
---|
1310 | table_.keywordSet().get("Equinox", sdh.equinox); |
---|
1311 | table_.keywordSet().get("FreqRefFrame", sdh.freqref); |
---|
1312 | table_.keywordSet().get("FreqRefVal", sdh.reffreq); |
---|
1313 | table_.keywordSet().get("Bandwidth", sdh.bandwidth); |
---|
1314 | table_.keywordSet().get("UTC", sdh.utc); |
---|
1315 | table_.keywordSet().get("FluxUnit", sdh.fluxunit); |
---|
1316 | table_.keywordSet().get("Epoch", sdh.epoch); |
---|
1317 | return sdh; |
---|
1318 | } |
---|
1319 | void SDMemTable::makePersistent(const std::string& filename) |
---|
1320 | { |
---|
1321 | table_.deepCopy(filename,Table::New); |
---|
1322 | |
---|
1323 | } |
---|
1324 | |
---|
1325 | Int SDMemTable::nScan() const { |
---|
1326 | Int n = 0; |
---|
1327 | Int previous = -1;Int current=0; |
---|
1328 | for (uInt i=0; i< scanCol_.nrow();i++) { |
---|
1329 | scanCol_.getScalar(i,current); |
---|
1330 | if (previous != current) { |
---|
1331 | previous = current; |
---|
1332 | n++; |
---|
1333 | } |
---|
1334 | } |
---|
1335 | return n; |
---|
1336 | } |
---|
1337 | |
---|
1338 | String SDMemTable::formatSec(Double x) const |
---|
1339 | { |
---|
1340 | Double xcop = x; |
---|
1341 | MVTime mvt(xcop/24./3600.); // make days |
---|
1342 | |
---|
1343 | if (x < 59.95) |
---|
1344 | return String(" ") + mvt.string(MVTime::TIME_CLEAN_NO_HM, 7)+"s"; |
---|
1345 | else if (x < 3599.95) |
---|
1346 | return String(" ") + mvt.string(MVTime::TIME_CLEAN_NO_H,7)+" "; |
---|
1347 | else { |
---|
1348 | ostringstream oss; |
---|
1349 | oss << setw(2) << std::right << setprecision(1) << mvt.hour(); |
---|
1350 | oss << ":" << mvt.string(MVTime::TIME_CLEAN_NO_H,7) << " "; |
---|
1351 | return String(oss); |
---|
1352 | } |
---|
1353 | }; |
---|
1354 | |
---|
1355 | String SDMemTable::formatDirection(const MDirection& md) const |
---|
1356 | { |
---|
1357 | Vector<Double> t = md.getAngle(Unit(String("rad"))).getValue(); |
---|
1358 | Int prec = 7; |
---|
1359 | |
---|
1360 | MVAngle mvLon(t[0]); |
---|
1361 | String sLon = mvLon.string(MVAngle::TIME,prec); |
---|
1362 | MVAngle mvLat(t[1]); |
---|
1363 | String sLat = mvLat.string(MVAngle::ANGLE+MVAngle::DIG2,prec); |
---|
1364 | return sLon + String(" ") + sLat; |
---|
1365 | } |
---|
1366 | |
---|
1367 | |
---|
1368 | std::string SDMemTable::getFluxUnit() const |
---|
1369 | { |
---|
1370 | String tmp; |
---|
1371 | table_.keywordSet().get("FluxUnit", tmp); |
---|
1372 | return tmp; |
---|
1373 | } |
---|
1374 | |
---|
1375 | void SDMemTable::setFluxUnit(const std::string& unit) |
---|
1376 | { |
---|
1377 | String tmp(unit); |
---|
1378 | Unit tU(tmp); |
---|
1379 | if (tU==Unit("K") || tU==Unit("Jy")) { |
---|
1380 | table_.rwKeywordSet().define(String("FluxUnit"), tmp); |
---|
1381 | } else { |
---|
1382 | throw AipsError("Illegal unit - must be compatible with Jy or K"); |
---|
1383 | } |
---|
1384 | } |
---|
1385 | |
---|
1386 | |
---|
1387 | void SDMemTable::setInstrument(const std::string& name) |
---|
1388 | { |
---|
1389 | Bool throwIt = True; |
---|
1390 | Instrument ins = SDAttr::convertInstrument(name, throwIt); |
---|
1391 | String nameU(name); |
---|
1392 | nameU.upcase(); |
---|
1393 | table_.rwKeywordSet().define(String("AntennaName"), nameU); |
---|
1394 | } |
---|
1395 | |
---|
1396 | std::string SDMemTable::summary(bool verbose) const { |
---|
1397 | |
---|
1398 | // Format header info |
---|
1399 | ostringstream oss; |
---|
1400 | oss << endl; |
---|
1401 | oss << "--------------------------------------------------------------------------------" << endl; |
---|
1402 | oss << " Scan Table Summary" << endl; |
---|
1403 | oss << "--------------------------------------------------------------------------------" << endl; |
---|
1404 | oss.flags(std::ios_base::left); |
---|
1405 | oss << setw(15) << "Beams:" << setw(4) << nBeam() << endl |
---|
1406 | << setw(15) << "IFs:" << setw(4) << nIF() << endl |
---|
1407 | << setw(15) << "Polarisations:" << setw(4) << nPol() << endl |
---|
1408 | << setw(15) << "Channels:" << setw(4) << nChan() << endl; |
---|
1409 | oss << endl; |
---|
1410 | String tmp; |
---|
1411 | table_.keywordSet().get("Observer", tmp); |
---|
1412 | oss << setw(15) << "Observer:" << tmp << endl; |
---|
1413 | oss << setw(15) << "Obs Date:" << getTime(-1,True) << endl; |
---|
1414 | table_.keywordSet().get("Project", tmp); |
---|
1415 | oss << setw(15) << "Project:" << tmp << endl; |
---|
1416 | table_.keywordSet().get("Obstype", tmp); |
---|
1417 | oss << setw(15) << "Obs. Type:" << tmp << endl; |
---|
1418 | table_.keywordSet().get("AntennaName", tmp); |
---|
1419 | oss << setw(15) << "Antenna Name:" << tmp << endl; |
---|
1420 | table_.keywordSet().get("FluxUnit", tmp); |
---|
1421 | oss << setw(15) << "Flux Unit:" << tmp << endl; |
---|
1422 | Table t = table_.keywordSet().asTable("FREQUENCIES"); |
---|
1423 | Vector<Double> vec; |
---|
1424 | t.keywordSet().get("RESTFREQS",vec); |
---|
1425 | oss << setw(15) << "Rest Freqs:"; |
---|
1426 | if (vec.nelements() > 0) { |
---|
1427 | oss << setprecision(10) << vec << " [Hz]" << endl; |
---|
1428 | } else { |
---|
1429 | oss << "None set" << endl; |
---|
1430 | } |
---|
1431 | oss << setw(15) << "Abcissa:" << getAbcissaString() << endl; |
---|
1432 | oss << setw(15) << "Cursor:" << "Beam[" << getBeam() << "] " |
---|
1433 | << "IF[" << getIF() << "] " << "Pol[" << getPol() << "]" << endl; |
---|
1434 | oss << endl; |
---|
1435 | |
---|
1436 | String dirtype ="Position ("+ MDirection::showType(getDirectionReference()) + ")"; |
---|
1437 | oss << setw(5) << "Scan" |
---|
1438 | << setw(15) << "Source" |
---|
1439 | << setw(24) << dirtype |
---|
1440 | << setw(10) << "Time" |
---|
1441 | << setw(18) << "Integration" |
---|
1442 | << setw(7) << "FreqIDs" << endl; |
---|
1443 | oss << "--------------------------------------------------------------------------------" << endl; |
---|
1444 | |
---|
1445 | // Generate list of scan start and end integrations |
---|
1446 | Vector<Int> scanIDs = scanCol_.getColumn(); |
---|
1447 | Vector<uInt> startInt, endInt; |
---|
1448 | mathutil::scanBoundaries(startInt, endInt, scanIDs); |
---|
1449 | |
---|
1450 | const uInt nScans = startInt.nelements(); |
---|
1451 | String name; |
---|
1452 | Vector<uInt> freqIDs, listFQ; |
---|
1453 | Vector<uInt> restFreqIDs, listRestFQ; |
---|
1454 | uInt nInt; |
---|
1455 | |
---|
1456 | for (uInt i=0; i<nScans; i++) { |
---|
1457 | // Get things from first integration of scan |
---|
1458 | String time = getTime(startInt(i),False); |
---|
1459 | String tInt = formatSec(Double(getInterval(startInt(i)))); |
---|
1460 | String posit = formatDirection(getDirection(startInt(i),True)); |
---|
1461 | srcnCol_.getScalar(startInt(i),name); |
---|
1462 | |
---|
1463 | // Find all the FreqIDs in this scan |
---|
1464 | listFQ.resize(0); |
---|
1465 | listRestFQ.resize(0); |
---|
1466 | for (uInt j=startInt(i); j<endInt(i)+1; j++) { |
---|
1467 | freqidCol_.get(j, freqIDs); |
---|
1468 | for (uInt k=0; k<freqIDs.nelements(); k++) { |
---|
1469 | mathutil::addEntry(listFQ, freqIDs(k)); |
---|
1470 | } |
---|
1471 | // |
---|
1472 | restfreqidCol_.get(j, restFreqIDs); |
---|
1473 | for (uInt k=0; k<restFreqIDs.nelements(); k++) { |
---|
1474 | mathutil::addEntry(listRestFQ, restFreqIDs(k)); |
---|
1475 | } |
---|
1476 | } |
---|
1477 | |
---|
1478 | nInt = endInt(i) - startInt(i) + 1; |
---|
1479 | oss << setw(3) << std::right << i << std::left << setw(2) << " " |
---|
1480 | << setw(15) << name |
---|
1481 | << setw(24) << posit |
---|
1482 | << setw(10) << time |
---|
1483 | << setw(3) << std::right << nInt << setw(3) << " x " << std::left |
---|
1484 | << setw(6) << tInt |
---|
1485 | << " " << listFQ << " " << listRestFQ << endl; |
---|
1486 | } |
---|
1487 | oss << endl; |
---|
1488 | oss << "Table contains " << table_.nrow() << " integration(s) in " |
---|
1489 | << nScans << " scan(s)." << endl; |
---|
1490 | |
---|
1491 | // Frequency Table |
---|
1492 | if (verbose) { |
---|
1493 | std::vector<string> info = getCoordInfo(); |
---|
1494 | SDFrequencyTable sdft = getSDFreqTable(); |
---|
1495 | oss << endl << endl; |
---|
1496 | oss << "FreqID Frame RefFreq(Hz) RefPix Increment(Hz)" << endl; |
---|
1497 | oss << "--------------------------------------------------------------------------------" << endl; |
---|
1498 | for (uInt i=0; i<sdft.length(); i++) { |
---|
1499 | oss << setw(8) << i << setw(8) |
---|
1500 | << info[3] << setw(16) << setprecision(8) |
---|
1501 | << sdft.referenceValue(i) << setw(10) |
---|
1502 | << sdft.referencePixel(i) << setw(12) |
---|
1503 | << sdft.increment(i) << endl; |
---|
1504 | } |
---|
1505 | oss << "--------------------------------------------------------------------------------" << endl; |
---|
1506 | } |
---|
1507 | return String(oss); |
---|
1508 | } |
---|
1509 | /* |
---|
1510 | std::string SDMemTable::scanSummary(const std::vector<int>& whichScans) { |
---|
1511 | ostringstream oss; |
---|
1512 | Vector<Int> scanIDs = scanCol_.getColumn(); |
---|
1513 | Vector<uInt> startInt, endInt; |
---|
1514 | mathutil::scanBoundaries(startInt, endInt, scanIDs); |
---|
1515 | const uInt nScans = startInt.nelements(); |
---|
1516 | std::vector<int>::const_iterator it(whichScans); |
---|
1517 | return String(oss); |
---|
1518 | } |
---|
1519 | */ |
---|
1520 | Int SDMemTable::nBeam() const |
---|
1521 | { |
---|
1522 | Int n; |
---|
1523 | table_.keywordSet().get("nBeam",n); |
---|
1524 | return n; |
---|
1525 | } |
---|
1526 | |
---|
1527 | Int SDMemTable::nIF() const { |
---|
1528 | Int n; |
---|
1529 | table_.keywordSet().get("nIF",n); |
---|
1530 | return n; |
---|
1531 | } |
---|
1532 | |
---|
1533 | Int SDMemTable::nPol() const { |
---|
1534 | Int n; |
---|
1535 | table_.keywordSet().get("nPol",n); |
---|
1536 | return n; |
---|
1537 | } |
---|
1538 | |
---|
1539 | Int SDMemTable::nChan() const { |
---|
1540 | Int n; |
---|
1541 | table_.keywordSet().get("nChan",n); |
---|
1542 | return n; |
---|
1543 | } |
---|
1544 | |
---|
1545 | Table SDMemTable::getHistoryTable() const |
---|
1546 | { |
---|
1547 | return table_.keywordSet().asTable("HISTORY"); |
---|
1548 | } |
---|
1549 | |
---|
1550 | void SDMemTable::appendToHistoryTable(const Table& otherHist) |
---|
1551 | { |
---|
1552 | Table t = table_.rwKeywordSet().asTable("HISTORY"); |
---|
1553 | const String sep = "--------------------------------------------------------------------------------"; |
---|
1554 | addHistory(sep); |
---|
1555 | TableCopy::copyRows(t, otherHist, t.nrow(), 0, otherHist.nrow()); |
---|
1556 | addHistory(sep); |
---|
1557 | } |
---|
1558 | |
---|
1559 | void SDMemTable::addHistory(const std::string& hist) |
---|
1560 | { |
---|
1561 | Table t = table_.rwKeywordSet().asTable("HISTORY"); |
---|
1562 | uInt nrow = t.nrow(); |
---|
1563 | t.addRow(); |
---|
1564 | ScalarColumn<String> itemCol(t, "ITEM"); |
---|
1565 | itemCol.put(nrow, hist); |
---|
1566 | } |
---|
1567 | |
---|
1568 | std::vector<std::string> SDMemTable::getHistory() const |
---|
1569 | { |
---|
1570 | Vector<String> history; |
---|
1571 | const Table& t = table_.keywordSet().asTable("HISTORY"); |
---|
1572 | uInt nrow = t.nrow(); |
---|
1573 | ROScalarColumn<String> itemCol(t, "ITEM"); |
---|
1574 | std::vector<std::string> stlout; |
---|
1575 | String hist; |
---|
1576 | for (uInt i=0; i<nrow; ++i) { |
---|
1577 | itemCol.get(i, hist); |
---|
1578 | stlout.push_back(hist); |
---|
1579 | } |
---|
1580 | return stlout; |
---|
1581 | } |
---|
1582 | |
---|
1583 | |
---|
1584 | /* |
---|
1585 | void SDMemTable::maskChannels(const std::vector<Int>& whichChans ) { |
---|
1586 | |
---|
1587 | std::vector<int>::iterator it; |
---|
1588 | ArrayAccessor<uChar, Axis<asap::PolAxis> > j(flags_); |
---|
1589 | for (it = whichChans.begin(); it != whichChans.end(); it++) { |
---|
1590 | j.reset(j.begin(uInt(*it))); |
---|
1591 | for (ArrayAccessor<uChar, Axis<asap::BeamAxis> > i(j); i != i.end(); ++i) { |
---|
1592 | for (ArrayAccessor<uChar, Axis<asap::IFAxis> > ii(i); ii != ii.end(); ++ii) { |
---|
1593 | for (ArrayAccessor<uChar, Axis<asap::ChanAxis> > iii(ii); |
---|
1594 | iii != iii.end(); ++iii) { |
---|
1595 | (*iii) = |
---|
1596 | } |
---|
1597 | } |
---|
1598 | } |
---|
1599 | } |
---|
1600 | |
---|
1601 | } |
---|
1602 | */ |
---|
1603 | void SDMemTable::flag(int whichRow) |
---|
1604 | { |
---|
1605 | Array<uChar> arr; |
---|
1606 | flagsCol_.get(whichRow, arr); |
---|
1607 | |
---|
1608 | ArrayAccessor<uChar, Axis<asap::BeamAxis> > aa0(arr); |
---|
1609 | aa0.reset(aa0.begin(uInt(beamSel_)));//go to beam |
---|
1610 | ArrayAccessor<uChar, Axis<asap::IFAxis> > aa1(aa0); |
---|
1611 | aa1.reset(aa1.begin(uInt(IFSel_)));// go to IF |
---|
1612 | ArrayAccessor<uChar, Axis<asap::PolAxis> > aa2(aa1); |
---|
1613 | aa2.reset(aa2.begin(uInt(polSel_)));// go to pol |
---|
1614 | |
---|
1615 | for (ArrayAccessor<uChar, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) { |
---|
1616 | (*i) = uChar(True); |
---|
1617 | } |
---|
1618 | |
---|
1619 | flagsCol_.put(whichRow, arr); |
---|
1620 | } |
---|
1621 | |
---|
1622 | MDirection::Types SDMemTable::getDirectionReference() const |
---|
1623 | { |
---|
1624 | Float eq; |
---|
1625 | table_.keywordSet().get("Equinox",eq); |
---|
1626 | std::map<float,string> mp; |
---|
1627 | mp[2000.0] = "J2000"; |
---|
1628 | mp[1950.0] = "B1950"; |
---|
1629 | MDirection::Types mdr; |
---|
1630 | if (!MDirection::getType(mdr, mp[eq])) { |
---|
1631 | mdr = MDirection::J2000; |
---|
1632 | pushLog("WARNING: Unknown equinox using J2000"); |
---|
1633 | |
---|
1634 | } |
---|
1635 | |
---|
1636 | return mdr; |
---|
1637 | } |
---|
1638 | |
---|
1639 | MEpoch::Types SDMemTable::getTimeReference() const |
---|
1640 | { |
---|
1641 | MEpoch::Types met; |
---|
1642 | String ep; |
---|
1643 | table_.keywordSet().get("Epoch",ep); |
---|
1644 | if (!MEpoch::getType(met, ep)) { |
---|
1645 | pushLog("WARNING: Epoch type unknown - using UTC"); |
---|
1646 | met = MEpoch::UTC; |
---|
1647 | } |
---|
1648 | |
---|
1649 | return met; |
---|
1650 | } |
---|
1651 | |
---|
1652 | |
---|
1653 | Bool SDMemTable::setRestFreqs(const Vector<Double>& restFreqsIn, |
---|
1654 | const String& sUnit, |
---|
1655 | const vector<string>& lines, |
---|
1656 | const String& source, |
---|
1657 | Int whichIF) |
---|
1658 | { |
---|
1659 | const Int nIFs = nIF(); |
---|
1660 | if (whichIF>=nIFs) { |
---|
1661 | throw(AipsError("Illegal IF index")); |
---|
1662 | } |
---|
1663 | |
---|
1664 | // Find vector of restfrequencies |
---|
1665 | // Double takes precedence over String |
---|
1666 | Unit unit; |
---|
1667 | Vector<Double> restFreqs; |
---|
1668 | if (restFreqsIn.nelements()>0) { |
---|
1669 | restFreqs.resize(restFreqsIn.nelements()); |
---|
1670 | restFreqs = restFreqsIn; |
---|
1671 | unit = Unit(sUnit); |
---|
1672 | } else if (lines.size()>0) { |
---|
1673 | const uInt nLines = lines.size(); |
---|
1674 | unit = Unit("Hz"); |
---|
1675 | restFreqs.resize(nLines); |
---|
1676 | MFrequency lineFreq; |
---|
1677 | for (uInt i=0; i<nLines; i++) { |
---|
1678 | String tS(lines[i]); |
---|
1679 | tS.upcase(); |
---|
1680 | if (MeasTable::Line(lineFreq, tS)) { |
---|
1681 | restFreqs[i] = lineFreq.getValue().getValue(); // Hz |
---|
1682 | } else { |
---|
1683 | String s = String(lines[i]) + |
---|
1684 | String(" is an unrecognized spectral line"); |
---|
1685 | throw(AipsError(s)); |
---|
1686 | } |
---|
1687 | } |
---|
1688 | } else { |
---|
1689 | throw(AipsError("You have not specified any rest frequencies or lines")); |
---|
1690 | } |
---|
1691 | |
---|
1692 | // If multiple restfreqs, must be length nIF. In this |
---|
1693 | // case we will just replace the rest frequencies |
---|
1694 | // We can't disinguish scalar and vector of length 1 |
---|
1695 | const uInt nRestFreqs = restFreqs.nelements(); |
---|
1696 | Int idx = -1; |
---|
1697 | SDFrequencyTable sdft = getSDFreqTable(); |
---|
1698 | |
---|
1699 | ostringstream oss; |
---|
1700 | if (nRestFreqs>1) { |
---|
1701 | // Replace restFreqs, one per IF |
---|
1702 | if (nRestFreqs != nIFs) { |
---|
1703 | throw (AipsError("Number of rest frequencies must be equal to the number of IFs")); |
---|
1704 | } |
---|
1705 | ostringstream oss; |
---|
1706 | oss << "Replacing rest frequencies, one per IF, with given list : " << restFreqs; |
---|
1707 | sdft.deleteRestFrequencies(); |
---|
1708 | for (uInt i=0; i<nRestFreqs; i++) { |
---|
1709 | Quantum<Double> rf(restFreqs[i], unit); |
---|
1710 | sdft.addRestFrequency(rf.getValue("Hz")); |
---|
1711 | } |
---|
1712 | } else { |
---|
1713 | |
---|
1714 | // Add new rest freq |
---|
1715 | Quantum<Double> rf(restFreqs[0], unit); |
---|
1716 | idx = sdft.addRestFrequency(rf.getValue("Hz")); |
---|
1717 | if (whichIF>=0) { |
---|
1718 | oss << "Selecting given rest frequency (" << restFreqs[0] << ") for IF " << whichIF << endl; |
---|
1719 | } else { |
---|
1720 | oss << "Selecting given rest frequency (" << restFreqs[0] << ") for all IFs" << endl; |
---|
1721 | } |
---|
1722 | } |
---|
1723 | pushLog(String(oss)); |
---|
1724 | // Replace |
---|
1725 | Bool empty = source.empty(); |
---|
1726 | Bool ok = False; |
---|
1727 | if (putSDFreqTable(sdft)) { |
---|
1728 | const uInt nRow = table_.nrow(); |
---|
1729 | String srcName; |
---|
1730 | Vector<uInt> restFreqIDs; |
---|
1731 | for (uInt i=0; i<nRow; i++) { |
---|
1732 | srcnCol_.get(i, srcName); |
---|
1733 | restfreqidCol_.get(i,restFreqIDs); |
---|
1734 | if (idx==-1) { |
---|
1735 | // Replace vector of restFreqs; one per IF. |
---|
1736 | // No selection possible |
---|
1737 | for (uInt i=0; i<nIFs; i++) restFreqIDs[i] = i; |
---|
1738 | } else { |
---|
1739 | // Set RestFreqID for selected data |
---|
1740 | if (empty || source==srcName) { |
---|
1741 | if (whichIF<0) { |
---|
1742 | restFreqIDs = idx; |
---|
1743 | } else { |
---|
1744 | restFreqIDs[whichIF] = idx; |
---|
1745 | } |
---|
1746 | } |
---|
1747 | } |
---|
1748 | restfreqidCol_.put(i,restFreqIDs); |
---|
1749 | } |
---|
1750 | ok = True; |
---|
1751 | } else { |
---|
1752 | ok = False; |
---|
1753 | } |
---|
1754 | |
---|
1755 | return ok; |
---|
1756 | } |
---|
1757 | |
---|
1758 | std::string SDMemTable::spectralLines() const |
---|
1759 | { |
---|
1760 | Vector<String> lines = MeasTable::Lines(); |
---|
1761 | MFrequency lineFreq; |
---|
1762 | Double freq; |
---|
1763 | ostringstream oss; |
---|
1764 | |
---|
1765 | oss.flags(std::ios_base::left); |
---|
1766 | oss << "Line Frequency (Hz)" << endl; |
---|
1767 | oss << "-----------------------" << endl; |
---|
1768 | for (uInt i=0; i<lines.nelements(); i++) { |
---|
1769 | MeasTable::Line(lineFreq, lines[i]); |
---|
1770 | freq = lineFreq.getValue().getValue(); // Hz |
---|
1771 | oss << setw(11) << lines[i] << setprecision(10) << freq << endl; |
---|
1772 | } |
---|
1773 | return String(oss); |
---|
1774 | } |
---|
1775 | |
---|
1776 | void SDMemTable::renumber() |
---|
1777 | { |
---|
1778 | uInt nRow = scanCol_.nrow(); |
---|
1779 | Int newscanid = 0; |
---|
1780 | Int cIdx;// the current scanid |
---|
1781 | // get the first scanid |
---|
1782 | scanCol_.getScalar(0,cIdx); |
---|
1783 | Int pIdx = cIdx;// the scanid of the previous row |
---|
1784 | for (uInt i=0; i<nRow;++i) { |
---|
1785 | scanCol_.getScalar(i,cIdx); |
---|
1786 | if (pIdx == cIdx) { |
---|
1787 | // renumber |
---|
1788 | scanCol_.put(i,newscanid); |
---|
1789 | } else { |
---|
1790 | ++newscanid; |
---|
1791 | pIdx = cIdx; // store scanid |
---|
1792 | --i; // don't increment next loop |
---|
1793 | } |
---|
1794 | } |
---|
1795 | } |
---|
1796 | |
---|
1797 | |
---|
1798 | void SDMemTable::getCursorSlice(IPosition& start, IPosition& end, |
---|
1799 | const IPosition& shape) const |
---|
1800 | { |
---|
1801 | const uInt nDim = shape.nelements(); |
---|
1802 | start.resize(nDim); |
---|
1803 | end.resize(nDim); |
---|
1804 | |
---|
1805 | start(asap::BeamAxis) = beamSel_; |
---|
1806 | end(asap::BeamAxis) = beamSel_; |
---|
1807 | start(asap::IFAxis) = IFSel_; |
---|
1808 | end(asap::IFAxis) = IFSel_; |
---|
1809 | |
---|
1810 | start(asap::PolAxis) = polSel_; |
---|
1811 | end(asap::PolAxis) = polSel_; |
---|
1812 | |
---|
1813 | start(asap::ChanAxis) = 0; |
---|
1814 | end(asap::ChanAxis) = shape(asap::ChanAxis) - 1; |
---|
1815 | } |
---|
1816 | |
---|
1817 | |
---|
1818 | std::vector<float> SDMemTable::getFloatSpectrum(const Array<Float>& arr) const |
---|
1819 | // Get spectrum at cursor location |
---|
1820 | { |
---|
1821 | |
---|
1822 | // Setup accessors |
---|
1823 | ArrayAccessor<Float, Axis<asap::BeamAxis> > aa0(arr); |
---|
1824 | aa0.reset(aa0.begin(uInt(beamSel_))); // Beam selection |
---|
1825 | |
---|
1826 | ArrayAccessor<Float, Axis<asap::IFAxis> > aa1(aa0); |
---|
1827 | aa1.reset(aa1.begin(uInt(IFSel_))); // IF selection |
---|
1828 | |
---|
1829 | ArrayAccessor<Float, Axis<asap::PolAxis> > aa2(aa1); |
---|
1830 | aa2.reset(aa2.begin(uInt(polSel_))); // Pol selection |
---|
1831 | |
---|
1832 | std::vector<float> spectrum; |
---|
1833 | for (ArrayAccessor<Float, Axis<asap::ChanAxis> > i(aa2); i != i.end(); ++i) { |
---|
1834 | spectrum.push_back(*i); |
---|
1835 | } |
---|
1836 | return spectrum; |
---|
1837 | } |
---|
1838 | |
---|